0.029586 0.000000 0.000000 0.000000 0.028986 0.000000 0.000000 0.000000 0.023148 0.00000 0.00000 0.00000 Day, M.W. Hsu, B.T. Joshua-Tor, L. Park, J.B. Zhou, Z.H. Adams, M.W.W. Rees, D.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 33.800 34.500 43.200 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking Fe 3 55.845 FE (III) ION non-polymer C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N O N 21 N N N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N N N 32 S C N 33 N C N 34 N O N 35 N C N 36 N C N 37 N O N 38 N O N 39 N O N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N N N 48 R C N 49 N C N 50 N O N 51 N C N 52 N S N 53 N O N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N FE N 62 N N N 63 S C N 64 N C N 65 N O N 66 N C N 67 N C N 68 N C N 69 N O N 70 N O N 71 N O N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 N C N 83 N C N 84 N O N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N O N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 S C N 99 N C N 100 N C N 101 N C N 102 N O N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N N N 117 S C N 118 N C N 119 N O N 120 N C N 121 N C N 122 N C N 123 N C N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C N 143 N C N 144 N C N 145 N C N 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N N N 164 S C N 165 N C N 166 N O N 167 N C Y 168 N C Y 169 N C Y 170 N C Y 171 N C Y 172 N C Y 173 N C N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C N 191 N C N 192 N C N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N N N 204 S C N 205 N C N 206 N O N 207 N C N 208 N O N 209 N O N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 R C N 222 N O N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 N C Y 239 N C Y 240 N C Y 241 N C Y 242 N N Y 243 N C Y 244 N C Y 245 N C Y 246 N C Y 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C Y 271 N C N 272 N O N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N N N 286 S C N 287 N C N 288 N O N 289 N C N 290 N C N 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N doub N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N doub N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N doub N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N doub N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing Y 163 N doub Y 164 N sing Y 165 N sing N 166 N sing Y 167 N doub N 168 N sing Y 169 N doub N 170 N sing Y 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing Y 232 N doub Y 233 N sing Y 234 N sing N 235 N sing Y 236 N doub Y 237 N sing Y 238 N sing N 239 N sing Y 240 N sing Y 241 N doub N 242 N sing Y 243 N doub N 244 N sing Y 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing Y 260 N doub Y 261 N sing Y 262 N sing N 263 N sing Y 264 N doub N 265 N sing Y 266 N doub N 267 N sing Y 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing US Protein Sci. PRCIEI 0795 0961-8368 1 1494 1507 1303768 X-ray crystal structures of the oxidized and reduced forms of the rubredoxin from the marine hyperthermophilic archaebacterium Pyrococcus furiosus. 1992 10.2210/pdb1cad/pdb pdb_00001cad 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 5900.532 RUBREDOXIN 1 man polymer 55.845 FE (III) ION 1 syn non-polymer 18.015 water 36 nat water no no AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pyrococcus sample 2261 Pyrococcus furiosus 2.13 42.32 pdbx_database_status struct_conf struct_conf_type chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Derived calculations Other Data collection Database references Derived calculations 1 0 1993-10-31 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 1 4 2024-02-07 _pdbx_database_status.process_site _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1992-05-18 REL FE FE (III) ION HOH water FE 54 2 FE FE 54 A HOH 101 3 HOH HOH 101 A HOH 102 3 HOH HOH 102 A HOH 103 3 HOH HOH 103 A HOH 104 3 HOH HOH 104 A HOH 105 3 HOH HOH 105 A HOH 106 3 HOH HOH 106 A HOH 107 3 HOH HOH 107 A HOH 109 3 HOH HOH 109 A HOH 110 3 HOH HOH 110 