0.015748 0.000000 0.001461 0.000000 0.010081 0.000000 0.000000 0.000000 0.027440 0.00000 0.00000 0.00000 Herron, J.N. He, X.M. Ballard, D.W. Blier, P.R. Pace, P.E. Bothwell, A.L.M. Voss Junior, E.W. Edmundson, A.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 95.30 90.00 63.500 99.200 36.600 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proteins PSFGEY 0867 0887-3585 11 159 175 10.1002/prot.340110302 1749770 An autoantibody to single-stranded DNA: comparison of the three-dimensional structures of the unliganded Fab and a deoxynucleotide-Fab complex. 1991 UK Mol.Immunol. MOIMD5 0921 0161-5890 22 499 Crystallographic Characterization of the FAB Fragment of a Monoclonal Anti-SS- DNA Antibody 1985 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M x-ray 1 1.0 867.621 DNA (5'-D(*TP*TP*T)-3') 1 syn polymer 24109.773 PROTEIN (FAB (BV04-01) AUTOANTIBODY-LIGHT CHAIN) 1 man polymer 23553.316 PROTEIN (FAB (BV04-01) AUTOANTIBODY-HEAVY CHAIN) 1 man polymer no no (DT)(DT)(DT) TTT D polydeoxyribonucleotide no no DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYFCSQSTHVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYFCSQSTHVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC L polypeptide(L) no no EVQPVETGGGLVQPKGSLKLSCAASGFSFNTNAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSVKDRFTISRDDSQNM LYLQMNNLKTEDTAMYYCVRDQTGTAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTV TWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLE EVQPVETGGGLVQPKGSLKLSCAASGFSFNTNAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSVKDRFTISRDDSQNM LYLQMNNLKTEDTAMYYCVRDQTGTAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTV TWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLE H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse sample 10090 Mus musculus house mouse sample 10090 Mus musculus 2.36 47.97 struct_conf struct_conf_type repository Initial release Version format compliance Version format compliance Source and taxonomy Derived calculations 1 0 1994-01-31 1 1 2008-05-22 1 2 2011-07-13 1 3 2014-02-05 1 4 2017-11-29 Y NDB 1993-03-16 REL TURNS L2, L4, AND L10 CONTAIN ONLY 3 RESIDUES. THE PROTEIN WAS SEQUENCED BY D. W. BALLARD, P. R. BLIER, P. E. PACE, AND A. L. M. BOTHWELL. SEE REFERENCE 1 ABOVE. T 1 n 1 DT 1 D T 2 n 2 DT 2 D T 3 n 3 DT 3 D ASP 1 n 1 ASP 1 L VAL 2 n 2 VAL 2 L VAL 3 n 3 VAL 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L