0.020088
0.000000
0.000000
0.000000
0.013028
0.000000
0.000000
0.000000
0.028457
0.00000
0.00000
0.00000
Su, S.
Gao, Y.-G.
Robinson, H.
Shriver, J.W.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
49.780
76.760
35.140
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
Y
90
N
C
N
91
N
N
Y
92
N
N
Y
93
N
C
Y
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
O
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
C
N
116
R
C
N
117
N
O
N
118
S
C
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
N
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
C
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
P
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
C
N
150
R
C
N
151
N
O
N
152
S
C
N
153
N
O
N
154
N
C
N
155
R
C
Y
156
N
N
Y
157
N
C
Y
158
N
N
Y
159
N
C
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
N
Y
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
N
192
R
C
N
193
N
N
N
194
N
C
N
195
N
O
N
196
N
N
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
O
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
S
C
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
N
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
C
N
324
N
S
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
N
366
N
C
N
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
N
383
N
O
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
R
C
N
397
N
O
N
398
N
C
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
N
N
410
S
C
N
411
N
C
N
412
N
O
N
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
N
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
N
N
437
S
C
N
438
N
C
N
439
N
O
N
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
N
447
N
O
N
448
N
O
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
N
N
461
S
C
N
462
N
C
N
463
N
O
N
464
N
C
N
465
N
C
N
466
N
C
N
467
N
O
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
doub
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
doub
N
106
N
sing
Y
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
doub
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
Y
344
N
doub
Y
345
N
sing
Y
346
N
sing
N
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
doub
N
351
N
sing
Y
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
Y
413
N
doub
Y
414
N
sing
Y
415
N
sing
N
416
N
sing
Y
417
N
doub
Y
418
N
sing
Y
419
N
sing
N
420
N
sing
Y
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
doub
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
Y
441
N
doub
Y
442
N
sing
Y
443
N
sing
N
444
N
sing
Y
445
N
doub
N
446
N
sing
Y
447
N
doub
N
448
N
sing
Y
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
doub
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
303
395
403
10.1006/jmbi.2000.4112
11031116
