1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Clore, G.M. Gronenborn, A.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 28 7241 7257 10.1021/bi00444a016 2554967 Determination of the three-dimensional solution structure of the C-terminal domain of cellobiohydrolase I from Trichoderma reesei. A study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing. 1989 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3746.126 C-TERMINAL DOMAIN OF CELLOBIOHYDROLASE I 3.2.1.91 1 man polymer no no TQSHYGQCGGIGYSGPTVCASGTTCQVLNPYYSQCL TQSHYGQCGGIGYSGPTVCASGTTCQVLNPYYSQCL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Hypocrea sample 51453 Hypocrea jecorina pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_conf repository Initial release Version format compliance Version format compliance Derived calculations Other 1 0 1990-01-15 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 _pdbx_database_status.process_site Y BNL 1989-05-30 REL 1 REFINEMENT. THE METHOD USED TO DETERMINE AND REFINE THE STRUCTURE IS THE HYBRID METRIC MATRIX DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING METHOD (M.NILGES, G.M.CLORE, A.M. GRONENBORN, FEBS LETT. 229, 317-324 (1988)) USING THE PROGRAM XPLOR (A.T. BRUENGER, YALE UNIVERSITY, CT 06511). STRUCTURAL STATISTICS RMS DEVIATION FROM EXPERIMENTAL RESTRAINTS *(1)* RESTRAINT TYPE NUMBER OF RESTRAINTS RMS (ANGSTROMS) ALL 578 0.024 INTERRESIDUE SHORT RANGE 206 0.030 INTERRESIDUE LONG RANGE 137 0.017 INTRARESIDUE 211 0.021 HBOND *(2)* 24 0.019 POTENTIAL ENERGY TERMS TYPE ENERGY (KCAL/MOL) F(NOE) *(3)* 17 F(TOR) *(4)* 0 F(REPEL) *(5)* 34 LENNARD-JONES VAN DER WAALS ENERGY (E(L-J)) CALCULATED USING THE *CHARMM* EMPIRICAL ENERGY FUNCTION IS -118 KCAL/MOL. DEVIATIONS FROM IDEALIZED GEOMETRY *(6)* TYPE TOTAL NUMBER RMS DEVIATION BONDS 503 0.010 (ANGSTROMS) ANGLES 896 2.170 (DEGREES) IMPROPERS 227 0.911 (DEGREES) NOTES. *(1)* THE RMS DEVIATION FROM THE EXPERIMENTAL RESTRAINTS ARE CALCULATED WITH RESPECT TO THE UPPER AND LOWER LIMITS OF THE DISTANCE RESTRAINTS. NONE OF THE STRUCTURES EXHIBITED VIOLATIONS GREATER THAN 0.5 ANGSTROMS. *(2)* FOR EACH BACKBONE HYDROGEN BOND THERE ARE TWO RESTRAINTS - R(NH-O) .LT. 2.3 ANGSTROMS AND R(N-O) .LT. 3.3 ANGSTROMS. THE LOWER LIMITS ARE GIVEN BY THE SUM OF THE VAN DER WAALS RADII OF THE RELEVANT ATOMS. *(3)* THE VALUES OF THE SQUARE-WELL NOE POTENTIAL F(NOE) ARE CALCULATED WITH A FORCE CONSTANT OF 50 KCAL/MOL/ANGSTROM**2. *(4)* THE VALUES OF F(PHI) ARE CALCULATED WITH A FORCE CONSTANT OF 200 KCAL/MOL/RAD**2. F(PHI) IS A SQUARE-WELL DIHEDRAL POTENTIAL WHICH IS USED TO RESTRICT THE RANGES OF 33 PHI ,24 PSI AND 25 CHI1 TORSION ANGLES. *(5)* THE VALUE OF THE VAN DER WAALS REPULSION TERM F(REPEL) IS CALCULATED WITH A FORCE CONSTANT OF 4 KCAL/MOL/ANGSTROM**4 WITH THE HARD SPHERE VAN DER WAALS RADII SET TO 0.8 TIMES THE STANDARD VALUES USED IN THE *CHARMM* EMPIRICAL ENERGY FUNCTION. *(6)* THE IMPROPER TERMS SERVE TO MAINTAIN PLANARITY AND APPROPRIATE CHIRALITY. THEY ALSO MAINTAIN THE PEPTIDE BONDS OF