66.53 7.683 22.188 63.548 A O5' DC 1 ATOM A O5' DC 1 1 1.00 1 O 64.16 9.095 22.153 63.263 A C5' DC 1 ATOM A C5' DC 1 1 1.00 1 C 59.37 9.626 20.740 62.890 A C4' DC 1 ATOM A C4' DC 1 1 1.00 1 C 50.31 9.367 19.792 63.927 A O4' DC 1 ATOM A O4' DC 1 1 1.00 1 O 57.26 8.968 20.177 61.632 A C3' DC 1 ATOM A C3' DC 1 1 1.00 1 C 60.41 9.703 20.657 60.506 A O3' DC 1 ATOM A O3' DC 1 1 1.00 1 O 51.81 9.175 18.702 61.842 A C2' DC 1 ATOM A C2' DC 1 1 1.00 1 C 40.87 9.039 18.548 63.323 A C1' DC 1 ATOM A C1' DC 1 1 1.00 1 C 26.40 7.709 18.251 63.794 A N1 DC 1 ATOM A N1 DC 1 1 1.00 1 N 26.44 7.379 16.946 63.890 A C2 DC 1 ATOM A C2 DC 1 1 1.00 1 C 26.37 8.142 16.059 63.534 A O2 DC 1 ATOM A O2 DC 1 1 1.00 1 O 27.59 6.167 16.642 64.393 A N3 DC 1 ATOM A N3 DC 1 1 1.00 1 N 24.18 5.318 17.591 64.793 A C4 DC 1 ATOM A C4 DC 1 1 1.00 1 C 22.36 4.125 17.238 65.265 A N4 DC 1 ATOM A N4 DC 1 1 1.00 1 N 26.98 5.659 18.958 64.694 A C5 DC 1 ATOM A C5 DC 1 1 1.00 1 C 23.65 6.881 19.227 64.213 A C6 DC 1 ATOM A C6 DC 1 1 1.00 1 C 54.90 9.055 21.120 59.105 A P DG 2 ATOM A P DG 1 2 1.00 1 P 49.83 10.215 21.596 58.287 A OP1 DG 2 ATOM A OP1 DG 1 2 1.00 1 O 44.46 7.813 21.935 59.309 A OP2 DG 2 ATOM A OP2 DG 1 2 1.00 1 O 47.74 8.564 19.732 58.633 A O5' DG 2 ATOM A O5' DG 1 2 1.00 1 O 39.21 7.979 19.753 57.385 A C5' DG 2 ATOM A C5' DG 1 2 1.00 1 C 31.31 8.283 18.424 56.904 A C4' DG 2 ATOM A C4' DG 1 2 1.00 1 C 29.54 7.433 17.495 57.568 A O4' DG 2 ATOM A O4' DG 1 2 1.00 1 O 30.04 8.001 18.438 55.475 A C3' DG 2 ATOM A C3' DG 1 2 1.00 1 C 33.42 8.918 17.524 54.928 A O3' DG 2 ATOM A O3' DG 1 2 1.00 1 O 26.87 6.566 18.011 55.467 A C2' DG 2 ATOM A C2' DG 1 2 1.00 1 C 24.35 6.434 17.090 56.636 A C1' DG 2 ATOM A C1' DG 1 2 1.00 1 C 17.51 5.128 17.185 57.299 A N9 DG 2 ATOM A N9 DG 1 2 1.00 1 N 12.82 4.361 18.261 57.651 A C8 DG 2 ATOM A C8 DG 1 2 1.00 1 C 19.11 3.233 17.909 58.245 A N7 DG 2 ATOM A N7 DG 1 2 1.00 1 N 5.53 3.270 16.531 58.259 A C5 DG 2 ATOM A C5 DG 1 2 1.00 1 C 10.08 2.392 15.621 58.771 A C6 DG 2 ATOM A C6 DG 1 2 1.00 1 C 19.86 1.355 15.802 59.366 A O6 DG 2 ATOM A O6 DG 1 2 1.00 1 O 13.68 2.826 14.356 58.592 A N1 DG 2 ATOM A N1 DG 1 2 1.00 1 N 11.08 3.980 14.009 57.984 A C2 DG 2 ATOM A C2 DG 1 2 1.00 1 C 18.36 4.258 12.738 57.873 A N2 DG 2 ATOM A N2 DG 1 2 1.00 1 N 14.79 4.846 14.847 57.506 A N3 DG 2 ATOM A N3 DG 1 2 1.00 1 N 11.66 4.427 16.093 57.701 A C4 DG 2 ATOM A C4 DG 1 2 1.00 1 C 27.55 9.035 17.322 53.366 A P DT 3 ATOM A P DT 1 3 1.00 1 P 33.57 10.456 17.017 53.078 A OP1 DT 3 ATOM A OP1 DT 1 3 1.00 1 O 28.25 8.302 18.428 52.715 A OP2 DT 3 ATOM A OP2 