Crystal structures of the chromosomal proteins Sso7d/Sac7d bound to DNA containing T-G mismatched base-pairs
2000
UK
Nature
NATUAS
0006
0028-0836
392
202
205
10.1038/32455
9515968
The hyperthermophile chromosomal protein Sac7d sharply kinks DNA.
1998
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
5
782
786
10.1038/1822
9731772
The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA.
1998
10.2210/pdb1ca5/pdb
pdb_00001ca5
C3' of C108, chain B has incorrect chirality
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
COLLIMATORS
IMAGE PLATE
1996-08-15
RIGAKU
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
2426.617
5'-D(*GP*TP*GP*AP*TP*CP*AP*C)-3'
2
syn
polymer
7626.914
CHROMOSOMAL PROTEIN SAC7D
1
nat
polymer
18.015
water
102
nat
water
no
no
(DG)(DT)(DG)(DA)(DT)(DC)(DA)(DC)
GTGATCAC
B,C
polydeoxyribonucleotide
no
no
MVKVKFKYKGEEKEVDTSKIKKVWRVGKMVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK
MVKVKFKYKGEEKEVDTSKIKKVWRVGKMVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Sulfolobus
sample
2285
Sulfolobus acidocaldarius
1
2.7
53
VAPOR DIFFUSION, HANGING DROP
6.5
pH 6.5, VAPOR DIFFUSION, HANGING DROP
-12.333
1
B
101
C
116
11.863
B_DG101:DC116_C
1
8.705
-1.444
-0.411
0.332
23.578
1
20
B
102
C
115
-6.159
B_DT102:DA115_C
2
5.198
0.116
-0.448
0.112
-25.335
1
19
B
103
C
114
-1.373
B_DG103:DC114_C
3
0.036
-0.254
-1.022
-0.154
-4.001
1
20
B
104
C
113
5.841
B_DA104:DT113_C
4
-3.542
0.208
-0.234
0.229
6.380
1
20
B
105
C
112
-3.911
B_DT105:DA112_C
5
-10.717
0.307
-0.299
-0.410
7.310
1
19
B
106
C
111
-3.178
B_DC106:DG111_C
6
-15.359
-0.245
-0.686
0.011
1.677
1
20
B
107
C
110
-6.501
B_DA107:DT110_C
7
-12.249
0.407
-0.285
0.018
7.819
1
19
B
108
C
109
-4.122
B_DC108:DG109_C
8
-1.311
0.797
-0.570
-0.212
2.419
32.383
B
B
101
102
8.627
C
C
116
115
2.480
4.788
-0.908
0.420
BB_DG101DT102:DA115DC116_CC
1
3.100
-5.587
31.890
0.115
2.041
3.776
65.515
B
B
102
103
71.957
C
C
115
114
5.412
61.858
-0.228
1.985
BB_DT102DG103:DC114DA115_CC
2
3.879
-4.512
22.374
-3.988
0.576
2.609
27.858
B
B
103
104
28.933
C
C
114
113
2.743
12.902
-0.083
0.945
BB_DG103DA104:DT113DC114_CC
3
-12.001
26.913
21.663
-0.893
-2.485
3.116
26.359
B
B
104
105
-2.484
C
C
113
112
3.113
-1.132
-0.556
-0.689
BB_DA104DT105:DA112DT113_CC
4
1.003
-2.201
26.317
-1.222
1.475
3.113
34.137
B
B
105
106
16.088
C
C
112
111
3.213
9.272
0.158
0.175
BB_DT105DC106:DG111DA112_CC
5
6.700
-11.625
32.217
-1.166
0.789
3.530
38.847
B
B
106
107
3.161
C
C
111
110
3.501
2.102
0.687
0.740
BB_DC106DA107:DT110DG111_CC
6
-0.274
0.412
38.792
0.838
-1.069
3.215
35.195
B
B
107
108
-5.113
C
C
110
109
3.125
-3.078
0.906
-0.100
BB_DA107DC108:DG109DT110_CC
7
4.878
-8.101
34.734
0.282
-0.789
software
citation
citation_author
pdbx_entity_src_syn
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Advisory
