0.020088 0.000000 0.000000 0.000000 0.013028 0.000000 0.000000 0.000000 0.028457 0.00000 0.00000 0.00000 Su, S. Gao, Y.-G. Robinson, H. Shriver, J.W. Wang, A.H.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 49.780 76.760 35.140 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C Y 90 N C N 91 N N Y 92 N N Y 93 N C Y 94 N N Y 95 N C N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 N C N 121 R C N 122 N N N 123 N C N 124 N O N 125 N N N 126 N C N 127 N N N 128 N C N 129 N C N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N P N 146 N O N 147 N O N 148 N O N 149 N C N 150 R C N 151 N O N 152 S C N 153 N O N 154 N C N 155 R C Y 156 N N Y 157 N C Y 158 N N Y 159 N C N 160 N C N 161 N O N 162 N N N 163 N C N 164 N N N 165 N N Y 166 N C N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N O N 182 N P N 183 N O N 184 N O N 185 N O N 186 N C N 187 R C N 188 N O N 189 S C N 190 N O N 191 N C N 192 R C N 193 N N N 194 N C N 195 N O N 196 N N N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N C N 224 N O N 225 N O N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 N C N 238 N C N 239 N O N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N O N 247 N H N 248 N H N 249 N N N 250 S C N 251 N C N 252 N O N 253 S C N 254 N C N 255 N C N 256 N C N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 S C N 273 N C N 274 N O N 275 N C N 276 N C N 277 N C N 278 N C N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C N 298 N C N 299 N C N 300 N C N 301 N N N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C N 323 N C N 324 N S N 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C Y 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N N N 362 S C N 363 N C N 364 N O N 365 N C N 366 N C N 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N N N 379 S C N 380 N C N 381 N O N 382 N C N 383 N O N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N N 393 S C N 394 N C N 395 N O N 396 R C N 397 N O N 398 N C N 399 N O N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N N N 410 S C N 411 N C N 412 N O N 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N N Y 418 N C Y 419 N C Y 420 N C Y 421 N C Y 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N N N 437 S C N 438 N C N 439 N O N 440 N C Y 441 N C Y 442 N C Y 443 N C Y 444 N C Y 445 N C Y 446 N C N 447 N O N 448 N O N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N N N 461 S C N 462 N C N 463 N O N 464 N C N 465 N C N 466 N C N 467 N O N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing Y 93 N sing Y 94 N sing Y 95 N doub N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N doub N 102 N sing N 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing Y 166 N sing Y 167 N sing Y 168 N doub N 169 N sing Y 170 N sing N 171 N sing Y 172 N doub N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing Y 344 N doub