DT 1 3 1.00 1 O 27.19 8.218 15.996 53.065 A O5' DT 3 ATOM A O5' DT 1 3 1.00 1 O 23.94 8.827 14.781 53.503 A C5' DT 3 ATOM A C5' DT 1 3 1.00 1 C 22.72 7.874 13.633 53.437 A C4' DT 3 ATOM A C4' DT 1 3 1.00 1 C 24.92 6.656 13.936 54.116 A O4' DT 3 ATOM A O4' DT 1 3 1.00 1 O 23.69 7.540 13.387 52.013 A C3' DT 3 ATOM A C3' DT 1 3 1.00 1 C 24.14 7.933 12.041 51.754 A O3' DT 3 ATOM A O3' DT 1 3 1.00 1 O 24.38 6.063 13.748 51.973 A C2' DT 3 ATOM A C2' DT 1 3 1.00 1 C 18.44 5.570 13.473 53.360 A C1' DT 3 ATOM A C1' DT 1 3 1.00 1 C 16.06 4.432 14.275 53.849 A N1 DT 3 ATOM A N1 DT 1 3 1.00 1 N 10.33 3.493 13.625 54.580 A C2 DT 3 ATOM A C2 DT 1 3 1.00 1 C 21.65 3.504 12.435 54.818 A O2 DT 3 ATOM A O2 DT 1 3 1.00 1 O 19.03 2.480 14.341 55.064 A N3 DT 3 ATOM A N3 DT 1 3 1.00 1 N 18.77 2.311 15.662 54.875 A C4 DT 3 ATOM A C4 DT 1 3 1.00 1 C 24.63 1.351 16.188 55.391 A O4 DT 3 ATOM A O4 DT 1 3 1.00 1 O 16.29 3.310 16.304 54.099 A C5 DT 3 ATOM A C5 DT 1 3 1.00 1 C 15.86 3.203 17.777 53.828 A C7 DT 3 ATOM A C7 DT 1 3 1.00 1 C 13.61 4.343 15.608 53.641 A C6 DT 3 ATOM A C6 DT 1 3 1.00 1 C 30.41 7.767 11.360 50.341 A P DA 4 ATOM A P DA 1 4 1.00 1 P 33.14 8.821 10.338 50.257 A OP1 DA 4 ATOM A OP1 DA 1 4 1.00 1 O 26.97 7.605 12.412 49.307 A OP2 DA 4 ATOM A OP2 DA 1 4 1.00 1 O 24.37 6.409 10.554 50.464 A O5' DA 4 ATOM A O5' DA 1 4 1.00 1 O 13.52 6.401 9.345 51.195 A C5' DA 4 ATOM A C5' DA 1 4 1.00 1 C 14.44 5.058 8.654 51.151 A C4' DA 4 ATOM A C4' DA 1 4 1.00 1 C 20.29 4.103 9.566 51.674 A O4' DA 4 ATOM A O4' DA 1 4 1.00 1 O 23.48 4.637 8.380 49.742 A C3' DA 4 ATOM A C3' DA 1 4 1.00 1 C 34.82 3.964 7.135 49.669 A O3' DA 4 ATOM A O3' DA 1 4 1.00 1 O 19.04 3.729 9.530 49.440 A C2' DA 4 ATOM A C2' DA 1 4 1.00 1 C 12.81 3.076 9.750 50.744 A C1' DA 4 ATOM A C1' DA 1 4 1.00 1 C 7.19 2.769 11.127 50.909 A N9 DA 4 ATOM A N9 DA 1 4 1.00 1 N 6.02 3.405 12.286 50.524 A C8 DA 4 ATOM A C8 DA 1 4 1.00 1 C 15.48 2.785 13.377 50.903 A N7 DA 4 ATOM A N7 DA 1 4 1.00 1 N 7.86 1.666 12.863 51.587 A C5 DA 4 ATOM A C5 DA 1 4 1.00 1 C 9.26 0.578 13.460 52.195 A C6 DA 4 ATOM A C6 DA 1 4 1.00 1 C 12.37 0.411 14.757 52.287 A N6 DA 4 ATOM A N6 DA 1 4 1.00 1 N 9.94 -0.330 12.686 52.726 A N1 DA 4 ATOM A N1 DA 1 4 1.00 1 N 12.87 -0.139 11.378 52.640 A C2 DA 4 ATOM A C2 DA 1 4 1.00 1 C 10.08 0.829 10.643 52.123 A N3 DA 4 ATOM A N3 DA 1 4 1.00 1 N 11.82 1.695 11.499 51.599 A C4 DA 4 ATOM A C4 DA 1 4 1.00 1 C 34.10 3.619 6.513 48.216 A P DC 5 ATOM A P DC 1 5 1.00 1 P 25.13 3.770 5.054 48.365 A OP1 DC 5 ATOM A OP1 DC 1 5 1.00 1 O 31.98 4.351 7.267 47.166 A OP2 DC 5 ATOM