.049261
0.000000
0.000000
0.000000
.084890
0.000000
0.000000
0.000000
.032852
0.00000
0.00000
0.00000
Arnott, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
20.300
11.780
30.440
C6 H10 O7
194.139
beta-D-glucopyranuronic acid
beta-D-glucuronic acid; D-glucuronic acid; glucuronic acid
D-saccharide, beta linking
C6 H12 O6
180.156
beta-D-glucopyranose
beta-D-glucose; D-glucose; glucose
D-saccharide, beta linking
C9 H14 O8
250.203
n
4,6-O-[(1S)-1-carboxyethylidene]-beta-D-glucopyranose
4,6-O-(1-CARBOXYETHYLIDENE)-BETA-D-GLUCOSE; 4,6-O-[(1S)-1-carboxyethylidene]-beta-D-glucose; 4,6-O-[(1S)-1-carboxyethylidene]-D-glucose; 4,6-O-[(1S)-1-carboxyethylidene]-glucose
D-saccharide, beta linking
C6 H12 O6
180.156
beta-D-galactopyranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
N
1
R
C
N
2
R
C
N
3
S
C
N
4
S
C
N
5
S
C
N
6
N
C
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
O
N
11
N
O
N
12
N
O
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
R
C
N
25
S
C
N
26
S
C
N
27
R
C
N
28
N
C
N
29
R
C
N
30
N
O
N
31
N
O
N
32
N
O
N
33
N
O
N
34
N
O
N
35
N
O
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
R
C
N
49
R
C
N
50
R
C
N
51
S
C
N
52
R
C
N
53
N
C
N
54
S
C
N
55
N
C
N
56
N
C
N
57
N
O
N
58
N
O
N
59
N
O
N
60
N
O
N
61
N
O
N
62
N
O
N
63
N
O
N
64
N
O
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
R
C
N
80
R
C
N
81
S
C
N
82
R
C
N
83
R
C
N
84
N
C
N
85
N
O
N
86
N
O
N
87
N
O
N
88
N
O
N
89
N
O
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
S
C
N
104
S
C
N
105
S
C
N
106
S
C
N
107
R
C
N
108
N
C
N
109
N
O
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
doub
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
109
373
391
10.1016/S0022-2836(77)80018-1
319241
Conformation and molecular organization in fibers of the capsular polysaccharide from Escherichia coli M41 mutant.
1977
DK
Acta Crystallogr.,Sect.A
ACACEQ
0621
0108-7673
34
3
Lals, a Linked-Atom Least-Squares Reciprocal-Space Refinement System Incorporating Stereochemical Restraints to Supplement Sparse Diffraction Data
1978
10.2210/pdb1cap/pdb
pdb_00001cap
GAL A 5 HAS WRONG CHIRALITY AT ATOM C1
