1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Clore, G.M.
Gronenborn, A.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
28
7241
7257
10.1021/bi00444a016
2554967
Determination of the three-dimensional solution structure of the C-terminal domain of cellobiohydrolase I from Trichoderma reesei. A study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing.
1989
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3746.126
C-TERMINAL DOMAIN OF CELLOBIOHYDROLASE I
3.2.1.91
1
man
polymer
no
no
TQSHYGQCGGIGYSGPTVCASGTTCQVLNPYYSQCL
TQSHYGQCGGIGYSGPTVCASGTTCQVLNPYYSQCL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Hypocrea
sample
51453
Hypocrea jecorina
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conf
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
1
0
1990-01-15
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
_pdbx_database_status.process_site
Y
BNL
1989-05-30
REL
1
REFINEMENT. THE METHOD USED TO DETERMINE AND REFINE THE
STRUCTURE IS THE HYBRID METRIC MATRIX DISTANCE
GEOMETRY-DYNAMICAL SIMULATED ANNEALING METHOD
(M.NILGES, G.M.CLORE, A.M. GRONENBORN, FEBS LETT. 229,
317-324 (1988)) USING THE PROGRAM XPLOR (A.T. BRUENGER,
YALE UNIVERSITY, CT 06511).
STRUCTURAL STATISTICS
RMS DEVIATION FROM EXPERIMENTAL RESTRAINTS *(1)*
RESTRAINT TYPE NUMBER OF RESTRAINTS RMS (ANGSTROMS)
ALL 578 0.024
INTERRESIDUE
SHORT RANGE 206 0.030
INTERRESIDUE
LONG RANGE 137 0.017
INTRARESIDUE 211 0.021
HBOND *(2)* 24 0.019
POTENTIAL ENERGY TERMS
TYPE ENERGY (KCAL/MOL)
F(NOE) *(3)* 17
F(TOR) *(4)* 0
F(REPEL) *(5)* 34
LENNARD-JONES VAN DER WAALS ENERGY (E(L-J)) CALCULATED
USING THE *CHARMM* EMPIRICAL ENERGY FUNCTION IS
-118 KCAL/MOL.
DEVIATIONS FROM IDEALIZED GEOMETRY *(6)*
TYPE TOTAL NUMBER RMS DEVIATION
BONDS 503 0.010 (ANGSTROMS)
ANGLES 896 2.170 (DEGREES)
IMPROPERS 227 0.911 (DEGREES)
NOTES.
*(1)* THE RMS DEVIATION FROM THE EXPERIMENTAL RESTRAINTS
ARE CALCULATED WITH RESPECT TO THE UPPER AND
LOWER LIMITS OF THE DISTANCE RESTRAINTS. NONE OF
THE STRUCTURES EXHIBITED VIOLATIONS GREATER THAN
0.5 ANGSTROMS.
*(2)* FOR EACH BACKBONE HYDROGEN BOND THERE ARE TWO
RESTRAINTS - R(NH-O) .LT. 2.3 ANGSTROMS AND
R(N-O) .LT. 3.3 ANGSTROMS. THE LOWER LIMITS
ARE GIVEN BY THE SUM OF THE VAN DER WAALS RADII
OF THE RELEVANT ATOMS.
*(3)* THE VALUES OF THE SQUARE-WELL NOE POTENTIAL
F(NOE) ARE CALCULATED WITH A FORCE CONSTANT OF
50 KCAL/MOL/ANGSTROM**2.
*(4)* THE VALUES OF F(PHI) ARE CALCULATED WITH A FORCE
CONSTANT OF 200 KCAL/MOL/RAD**2. F(PHI) IS A
SQUARE-WELL DIHEDRAL POTENTIAL WHICH IS USED TO
RESTRICT THE RANGES OF 33 PHI ,24 PSI AND 25 CHI1
TORSION ANGLES.
*(5)* THE VALUE OF THE VAN DER WAALS REPULSION TERM
F(REPEL) IS CALCULATED WITH A FORCE CONSTANT OF
4 KCAL/MOL/ANGSTROM**4 WITH THE HARD SPHERE
VAN DER WAALS RADII SET TO 0.8 TIMES THE STANDARD
VALUES USED IN THE *CHARMM* EMPIRICAL ENERGY
FUNCTION.
*(6)* THE IMPROPER TERMS SERVE TO MAINTAIN PLANARITY
AND APPROPRIATE CHIRALITY. THEY ALSO MAINTAIN THE
PEPTIDE BONDS OF ALL RESIDUES (WITH THE EXCEPTION
OF PROLINES) IN THE TRANS CONFORMATION. IN THE
DYNAMICAL SIMULATED ANNEALING CALCULATIONS, THE
RESTRAINTS FOR THE DISULFIDE BRIDGES ARE INCLUDED
IN THE BOND AND ANGLE TERMS.