A OP2 DC 1 5 1.00 1 O 31.25 2.067 6.858 48.033 A O5' DC 5 ATOM A O5' DC 1 5 1.00 1 O 28.04 1.058 6.246 48.859 A C5' DC 5 ATOM A C5' DC 1 5 1.00 1 C 23.39 -0.275 6.964 48.818 A C4' DC 5 ATOM A C4' DC 1 5 1.00 1 C 27.28 -0.139 8.294 49.278 A O4' DC 5 ATOM A O4' DC 1 5 1.00 1 O 25.87 -0.745 7.051 47.407 A C3' DC 5 ATOM A C3' DC 1 5 1.00 1 C 31.64 -1.712 6.024 47.147 A O3' DC 5 ATOM A O3' DC 1 5 1.00 1 O 21.49 -1.266 8.443 47.316 A C2' DC 5 ATOM A C2' DC 1 5 1.00 1 C 18.11 -1.198 9.007 48.721 A C1' DC 5 ATOM A C1' DC 1 5 1.00 1 C 16.46 -0.771 10.393 48.681 A N1 DC 5 ATOM A N1 DC 1 5 1.00 1 N 20.18 -1.563 11.318 49.299 A C2 DC 5 ATOM A C2 DC 1 5 1.00 1 C 17.14 -2.579 10.957 49.870 A O2 DC 5 ATOM A O2 DC 1 5 1.00 1 O 21.78 -1.215 12.644 49.235 A N3 DC 5 ATOM A N3 DC 1 5 1.00 1 N 20.26 -0.111 13.018 48.558 A C4 DC 5 ATOM A C4 DC 1 5 1.00 1 C 13.30 0.223 14.299 48.512 A N4 DC 5 ATOM A N4 DC 1 5 1.00 1 N 14.40 0.722 12.062 47.904 A C5 DC 5 ATOM A C5 DC 1 5 1.00 1 C 19.31 0.353 10.766 47.994 A C6 DC 5 ATOM A C6 DC 1 5 1.00 1 C 36.19 -2.055 5.699 45.616 A P DG 6 ATOM A P DG 1 6 1.00 1 P 38.04 -2.377 4.260 45.549 A OP1 DG 6 ATOM A OP1 DG 1 6 1.00 1 O 28.55 -1.036 6.283 44.716 A OP2 DG 6 ATOM A OP2 DG 1 6 1.00 1 O 30.80 -3.346 6.556 45.298 A O5' DG 6 ATOM A O5' DG 1 6 1.00 1 O 27.36 -4.641 6.069 45.584 A C5' DG 6 ATOM A C5' DG 1 6 1.00 1 C 25.05 -5.660 6.815 44.773 A C4' DG 6 ATOM A C4' DG 1 6 1.00 1 C 26.66 -5.419 8.200 44.968 A O4' DG 6 ATOM A O4' DG 1 6 1.00 1 O 26.78 -5.517 6.604 43.280 A C3' DG 6 ATOM A C3' DG 1 6 1.00 1 C 31.73 -6.233 5.443 42.810 A O3' DG 6 ATOM A O3' DG 1 6 1.00 1 O 23.05 -6.198 7.856 42.795 A C2' DG 6 ATOM A C2' DG 1 6 1.00 1 C 20.54 -6.147 8.844 43.944 A C1' DG 6 ATOM A C1' DG 1 6 1.00 1 C 14.29 -5.449 10.059 43.595 A N9 DG 6 ATOM A N9 DG 1 6 1.00 1 N 9.14 -4.281 10.179 42.930 A C8 DG 6 ATOM A C8 DG 1 6 1.00 1 C 18.14 -3.930 11.410 42.726 A N7 DG 6 ATOM A N7 DG 1 6 1.00 1 N 18.52 -4.929 12.132 43.338 A C5 DG 6 ATOM A C5 DG 1 6 1.00 1 C 27.61 -5.063 13.503 43.477 A C6 DG 6 ATOM A C6 DG 1 6 1.00 1 C 34.43 -4.294 14.359 43.057 A O6 DG 6 ATOM A O6 DG 1 6 1.00 1 O 26.78 -6.208 13.848 44.180 A N1 DG 6 ATOM A N1 DG 1 6 1.00 1 N 20.65 -7.094 12.977 44.693 A C2 DG 6 ATOM A C2 DG 1 6 1.00 1 C 17.87 -8.123 13.491 45.310 A N2 DG 6 ATOM A N2 DG 1 6 1.00 1 N 25.61 -6.976 11.666 44.577 A N3 DG 6 ATOM A N3 DG 1 6 1.00 1 N 16.73 -5.861 11.318 43.886 A C4 DG 6 ATOM A C4 DG 1 6 1.00 1 C 24.10 3.302 17.127 61.944 A C1 232 7 HETATM B C1 232 2 1.00 1 C 28.30 3.432 18.453 61.680 A N2 232 7 HETATM B N2 232 2 1.00 1 N 23.98 