Y 345 N sing Y 346 N sing N 347 N sing Y 348 N doub N 349 N sing Y 350 N doub N 351 N sing Y 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N doub N 409 N sing N 410 N sing N 411 N sing N 412 N sing Y 413 N doub Y 414 N sing Y 415 N sing N 416 N sing Y 417 N doub Y 418 N sing Y 419 N sing N 420 N sing Y 421 N sing Y 422 N doub N 423 N sing Y 424 N doub N 425 N sing Y 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N doub N 437 N sing N 438 N sing N 439 N sing N 440 N sing Y 441 N doub Y 442 N sing Y 443 N sing N 444 N sing Y 445 N doub N 446 N sing Y 447 N doub N 448 N sing Y 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N doub N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 303 395 403 10.1006/jmbi.2000.4112 11031116 Crystal structures of the chromosomal proteins Sso7d/Sac7d bound to DNA containing T-G mismatched base-pairs 2000 UK Nature NATUAS 0006 0028-0836 392 202 205 10.1038/32455 9515968 The hyperthermophile chromosomal protein Sac7d sharply kinks DNA. 1998 US Nat.Struct.Biol. NSBIEW 2024 1072-8368 5 782 786 10.1038/1822 9731772 The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA. 1998 10.2210/pdb1ca5/pdb pdb_00001ca5 C3' of C108, chain B has incorrect chirality 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 COLLIMATORS IMAGE PLATE 1996-08-15 RIGAKU GRAPHITE SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 2426.617 5'-D(*GP*TP*GP*AP*TP*CP*AP*C)-3' 2 syn polymer 7626.914 CHROMOSOMAL PROTEIN SAC7D 1 nat polymer 18.015 water 102 nat water no no (DG)(DT)(DG)(DA)(DT)(DC)(DA)(DC) GTGATCAC B,C polydeoxyribonucleotide no no MVKVKFKYKGEEKEVDTSKIKKVWRVGKMVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK MVKVKFKYKGEEKEVDTSKIKKVWRVGKMVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Sulfolobus sample 2285 Sulfolobus acidocaldarius 1 2.7 53 VAPOR DIFFUSION, HANGING DROP 6.5 pH 6.5, VAPOR DIFFUSION, HANGING DROP -12.333 1 B 101 C 116 11.863 B_DG101:DC116_C 1 8.705 -1.444 -0.411 0.332 23.578 1 20 B 102 C 115 -6.159 B_DT102:DA115_C 2 5.198 0.116 -0.448 0.112 -25.335 1 19 B 103 C 114 -1.373 B_DG103:DC114_C 3 0.036 -0.254 -1.022 -0.154 -4.001 1 20 B 104 C 113 5.841 B_DA104:DT113_C 4 -3.542 0.208 -0.234 0.229 6.380 1 20 B 105 C 112 -3.911 B_DT105:DA112_C 5 -10.717 0.307 -0.299 -0.410 7.310 1 19 B 106 C 111 -3.178 B_DC106:DG111_C 6 -15.359 -0.245 -0.686 0.011 1.677 1 20 B 107 C 110 -6.501 B_DA107:DT110_C 7 -12.249 0.407 -0.285 0.018 7.819 1 19 B 108 C 109 -4.122 B_DC108:DG109_C 8 -1.311 0.797 -0.570 -0.212 2.419 32.383 B B 101 102 8.627 C C 116 115 2.480 4.788 -0.908 0.420 BB_DG101DT102:DA115DC116_CC 1 3.100 -5.587 31.890 0.115 2.041 3.776 65.515 B B 102 103 71.957 C C 115 114 5.412 61.858 -0.228 1.985 BB_DT102DG103:DC114DA115_CC 2 3.879 -4.512 22.374 -3.988 0.576 2.609 27.858 B B 103 104 28.933 C C 114 113 2.743 12.902 -0.083 0.945 BB_DG103DA104:DT113DC114_CC 3 -12.001 26.913 21.663 -0.893 -2.485 3.116 26.359 B B 104 105 -2.484 C C 113 112 3.113 -1.132 -0.556 -0.689 BB_DA104DT105:DA112DT113_CC 4 1.003 -2.201 26.317 -1.222 1.475 3.113 34.137 B B 105 106 16.088 C C 112 111 3.213 9.272 0.158 0.175 BB_DT105DC106:DG111DA112_CC 5 6.700 -11.625 32.217 -1.166 0.789 3.530 38.847 B B 106 107 3.161 C C 111 110 3.501 2.102 0.687 0.740 BB_DC106DA107:DT110DG111_CC 6 -0.274 0.412 38.792 0.838 -1.069 3.215 35.195 B B 107 108 -5.113 C C 110 109 3.125 -3.078 0.906 -0.100 BB_DA107DC108:DG109DT110_CC 7 4.878 -8.101 34.734 0.282 -0.789 software citation citation_author pdbx_entity_src_syn chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Advisory Refinement description Data collection Database references Source and taxonomy Data collection Database references Refinement description 1 0 2000-02-23 1 1 2008-04-26 1 2 2011-07-13 1 3 2011-12-28 1 4 2017-10-04 1 5 2019-11-06 1 6 2023-08-09 _citation.page_last _citation.pdbx_database_id_PubMed _citation.title _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y RCSB 1999-02-23 REL HOH water 32630 synthetic construct sample 1AZP PDB ENTRY 1AZP PDB experimental model HOH 1005 3 HOH HOH 1005 B HOH 1014 3 HOH HOH 1014 B HOH 1015 3 HOH HOH 1015 B HOH 1022 3 HOH HOH 1022 B HOH 1025 3 HOH HOH 1025 B HOH 1028 3 HOH HOH 1028 B HOH 1040 3 HOH HOH 1040 B HOH 1044 3 HOH HOH 1044 B HOH 1045 3 HOH HOH 1045 B HOH 1055 3 HOH HOH 1055 B HOH 1057 3 HOH HOH 1057 B HOH 1070 3 HOH HOH 1070 B HOH 1078 3 HOH HOH 1078 B HOH 1082 3 HOH HOH 1082 B HOH 1095 3 HOH HOH 1095 B HOH 1096 3 HOH HOH 1096 B HOH 1001 3 HOH HOH 1001 C HOH 1004 3 HOH HOH 1004 C HOH 1006 3 HOH HOH 1006 C HOH 1007 3 HOH HOH 1007 C HOH 1008 3 HOH HOH 1008 C HOH 1016 3 HOH HOH 1016 C HOH 1017 3 HOH HOH 1017 C HOH 1019 3 HOH HOH 1019 C HOH 1020 3 HOH HOH 1020 C HOH 1027 3 HOH HOH 1027 C HOH 1029 3 HOH HOH 1029 C HOH 1033 3 HOH HOH 1033 C HOH 1036 3 HOH HOH 1036 C HOH 1043 3 HOH HOH 1043 C HOH 1048 3 HOH HOH 1048 C HOH 1052 3 HOH HOH 1052 C HOH 1060 3 HOH HOH 1060 C HOH 1064 3 HOH HOH 1064 C HOH 1067 3 HOH HOH 1067 C HOH 1074 3 HOH HOH 1074 C HOH 1075 3 HOH HOH 1075 C HOH 1076 3 HOH HOH 1076 C HOH 1087 3 HOH HOH 1087 C HOH 1092 3 HOH HOH 1092 C HOH 1098 3 HOH HOH 1098 C HOH 1002 3 HOH HOH 1002 A HOH 1003 3 HOH HOH 1003 A HOH 1009 3 HOH HOH 1009 A HOH 1010 3 HOH HOH 1010 A HOH 1011 3 HOH HOH 1011 A HOH 1012 3 HOH HOH 1012 A HOH 1013 3 HOH HOH 1013 A HOH 1018 3 HOH HOH 1018 A HOH 1021 3 HOH HOH 1021 A HOH 1023 3 HOH HOH 1023 A HOH 1024 3 HOH HOH 1024 A HOH 1026 3 HOH HOH 1026 A HOH 1030 3 HOH HOH 1030 A HOH 1031 3 HOH HOH 1031 A HOH 1032 3 HOH HOH 1032 A HOH 1034 3 HOH HOH 1034 A HOH 1035 3 HOH HOH 1035 A HOH 1037 3 HOH HOH 1037 A HOH 1038 3 HOH HOH 1038 A HOH 1039 3 HOH HOH 1039 A HOH 1041 3 HOH HOH 1041 A HOH 1042 3 HOH HOH 1042 A HOH 1046 3 HOH HOH 1046 A HOH 1047 3 HOH HOH 1047 A HOH 1049 3 