66.53
7.683
22.188
63.548
A
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1
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1
1
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64.16
9.095
22.153
63.263
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1
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1
1
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59.37
9.626
20.740
62.890
A
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1
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1
1
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1
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50.31
9.367
19.792
63.927
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1
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1
1
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57.26
8.968
20.177
61.632
A
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1
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1
1
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1
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60.41
9.703
20.657
60.506
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1
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1
1
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51.81
9.175
18.702
61.842
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1
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1
1
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40.87
9.039
18.548
63.323
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1
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1
1
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1
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26.40
7.709
18.251
63.794
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1
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A
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DC
1
1
1.00
1
N
26.44
7.379
16.946
63.890
A
C2
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1
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A
C2
DC
1
1
1.00
1
C
26.37
8.142
16.059
63.534
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1
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A
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1
1
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1
O
27.59
6.167
16.642
64.393
A
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1
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N3
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1
1
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1
N
24.18
5.318
17.591
64.793
A
C4
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1
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A
C4
DC
1
1
1.00
1
C
22.36
4.125
17.238
65.265
A
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1
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A
N4
DC
1
1
1.00
1
N
26.98
5.659
18.958
64.694
A
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1
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A
C5
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1
1
1.00
1
C
23.65
6.881
19.227
64.213
A
C6
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1
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A
C6
DC
1
1
1.00
1
C
54.90
9.055
21.120
59.105
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2
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1
2
1.00
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49.83
10.215
21.596
58.287
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2
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1
2
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O
44.46
7.813
21.935
59.309
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2
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1
2
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47.74
8.564
19.732
58.633
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2
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1
2
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39.21
7.979
19.753
57.385
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2
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1
2
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31.31
8.283
18.424
56.904