.100000
0.000000
0.000000
0.000000
.100000
0.000000
0.000000
0.000000
.100000
0.00000
0.00000
0.00000
1
1
1.0
2131.765
alpha-D-mannopyranose-(1-3)-beta-D-glucopyranose-(1-3)-[4,6-O-[(1S)-1-carboxyethylidene]-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-4)]beta-D-glucopyranuronic acid-(1-3)-beta-D-galactopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-glucopyranose-(1-3)-[4,6-O-[(1S)-1-carboxyethylidene]-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-4)]beta-D-glucopyranuronic acid-(1-3)-beta-D-galactopyranose
1
man
branched
atom_site
chem_comp
database_PDB_caveat
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly
pdbx_struct_oper_list
pdbx_unobs_or_zero_occ_atoms
pdbx_validate_chiral
pdbx_validate_symm_contact
struct_asym
struct_conn
struct_ref
struct_ref_seq
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Advisory
Atomic model
Data collection
Database references
Derived calculations
Other
Structure summary
Data collection
Database references
Structure summary
1
0
1980-03-28
1
1
2008-03-21
1
2
2011-07-13
2
0
2020-07-29
2
1
2024-02-07
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_pdbx_database_status.process_site
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_validate_chiral.auth_seq_id
_pdbx_validate_symm_contact.auth_atom_id_1
_pdbx_validate_symm_contact.auth_atom_id_2
_pdbx_validate_symm_contact.auth_comp_id_1
_pdbx_validate_symm_contact.auth_comp_id_2
_pdbx_validate_symm_contact.auth_seq_id_1
_pdbx_validate_symm_contact.auth_seq_id_2
_pdbx_validate_symm_contact.site_symmetry_2
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
GAL
10
n
A
GAL
1
GCU
9
n
A
BDP
2
GLC
8
n
A
BGC
3
MAN
7
n
A
MAN
4
GAL
4
n
A
GAL
5
GCU
3
n
A
BDP
6
GLC
2
n
A
BGC
7
MAN
1
n
A
MAN
8
MAN
5
n
A
MAN
9
CEG
6
n
A
CEG
10
MAN
11
n
A
MAN
11
CEG
12
n
A
CEG
12
DGlcpAb
b-D-glucopyranuronic acid
b-D-GlcpA
GlcA
DGlcpb
b-D-glucopyranose
b-D-Glcp
Glc
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
DManpa
a-D-mannopyranose
a-D-Manp
Man
Y
BNL
1978-05-23
REL
oligosaccharide