HOH HOH 1049 A HOH 1050 3 HOH HOH 1050 A HOH 1051 3 HOH HOH 1051 A HOH 1053 3 HOH HOH 1053 A HOH 1054 3 HOH HOH 1054 A HOH 1056 3 HOH HOH 1056 A HOH 1058 3 HOH HOH 1058 A HOH 1059 3 HOH HOH 1059 A HOH 1061 3 HOH HOH 1061 A HOH 1062 3 HOH HOH 1062 A HOH 1063 3 HOH HOH 1063 A HOH 1065 3 HOH HOH 1065 A HOH 1066 3 HOH HOH 1066 A HOH 1068 3 HOH HOH 1068 A HOH 1069 3 HOH HOH 1069 A HOH 1071 3 HOH HOH 1071 A HOH 1072 3 HOH HOH 1072 A HOH 1073 3 HOH HOH 1073 A HOH 1077 3 HOH HOH 1077 A HOH 1079 3 HOH HOH 1079 A HOH 1080 3 HOH HOH 1080 A HOH 1081 3 HOH HOH 1081 A HOH 1083 3 HOH HOH 1083 A HOH 1084 3 HOH HOH 1084 A HOH 1085 3 HOH HOH 1085 A HOH 1086 3 HOH HOH 1086 A HOH 1088 3 HOH HOH 1088 A HOH 1089 3 HOH HOH 1089 A HOH 1090 3 HOH HOH 1090 A HOH 1091 3 HOH HOH 1091 A HOH 1093 3 HOH HOH 1093 A HOH 1094 3 HOH HOH 1094 A HOH 1097 3 HOH HOH 1097 A HOH 1099 3 HOH HOH 1099 A HOH 1100 3 HOH HOH 1100 A HOH 1101 3 HOH HOH 1101 A HOH 1102 3 HOH HOH 1102 A G 101 n 1 DG 101 B T 102 n 2 DT 102 B G 103 n 3 DG 103 B A 104 n 4 DA 104 B T 105 n 5 DT 105 B C 106 n 6 DC 106 B A 107 n 7 DA 107 B C 108 n 8 DC 108 B G 109 n 1 DG 109 C T 110 n 2 DT 110 C G 111 n 3 DG 111 C A 112 n 4 DA 112 C T 113 n 5 DT 113 C C 114 n 6 DC 114 C A 115 n 7 DA 115 C C 116 n 8 DC 116 C n 1 0 A VAL 2 n 2 VAL 2 A LYS 3 n 3 LYS 3 A VAL 4 n 4 VAL 4 A LYS 5 n 5 LYS 5 A PHE 6 n 6 PHE 6 A LYS 7 n 7 LYS 7 A TYR 8 n 8 TYR 8 A LYS 9 n 9 LYS 9 A GLY 10 n 10 GLY 10 A GLU 11 n 11 GLU 11 A GLU 12 n 12 GLU 12 A LYS 13 n 13 LYS 13 A GLU 14 n 14 GLU 14 A VAL 15 n 15 VAL 15 A ASP 16 n 16 ASP 16 A THR 17 n 17 THR 17 A SER 18 n 18 SER 18 A LYS 19 n 19 LYS 19 A ILE 20 n 20 ILE 20 A LYS 21 n 21 LYS 21 A LYS 22 n 22 LYS 22 A VAL 23 n 23 VAL 23 A TRP 24 n 24 TRP 24 A ARG 25 n 25 ARG 25 A VAL 26 n 26 VAL 26 A GLY 27 n 27 GLY 27 A LYS 28 n 28 LYS 28 A MET 29 n 29 MET 29 A VAL 30 n 30 VAL 30 A SER 31 n 31 SER 31 A PHE 32 n 32 PHE 32 A THR 33 n 33 THR 33 A TYR 34 n 34 TYR 34 A ASP 35 n 35 ASP 35 A ASP 36 n 36 ASP 36 A ASN 37 n 37 ASN 37 A GLY 38 n 38 GLY 38 A LYS 39 n 39 LYS 39 A THR 40 n 40 THR 40 A GLY 41 n 41 GLY 41 A ARG 42 n 42 ARG 42 A GLY 43 n 43 GLY 43 A ALA 44 n 44 ALA 44 A VAL 45 n 45 VAL 45 A SER 46 n 46 SER 46 A GLU 47 n 47 GLU 47 A LYS 48 n 48 LYS 48 A ASP 49 n 49 ASP 49 A ALA 50 n 50 ALA 50 A PRO 51 n 51 PRO 51 A LYS 52 n 52 LYS 52 A GLU 53 n 53 GLU 53 A LEU 54 n 54 LEU 54 A LEU 55 n 55 LEU 55 A ASP 56 n 56 ASP 56 A MET 57 n 57 MET 57 A LEU 58 n 58 LEU 58 A ALA 59 n 59 ALA 59 A ARG 60 n 60 ARG 60 A ALA 61 n 61 ALA 61 A GLU 62 n 62 GLU 62 A ARG 63 n 63 ARG 63 A GLU 64 n 64 GLU 64 A LYS 65 n 65 LYS 65 A LYS 66 n 66 LYS 66 A author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 4 C O VAL 4 A N VAL 15 C N VAL 15 A O TRP 24 C O TRP 24 A N SER 31 C N SER 31 A O VAL 30 C O VAL 30 A N VAL 45 C N VAL 45 1 A MET 0 C MET 1 1 Y 1 B C3' DC 108 WRONG HAND 1 C C O4' H2 DC HOH 116 