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2
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1
2
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29.54
7.433
17.495
57.568
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2
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1
2
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30.04
8.001
18.438
55.475
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2
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1
2
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33.42
8.918
17.524
54.928
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2
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1
2
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O
26.87
6.566
18.011
55.467
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2
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1
2
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1
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24.35
6.434
17.090
56.636
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2
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A
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1
2
1.00
1
C
17.51
5.128
17.185
57.299
A
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2
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N9
DG
1
2
1.00
1
N
12.82
4.361
18.261
57.651
A
C8
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2
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A
C8
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1
2
1.00
1
C
19.11
3.233
17.909
58.245
A
N7
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2
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A
N7
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1
2
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1
N
5.53
3.270
16.531
58.259
A
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2
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A
C5
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1
2
1.00
1
C
10.08
2.392
15.621
58.771
A
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2
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1
2
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1
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19.86
1.355
15.802
59.366
A
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2
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1
2
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O
13.68
2.826
14.356
58.592
A
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2
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1
2
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1
N
11.08
3.980
14.009
57.984
A
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2
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1
2
1.00
1
C
18.36
4.258
12.738
57.873
A
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2
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1
2
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1
N
14.79
4.846
14.847
57.506
A
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2
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1
2
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11.66
4.427
16.093
57.701
A
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2
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1
2
1.00
1
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27.55
9.035
17.322
53.366
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3
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DT
1
3
1.00
1
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33.57
10.456
17.017
53.078
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3
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A
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1
3
1.00
1
O
28.25
8.302
18.428
52.715
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3
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1
3
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27.19
8.218
15.996
53.065
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3
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1
3
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O
23.94
8.827
14.781
53.503
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3