4.522 18.977 61.079 A C3 232 7 HETATM B C3 232 2 1.00 1 C 25.85 5.544 18.179 60.709 A C4 232 7 HETATM B C4 232 2 1.00 1 C 22.44 6.534 15.999 60.567 A C5 232 7 HETATM B C5 232 2 1.00 1 C 17.91 6.475 14.668 60.808 A C6 232 7 HETATM B C6 232 2 1.00 1 C 20.52 5.088 12.805 61.826 A N7 232 7 HETATM B N7 232 2 1.00 1 N 18.01 3.136 11.692 62.947 A C8 232 7 HETATM B C8 232 2 1.00 1 C 22.86 1.936 11.868 63.538 A C9 232 7 HETATM B C9 232 2 1.00 1 C 15.48 2.118 14.306 63.060 A C11 232 7 HETATM B C11 232 2 1.00 1 C 24.02 5.465 16.810 60.978 A C12 232 7 HETATM B C12 232 2 1.00 1 C 18.22 5.368 14.111 61.463 A C13 232 7 HETATM B C13 232 2 1.00 1 C 11.10 3.841 12.771 62.414 A C14 232 7 HETATM B C14 232 2 1.00 1 C 14.23 3.362 14.072 62.465 A C15 232 7 HETATM B C15 232 2 1.00 1 C 16.11 4.293 14.900 61.861 A C16 232 7 HETATM B C16 232 2 1.00 1 C 21.89 4.339 16.258 61.595 A C17 232 7 HETATM B C17 232 2 1.00 1 C 32.60 2.316 19.430 62.028 A C19 232 7 HETATM B C19 232 2 1.00 1 C 22.48 1.388 13.186 63.621 A C10 232 7 HETATM B C10 232 2 1.00 1 C 35.40 0.143 13.247 64.264 A O10 232 7 HETATM B O10 232 2 1.00 1 O 39.05 -0.383 14.523 64.344 A C18 232 7 HETATM B C18 232 2 1.00 1 C 26.89 1.066 19.194 61.146 A C20 232 7 HETATM B C20 232 2 1.00 1 C 33.74 1.204 19.462 59.676 A N21 232 7 HETATM B N21 232 2 1.00 1 N 32.49 -0.013 18.922 59.017 A C22 232 7 HETATM B C22 232 2 1.00 1 C 26.64 0.100 18.946 57.490 A C23 232 7 HETATM B C23 232 2 1.00 1 C 28.70 0.307 20.377 56.996 A C24 232 7 HETATM B C24 232 2 1.00 1 C 25.72 1.429 21.135 57.775 A C25 232 7 HETATM B C25 232 2 1.00 1 C 30.34 1.354 20.911 59.322 A C26 232 7 HETATM B C26 232 2 1.00 1 C 35.95 0.790 20.194 55.573 A C27 232 7 HETATM B C27 232 2 1.00 1 C 40.01 0.000 21.029 54.558 A C28 232 7 HETATM B C28 232 2 0.50 1 C 0.035411 0.020444 0.000000 0.000000 0.040889 0.000000 0.000000 0.000000 0.013747 0.00000 0.00000 0.00000 Williams, L.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 28.240 28.240 72.744 C49 H56 N6 O2 2 761.008 1,3-DI[[[10-METHOXY-7H-PYRIDO[4,3-C]CARBAZOL-2-IUMYL]-ETHYL]-PIPERIDIN-4-YL]-PROPANE BIS INTERCALATOR D232 non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking Y 1 N C Y 2 N N Y 3 N C Y 4 N C Y 5 N C Y 6 N C Y 7 N N Y 8 N C Y 9 N C Y 10 N C Y 11 N C Y 12 N C Y 13 N C Y 14 N C Y 15 N C Y 16 N C N 17 N C Y 18 N C N 19 N O N 20 N C N 21 N C N 22 N N N 23 N C N 24 N C N 25 N C N 26 N C N 27 N C N 28 N C N 29 N C Y 30 N C Y 31 N N Y 32 N C Y 33 N C Y 34 N C Y 35 N C Y 36 N N Y 37 N C Y 38 N C Y 39 N C Y 40 N C Y 41 N C Y 42 N C Y 43 N C Y 44 N C Y 45 N C N 46 N C Y 47 N C N 