WURCS=2.0/5,12,11/[a2112h-1b_1-5][a2122A-1b_1-5][a2122h-1b_1-5][a1122h-1a_1-5][a2122h-1b_1-5_4n2-6n1*1OC^RO*2/3CO/6=O/3C]/1-2-3-4-1-2-3-4-4-5-4-5/a3-b1_b3-c1_b4-k1_c3-d1_d2-e1_e3-f1_f3-g1_f4-i1_g3-h1_i2-j1_k2-l1
1
PDB2Glycan
1.1.0
WURCS
[][D-1-deoxy-Galp]{[(3+1)][b-D-GlcpA]{[(3+1)][b-D-Glcp]{[(3+1)][a-D-Manp]{[(2+1)][a-D-Galp]{[(3+1)][b-D-GlcpA]{[(3+1)][b-D-Glcp]{[(3+1)][a-D-Manp]{}}[(4+1)][a-D-Manp]{[(2+1)]{}}}}}}[(4+1)][a-D-Manp]{[(2+1)]{}}}}
1
PDB-CARE
LINUCS
C1
O3
BDP
GAL
2
1
1
O1
HO3
sing
C1
O3
BGC
BDP
3
2
1
O1
HO3
sing
C1
O3
MAN
BGC
4
3
1
O1
HO3
sing
C1
O2
GAL
MAN
5
4
1
O1
HO2
sing
C1
O3
BDP
GAL
6
5
1
O1
HO3
sing
C1
O3
BGC
BDP
7
6
1
O1
HO3
sing
C1
O3
MAN
BGC
8
7
1
O1
HO3
sing
C1
O4
MAN
BDP
9
6
1
O1
HO4
sing
C1
O2
CEG
MAN
10
9
1
O1
HO2
sing
C1
O4
MAN
BDP
11
2
1
O1
HO4
sing
C1
O2
CEG
MAN
12
11
1
O1
HO2
sing
n
n
n
n
n
n
n
n
n
n
n
n
author_defined_assembly
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
O1
GAL
1
A
O1
GAL
1
1
N
1
A
C1
GAL
5
WRONG HAND
1
A
A
C2
C2
MAN
MAN
4
8
0.62
1_555
3_556
1
A
A
C4
O4
GAL
BGC
5
7
0.62
1_555
3_556
1
A
A
C4
O4
GAL
BGC
1
3
0.62
1_555
3_545
1
A
A
C1
O4
BGC
MAN
7
9
0.63
1_555
3_556
1
A
A
C1
O4
BGC
MAN
3
11
0.63
1_555
3_545
1
A
A
C1
C1
GAL
MAN
5
8
0.68
1_555
3_556
1
A
A
C1
C1
GAL
MAN
1
4
0.68
1_555
3_545
1
A
A
H62
C9
MAN
CEG
8
12
0.68
1_555
3_546
1
A
A
H62
C9
MAN
CEG
4
10
0.68
1_555
3_556
1
A
A
H1
O5
GAL
MAN
5
8
0.72
1_555
3_556
1
A
A
H1
O5
GAL
MAN
1
4
0.72
1_555
3_545
1
A
A
O5
H1
GAL
MAN
5
8
0.74
1_555
3_556
1
A
A
O5
H1
GAL
MAN
1
4
0.74
1_555
3_545
1
A
A
H62
H9A
MAN
CEG
4
10
0.75
1_555
3_556
1
A
A
H62
H9A
MAN
CEG
8
12
0.75
1_555
3_546
1
A
A
H2
C2
GAL
BGC
1
3
0.78
1_555
3_545
1
A
A
H2
C2
GAL
BGC
5
7
0.78
1_555
3_556
1
A
A
C6
O6
GAL
GAL
1
5
0.82
1_555
3_545
1
A
A
O6
C6
GAL
GAL
1
5
0.82
1_555
3_545
1
A
A
C2
O3
GAL
BGC
5
7
0.83
1_555
3_556
1
A
A
C2
O3
GAL
BGC
1
3
0.83
1_555
3_545
1
A
A
C4
C4
GAL
BGC
1
3
0.83
1_555
3_545
1
A
A
C4
C4
GAL
BGC
5
7
0.83
1_555
3_556
1
A
A
C2
O2
MAN
MAN
4
8
0.84
1_555
3_556
1
A
A
O2
C2
MAN
MAN
4
8
0.84
1_555
3_556
1
A
A
C3
H4
GAL
BGC
1
3
0.87
1_555
3_545
1
A
A
C3
H4
GAL
BGC
5
7
0.87
1_555
3_556
1
A
A
C1
O3
GAL
BGC
1
3
0.87
1_555
3_545
1
A