THR 7 n 7 THR 7 L PRO 8 n 8 PRO 8 L LEU 9 n 9 LEU 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L PRO 12 n 12 PRO 12 L VAL 13 n 13 VAL 13 L SER 14 n 14 SER 14 L LEU 15 n 15 LEU 15 L GLY 16 n 16 GLY 16 L ASP 17 n 17 ASP 17 L GLN 18 n 18 GLN 18 L ALA 19 n 19 ALA 19 L SER 20 n 20 SER 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L SER 25 n 25 SER 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L SER 28 n 28 SER 28 L LEU 29 n 29 LEU 29 L VAL 30 n 30 VAL 30 L HIS 31 n 31 HIS 31 L SER 32 n 32 SER 32 L ASN 33 n 33 ASN 33 L GLY 34 n 34 GLY 34 L ASN 35 n 35 ASN 35 L THR 36 n 36 THR 36 L TYR 37 n 37 TYR 37 L LEU 38 n 38 LEU 38 L HIS 39 n 39 HIS 39 L TRP 40 n 40 TRP 40 L TYR 41 n 41 TYR 41 L LEU 42 n 42 LEU 42 L GLN 43 n 43 GLN 43 L LYS 44 n 44 LYS 44 L PRO 45 n 45 PRO 45 L GLY 46 n 46 GLY 46 L GLN 47 n 47 GLN 47 L SER 48 n 48 SER 48 L PRO 49 n 49 PRO 49 L LYS 50 n 50 LYS 50 L LEU 51 n 51 LEU 51 L LEU 52 n 52 LEU 52 L ILE 53 n 53 ILE 53 L TYR 54 n 54 TYR 54 L LYS 55 n 55 LYS 55 L VAL 56 n 56 VAL 56 L SER 57 n 57 SER 57 L ASN 58 n 58 ASN 58 L ARG 59 n 59 ARG 59 L PHE 60 n 60 PHE 60 L SER 61 n 61 SER 61 L GLY 62 n 62 GLY 62 L VAL 63 n 63 VAL 63 L PRO 64 n 64 PRO 64 L ASP 65 n 65 ASP 65 L ARG 66 n 66 ARG 66 L PHE 67 n 67 PHE 67 L SER 68 n 68 SER 68 L GLY 69 n 69 GLY 69 L SER 70 n 70 SER 70 L GLY 71 n 71 GLY 71 L SER 72 n 72 SER 72 L GLY 73 n 73 GLY 73 L THR 74 n 74 THR 74 L ASP 75 n 75 ASP 75 L PHE 76 n 76 PHE 76 L THR 77 n 77 THR 77 L LEU 78 n 78 LEU 78 L LYS 79 n 79 LYS 79 L ILE 80 n 80 ILE 80 L SER 81 n 81 SER 81 L ARG 82 n 82 ARG 82 L VAL 83 n 83 VAL 83 L GLU 84 n 84 GLU 84 L ALA 85 n 85 ALA 85 L GLU 86 n 86 GLU 86 L ASP 87 n 87 ASP 87 L LEU 88 n 88 LEU 88 L GLY 89 n 89 GLY 89 L VAL 90 n 90 VAL 90 L TYR 91 n 91 TYR 91 L PHE 92 n 92 PHE 92 L CYS 93 n 93 CYS 93 L SER 94 n 94 SER 94 L GLN 95 n 95 GLN 95 L SER 96 n 96 SER 96 L THR 97 n 97 THR 97 L HIS 98 n 98 HIS 98 L VAL 99 n 99 VAL 99 L PRO 100 n 100 PRO 100 L LEU 101 n 101 LEU 101 L THR 102 n 102 THR 102 L PHE 103 n 103 PHE 103 L GLY 104 n 104 GLY 104 L ALA 105 n 105 ALA 105 L GLY 106 n 106 GLY 106 L THR 107 n 107 THR 107 L LYS 108 n 108 LYS 108 L LEU 109 n 109 LEU 109 L GLU 110 n 110 GLU 110 L LEU 111 n 111 LEU 111 L LYS 112 n 112 LYS 112 L ARG 113 n 113 ARG 113 L ALA 114 n 114 ALA 114 L ASP 115 n 115 ASP 115 L ALA 116 n 116 ALA 116 L ALA 117 n 117 ALA 117 L PRO 118 n 118 PRO 