48 N O N 49 N C N 50 N C N 51 N N N 52 N C N 53 N C N 54 N C N 55 N C N 56 N C N 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N O N 115 N P N 116 N O N 117 N O N 118 N O N 119 N C N 120 R C N 121 N O N 122 S C N 123 N O N 124 N C N 125 R C Y 126 N N Y 127 N C Y 128 N N Y 129 N C Y 130 N C N 131 N N Y 132 N N Y 133 N C Y 134 N N Y 135 N C N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N O N 151 N P N 152 N O N 153 N O N 154 N O N 155 N C N 156 R C N 157 N O N 158 S C N 159 N O N 160 N C N 161 R C N 162 N N N 163 N C N 164 N O N 165 N N N 166 N C N 167 N N N 168 N C N 169 N C N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N O N 185 N P N 186 N O N 187 N O N 188 N O N 189 N C N 190 R C N 191 N O N 192 S C N 193 N O N 194 N C N 195 R C Y 196 N N Y 197 N C Y 198 N N Y 199 N C N 200 N C N 201 N O N 202 N N N 203 N C N 204 N N N 205 N N Y 206 N C N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N O N 222 N P N 223 N O N 224 N O N 225 N O N 226 N C N 227 R C N 228 N O N 229 S C N 230 N O N 231 N C N 232 R C N 233 N N N 234 N C N 235 N O N 236 N N N 237 N C N 238 N O N 239 N C N 240 N C N 241 N C N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H Y 1 N doub Y 2 N sing N 3 N sing Y 4 N sing N 5 N sing Y 6 N doub N 7 N sing Y 8 N sing N 9 N sing Y 10 N doub Y 11 N sing N 12 N sing Y 13 N sing N 14 N sing Y 15 N sing Y 16 N sing N 17 N sing Y 18 N doub Y 19 N sing N 20 N sing Y 21 N sing N 22 N sing Y 23 N sing Y 24 N doub N 25 N sing Y 26 N doub Y 27 N doub Y 28 N doub Y 29 N sing Y 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing Y 64 N doub Y 65 N sing N 66 N sing Y 67 N sing N 68 N sing Y 69 N doub N 70 N sing Y 71 N sing N 72 N sing Y 73 N doub Y 74 N sing N 75 N sing Y 76 N sing N 77 N sing Y 78 N sing Y 79 N sing N 80 N sing Y 81 N doub Y 82 N sing N 83 N sing Y 84 N sing N 85 N sing Y 86 N sing Y 87 N doub N 88 N sing Y 89 N doub Y 90 N doub Y 91 N doub Y 92 N sing Y 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing Y 146 N sing Y 147 N sing Y 148 N doub N 149 N sing Y 150 N sing Y 151 N sing Y 152 N doub N 153 N sing Y 154 N doub N 155 N sing N 156 N sing Y 157 N sing Y 158 N doub N 159 N sing Y 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N doub N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing Y 219 N sing Y 220 N sing Y 221 N doub N 222 N sing Y 223 N sing N 224 N sing Y 225 N doub N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing NE Curr.Med.Chem. 0929-8673 7 59 71 10637357 Effects of cationic charge on three-dimensional structures of intercalative complexes: structure of a bis-intercalated DNA complex solved by MAD phasing. 