Refinement description
Data collection
Database references
Source and taxonomy
Data collection
Database references
Refinement description
1
0
2000-02-23
1
1
2008-04-26
1
2
2011-07-13
1
3
2011-12-28
1
4
2017-10-04
1
5
2019-11-06
1
6
2023-08-09
_citation.page_last
_citation.pdbx_database_id_PubMed
_citation.title
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
RCSB
1999-02-23
REL
HOH
water
32630
synthetic construct
sample
1AZP
PDB ENTRY 1AZP
PDB
experimental model
HOH
1005
3
HOH
HOH
1005
B
HOH
1014
3
HOH
HOH
1014
B
HOH
1015
3
HOH
HOH
1015
B
HOH
1022
3
HOH
HOH
1022
B
HOH
1025
3
HOH
HOH
1025
B
HOH
1028
3
HOH
HOH
1028
B
HOH
1040
3
HOH
HOH
1040
B
HOH
1044
3
HOH
HOH
1044
B
HOH
1045
3
HOH
HOH
1045
B
HOH
1055
3
HOH
HOH
1055
B
HOH
1057
3
HOH
HOH
1057
B
HOH
1070
3
HOH
HOH
1070
B
HOH
1078
3
HOH
HOH
1078
B
HOH
1082
3
HOH
HOH
1082
B
HOH
1095
3
HOH
HOH
1095
B
HOH
1096
3
HOH
HOH
1096
B
HOH
1001
3
HOH
HOH
1001
C
HOH
1004
3
HOH
HOH
1004
C
HOH
1006
3
HOH
HOH
1006
C
HOH
1007
3
HOH
HOH
1007
C
HOH
1008
3
HOH
HOH
1008
C
HOH
1016
3
HOH
HOH
1016
C
HOH
1017
3
HOH
HOH
1017
C
HOH
1019
3
HOH
HOH
1019
C
HOH
1020
3
HOH
HOH
1020
C
HOH
1027
3
HOH
HOH
1027
C
HOH
1029
3
HOH
HOH
1029
C
HOH
1033
3
HOH
HOH
1033
C
HOH
1036
3
HOH
HOH
1036
C
HOH
1043
3
HOH
HOH
1043
C
HOH
1048
3
HOH
HOH
1048
C
HOH
1052
3
HOH
HOH
1052
C
HOH
1060
3
HOH
HOH
1060
C
HOH
1064
3
HOH
HOH
1064
C
HOH
1067
3
HOH
HOH
1067
C
HOH
1074
3
HOH
HOH
1074
C
HOH
1075
3
HOH
HOH
1075
C
HOH
1076
3
HOH
HOH
1076
C
HOH
1087
3
HOH
HOH
1087
C
HOH
1092
3
HOH
HOH
1092
C
HOH
1098
3
HOH
HOH
1098
C
HOH
1002
3
HOH
HOH
1002
A
HOH
1003
3
HOH
HOH
1003
A
HOH
1009
3
HOH
HOH
1009
A
HOH
1010
3
HOH
HOH
1010
A
HOH
1011
3
HOH
HOH
1011
A
HOH
1012
3
HOH
HOH
1012
A
HOH
1013
3
HOH
HOH
1013
A
HOH
1018
3
HOH
HOH
1018
A
HOH
1021
3
HOH
HOH
1021
A
HOH
1023
3
HOH
HOH
1023
A
HOH
1024
3
HOH
HOH
1024
A
HOH
1026
3
HOH
HOH
1026
A
HOH
1030
3
HOH
HOH
1030
A
HOH
1031
3
HOH
HOH
1031
A
HOH
1032
3
HOH
HOH
1032
A
HOH
1034
3
HOH
HOH
1034
A
HOH
1035
3
HOH
HOH
1035
A
HOH
1037
3
HOH
HOH
1037
A
HOH
1038
3
HOH
HOH
1038
A
HOH
1039
3
HOH
HOH
1039
A
HOH
1041
3
HOH
HOH
1041
A
HOH
1042
3
HOH
HOH
1042
A
HOH
1046
3
HOH
HOH
1046
A
HOH
1047
3
HOH
HOH
1047
A
HOH
1049
3
HOH
HOH
1049
A
HOH
1050
3
HOH
HOH
1050
A
HOH
1051
3
HOH
HOH
1051
A
HOH
1053
3
HOH
HOH
1053
A
HOH
1054
3
HOH
HOH
1054
A
HOH
1056
3
HOH
HOH
1056
A
HOH
1058
3
HOH
HOH
1058
A
HOH
1059
3
HOH
HOH
1059
A
HOH
1061
3
HOH
HOH
1061
A
HOH
1062
3
HOH
HOH
1062
A
HOH
1063
3
HOH
HOH
1063
A
HOH
1065
3
HOH
HOH
1065
A
HOH
1066
3
HOH
HOH
1066
A
HOH
1068
3
HOH
HOH
1068
A
HOH
1069
3
HOH
HOH
1069
A
HOH
1071
3
HOH
HOH
1071
A
HOH
1072
3
HOH
HOH
1072
A
HOH
1073
3
HOH
HOH
1073
A
HOH
1077
3
HOH
HOH
1077
A
HOH
1079
3
HOH
HOH
1079
A
HOH
1080
3
HOH
HOH
1080
A
HOH