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1
3
1.00
1
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22.72
7.874
13.633
53.437
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3
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1
3
1.00
1
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24.92
6.656
13.936
54.116
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3
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1
3
1.00
1
O
23.69
7.540
13.387
52.013
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3
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A
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1
3
1.00
1
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24.14
7.933
12.041
51.754
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3
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A
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1
3
1.00
1
O
24.38
6.063
13.748
51.973
A
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3
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A
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1
3
1.00
1
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18.44
5.570
13.473
53.360
A
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3
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A
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DT
1
3
1.00
1
C
16.06
4.432
14.275
53.849
A
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3
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DT
1
3
1.00
1
N
10.33
3.493
13.625
54.580
A
C2
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3
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A
C2
DT
1
3
1.00
1
C
21.65
3.504
12.435
54.818
A
O2
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3
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A
O2
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1
3
1.00
1
O
19.03
2.480
14.341
55.064
A
N3
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3
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A
N3
DT
1
3
1.00
1
N
18.77
2.311
15.662
54.875
A
C4
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3
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A
C4
DT
1
3
1.00
1
C
24.63
1.351
16.188
55.391
A
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3
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A
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1
3
1.00
1
O
16.29
3.310
16.304
54.099
A
C5
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3
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A
C5
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1
3
1.00
1
C
15.86
3.203
17.777
53.828
A
C7
DT
3
ATOM
A
C7
DT
1
3
1.00
1
C
13.61
4.343
15.608
53.641
A
C6
DT
3
ATOM
A
C6
DT
1
3
1.00
1
C
30.41
7.767
11.360
50.341
A
P
DA
4
ATOM
A
P
DA
1
4
1.00
1
P
33.14
8.821
10.338
50.257
A
OP1
DA
4
ATOM
A
OP1
DA
1
4
1.00
1
O
26.97
7.605
12.412
49.307
A
OP2
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4
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A
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DA
1
4
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1
O
24.37
6.409
10.554
50.464
A
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4
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A
O5'
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1
4
1.00
1
O
13.52
6.401
9.345
51.195
A
C5'
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4
ATOM
A
C5'
DA
1
4
1.00
1
C
14.44
5.058
8.654
51.151
A
C4'
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4
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A
C4'
DA
1
4
1.00
1
C
20.29
4.103
9.566
51.674
A
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4
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A
O4'
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1
4
1.00
1
O
23.48
4.637
8.380
49.742
A
C3'
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4
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A
C3'
DA
1
4
1.00
1
C
34.82
3.964
7.135
49.669
A
O3'
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4
ATOM
A
O3'
DA
1
4
1.00
1
O
19.04
3.729
9.530
49.440
A
C2'
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4
ATOM
A
C2'
DA
1
4
1.00
1
C
12.81
3.076
9.750
50.744
A
C1'
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4