A TOTAL OF 41 STRUCTURES CONSISTENT WITH THE NMR DATA
WERE CALCULATED. THIS ENTRY REPRESENTS THE COORDINATES
OBTAINED BY AVERAGING THE COORDINATES OF THE INDIVIDUAL
STRUCTURES AND SUBJECTING THE RESULTING COORDINATES TO
FURTHER RESTRAINED MINIMIZATION. THE COORDINATES OF THE
41 STRUCTURES ARE GIVEN IN THE PROTEIN DATA BANK ENTRY
*2CBH*.
THE THERMAL PARAMETERS GIVEN IN THIS ENTRY REPRESENT THE
ATOMIC RMS DEVIATION OF THE INDIVIDUAL STRUCTURES ABOUT
THE MEAN COORDINATE POSITIONS.
ALL THE INTERPROTON DISTANCE AND TORSION ANGLE RESTRAINTS
ARE AVAILABLE IN THE RESTRAINT FILE.
BRUNGER
refinement
XPLOR
THR
1
n
1
THR
1
A
GLN
2
n
2
GLN
2
A
SER
3
n
3
SER
3
A
HIS
4
n
4
HIS
4
A
TYR
5
n
5
TYR
5
A
GLY
6
n
6
GLY
6
A
GLN
7
n
7
GLN
7
A
CYS
8
n
8
CYS
8
A
GLY
9
n
9
GLY
9
A
GLY
10
n
10
GLY
10
A
ILE
11
n
11
ILE
11
A
GLY
12
n
12
GLY
12
A
TYR
13
n
13
TYR
13
A
SER
14
n
14
SER
14
A
GLY
15
n
15
GLY
15
A
PRO
16
n
16
PRO
16
A
THR
17
n
17
THR
17
A
VAL
18
n
18
VAL
18
A
CYS
19
n
19
CYS
19
A
ALA
20
n
20
ALA
20
A
SER
21
n
21
SER
21
A
GLY
22
n
22
GLY
22
A
THR
23
n
23
THR
23
A
THR
24
n
24
THR
24
A
CYS
25
n
25
CYS
25
A
GLN
26
n
26
GLN
26
A
VAL
27
n
27
VAL
27
A
LEU
28
n
28
LEU
28
A
ASN
29
n
29
ASN
29
A
PRO
30
n
30
PRO
30
A
TYR
31
n
31
TYR
31
A
TYR
32
n
32
TYR
32
A
SER
33
n
33
SER
33
A
GLN
34
n
34
GLN
34
A
CYS
35
n
35
CYS
35
A
LEU
36
n
36
LEU
36
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
CG
ND1
HIS
HIS
4
4
-0.113
0.015
1.369
1.256
N
1
A
ILE
11
-48.73
150.14
1
A
PRO
30
-68.52
25.03
1
A
TYR
31
-152.30
11.86
1
A
TYR
32
-170.39
130.84
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
C-TERMINAL DOMAIN OF CELLOBIOHYDROLASE I (CT-CBH I) (E.C.3.2.1.91) (NMR, MINIMIZED MEAN STRUCTURE)
DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE C-TERMINAL DOMAIN OF CELLOBIOHYDROLASE I FROM TRICHODERMA REESEI. A STUDY USING NUCLEAR MAGNETIC RESONANCE AND HYBRID DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING
1
Y
N
disulf
2.024
A
CYS
8
A
SG
CYS
8
1_555
A
CYS
25
A
SG
CYS
25
1_555
disulf
2.021
A
CYS
19
A
SG
CYS
19
1_555
A
CYS
35
A
SG
CYS
35
1_555
HYDROLASE (O-GLYCOSYL)
HYDROLASE (O-GLYCOSYL)
GUX1_TRIRE
UNP
1
1
P62694
MYRKLAVISAFLATARAQSACTLQSETHPPLTWQKCSSGGTCTQQTGSVVIDANWRWTHATNSSTNCYDGNTWSSTLCPD
NETCAKNCCLDGAAYASTYGVTTSGNSLSIGFVTQSAQKNVGARLYLMASDTTYQEFTLLGNEFSFDVDVSQLPCGLNGA
LYFVSMDADGGVSKYPTNTAGAKYGTGYCDSQCPRDLKFINGQANVEGWEPSSNNANTGIGGHGSCCSEMDIWEANSISE
ALTPHPCTTVGQEICEGDGCGGTYSDNRYGGTCDPDGCDWNPYRLGNTSFYGPGSSFTLDTTKKLTVVTQFETSGAINRY
YVQNGVTFQQPNAELGSYSGNELNDDYCTAEEAEFGGSSFSDKGGLTQFKKATSGGMVLVMSLWDDYYANMLWLDSTYPT
NETSSTPGAVRGSCSTSSGVPAQVESQSPNAKVTFSNIKFGPIGSTGNPSGGNPPGGNRGTTTTRRPATTTGSSPGPTQS
HYGQCGGIGYSGPTVCASGTTCQVLNPYYSQCL
478
513
1CBH
1
36
P62694
A
1
1
36
3
anti-parallel
anti-parallel
A
TYR
5
A
TYR
5
A
GLY
9
A
GLY
9
A
THR
24
A
THR
24
A
LEU
28
A
LEU
28
A
SER
33
A
SER
33
A
LEU
36
A
LEU
36
1
P 1