1081
3
HOH
HOH
1081
A
HOH
1083
3
HOH
HOH
1083
A
HOH
1084
3
HOH
HOH
1084
A
HOH
1085
3
HOH
HOH
1085
A
HOH
1086
3
HOH
HOH
1086
A
HOH
1088
3
HOH
HOH
1088
A
HOH
1089
3
HOH
HOH
1089
A
HOH
1090
3
HOH
HOH
1090
A
HOH
1091
3
HOH
HOH
1091
A
HOH
1093
3
HOH
HOH
1093
A
HOH
1094
3
HOH
HOH
1094
A
HOH
1097
3
HOH
HOH
1097
A
HOH
1099
3
HOH
HOH
1099
A
HOH
1100
3
HOH
HOH
1100
A
HOH
1101
3
HOH
HOH
1101
A
HOH
1102
3
HOH
HOH
1102
A
G
101
n
1
DG
101
B
T
102
n
2
DT
102
B
G
103
n
3
DG
103
B
A
104
n
4
DA
104
B
T
105
n
5
DT
105
B
C
106
n
6
DC
106
B
A
107
n
7
DA
107
B
C
108
n
8
DC
108
B
G
109
n
1
DG
109
C
T
110
n
2
DT
110
C
G
111
n
3
DG
111
C
A
112
n
4
DA
112
C
T
113
n
5
DT
113
C
C
114
n
6
DC
114
C
A
115
n
7
DA
115
C
C
116
n
8
DC
116
C
n
1
0
A
VAL
2
n
2
VAL
2
A
LYS
3
n
3
LYS
3
A
VAL
4
n
4
VAL
4
A
LYS
5
n
5
LYS
5
A
PHE
6
n
6
PHE
6
A
LYS
7
n
7
LYS
7
A
TYR
8
n
8
TYR
8
A
LYS
9
n
9
LYS
9
A
GLY
10
n
10
GLY
10
A
GLU
11
n
11
GLU
11
A
GLU
12
n
12
GLU
12
A
LYS
13
n
13
LYS
13
A
GLU
14
n
14
GLU
14
A
VAL
15
n
15
VAL
15
A
ASP
16
n
16
ASP
16
A
THR
17
n
17
THR
17
A
SER
18
n
18
SER
18
A
LYS
19
n
19
LYS
19
A
ILE
20
n
20
ILE
20
A
LYS
21
n
21
LYS
21
A
LYS
22
n
22
LYS
22
A
VAL
23
n
23
VAL
23
A
TRP
24
n
24
TRP
24
A
ARG
25
n
25
ARG
25
A
VAL
26
n
26
VAL
26
A
GLY
27
n
27
GLY
27
A
LYS
28
n
28
LYS
28
A
MET
29
n
29
MET
29
A
VAL
30
n
30
VAL
30
A
SER
31
n
31
SER
31
A
PHE
32
n
32
PHE
32
A
THR
33
n
33
THR
33
A
TYR
34
n
34
TYR
34
A
ASP
35
n
35
ASP
35
A
ASP
36
n
36
ASP
36
A
ASN
37
n
37
ASN
37
A
GLY
38
n
38
GLY
38
A
LYS
39
n
39
LYS
39
A
THR
40
n
40
THR
40
A
GLY
41
n
41
GLY
41
A
ARG
42
n
42
ARG
42
A
GLY
43
n
43
GLY
43
A
ALA
44
n
44
ALA
44
A
VAL
45
n
45
VAL
45
A
SER
46
n
46
SER
46
A
GLU
47
n
47
GLU
47
A
LYS
48
n
48
LYS
48
A
ASP
49
n
49
ASP
49
A
ALA
50
n
50
ALA
50
A
PRO
51
n
51
PRO
51
A
LYS
52
n
52
LYS
52
A
GLU
53
n
53
GLU
53
A
LEU
54
n
54
LEU
54
A
LEU
55
n
55
LEU
55
A
ASP
56
n
56
ASP
56
A
MET
57
n
57
MET
57
A
LEU
58
n
58
LEU
58
A
ALA
59
n
59
ALA
59
A
ARG
60
n
60
ARG
60
A
ALA
61
n
61
ALA
61
A
GLU
62
n
62
GLU
62
A
ARG
63
n
63
ARG
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
LYS
66
n
66
LYS
66
A
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
4
C
O
VAL
4
A
N
VAL
15
C
N
VAL
15
A
O
TRP
24
C
O
TRP
24
A
N
SER
31
C
N
SER
31
A
O
VAL
30
C
O
VAL
30
A
N
VAL
45
C
N
VAL
45
1
A
MET
0
C
MET
1
1
Y
1
B
C3'
DC
108
WRONG HAND
1
C
C
O4'
H2
DC
HOH
116
1092
1.49
1
B
C
O4
H62
DT
DA
105
112
1.56
1
B
B
O3'
H2
DC
HOH
108
1070
1.57
1
C
C
O6
H1
DG
HOH
109
1019
1.60
1
B
DA
104
0.055
SIDE CHAIN
1
B
DC
106
0.085
SIDE CHAIN
1
C
DC
114
0.063
SIDE CHAIN
1
A
LYS
9
71.44
-106.51
1
A
GLU
12
63.53
150.38
1
A
LYS
21
-68.78
-74.05
1
A
TYR
34
-151.06
-153.33
1
A
ASP
35
80.84
-178.72
1
A
ASP
36
-171.02
-57.05
1
A
LYS
39
-63.21
-178.97
1
A
ASP
49
-76.52
22.58
1
A
LYS
52
-38.51
-39.12