ATOM
A
C1'
DA
1
4
1.00
1
C
7.19
2.769
11.127
50.909
A
N9
DA
4
ATOM
A
N9
DA
1
4
1.00
1
N
6.02
3.405
12.286
50.524
A
C8
DA
4
ATOM
A
C8
DA
1
4
1.00
1
C
15.48
2.785
13.377
50.903
A
N7
DA
4
ATOM
A
N7
DA
1
4
1.00
1
N
7.86
1.666
12.863
51.587
A
C5
DA
4
ATOM
A
C5
DA
1
4
1.00
1
C
9.26
0.578
13.460
52.195
A
C6
DA
4
ATOM
A
C6
DA
1
4
1.00
1
C
12.37
0.411
14.757
52.287
A
N6
DA
4
ATOM
A
N6
DA
1
4
1.00
1
N
9.94
-0.330
12.686
52.726
A
N1
DA
4
ATOM
A
N1
DA
1
4
1.00
1
N
12.87
-0.139
11.378
52.640
A
C2
DA
4
ATOM
A
C2
DA
1
4
1.00
1
C
10.08
0.829
10.643
52.123
A
N3
DA
4
ATOM
A
N3
DA
1
4
1.00
1
N
11.82
1.695
11.499
51.599
A
C4
DA
4
ATOM
A
C4
DA
1
4
1.00
1
C
34.10
3.619
6.513
48.216
A
P
DC
5
ATOM
A
P
DC
1
5
1.00
1
P
25.13
3.770
5.054
48.365
A
OP1
DC
5
ATOM
A
OP1
DC
1
5
1.00
1
O
31.98
4.351
7.267
47.166
A
OP2
DC
5
ATOM
A
OP2
DC
1
5
1.00
1
O
31.25
2.067
6.858
48.033
A
O5'
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5
ATOM
A
O5'
DC
1
5
1.00
1
O
28.04
1.058
6.246
48.859
A
C5'
DC
5
ATOM
A
C5'
DC
1
5
1.00
1
C
23.39
-0.275
6.964
48.818
A
C4'
DC
5
ATOM
A
C4'
DC
1
5
1.00
1
C
27.28
-0.139
8.294
49.278
A
O4'
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5
ATOM
A
O4'
DC
1
5
1.00
1
O
25.87
-0.745
7.051
47.407
A
C3'
DC
5
ATOM
A
C3'
DC
1
5
1.00
1
C
31.64
-1.712
6.024
47.147
A
O3'
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5
ATOM
A
O3'
DC
1
5
1.00
1
O
21.49
-1.266
8.443
47.316
A
C2'
DC
5
ATOM
A
C2'
DC
1
5
1.00
1
C
18.11
-1.198
9.007
48.721
A
C1'
DC
5
ATOM
A
C1'
DC
1
5
1.00
1
C
16.46
-0.771
10.393
48.681
A
N1
DC
5
ATOM
A
N1
DC
1
5
1.00
1
N
20.18
-1.563
11.318
49.299
A
C2
DC
5
ATOM
A
C2
DC
1
5
1.00
1
C
17.14
-2.579
10.957
49.870
A
O2
DC
5
ATOM
A
O2
DC
1
5
1.00
1
O
21.78
-1.215
12.644
49.235
A
N3
DC
5
ATOM
A
N3
DC
1
5
1.00
1
N
20.26
-0.111
13.018
48.558
A
C4
DC
5
ATOM
A
C4
DC
1
5
1.00
1
C
13.30
0.223
14.299
48.512
A
N4
DC
5
ATOM
A
N4
DC
1
5
1.00
1
N
14.40
0.722
12.062
47.904
A
C5
DC
5
ATOM
A
C5
DC
1
5
1.00
1
C
19.31
0.353
10.766
47.994
A
C6
DC
5
ATOM
A
C6
DC
1
5
1.00
1
C
36.19
-2.055
5.699
45.616
A
P
DG
6
ATOM
A
P
DG
1
6
1.00
1
P
38.04
-2.377
4.260
45.549
A
OP1
DG
6
ATOM
A
OP1
DG
1
6
1.00
1
O
28.55
-1.036
6.283
44.716
A
OP2
DG
6
ATOM
A
OP2
DG
1
6
1.00
1
O
30.80
-3.346
6.556
45.298
A
O5'
DG
6
ATOM
A
O5'
DG
1
6
1.00
1
O
27.36
-4.641
6.069
45.584
A
C5'
DG
6
ATOM
A
C5'
DG
1
6
1.00
1
C
25.05
-5.660
6.815
44.773
A
C4'
DG
6
ATOM
A
C4'
DG
1
6
1.00
1
C
26.66
-5.419
8.200
44.968
A
O4'
DG
6
ATOM
A
O4'
DG
1
6
1.00
1
O
26.78
-5.517
6.604
43.280
A
C3'
DG
6
ATOM
A
C3'
DG
1
6
1.00
1
C
31.73
-6.233
5.443
42.810
A
O3'
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6
ATOM
A
O3'
DG
1
6
1.00
1
O
23.05
-6.198
7.856
42.795
A
C2'
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6
ATOM
A
C2'
DG
1
6
1.00
1
C
20.54
-6.147
8.844
43.944
A
C1'
DG
6
ATOM
A
C1'
DG
1
6
1.00
1
C
14.29
-5.449
10.059
43.595
A
N9
DG
6
ATOM
A
N9
DG
1
6
1.00
1
N
9.14
-4.281
10.179
42.930
A
C8
DG
6
ATOM
A
C8
DG
1
6
1.00
1
C
18.14
-3.930
11.410
42.726
A
N7
DG
6
ATOM
A
N7
DG
1
6
1.00
1
N
18.52
-4.929
12.132
43.338
A
C5
DG
6
ATOM
A
C5
DG
1
6
1.00
1
C
27.61
-5.063
13.503
43.477
A
C6
DG
6
ATOM
A
C6
DG
1
6
1.00
1
C
34.43
-4.294
14.359
43.057
A
O6
DG
6
ATOM
A
O6
DG
1
6
1.00
1
O
26.78
-6.208
13.848
44.180
A
N1
DG
6
ATOM
A
N1
DG
1
6
1.00
1
N
20.65
-7.094
12.977
44.693
A
C2
DG
6
ATOM
A
C2
DG
1
6
1.00
1
C
17.87
-8.123
13.491
45.310
A
N2
DG
6
ATOM
A
N2
DG
1
6
1.00
1
N
25.61
-6.976
11.666
44.577
A
N3
DG
6
ATOM
A
N3
DG
1
6
1.00
1
N
16.73
-5.861
11.318
43.886
A
C4
DG
6
ATOM
A
C4
DG
1
6
1.00
1
C
24.10
3.302
17.127
61.944
A
C1
232
7
HETATM
B
C1
232
2
1.00
1
C
28.30
3.432
18.453
61.680
A
N2
232
7
HETATM
B
N2
232
2
1.00
1
N
23.98
4.522
18.977
61.079
A
C3
232
7
HETATM
B
C3
232
2
1.00
1
C
25.85
5.544
18.179
60.709
A
C4
232
7
HETATM
B
C4
232
2
1.00
1
C
22.44
6.534
15.999
60.567
A
C5
232
7
HETATM
B
C5
232
2
1.00
1
C
17.91
6.475
14.668
60.808
A
C6
232
7
HETATM
B
C6
232
2
1.00
1
C
20.52
5.088
12.805
61.826
A
N7
232
7
HETATM
B
N7
232
2
1.00
1
N
18.01
3.136
11.692
62.947
A
C8
232
7
HETATM
B
C8
232
2
1.00
1
C
22.86
1.936
11.868
63.538
A
C9
232
7
HETATM
B
C9
232
2
1.00
1
C
15.48
2.118
14.306
63.060
A
C11
232
7
HETATM
B
C11
232
2
1.00
1
C
24.02
5.465
16.810
60.978
A
C12
232
7
HETATM
B
C12
232
2
1.00
1
C
18.22
5.368
14.111
61.463
A
C13
232
7
HETATM
B
C13
232
2