A
C1
O3
GAL
BGC
5
7
0.87
1_555
3_556
1
A
A
H2
C3
GAL
BGC
5
7
0.90
1_555
3_556
1
A
A
H2
C3
GAL
BGC
1
3
0.90
1_555
3_545
1
A
A
O3
O3
MAN
MAN
4
8
0.92
1_555
3_556
1
A
A
O2
C2
BDP
MAN
6
9
0.97
1_555
3_556
1
A
A
O2
C2
BDP
MAN
2
11
0.97
1_555
3_545
1
A
A
C3
O3
BDP
MAN
6
9
0.97
1_555
3_556
1
A
A
C3
O3
BDP
MAN
2
11
0.97
1_555
3_545
1
A
A
O6
H62
GAL
GAL
1
5
0.98
1_555
3_545
1
A
A
H62
O6
GAL
GAL
1
5
0.98
1_555
3_545
1
A
A
C2
C3
GAL
BGC
1
3
0.98
1_555
3_545
1
A
A
C2
C3
GAL
BGC
5
7
0.98
1_555
3_556
1
A
A
H4
O4
GAL
BGC
5
7
1.02
1_555
3_556
1
A
A
H4
O4
GAL
BGC
1
3
1.02
1_555
3_545
1
A
A
O3
H4
GAL
BGC
5
7
1.03
1_555
3_556
1
A
A
O3
H4
GAL
BGC
1
3
1.03
1_555
3_545
1
A
A
C2
C3
BDP
MAN
2
11
1.04
1_555
3_545
1
A
A
C2
C3
BDP
MAN
6
9
1.04
1_555
3_556
1
A
A
C3
O3
MAN
MAN
4
8
1.05
1_555
3_556
1
A
A
O3
C3
MAN
MAN
4
8
1.05
1_555
3_556
1
A
A
O4
H5
GAL
BGC
1
3
1.06
1_555
3_545
1
A
A
O4
H5
GAL
BGC
5
7
1.06
1_555
3_556
1
A
A
O5
O4
BGC
MAN
3
11
1.09
1_555
3_545
1
A
A
O5
O4
BGC
MAN
7
9
1.09
1_555
3_556
1
A
A
C2
H3
BDP
MAN
2
11
1.09
1_555
3_545
1
A
A
C2
H3
BDP
MAN
6
9
1.09
1_555
3_556
1
A
A
C3
C3
BDP
MAN
2
11
1.10
1_555
3_545
1
A
A
C3
C3
BDP
MAN
6
9
1.10
1_555
3_556
1
A
A
H1
O4
BGC
MAN
7
9
1.10
1_555
3_556
1
A
A
H1
O4
BGC
MAN
3
11
1.10
1_555
3_545
1
A
A
O4
C5
GAL
BGC
1
3
1.11
1_555
3_545
1
A
A
O4
C5
GAL
BGC
5
7
1.11
1_555
3_556
1
A
A
O6
O3
BGC
CEG
3
10
1.11
1_555
2_454
1
A
A
O6
O3
BGC
CEG
7
12
1.11
1_555
2_555
1
A
A
C1
O2
MAN
MAN
4
8
1.12
1_555
3_556
1
A
A
O2
C1
MAN
MAN
4
8
1.12
1_555
3_556
1
A
A
H3
H5
GAL
CEG
5
10
1.13
1_555
3_556
1
A
A
H3
H5
GAL
CEG
1
12
1.13
1_555
3_545
1
A
A
C5
H9B
MAN
CEG
8
12
1.13
1_555
3_546
1
A
A
C5
H9B
MAN
CEG
4
10
1.13
1_555
3_556
1
A
A
H3
O3
BDP
MAN
6
9
1.15
1_555
3_556
1
A
A
H3
O3
BDP
MAN
2
11
1.15
1_555
3_545
1
A
A
C3
C4
GAL
BGC
1
3
1.19
1_555
3_545
1
A
A
C3
C4
GAL
BGC
5
7
1.19
1_555
3_556
1
A
A
O6
O6
GAL
GAL
1
5
1.19
1_555
3_545
1
A
A
O3
H2
GAL
MAN
1
11
1.22
1_555
3_545
1
A
A
O3
H2
GAL
MAN
5
9
1.22
1_555
3_556
1
A
A
H2
O2
MAN
MAN
4
8
1.24
1_555
3_556
1
A
A
O2
H2
MAN
MAN
4
8
1.24
1_555
3_556
1
A
A
O2
C1
BDP
MAN
2
11
1.24
1_555
3_545
1
A
A
O2
C1
BDP