A HOH 111 3 HOH HOH 111 A HOH 112 3 HOH HOH 112 A HOH 113 3 HOH HOH 113 A HOH 114 3 HOH HOH 114 A HOH 115 3 HOH HOH 115 A HOH 116 3 HOH HOH 116 A HOH 117 3 HOH HOH 117 A HOH 118 3 HOH HOH 118 A HOH 119 3 HOH HOH 119 A HOH 120 3 HOH HOH 120 A HOH 121 3 HOH HOH 121 A HOH 122 3 HOH HOH 122 A HOH 123 3 HOH HOH 123 A HOH 124 3 HOH HOH 124 A HOH 125 3 HOH HOH 125 A HOH 126 3 HOH HOH 126 A HOH 127 3 HOH HOH 127 A HOH 128 3 HOH HOH 128 A HOH 129 3 HOH HOH 129 A HOH 130 3 HOH HOH 130 A HOH 131 3 HOH HOH 131 A HOH 132 3 HOH HOH 132 A HOH 133 3 HOH HOH 133 A HOH 134 3 HOH HOH 134 A HOH 135 3 HOH HOH 135 A HOH 136 3 HOH HOH 136 A HOH 137 3 HOH HOH 137 A ALA 1 n 1 ALA 1 A LYS 2 n 2 LYS 2 A TRP 3 n 3 TRP 3 A VAL 4 n 4 VAL 4 A CYS 5 n 5 CYS 5 A LYS 6 n 6 LYS 6 A ILE 7 n 7 ILE 7 A CYS 8 n 8 CYS 8 A GLY 9 n 9 GLY 9 A TYR 10 n 10 TYR 10 A ILE 11 n 11 ILE 11 A TYR 12 n 12 TYR 12 A ASP 13 n 13 ASP 13 A GLU 14 n 14 GLU 14 A ASP 15 n 15 ASP 15 A ALA 16 n 16 ALA 16 A GLY 17 n 17 GLY 17 A ASP 18 n 18 ASP 18 A PRO 19 n 19 PRO 19 A ASP 20 n 20 ASP 20 A ASN 21 n 21 ASN 21 A GLY 22 n 22 GLY 22 A ILE 23 n 23 ILE 23 A SER 24 n 24 SER 24 A PRO 25 n 25 PRO 25 A GLY 26 n 26 GLY 26 A THR 27 n 27 THR 27 A LYS 28 n 28 LYS 28 A PHE 29 n 29 PHE 29 A GLU 30 n 30 GLU 30 A GLU 31 n 31 GLU 31 A LEU 32 n 32 LEU 32 A PRO 33 n 33 PRO 33 A ASP 34 n 34 ASP 34 A ASP 35 n 35 ASP 35 A TRP 36 n 36 TRP 36 A VAL 37 n 37 VAL 37 A CYS 38 n 38 CYS 38 A PRO 39 n 39 PRO 39 A ILE 40 n 40 ILE 40 A CYS 41 n 41 CYS 41 A GLY 42 n 42 GLY 42 A ALA 43 n 43 ALA 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A SER 46 n 46 SER 46 A GLU 47 n 47 GLU 47 A PHE 48 n 48 PHE 48 A GLU 49 n 49 GLU 49 A LYS 50 n 50 LYS 50 A LEU 51 n 51 LEU 51 A GLU 52 n 52 GLU 52 A ASP 53 n 53 ASP 53 A author_defined_assembly 1 monomeric A CYS 5 A SG CYS 5 1_555 A FE 54 B FE FE 1_555 A CYS 8 A SG CYS 8 1_555 112.4 A CYS 5 A SG CYS 5 1_555 A FE 54 B FE FE 1_555 A CYS 38 A SG CYS 38 1_555 113.4 A CYS 8 A SG CYS 8 1_555 A FE 54 B FE FE 1_555 A CYS 38 A SG CYS 38 1_555 102.6 A CYS 5 A SG CYS 5 1_555 A FE 54 B FE FE 1_555 A CYS 41 A SG CYS 41 1_555 104.7 A CYS 8 A SG CYS 8 1_555 A FE 54 B FE FE 1_555 A CYS 41 A SG CYS 41 1_555 111.4 A CYS 38 A SG CYS 38 1_555 A FE 54 B FE FE 1_555 A CYS 41 A SG CYS 41 1_555 112.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 12 A O TYR 12 A N TRP 3 A N TRP 3 A N LYS 6 A N LYS 6 A O GLU 47 A O GLU 47 1 A ASP 18 14.19 1 A ASP 20 15.56 1 A PRO 25 13.94 1 A LEU 32 -11.45 1 A ASP 35 10.27 1 A LEU 51 14.86 1 A GLU 14 0.071 SIDE CHAIN 1 A ASP 20 0.080 SIDE CHAIN 1 A ASP 53 0.086 SIDE CHAIN 1 6.05 0.80 106.30 112.35 A A A CD1 CG CD2 TRP TRP TRP 3 3 3 N 1 -4.87 0.80 107.30 102.43 A A A CE2 CD2 CG TRP TRP TRP 3 3 3 N 1 6.34 0.80 106.30 112.64 A A A CD1 CG CD2 TRP TRP TRP 36 36 36 N 1 -5.36 0.80 107.30 101.94 A A A CE2 CD2 CG TRP TRP TRP 36 36 36 N 0.1930000 0.1930000 1.8 1 1.8 36 450 1 0 413 0.012 1.95 model building X-PLOR refinement X-PLOR phasing X-PLOR X-RAY CRYSTAL STRUCTURES OF THE OXIDIZED AND REDUCED FORMS OF THE RUBREDOXIN FROM THE MARINE HYPERTHERMOPHILIC ARCHAEBACTERIUM PYROCOCCUS FURIOSUS 1 N N 2 N N 3 N N A ASP 13 A ASP 13 HELX_P A GLY 17 A GLY 17 5 HC1 5 A ASP 18 A ASP 18 HELX_P A GLY 22 A GLY 22 5 HC2 5 A LYS 28 A LYS 28 HELX_P A LEU 32 A LEU 32 5 HC3 5 A PRO 44 A PRO 44 HELX_P A PHE 48 A PHE 48 5 HC4 5 metalc 2.339 A CYS 5 A SG CYS 5 1_555 A FE 54 B FE FE 1_555 metalc 2.290 A CYS 8 A SG CYS 8 1_555 A FE 54 B FE FE 1_555 metalc 2.356 A CYS 38 A SG CYS 38 1_555 A FE 54 B FE FE 1_555 metalc 2.294 A CYS 41 A SG CYS 41 1_555 A FE 54 B FE FE 1_555 ELECTRON TRANSPORT ELECTRON TRANSPORT RUBR_PYRFU UNP 1 1 P24297 AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED 1 53 1CAD 1 53 P24297 A 1 1 53 3 anti-parallel anti-parallel A GLY 9 A GLY 9 A GLU 14 A GLU 14 A ALA 1 A ALA 1 A LYS 6 A LYS 6 A GLU 47 A GLU 47 A LEU 51 A LEU 51 BINDING SITE FOR RESIDUE FE A 54 A FE 54 Software 4 A CYS 5 A CYS 5 4 1_555 A CYS 8 A CYS 8 4 1_555 A CYS 38 A CYS 38 4 1_555 A CYS 41 A CYS 41 4 1_555 19 P 21 21 21