PARHCSDX.PRO
TOPHCSDX.PRO
PARAM_NDBX_HIGH.DNA
TOPH11.WAT
PARAM11.WAT
TOP_NDBX.DNA
44.4
0.276
0.016
0.19
2.2
8.0
286
5216
5.5
73.8
RANDOM
10000000.00
0.00100
1
RESTRAINED
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 1AZP
0.44
0.30
5.00
0.47
0.46
2.2
8.0
102
949
0
322
525
0.012
1.7
24.9
3.47
2.88
1.50
4.87
2.00
3.91
2.00
5.73
2.50
0.34
0.060
0.33
2.33
32
689
6
4.4
62.2
25.6
1.93
40
1CA5
6720
1
0.63
1
2
62.7
1.93
2.01
1
30
model building
X-PLOR
refinement
X-PLOR
3.851
phasing
X-PLOR
INTERCALATION SITE OF HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SSO7D/SAC7D BOUND TO DNA
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
A
PRO
51
C
PRO
51
HELX_P
A
GLU
62
C
GLU
62
1
1
12
hydrog
DG-DC PAIR
B
DG
101
A
N1
DG
1
1_555
C
DC
116
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
B
DT
102
A
N3
DT
2
1_555
C
DA
115
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
B
DT
102
A
O4
DT
2
1_555
C
DA
115
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
B
DG
103
A
N1
DG
3
1_555
C
DC
114
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
103
A
N2
DG
3
1_555
C
DC
114
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
103
A
O6
DG
3
1_555
C
DC
114
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
B
DA
104
A
N1
DA
4
1_555
C
DT
113
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
B
DA
104
A
N6
DA
4
1_555
C
DT
113
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
B
DT
105
A
N3
DT
5
1_555
C
DA
112
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
B
DT
105
A
O4
DT
5
1_555
C
DA
112
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
B
DC
106
A
N3
DC
6
1_555
C
DG
111
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
106
A
N4
DC
6
1_555
C
DG
111
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
106
A
O2
DC
6
1_555
C
DG
111
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
B
DA
107
A
N1
DA
7
1_555
C
DT
110
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
B
DA
107
A
N6
DA
7
1_555
C
DT
110
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
B
DC
108
A
N3
DC
8
1_555
C
DG
109
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
108
A
N4
DC
8
1_555
C
DG
109
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
108
A
O2
DC
8
1_555
C
DG
109
B
N2
DG
1
1_555
STRUCTURAL PROTEIN/DNA
HYPERTHERMOPHILE, CHROMOSOMAL PROTEIN, SSO7D, SAC7D, DNA BINDING, STRUCTURAL PROTEIN-DNA COMPLEX
DN71_SULAC
UNP
2
P13123
1CA5
PDB
1
1CA5
1
65
1CA5
2
66
P13123
A
1
2
66
101
108
1CA5
101
108
1CA5
B
2
1
8
109
116
1CA5
109
116
1CA5
C
2
1
8
2
3
anti-parallel
anti-parallel
anti-parallel
A
LYS
3
C
LYS
3
A
PHE
6
C
PHE
6
A
LYS
13
C
LYS
13
A
ASP
16
C
ASP
16
A
VAL
23
C
VAL
23
A
GLY
27
C
GLY
27
A
LYS
28
C
LYS
28
A
TYR
34
C
TYR
34
A
GLY
41
C
GLY
41
A
SER
46
C
SER
46
19
orthorhombic
P 21 21 21