MAN
6
9
1.24
1_555
3_556
1
A
A
C5
O4
GAL
BGC
1
3
1.25
1_555
3_545
1
A
A
C5
O4
GAL
BGC
5
7
1.25
1_555
3_556
1
A
A
O4
C4
GAL
BGC
1
3
1.25
1_555
3_545
1
A
A
O4
C4
GAL
BGC
5
7
1.25
1_555
3_556
1
A
A
C1
H2
BDP
MAN
2
11
1.27
1_555
3_545
1
A
A
C1
H2
BDP
MAN
6
9
1.27
1_555
3_556
1
A
A
H1
C1
GAL
MAN
5
8
1.29
1_555
3_556
1
A
A
H1
C1
GAL
MAN
1
4
1.29
1_555
3_545
1
A
A
H4
O4
MAN
CEG
4
10
1.30
1_555
3_556
1
A
A
H4
O4
MAN
CEG
8
12
1.30
1_555
3_546
1
A
A
H2
H3
BDP
MAN
2
11
1.32
1_555
3_545
1
A
A
H2
H3
BDP
MAN
6
9
1.32
1_555
3_556
1
A
A
C4
H9B
MAN
CEG
8
12
1.32
1_555
3_546
1
A
A
C4
H9B
MAN
CEG
4
10
1.32
1_555
3_556
1
A
A
H3
C3
BDP
MAN
6
9
1.32
1_555
3_556
1
A
A
H3
C3
BDP
MAN
2
11
1.32
1_555
3_545
1
A
A
C3
H3
BDP
MAN
2
11
1.36
1_555
3_545
1
A
A
C3
H3
BDP
MAN
6
9
1.36
1_555
3_556
1
A
A
C6
H9A
MAN
CEG
8
12
1.36
1_555
3_546
1
A
A
C6
H9A
MAN
CEG
4
10
1.36
1_555
3_556
1
A
A
H1
C5
GAL
MAN
5
8
1.37
1_555
3_556
1
A
A
H1
C5
GAL
MAN
1
4
1.37
1_555
3_545
1
A
A
O2
C3
BDP
MAN
6
9
1.39
1_555
3_556
1
A
A
O2
C3
BDP
MAN
2
11
1.39
1_555
3_545
1
A
A
C6
H9B
MAN
CEG
8
12
1.39
1_555
3_546
1
A
A
C6
H9B
MAN
CEG
4
10
1.39
1_555
3_556
1
A
A
O5
C1
GAL
MAN
5
8
1.40
1_555
3_556
1
A
A
O5
C1
GAL
MAN
1
4
1.40
1_555
3_545
1
A
A
H1
O2
BDP
MAN
2
11
1.40
1_555
3_545
1
A
A
H1
O2
BDP
MAN
6
9
1.40
1_555
3_556
1
A
A
C1
O2
GAL
MAN
1
8
1.41
1_555
1_554
1
A
A
H1
O5
BDP
CEG
6
10
1.43
1_555
3_556
1
A
A
H1
O5
BDP
CEG
2
12
1.43
1_555
3_545
1
A
A
H1
C1
BDP
CEG
6
10
1.43
1_555
3_556
1
A
A
H1
C1
BDP
CEG
2
12
1.43
1_555
3_545
1
A
A
C3
C3
MAN
MAN
4
8
1.44
1_555
3_556
1
A
A
C4
O3
BDP
MAN
2
11
1.44
1_555
3_545
1
A
A
C4
O3
BDP
MAN
6
9
1.44
1_555
3_556
1
A
A
H3
C4
BDP
MAN
2
11
1.44
1_555
3_545
1
A
A
H3
C4
BDP
MAN
6
9
1.44
1_555
3_556
1
A
A
C1
H1
GAL
MAN
5
8
1.45
1_555
3_556
1
A
A
C1
H1
GAL
MAN
1
4
1.45
1_555
3_545
1
A
A
H62
C7
MAN
CEG
8
12
1.48
1_555
3_546
1
A
A
H62
C7
MAN
CEG
4
10
1.48
1_555
3_556
1
A
A
C2
C2
BDP
MAN
2
11
1.49
1_555
3_545
1
A
A
C2
C2
BDP
MAN
6
9
1.49
1_555
3_556
1
A
A
H1
C4
BGC
MAN
7
9
1.50
1_555
3_556
1
A
A
H1
C4
BGC
MAN
3
11
1.50
1_555
3_545
1
A
A
C4
H4
GAL
BGC
1
3
1.50
1_555
3_545
1
A
A
C4
H4
GAL
BGC