118 L THR 119 n 119 THR 119 L VAL 120 n 120 VAL 120 L SER 121 n 121 SER 121 L ILE 122 n 122 ILE 122 L PHE 123 n 123 PHE 123 L PRO 124 n 124 PRO 124 L PRO 125 n 125 PRO 125 L SER 126 n 126 SER 126 L SER 127 n 127 SER 127 L GLU 128 n 128 GLU 128 L GLN 129 n 129 GLN 129 L LEU 130 n 130 LEU 130 L THR 131 n 131 THR 131 L SER 132 n 132 SER 132 L GLY 133 n 133 GLY 133 L GLY 134 n 134 GLY 134 L ALA 135 n 135 ALA 135 L SER 136 n 136 SER 136 L VAL 137 n 137 VAL 137 L VAL 138 n 138 VAL 138 L CYS 139 n 139 CYS 139 L PHE 140 n 140 PHE 140 L LEU 141 n 141 LEU 141 L ASN 142 n 142 ASN 142 L ASN 143 n 143 ASN 143 L PHE 144 n 144 PHE 144 L TYR 145 n 145 TYR 145 L PRO 146 n 146 PRO 146 L LYS 147 n 147 LYS 147 L ASP 148 n 148 ASP 148 L ILE 149 n 149 ILE 149 L ASN 150 n 150 ASN 150 L VAL 151 n 151 VAL 151 L LYS 152 n 152 LYS 152 L TRP 153 n 153 TRP 153 L LYS 154 n 154 LYS 154 L ILE 155 n 155 ILE 155 L ASP 156 n 156 ASP 156 L GLY 157 n 157 GLY 157 L SER 158 n 158 SER 158 L GLU 159 n 159 GLU 159 L ARG 160 n 160 ARG 160 L GLN 161 n 161 GLN 161 L ASN 162 n 162 ASN 162 L GLY 163 n 163 GLY 163 L VAL 164 n 164 VAL 164 L LEU 165 n 165 LEU 165 L ASN 166 n 166 ASN 166 L SER 167 n 167 SER 167 L TRP 168 n 168 TRP 168 L THR 169 n 169 THR 169 L ASP 170 n 170 ASP 170 L GLN 171 n 171 GLN 171 L ASP 172 n 172 ASP 172 L SER 173 n 173 SER 173 L LYS 174 n 174 LYS 174 L ASP 175 n 175 ASP 175 L SER 176 n 176 SER 176 L THR 177 n 177 THR 177 L TYR 178 n 178 TYR 178 L SER 179 n 179 SER 179 L MET 180 n 180 MET 180 L SER 181 n 181 SER 181 L SER 182 n 182 SER 182 L THR 183 n 183 THR 183 L LEU 184 n 184 LEU 184 L THR 185 n 185 THR 185 L LEU 186 n 186 LEU 186 L THR 187 n 187 THR 187 L LYS 188 n 188 LYS 188 L ASP 189 n 189 ASP 189 L GLU 190 n 190 GLU 190 L TYR 191 n 191 TYR 191 L GLU 192 n 192 GLU 192 L ARG 193 n 193 ARG 193 L HIS 194 n 194 HIS 194 L ASN 195 n 195 ASN 195 L SER 196 n 196 SER 196 L TYR 197 n 197 TYR 197 L THR 198 n 198 THR 198 L CYS 199 n 199 CYS 199 L GLU 200 n 200 GLU 200 L ALA 201 n 201 ALA 201 L THR 202 n 202 THR 202 L HIS 203 n 203 HIS 203 L LYS 204 n 204 LYS 204 L THR 205 n 205 THR 205 L SER 206 n 206 SER 206 L THR 207 n 207 THR 207 L SER 208 n 208 SER 208 L PRO 209 n 209 PRO 209 L ILE 210 n 210 ILE 210 L VAL 211 n 211 VAL 211 L LYS 212 n 212 LYS 212 L SER 213 n 213 SER 213 L PHE 214 n 214 PHE 214 L ASN 215 n 215 ASN 215 L ARG 216 n 216 ARG 216 L ASN 217 n 217 ASN 217 L GLU 218 n 