1.00
1
C
11.10
3.841
12.771
62.414
A
C14
232
7
HETATM
B
C14
232
2
1.00
1
C
14.23
3.362
14.072
62.465
A
C15
232
7
HETATM
B
C15
232
2
1.00
1
C
16.11
4.293
14.900
61.861
A
C16
232
7
HETATM
B
C16
232
2
1.00
1
C
21.89
4.339
16.258
61.595
A
C17
232
7
HETATM
B
C17
232
2
1.00
1
C
32.60
2.316
19.430
62.028
A
C19
232
7
HETATM
B
C19
232
2
1.00
1
C
22.48
1.388
13.186
63.621
A
C10
232
7
HETATM
B
C10
232
2
1.00
1
C
35.40
0.143
13.247
64.264
A
O10
232
7
HETATM
B
O10
232
2
1.00
1
O
39.05
-0.383
14.523
64.344
A
C18
232
7
HETATM
B
C18
232
2
1.00
1
C
26.89
1.066
19.194
61.146
A
C20
232
7
HETATM
B
C20
232
2
1.00
1
C
33.74
1.204
19.462
59.676
A
N21
232
7
HETATM
B
N21
232
2
1.00
1
N
32.49
-0.013
18.922
59.017
A
C22
232
7
HETATM
B
C22
232
2
1.00
1
C
26.64
0.100
18.946
57.490
A
C23
232
7
HETATM
B
C23
232
2
1.00
1
C
28.70
0.307
20.377
56.996
A
C24
232
7
HETATM
B
C24
232
2
1.00
1
C
25.72
1.429
21.135
57.775
A
C25
232
7
HETATM
B
C25
232
2
1.00
1
C
30.34
1.354
20.911
59.322
A
C26
232
7
HETATM
B
C26
232
2
1.00
1
C
35.95
0.790
20.194
55.573
A
C27
232
7
HETATM
B
C27
232
2
1.00
1
C
40.01
0.000
21.029
54.558
A
C28
232
7
HETATM
B
C28
232
2
0.50
1
C
0.035411
0.020444
0.000000
0.000000
0.040889
0.000000
0.000000
0.000000
0.013747
0.00000
0.00000
0.00000
Williams, L.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
28.240
28.240
72.744
C49 H56 N6 O2 2
761.008
1,3-DI[[[10-METHOXY-7H-PYRIDO[4,3-C]CARBAZOL-2-IUMYL]-ETHYL]-PIPERIDIN-4-YL]-PROPANE
BIS INTERCALATOR D232
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
Y
1
N
C
Y
2
N
N
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
N
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
C
N
17
N
C
Y
18
N
C
N
19
N
O
N
20
N
C
N
21
N
C
N
22
N
N
N
23
N
C
N
24
N
C
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
C
N
29
N
C
Y
30
N
C
Y
31
N
N
Y
32
N
C
Y
33
N
C
Y
34
N
C
Y
35
N
C
Y
36
N
N
Y
37
N
C
Y
38
N
C
Y
39
N
C
Y
40
N
C
Y
41
N
C
Y
42
N
C
Y
43
N
C
Y
44
N
C
Y
45
N
C
N
46
N
C
Y
47
N
C
N
48
N
O
N
49
N
C
N
50
N
C
N
51
N
N
N
52
N
C
N
53
N
C
N
54
N
C
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
O
N
115
N
P
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
C
N
120
R
C
N
121
N
O
N
122
S
C
N
123
N
O
N
124
N
C
N
125
R
C
Y
126
N
N
Y
127
N
C
Y
128
N
N
Y
129
N
C
Y
130
N
C
N
131
N
N
Y
132
N
N
Y
133
N
C
Y
134
N
N
Y
135
N
C
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
O
N
151
N
P
N
152
N
O
N
153
N
O
N
154
N
O
N
155
N
C
N
156
R
C
N
157
N
O
N
158
S
C
N
159
N
O
N
160
N
C
N
161
R
C
N
162
N
N
N
163
N
C
N
164
N
O
N
165
N
N
N
166
N
C
N
167
N
N
N
168
N
C
N
169
N
C
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
O
N
185
N
P
N
186
N
O
N
187
N
O
N
188
N
O
N
189
N
C
N
190
R
C
N
191
N
O
N
192
S
C
N
193
N
O
N
194
N
C
N
195
R
C
Y
196
N
N
Y
197
N
C
Y
198
N
N
Y
199
N
C
N
200
N
C
N
201
N
O
N
202
N
N
N
203
N
C
N
204
N
N
N
205
N
N
Y
206
N
C
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
O
N
222
N
P
N
223
N
O
N
224
N
O
N
225
N
O
N
226
N
C
N
227
R
C
N
228
N
O
N
229
S
C
N
230
N
O
N
231
N
C
N
232
R
C
N
233
N
N
N
234
N
C
N
235
N
O
N
236
N
N
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
Y
1
N
doub
Y
2
N
sing
N
3
N
sing
Y
4
N
sing
N
5
N
sing
Y
6
N
doub
N
7
N
sing
Y
8
N
sing
N
9
N
sing
Y
10
N
doub
Y
11
N
sing
N
12
N
sing
Y
13
N
sing
N
14
N
sing
Y
15
N
sing
Y
16
N
sing
N
17
N
sing
Y
18
N
doub
Y
19
N
sing
N
20
N
sing
Y
21
N
sing
N
22
N
sing
Y
23
N
sing
Y
24
N
doub
N
25
N
sing
Y
26
N
doub
Y
27
N
doub
Y
28
N
doub
Y
29
N
sing
Y
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
Y
64
N
doub
Y
65
N
sing
N
66
N
sing
Y
67
N
sing
N
68
N
sing
Y
69
N
doub
N
70
N
sing
Y
71
N
sing
N
72
N
sing
Y
73
N
doub
Y
74
N
sing
N
75
N
sing
Y
76
N
sing
N
77
N
sing
Y
78
N
sing
Y
79
N
sing
N
80
N
sing
Y
81
N
doub
Y
82
N
sing
N
83
N
sing
Y
84
N
sing
N
85
N
sing
Y
86
N
sing
Y
87
N
doub
N
88
N
sing
Y
89
N
doub
Y
90
N
doub
Y
91
N
doub
Y
92
N
sing
Y
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
Y
146
N
sing
Y
147
N
sing
Y
148
N
doub
N
149
N
sing
Y
150
N
sing
Y
151
N
sing
Y
152
N
doub
N
153
N
sing
Y
154
N
doub
N
155
N
sing
N
156
N
sing
Y
157
N
sing
Y
158
N
doub
N
159
N
sing
Y
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
Y
219
N
sing
Y
220
N
sing
Y
221
N
doub
N
222
N
sing
Y
223
N
sing
N
224
N
sing
Y
225
N
doub
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
NE
Curr.Med.Chem.