5
7
1.50
1_555
3_556
1
A
A
C2
H2
BDP
MAN
6
9
1.51
1_555
3_556
1
A
A
C2
H2
BDP
MAN
2
11
1.51
1_555
3_545
1
A
A
O3
H3
BDP
MAN
6
9
1.51
1_555
3_556
1
A
A
O3
H3
BDP
MAN
2
11
1.51
1_555
3_545
1
A
A
C2
H2
MAN
MAN
4
8
1.51
1_555
3_556
1
A
A
H2
C2
MAN
MAN
4
8
1.51
1_555
3_556
1
A
A
C1
O5
GAL
MAN
5
8
1.54
1_555
3_556
1
A
A
C1
O5
GAL
MAN
1
4
1.54
1_555
3_545
1
A
A
H2
O2
GAL
BGC
1
3
1.54
1_555
3_545
1
A
A
H2
O2
GAL
BGC
5
7
1.54
1_555
3_556
1
A
A
C5
H1
GAL
MAN
5
8
1.55
1_555
3_556
1
A
A
C5
H1
GAL
MAN
1
4
1.55
1_555
3_545
1
A
A
C6
C9
MAN
CEG
8
12
1.55
1_555
3_546
1
A
A
C6
C9
MAN
CEG
4
10
1.55
1_555
3_556
1
A
A
C4
O3
MAN
MAN
4
8
1.56
1_555
3_556
1
A
A
O3
C4
MAN
MAN
4
8
1.56
1_555
3_556
1
A
A
C3
C3
GAL
BGC
5
7
1.57
1_555
3_556
1
A
A
C3
C3
GAL
BGC
1
3
1.57
1_555
3_545
1
A
A
O3
O2
BGC
MAN
3
8
1.58
1_555
3_556
1
A
A
O2
O3
MAN
BGC
4
7
1.58
1_555
3_556
1
A
A
O3
O4
BDP
MAN
2
11
1.59
1_555
3_545
1
A
A
O3
O4
BDP
MAN
6
9
1.59
1_555
3_556
1
A
A
O2
H3
BDP
MAN
2
11
1.60
1_555
3_545
1
A
A
O2
H3
BDP
MAN
6
9
1.60
1_555
3_556
1
A
A
C2
C2
GAL
BGC
1
3
1.61
1_555
3_545
1
A
A
C2
C2
GAL
BGC
5
7
1.61
1_555
3_556
1
A
A
O4
O4
GAL
BGC
5
7
1.61
1_555
3_556
1
A
A
O4
O4
GAL
BGC
1
3
1.61
1_555
3_545
1
A
A
O6
O6
MAN
CEG
4
10
1.62
1_555
3_556
1
A
A
O6
O6
MAN
CEG
8
12
1.62
1_555
3_546
1
A
A
C2
O3
BDP
MAN
6
9
1.65
1_555
3_556
1
A
A
C2
O3
BDP
MAN
2
11
1.65
1_555
3_545
1
A
A
O2
O4
BDP
BDP
2
2
1.65
1_555
3_545
1
A
A
O2
O4
BDP
BDP
6
6
1.65
1_555
3_556
1
A
A
C2
C3
MAN
MAN
4
8
1.73
1_555
3_556
1
A
A
C3
C2
MAN
MAN
4
8
1.73
1_555
3_556
1
A
A
C3
O2
MAN
MAN
4
8
1.75
1_555
3_556
1
A
A
O2
C3
MAN
MAN
4
8
1.75
1_555
3_556
1
A
A
C3
O3
GAL
BGC
5
7
1.75
1_555
3_556
1
A
A
C3
O3
GAL
BGC
1
3
1.75
1_555
3_545
1
A
A
O3
C4
GAL
BGC
5
7
1.76
1_555
3_556
1
A
A
O3
C4
GAL
BGC
1
3
1.76
1_555
3_545
1
A
A
O2
O3
GAL
BGC
5
7
1.77
1_555
3_556
1
A
A
O2
O3
GAL
BGC
1
3
1.77
1_555
3_545
1
A
A
C5
O3
BDP
MAN
2
11
1.77
1_555
3_545
1
A
A
C5
O3
BDP
MAN
6
9
1.77
1_555
3_556
1
A
A
C1
C2
BDP
MAN
2
11
1.77
1_555
3_545
1
A
A
C1
C2
BDP
MAN
6
9
1.77
1_555
3_556
1
A
A
O8B
O8B
CEG
CEG
10
12
1.80
1_555
3_536
1
A
A
C2
C1
MAN
MAN
4
8
1.81
1_555
3_556