218 GLU 218 L CYS 219 n 219 CYS 219 L GLU 1 n 1 GLU 1 H VAL 2 n 2 VAL 2 H GLN 3 n 3 GLN 3 H PRO 4 n 4 PRO 4 H VAL 5 n 5 VAL 5 H GLU 6 n 6 GLU 6 H THR 7 n 7 THR 7 H GLY 8 n 8 GLY 8 H GLY 9 n 9 GLY 9 H GLY 10 n 10 GLY 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H GLN 13 n 13 GLN 13 H PRO 14 n 14 PRO 14 H LYS 15 n 15 LYS 15 H GLY 16 n 16 GLY 16 H SER 17 n 17 SER 17 H LEU 18 n 18 LEU 18 H LYS 19 n 19 LYS 19 H LEU 20 n 20 LEU 20 H SER 21 n 21 SER 21 H CYS 22 n 22 CYS 22 H ALA 23 n 23 ALA 23 H ALA 24 n 24 ALA 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H PHE 27 n 27 PHE 27 H SER 28 n 28 SER 28 H PHE 29 n 29 PHE 29 H ASN 30 n 30 ASN 30 H THR 31 n 31 THR 31 H ASN 32 n 32 ASN 32 H ALA 33 n 33 ALA 33 H MET 34 n 34 MET 34 H ASN 35 n 35 ASN 35 H TRP 36 n 36 TRP 36 H VAL 37 n 37 VAL 37 H ARG 38 n 38 ARG 38 H GLN 39 n 39 GLN 39 H ALA 40 n 40 ALA 40 H PRO 41 n 41 PRO 41 H GLY 42 n 42 GLY 42 H LYS 43 n 43 LYS 43 H GLY 44 n 44 GLY 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TRP 47 n 47 TRP 47 H VAL 48 n 48 VAL 48 H ALA 49 n 49 ALA 49 H ARG 50 n 50 ARG 50 H ILE 51 n 51 ILE 51 H ARG 52 n 52 ARG 52 H SER 53 n 53 SER 53 H LYS 54 n 54 LYS 54 H SER 55 n 55 SER 55 H ASN 56 n 56 ASN 56 H ASN 57 n 57 ASN 57 H TYR 58 n 58 TYR 58 H ALA 59 n 59 ALA 59 H THR 60 n 60 THR 60 H TYR 61 n 61 TYR 61 H TYR 62 n 62 TYR 62 H ALA 63 n 63 ALA 63 H ASP 64 n 64 ASP 64 H SER 65 n 65 SER 65 H VAL 66 n 66 VAL 66 H LYS 67 n 67 LYS 67 H ASP 68 n 68 ASP 68 H ARG 69 n 69 ARG 69 H PHE 70 n 70 PHE 70 H THR 71 n 71 THR 71 H ILE 72 n 72 ILE 72 H SER 73 n 73 SER 73 H ARG 74 n 74 ARG 74 H ASP 75 n 75 ASP 75 H ASP 76 n 76 ASP 76 H SER 77 n 77 SER 77 H GLN 78 n 78 GLN 78 H ASN 79 n 79 ASN 79 H MET 80 n 80 MET 80 H LEU 81 n 81 LEU 81 H TYR 82 n 82 TYR 82 H LEU 83 n 83 LEU 83 H GLN 84 n 84 GLN 84 H MET 85 n 85 MET 85 H ASN 86 n 86 ASN 86 H ASN 87 n 87 ASN 87 H LEU 88 n 88 LEU 88 H LYS 89 n 89 LYS 89 H THR 90 n 90 THR 90 H GLU 91 n 91 GLU 91 H ASP 92 n 92 ASP 92 H THR 93 n 93 THR 93 H ALA 94 n 94 ALA 94 H MET 95 n 95 MET 95 H TYR 96 n 96 TYR 96 H TYR 97 n 97 TYR 97 H CYS 98 n 98 CYS 98 H VAL 99 n 99 VAL 99 H ARG 100 n 100 ARG 100 H ASP 101 n 101 ASP 101 H GLN 102 n 102 GLN 102 H THR 103 n 103 THR 103 H GLY 104 n 104 GLY 104 H THR 105 n 105 THR 105 H ALA 106 n 106 ALA 106 H TRP 107 n 107 TRP 107 H PHE 108 n 108 PHE 108 H ALA 109 n 109 ALA 109 H TYR 110 n 110 TYR 110 H TRP 111 n 111 TRP 