ALL RESIDUES (WITH THE EXCEPTION OF PROLINES) IN THE TRANS CONFORMATION. IN THE DYNAMICAL SIMULATED ANNEALING CALCULATIONS, THE RESTRAINTS FOR THE DISULFIDE BRIDGES ARE INCLUDED IN THE BOND AND ANGLE TERMS. A TOTAL OF 41 STRUCTURES CONSISTENT WITH THE NMR DATA WERE CALCULATED. THIS ENTRY REPRESENTS THE COORDINATES OBTAINED BY AVERAGING THE COORDINATES OF THE INDIVIDUAL STRUCTURES AND SUBJECTING THE RESULTING COORDINATES TO FURTHER RESTRAINED MINIMIZATION. THE COORDINATES OF THE 41 STRUCTURES ARE GIVEN IN THE PROTEIN DATA BANK ENTRY *2CBH*. THE THERMAL PARAMETERS GIVEN IN THIS ENTRY REPRESENT THE ATOMIC RMS DEVIATION OF THE INDIVIDUAL STRUCTURES ABOUT THE MEAN COORDINATE POSITIONS. ALL THE INTERPROTON DISTANCE AND TORSION ANGLE RESTRAINTS ARE AVAILABLE IN THE RESTRAINT FILE. BRUNGER refinement XPLOR THR 1 n 1 THR 1 A GLN 2 n 2 GLN 2 A SER 3 n 3 SER 3 A HIS 4 n 4 HIS 4 A TYR 5 n 5 TYR 5 A GLY 6 n 6 GLY 6 A GLN 7 n 7 GLN 7 A CYS 8 n 8 CYS 8 A GLY 9 n 9 GLY 9 A GLY 10 n 10 GLY 10 A ILE 11 n 11 ILE 11 A GLY 12 n 12 GLY 12 A TYR 13 n 13 TYR 13 A SER 14 n 14 SER 14 A GLY 15 n 15 GLY 15 A PRO 16 n 16 PRO 16 A THR 17 n 17 THR 17 A VAL 18 n 18 VAL 18 A CYS 19 n 19 CYS 19 A ALA 20 n 20 ALA 20 A SER 21 n 21 SER 21 A GLY 22 n 22 GLY 22 A THR 23 n 23 THR 23 A THR 24 n 24 THR 24 A CYS 25 n 25 CYS 25 A GLN 26 n 26 GLN 26 A VAL 27 n 27 VAL 27 A LEU 28 n 28 LEU 28 A ASN 29 n 29 ASN 29 A PRO 30 n 30 PRO 30 A TYR 31 n 31 TYR 31 A TYR 32 n 32 TYR 32 A SER 33 n 33 SER 33 A GLN 34 n 34 GLN 34 A CYS 35 n 35 CYS 35 A LEU 36 n 36 LEU 36 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A CG ND1 HIS HIS 4 4 -0.113 0.015 1.369 1.256 N 1 A ILE 11 -48.73 150.14 1 A PRO 30 -68.52 25.03 1 A TYR 31 -152.30 11.86 1 A TYR 32 -170.39 130.84 model building X-PLOR refinement X-PLOR phasing X-PLOR C-TERMINAL DOMAIN OF CELLOBIOHYDROLASE I (CT-CBH I) (E.C.3.2.1.91) (NMR, MINIMIZED MEAN STRUCTURE) DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE C-TERMINAL DOMAIN OF CELLOBIOHYDROLASE I FROM TRICHODERMA REESEI. A STUDY USING NUCLEAR MAGNETIC RESONANCE AND HYBRID DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING 1 Y N disulf 2.024 A CYS 8 A SG CYS 8 1_555 A CYS 25 A SG CYS 25 1_555 disulf 2.021 A CYS 19 A SG CYS 19 1_555 A CYS 35 A SG CYS 35 1_555 HYDROLASE (O-GLYCOSYL) HYDROLASE (O-GLYCOSYL) GUX1_TRIRE UNP 1 1 P62694 MYRKLAVISAFLATARAQSACTLQSETHPPLTWQKCSSGGTCTQQTGSVVIDANWRWTHATNSSTNCYDGNTWSSTLCPD NETCAKNCCLDGAAYASTYGVTTSGNSLSIGFVTQSAQKNVGARLYLMASDTTYQEFTLLGNEFSFDVDVSQLPCGLNGA LYFVSMDADGGVSKYPTNTAGAKYGTGYCDSQCPRDLKFINGQANVEGWEPSSNNANTGIGGHGSCCSEMDIWEANSISE ALTPHPCTTVGQEICEGDGCGGTYSDNRYGGTCDPDGCDWNPYRLGNTSFYGPGSSFTLDTTKKLTVVTQFETSGAINRY YVQNGVTFQQPNAELGSYSGNELNDDYCTAEEAEFGGSSFSDKGGLTQFKKATSGGMVLVMSLWDDYYANMLWLDSTYPT NETSSTPGAVRGSCSTSSGVPAQVESQSPNAKVTFSNIKFGPIGSTGNPSGGNPPGGNRGTTTTRRPATTTGSSPGPTQS HYGQCGGIGYSGPTVCASGTTCQVLNPYYSQCL 478 513 1CBH 1 36 P62694 A 1 1 36 3 anti-parallel anti-parallel A TYR 5 A TYR 5 A GLY 9 A GLY 9 A THR 24 A THR 24 A LEU 28 A LEU 28 A SER 33 A SER 33 A LEU 36 A LEU 36 1 P 1