1
A
A
C1
C2
MAN
MAN
4
8
1.81
1_555
3_556
1
A
A
C1
C3
GAL
BGC
1
3
1.81
1_555
3_545
1
A
A
C1
C3
GAL
BGC
5
7
1.81
1_555
3_556
1
A
A
C5
O6
GAL
GAL
1
5
1.86
1_555
3_545
1
A
A
O6
C5
GAL
GAL
1
5
1.86
1_555
3_545
1
A
A
C1
C4
BGC
MAN
7
9
1.86
1_555
3_556
1
A
A
C1
C4
BGC
MAN
3
11
1.86
1_555
3_545
1
A
A
O5
O3
GAL
BGC
1
3
1.94
1_555
3_545
1
A
A
O5
O3
GAL
BGC
5
7
1.94
1_555
3_556
1
A
A
O3
C3
BDP
MAN
6
9
1.94
1_555
3_556
1
A
A
O3
C3
BDP
MAN
2
11
1.94
1_555
3_545
1
A
A
C1
O3
BDP
MAN
2
11
1.94
1_555
3_545
1
A
A
C1
O3
BDP
MAN
6
9
1.94
1_555
3_556
1
A
A
C4
C3
GAL
BGC
1
3
1.94
1_555
3_545
1
A
A
C4
C3
GAL
BGC
5
7
1.94
1_555
3_556
1
A
A
O4
C9
MAN
CEG
4
10
1.95
1_555
3_556
1
A
A
O4
C9
MAN
CEG
8
12
1.95
1_555
3_546
1
A
A
C3
C4
BDP
MAN
2
11
1.96
1_555
3_545
1
A
A
C3
C4
BDP
MAN
6
9
1.96
1_555
3_556
1
A
A
C6
C6
GAL
GAL
1
5
1.99
1_555
3_545
1
A
A
C6
O4
GAL
BGC
1
3
2.00
1_555
3_545
1
A
A
C6
O4
GAL
BGC
5
7
2.00
1_555
3_556
1
A
A
O4
O3
MAN
MAN
4
8
2.01
1_555
3_556
1
A
A
O3
O4
MAN
MAN
4
8
2.01
1_555
3_556
1
A
A
C1
C2
GAL
MAN
5
8
2.04
1_555
3_556
1
A
A
C1
C2
GAL
MAN
1
4
2.04
1_555
3_545
1
A
A
O5
C3
GAL
BGC
1
3
2.04
1_555
3_545
1
A
A
O5
C3
GAL
BGC
5
7
2.04
1_555
3_556
1
A
A
C4
C5
GAL
BGC
1
3
2.06
1_555
3_545
1
A
A
C4
C5
GAL
BGC
5
7
2.06
1_555
3_556
1
A
A
O3
C4
BDP
MAN
2
11
2.08
1_555
3_545
1
A
A
O3
C4
BDP
MAN
6
9
2.08
1_555
3_556
1
A
A
O4
C3
GAL
BGC
5
7
2.08
1_555
3_556
1
A
A
O4
C3
GAL
BGC
1
3
2.08
1_555
3_545
1
A
A
O2
O5
BDP
MAN
2
11
2.08
1_555
3_545
1
A
A
O2
O5
BDP
MAN
6
9
2.08
1_555
3_556
1
A
A
O6
C3
BGC
CEG
3
10
2.08
1_555
2_454
1
A
A
O6
C3
BGC
CEG
7
12
2.08
1_555
2_555
1
A
A
C2
O4
BGC
MAN
7
9
2.09
1_555
3_556
1
A
A
C2
O4
BGC
MAN
3
11
2.09
1_555
3_545
1
A
A
C3
O4
GAL
BGC
5
7
2.10
1_555
3_556
1
A
A
C3
O4
GAL
BGC
1
3
2.10
1_555
3_545
1
A
A
C5
O4
BGC
MAN
7
9
2.12
1_555
3_556
1
A
A
C5
O4
BGC
MAN
3
11
2.12
1_555
3_545
1
A
A
O5
O5
GAL
MAN
5
8
2.12
1_555
3_556
1
A
A
O5
O5
GAL
MAN
1
4
2.12
1_555
3_545
1
A
A
C2
C4
GAL
BGC
1
3
2.12
1_555
3_545
1
A
A
C2
C4
GAL
BGC
5
7
2.12
1_555
3_556
1
A
A
O2
C2
GAL
BGC
1
3
2.13
1_555
3_545
1
A
A
O2
C2
GAL
BGC
5
7
2.13
1_555
3_556
1
A
A
C4
C9
MAN
CEG