0929-8673
7
59
71
10637357
Effects of cationic charge on three-dimensional structures of intercalative complexes: structure of a bis-intercalated DNA complex solved by MAD phasing.
2000
10.2210/pdb1c9z/pdb
pdb_00001c9z
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
300
1
AREA DETECTOR
1995-09-09
UCSD MARK II
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
COMPLEXED WITH BIS-INTERCALATOR D232
1809.217
5'-D(*CP*GP*TP*AP*CP*G)-3'
1
syn
polymer
761.008
1,3-DI[[[10-METHOXY-7H-PYRIDO[4,3-C]CARBAZOL-2-IUMYL]-ETHYL]-PIPERIDIN-4-YL]-PROPANE
1
syn
non-polymer
no
no
(DC)(DG)(DT)(DA)(DC)(DG)
CGTACG
A
polydeoxyribonucleotide
n
n
n
n
n
n
1
2.22
44.50
VAPOR DIFFUSION, SITTING DROP
6.0
MPD, SPERMINE, MAGNESIUM CHLORIDE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 300K
300
SPERMINE
1
MGCL2
1
SODIUM CACODYLATE
1
MPD
1
MPD
2
-6.552
1
19
A
1
A
6
0.943
A_DC1:DG6_A
1
-6.046
0.589
0.685
-0.378
-6.426
1
19
A
2
A
5
-4.641
A_DG2:DC5_A
2
-2.145
-0.252
0.131
-0.473
4.780
1
20
A
3
A
4
-9.422
A_DT3:DA4_A
3
-10.356
0.246
-0.145
-0.121
-4.780
1
20
A
4
A
3
-9.422
A_DA4:DT3_A
4
-10.356
-0.246
-0.145
-0.121
6.426
1
19
A
5
A
2
-4.641
A_DC5:DG2_A
5
-2.145
0.252
0.131
-0.473
6.553
1
19
A
6
A
1
0.943
A_DG6:DC1_A
6
-6.046
-0.589
0.685
-0.378
6.390
14.413
A
A
1
2
2.991
A
A
6
5
6.815
0.734
0.078
-0.098
AA_DC1DG2:DC5DG6_AA
1
5.112
-20.833
13.460
-1.768
9.295
3.129
34.907
A
A
2
3
-0.555
A
A
5
4
3.156
-0.333
-0.633
-0.218
AA_DG2DT3:DA4DC5_AA
2
1.495
-2.493
34.875
-0.315
1.273
3.671
38.509
A
A
3
4
14.770
A
A
4
3
3.597
9.645
0.000
0.747
AA_DT3DA4:DT3DA4_AA
3
0.000
0.000
37.326
-0.218
0.000
3.129
34.907
A
A
4
5
-0.555
A
A
3
2
3.156
-0.333
0.633
-0.218
AA_DA4DC5:DG2DT3_AA
4
-1.495
2.493
34.875
-0.315
-1.273
6.390
14.413
A
A
5
6
2.991
A
A
2
1
6.815
0.734
-0.078
-0.098
AA_DC5DG6:DC1DG2_AA
5
-5.112
20.833
13.460
-1.768
-9.294
chem_comp_atom
chem_comp_bond
database_2
pdbx_unobs_or_zero_occ_atoms
struct_conn
struct_site
pdbx_database_status
repository
Initial release
Version format compliance
Version format compliance
Database references
Advisory
Data collection
Database references
Derived calculations
Other
1
0
2000-04-02
1
1
2008-04-27
1
2
2011-07-13
1
3
2011-12-07
1
4
2024-02-07
1
5
2024-04-17
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_pdbx_database_status.status_code_sf
DITERCALINIUM-CGCG
RCSB
Y
RCSB
1999-08-03
REL
REL
232
1,3-DI[[[10-METHOXY-7H-PYRIDO[4,3-C]CARBAZOL-2-IUMYL]-ETHYL]-PIPERIDIN-4-YL]-PROPANE
SYNTHETIC
sample
232
7
2
232
232
7
A
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
T
3
n
3
DT
3
A
A
4
n
4
DA
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
11_556
-x+y,y,-z+3/2
crystal symmetry operation