2000 10.2210/pdb1c9z/pdb pdb_00001c9z 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 300 1 AREA DETECTOR 1995-09-09 UCSD MARK II SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 COMPLEXED WITH BIS-INTERCALATOR D232 1809.217 5'-D(*CP*GP*TP*AP*CP*G)-3' 1 syn polymer 761.008 1,3-DI[[[10-METHOXY-7H-PYRIDO[4,3-C]CARBAZOL-2-IUMYL]-ETHYL]-PIPERIDIN-4-YL]-PROPANE 1 syn non-polymer no no (DC)(DG)(DT)(DA)(DC)(DG) CGTACG A polydeoxyribonucleotide n n n n n n 1 2.22 44.50 VAPOR DIFFUSION, SITTING DROP 6.0 MPD, SPERMINE, MAGNESIUM CHLORIDE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 300K 300 SPERMINE 1 MGCL2 1 SODIUM CACODYLATE 1 MPD 1 MPD 2 -6.552 1 19 A 1 A 6 0.943 A_DC1:DG6_A 1 -6.046 0.589 0.685 -0.378 -6.426 1 19 A 2 A 5 -4.641 A_DG2:DC5_A 2 -2.145 -0.252 0.131 -0.473 4.780 1 20 A 3 A 4 -9.422 A_DT3:DA4_A 3 -10.356 0.246 -0.145 -0.121 -4.780 1 20 A 4 A 3 -9.422 A_DA4:DT3_A 4 -10.356 -0.246 -0.145 -0.121 6.426 1 19 A 5 A 2 -4.641 A_DC5:DG2_A 5 -2.145 0.252 0.131 -0.473 6.553 1 19 A 6 A 1 0.943 A_DG6:DC1_A 6 -6.046 -0.589 0.685 -0.378 6.390 14.413 A A 1 2 2.991 A A 6 5 6.815 0.734 0.078 -0.098 AA_DC1DG2:DC5DG6_AA 1 5.112 -20.833 13.460 -1.768 9.295 3.129 34.907 A A 2 3 -0.555 A A 5 4 3.156 -0.333 -0.633 -0.218 AA_DG2DT3:DA4DC5_AA 2 1.495 -2.493 34.875 -0.315 1.273 3.671 38.509 A A 3 4 14.770 A A 4 3 3.597 9.645 0.000 0.747 AA_DT3DA4:DT3DA4_AA 3 0.000 0.000 37.326 -0.218 0.000 3.129 34.907 A A 4 5 -0.555 A A 3 2 3.156 -0.333 0.633 -0.218 AA_DA4DC5:DG2DT3_AA 4 -1.495 2.493 34.875 -0.315 -1.273 6.390 14.413 A A 5 6 2.991 A A 2 1 6.815 0.734 -0.078 -0.098 AA_DC5DG6:DC1DG2_AA 5 -5.112 20.833 13.460 -1.768 -9.294 chem_comp_atom chem_comp_bond database_2 pdbx_unobs_or_zero_occ_atoms struct_conn struct_site pdbx_database_status repository Initial release Version format compliance Version format compliance Database references Advisory Data collection Database references Derived calculations Other 1 0 2000-04-02 1 1 2008-04-27 1 2 2011-07-13 1 3 2011-12-07 1 4 2024-02-07 1 5 2024-04-17 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _pdbx_database_status.status_code_sf DITERCALINIUM-CGCG RCSB Y RCSB 1999-08-03 REL REL 232 1,3-DI[[[10-METHOXY-7H-PYRIDO[4,3-C]CARBAZOL-2-IUMYL]-ETHYL]-PIPERIDIN-4-YL]-PROPANE SYNTHETIC sample 232 7 2 232 232 7 A C 1 n 1 DC 1 A G 2 n 2 DG 2 A T 3 n 3 DT 3 A A 4 n 4 DA 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 11_556 -x+y,y,-z+3/2 crystal symmetry operation 0.0000000000 0.0000000000 