4
10
2.13
1_555
3_556
1
A
A
C4
C9
MAN
CEG
8
12
2.13
1_555
3_546
1
A
A
C5
C9
MAN
CEG
8
12
2.14
1_555
3_546
1
A
A
C5
C9
MAN
CEG
4
10
2.14
1_555
3_556
1
A
A
C6
O6
MAN
CEG
4
10
2.14
1_555
3_556
1
A
A
C6
O6
MAN
CEG
8
12
2.14
1_555
3_546
1
A
A
C1
C3
BDP
MAN
2
11
2.16
1_555
3_545
1
A
A
C1
C3
BDP
MAN
6
9
2.16
1_555
3_556
1
A
A
C2
C1
GAL
MAN
5
8
2.16
1_555
3_556
1
A
A
C2
C1
GAL
MAN
1
4
2.16
1_555
3_545
1
A
A
O5
O6
GAL
GAL
1
5
2.18
1_555
3_545
1
A
A
O6
O5
GAL
GAL
1
5
2.18
1_555
3_545
1
A
A
C1
O2
BDP
MAN
2
11
2.19
1_555
3_545
1
A
A
C1
O2
BDP
MAN
6
9
2.19
1_555
3_556
1
A
A
O5
O3
BDP
MAN
2
11
2.19
1_555
3_545
1
A
A
O5
O3
BDP
MAN
6
9
2.19
1_555
3_556
THE SPACE GROUP USED IN THE ANALYSIS OF THIS STRUCTURE IS
P 21 21 21 IN A NON-STANDARD SETTING. THE EQUIPOINTS FOR
THIS GROUP IN THE SETTING USED ARE-
X,Y,Z
-X,-Y,1/2+Z
-X,1/2+Y,1/2-Z
1/2+X,1/2-Y,-Z
3.0
1
3.0
0
144
144
0
0
refinement
LINKED-ATOM
LEAST-SQUARES MODEL-BUILDING PROCEDURE
refinement
LALS
CONFORMATION AND MOLECULAR ORGANIZATION IN FIBERS OF THE CAPSULAR POLYSACCHARIDE FROM ESCHERICHIA COLI M41 MUTANT
1
N
N
A 21 SCREW AXIS PARALLEL TO Z PASSES THROUGH X=0,Y=0 AND
THE 21 AXIS PARALLEL TO X IS IN THE Z=0 PLANE. THE SCREW
AXIS PARALLEL TO Z WAS USED TO GENERATE THE TWELVE-RESIDUE
SEGMENT FROM THE PUBLISHED COORDINATES FOR THE SIX-RESIDUE
ASYMMETRIC UNIT.
covale
1.389
both
A
GAL
1
A
O3
GAL
1_555
A
BDP
2
A
C1
BDP
1_555
covale
1.390
both
A
BDP
2
A
O3
BDP
1_555
A
BGC
3
A
C1
BGC
1_555
covale
1.428
both
A
BDP
2
A
O4
BDP
1_555
A
MAN
11
A
C1
MAN
1_555
covale
1.416
both
A
BGC
3
A
O3
BGC
1_555
A
MAN
4
A
C1
MAN
1_555
covale
1.414
both
A
MAN
4
A
O2
MAN
1_555
A
GAL
5
A
C1
GAL
1_555
covale
1.389
both
A
GAL
5
A
O3
GAL
1_555
A
BDP
6
A
C1
BDP
1_555
covale
1.390
both
A
BDP
6
A
O3
BDP
1_555
A
BGC
7
A
C1
BGC
1_555
covale
1.428
both
A
BDP
6
A
O4
BDP
1_555
A
MAN
9
A
C1
MAN
1_555
covale
1.416
both
A
BGC
7
A
O3
BGC
1_555
A
MAN
8
A
C1
MAN
1_555
covale
1.388
both
A
MAN
9
A
O2
MAN
1_555
A
CEG
10
A
C1
CEG
1_555
covale
1.388
both
A
MAN
11
A
O2
MAN
1_555
A
CEG
12
A
C1
CEG
1_555
BACTERIAL ENCAPSULATION
BACTERIAL ENCAPSULATION
19
P 21 21 21