1092 1.49 1 B C O4 H62 DT DA 105 112 1.56 1 B B O3' H2 DC HOH 108 1070 1.57 1 C C O6 H1 DG HOH 109 1019 1.60 1 B DA 104 0.055 SIDE CHAIN 1 B DC 106 0.085 SIDE CHAIN 1 C DC 114 0.063 SIDE CHAIN 1 A LYS 9 71.44 -106.51 1 A GLU 12 63.53 150.38 1 A LYS 21 -68.78 -74.05 1 A TYR 34 -151.06 -153.33 1 A ASP 35 80.84 -178.72 1 A ASP 36 -171.02 -57.05 1 A LYS 39 -63.21 -178.97 1 A ASP 49 -76.52 22.58 1 A LYS 52 -38.51 -39.12 PARHCSDX.PRO TOPHCSDX.PRO PARAM_NDBX_HIGH.DNA TOPH11.WAT PARAM11.WAT TOP_NDBX.DNA 44.4 0.276 0.016 0.19 2.2 8.0 286 5216 5.5 73.8 RANDOM 10000000.00 0.00100 1 RESTRAINED THROUGHOUT 2.0 MOLECULAR REPLACEMENT PDB ENTRY 1AZP 0.44 0.30 5.00 0.47 0.46 2.2 8.0 102 949 0 322 525 0.012 1.7 24.9 3.47 2.88 1.50 4.87 2.00 3.91 2.00 5.73 2.50 0.34 0.060 0.33 2.33 32 689 6 4.4 62.2 25.6 1.93 40 1CA5 6720 1 0.63 1 2 62.7 1.93 2.01 1 30 model building X-PLOR refinement X-PLOR 3.851 phasing X-PLOR INTERCALATION SITE OF HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SSO7D/SAC7D BOUND TO DNA 1 N N 1 N N 2 N N 3 N N 3 N N 3 N N A PRO 51 C PRO 51 HELX_P A GLU 62 C GLU 62 1 1 12 hydrog DG-DC PAIR B DG 101 A N1 DG 1 1_555 C DC 116 B O2 DC 8 1_555 hydrog WATSON-CRICK B DT 102 A N3 DT 2 1_555 C DA 115 B N1 DA 7 1_555 hydrog WATSON-CRICK B DT 102 A O4 DT 2 1_555 C DA 115 B N6 DA 7 1_555 hydrog WATSON-CRICK B DG 103 A N1 DG 3 1_555 C DC 114 B N3 DC 6 1_555 hydrog WATSON-CRICK B DG 103 A N2 DG 3 1_555 C DC 114 B O2 DC 6 1_555 hydrog WATSON-CRICK B DG 103 A O6 DG 3 1_555 C DC 114 B N4 DC 6 1_555 hydrog WATSON-CRICK B DA 104 A N1 DA 4 1_555 C DT 113 B N3 DT 5 1_555 hydrog WATSON-CRICK B DA 104 A N6 DA 4 1_555 C DT 113 B O4 DT 5 1_555 hydrog WATSON-CRICK B DT 105 A N3 DT 5 1_555 C DA 112 B N1 DA 4 1_555 hydrog WATSON-CRICK B DT 105 A O4 DT 5 1_555 C DA 112 B N6 DA 4 1_555 hydrog WATSON-CRICK B DC 106 A N3 DC 6 1_555 C DG 111 B N1 DG 3 1_555 hydrog WATSON-CRICK B DC 106 A N4 DC 6 1_555 C DG 111 B O6 DG 3 1_555 hydrog WATSON-CRICK B DC 106 A O2 DC 6 1_555 C DG 111 B N2 DG 3 1_555 hydrog WATSON-CRICK B DA 107 A N1 DA 7 1_555 C DT 110 B N3 DT 2 1_555 hydrog WATSON-CRICK B DA 107 A N6 DA 7 1_555 C DT 110 B O4 DT 2 1_555 hydrog WATSON-CRICK B DC 108 A N3 DC 8 1_555 C DG 109 B N1 DG 1 1_555 hydrog WATSON-CRICK B DC 108 A N4 DC 8 1_555 C DG 109 B O6 DG 1 1_555 hydrog WATSON-CRICK B DC 108 A O2 DC 8 1_555 C DG 109 B N2 DG 1 1_555 STRUCTURAL PROTEIN/DNA HYPERTHERMOPHILE, CHROMOSOMAL PROTEIN, SSO7D, SAC7D, DNA BINDING, STRUCTURAL PROTEIN-DNA COMPLEX DN71_SULAC UNP 2 P13123 1CA5 PDB 1 1CA5 1 65 1CA5 2 66 P13123 A 1 2 66 101 108 1CA5 101 108 1CA5 B 2 1 8 109 116 1CA5 109 116 1CA5 C 2 1 8 2 3 anti-parallel anti-parallel anti-parallel A LYS 3 C LYS 3 A PHE 6 C PHE 6 A LYS 13 C LYS 13 A ASP 16 C ASP 16 A VAL 23 C VAL 23 A GLY 27 C GLY 27 A LYS 28 C LYS 28 A TYR 34 C TYR 34 A GLY 41 C GLY 41 A SER 46 C SER 46 19 orthorhombic P 21 21 21