109.1160000000 1 A 232 7 B 232 1 -7.98 0.80 109.40 101.42 A A A O5' C5' C4' DG DG DG 2 2 2 N 1 4.38 0.60 106.00 110.38 A A A O4' C4' C3' DG DG DG 2 2 2 N 1 -5.31 0.80 105.90 100.59 A A A O4' C1' C2' DT DT DT 3 3 3 N 1 -4.73 0.60 122.30 117.57 A A A N3 C2 O2 DT DT DT 3 3 3 N 1 -5.93 0.70 108.00 102.07 A A A O4' C1' N9 DA DA DA 4 4 4 N 1 3.59 0.50 129.30 132.89 A A A N1 C2 N3 DA DA DA 4 4 4 N 1 -4.69 0.50 110.60 105.91 A A A C2 N3 C4 DA DA DA 4 4 4 N 1 A A C5' C4' DC DC 1 1 0.043 0.007 1.512 1.555 N 1 A A C4' C3' DG DG 2 2 -0.064 0.010 1.521 1.457 N 1 A A C6 N1 DA DA 4 4 -0.045 0.007 1.351 1.306 N 1 A A N9 C4 DA DA 4 4 -0.044 0.006 1.374 1.330 N 0.1961000 0.1961000 0.1961000 2.4 10 99 5220 4682 90 RANDOM 1 4. 2. PARKINSON ET AL. 2.4 10 0 149 29 120 0 21 2.4 10.0 1C9Z 5220 4698 2.0 4.0 0.0510000 1 9.2 3.2 91 0.0600000 2.4 2.51 1 4.2 84 phasing MADSYS refinement X-PLOR 3.851 data reduction SDMS data scaling SDMS D232-CGTACG 1 N N 2 N N covale 1.533 none A 232 7 B C27 232 1_555 A 232 7 B C28 232 11_556 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 A DG 6 A N1 DG 6 11_556 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 A DG 6 A O6 DG 6 11_556 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 A DG 6 A N2 DG 6 11_556 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 A DC 5 A N3 DC 5 11_556 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 A DC 5 A O2 DC 5 11_556 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 A DC 5 A N4 DC 5 11_556 hydrog WATSON-CRICK A DT 3 A N3 DT 3 1_555 A DA 4 A N1 DA 4 11_556 hydrog WATSON-CRICK A DT 3 A O4 DT 3 1_555 A DA 4 A N6 DA 4 11_556 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 A DT 3 A N3 DT 3 11_556 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 A DT 3 A O4 DT 3 11_556 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 A DG 2 A N1 DG 2 11_556 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 A DG 2 A O6 DG 2 11_556 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 A DG 2 A N2 DG 2 11_556 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 A DC 1 A N3 DC 1 11_556 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 A DC 1 A O2 DC 1 11_556 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 A DC 1 A N4 DC 1 11_556 DNA DNA, INTERCALATOR, INTERCALATION, DRUG, MAJOR GROOVE 1C9Z PDB 1 1C9Z 1 6 1C9Z 1 6 1C9Z A 1 1 6 BINDING SITE FOR RESIDUE 232 A 7 A 232 7 Software 7 A DC 1 A DC 1 7 1_555 A DG 2 A DG 2 7 1_555 A DT 3 A DT 3 7 1_555 A DA 4 A DA 4 7 5_565 A DC 5 A DC 5 7 11_556 A DG 6 A DG 6 7 11_556 A DG 6 A DG 6 7 5_555 179 hexagonal P 65 2 2