0.0000000000
0.0000000000
109.1160000000
1
A
232
7
B
232
1
-7.98
0.80
109.40
101.42
A
A
A
O5'
C5'
C4'
DG
DG
DG
2
2
2
N
1
4.38
0.60
106.00
110.38
A
A
A
O4'
C4'
C3'
DG
DG
DG
2
2
2
N
1
-5.31
0.80
105.90
100.59
A
A
A
O4'
C1'
C2'
DT
DT
DT
3
3
3
N
1
-4.73
0.60
122.30
117.57
A
A
A
N3
C2
O2
DT
DT
DT
3
3
3
N
1
-5.93
0.70
108.00
102.07
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
3.59
0.50
129.30
132.89
A
A
A
N1
C2
N3
DA
DA
DA
4
4
4
N
1
-4.69
0.50
110.60
105.91
A
A
A
C2
N3
C4
DA
DA
DA
4
4
4
N
1
A
A
C5'
C4'
DC
DC
1
1
0.043
0.007
1.512
1.555
N
1
A
A
C4'
C3'
DG
DG
2
2
-0.064
0.010
1.521
1.457
N
1
A
A
C6
N1
DA
DA
4
4
-0.045
0.007
1.351
1.306
N
1
A
A
N9
C4
DA
DA
4
4
-0.044
0.006
1.374
1.330
N
0.1961000
0.1961000
0.1961000
2.4
10
99
5220
4682
90
RANDOM
1
4.
2.
PARKINSON ET AL.
2.4
10
0
149
29
120
0
21
2.4
10.0
1C9Z
5220
4698
2.0
4.0
0.0510000
1
9.2
3.2
91
0.0600000
2.4
2.51
1
4.2
84
phasing
MADSYS
refinement
X-PLOR
3.851
data reduction
SDMS
data scaling
SDMS
D232-CGTACG
1
N
N
2
N
N
covale
1.533
none
A
232
7
B
C27
232
1_555
A
232
7
B
C28
232
11_556
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
A
DG
6
A
N1
DG
6
11_556
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
A
DG
6
A
O6
DG
6
11_556
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
A
DG
6
A
N2
DG
6
11_556
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
A
DC
5
A
N3
DC
5
11_556
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
A
DC
5
A
O2
DC
5
11_556
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
A
DC
5
A
N4
DC
5
11_556
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
A
DA
4
A
N1
DA
4
11_556
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
A
DA
4
A
N6
DA
4
11_556
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
A
DT
3
A
N3
DT
3
11_556
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
A
DT
3
A
O4
DT
3
11_556
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
A
DG
2
A
N1
DG
2
11_556
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
A
DG
2
A
O6
DG
2
11_556
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
A
DG
2
A
N2
DG
2
11_556
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
A
DC
1
A
N3
DC
1
11_556
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
A
DC
1
A
O2
DC
1
11_556
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
A
DC
1
A
N4
DC
1
11_556
DNA
DNA, INTERCALATOR, INTERCALATION, DRUG, MAJOR GROOVE
1C9Z
PDB
1
1C9Z
1
6
1C9Z
1
6
1C9Z
A
1
1
6
BINDING SITE FOR RESIDUE 232 A 7
A
232
7
Software
7
A
DC
1
A
DC
1
7
1_555
A
DG
2
A
DG
2
7
1_555
A
DT
3
A
DT
3
7
1_555
A
DA
4
A
DA
4
7
5_565
A
DC
5
A
DC
5
7
11_556
A
DG
6
A
DG
6
7
11_556
A
DG
6
A
DG
6
7
5_555
179
hexagonal
P 65 2 2