111 H GLY 112 n 112 GLY 112 H GLN 113 n 113 GLN 113 H GLY 114 n 114 GLY 114 H THR 115 n 115 THR 115 H LEU 116 n 116 LEU 116 H VAL 117 n 117 VAL 117 H THR 118 n 118 THR 118 H VAL 119 n 119 VAL 119 H SER 120 n 120 SER 120 H ALA 121 n 121 ALA 121 H ALA 122 n 122 ALA 122 H LYS 123 n 123 LYS 123 H THR 124 n 124 THR 124 H THR 125 n 125 THR 125 H PRO 126 n 126 PRO 126 H PRO 127 n 127 PRO 127 H SER 128 n 128 SER 128 H VAL 129 n 129 VAL 129 H TYR 130 n 130 TYR 130 H PRO 131 n 131 PRO 131 H LEU 132 n 132 LEU 132 H ALA 133 n 133 ALA 133 H PRO 134 n 134 PRO 134 H GLY 135 n 135 GLY 135 H CYS 136 n 136 CYS 136 H GLY 137 n 137 GLY 137 H ASP 138 n 138 ASP 138 H THR 139 n 139 THR 139 H THR 140 n 140 THR 140 H GLY 141 n 141 GLY 141 H SER 142 n 142 SER 142 H SER 143 n 143 SER 143 H VAL 144 n 144 VAL 144 H THR 145 n 145 THR 145 H LEU 146 n 146 LEU 146 H GLY 147 n 147 GLY 147 H CYS 148 n 148 CYS 148 H LEU 149 n 149 LEU 149 H VAL 150 n 150 VAL 150 H LYS 151 n 151 LYS 151 H GLY 152 n 152 GLY 152 H TYR 153 n 153 TYR 153 H PHE 154 n 154 PHE 154 H PRO 155 n 155 PRO 155 H GLU 156 n 156 GLU 156 H SER 157 n 157 SER 157 H VAL 158 n 158 VAL 158 H THR 159 n 159 THR 159 H VAL 160 n 160 VAL 160 H THR 161 n 161 THR 161 H TRP 162 n 162 TRP 162 H ASN 163 n 163 ASN 163 H SER 164 n 164 SER 164 H GLY 165 n 165 GLY 165 H SER 166 n 166 SER 166 H LEU 167 n 167 LEU 167 H SER 168 n 168 SER 168 H SER 169 n 169 SER 169 H SER 170 n 170 SER 170 H VAL 171 n 171 VAL 171 H HIS 172 n 172 HIS 172 H THR 173 n 173 THR 173 H PHE 174 n 174 PHE 174 H PRO 175 n 175 PRO 175 H ALA 176 n 176 ALA 176 H LEU 177 n 177 LEU 177 H LEU 178 n 178 LEU 178 H GLN 179 n 179 GLN 179 H SER 180 n 180 SER 180 H GLY 181 n 181 GLY 181 H LEU 182 n 182 LEU 182 H TYR 183 n 183 TYR 183 H THR 184 n 184 THR 184 H MET 185 n 185 MET 185 H SER 186 n 186 SER 186 H SER 187 n 187 SER 187 H SER 188 n 188 SER 188 H VAL 189 n 189 VAL 189 H THR 190 n 190 THR 190 H VAL 191 n 191 VAL 191 H PRO 192 n 192 PRO 192 H SER 193 n 193 SER 193 H SER 194 n 194 SER 194 H THR 195 n 195 THR 195 H TRP 196 n 196 TRP 196 H PRO 197 n 197 PRO 197 H SER 198 n 198 SER 198 H GLN 199 n 199 GLN 199 H THR 200 n 200 THR 200 H VAL 201 n 201 VAL 201 H THR 202 n 202 THR 202 H CYS 203 n 203 CYS 203 H SER 204 n 204 SER 204 H VAL 205 n 205 VAL 205 H ALA 206 n 206 ALA 206 H HIS 207 n 207 HIS 207 H PRO 208 n 208 PRO 208 H ALA 209 n 209 ALA 209 H SER 210 n 210 SER 210 H SER 211 n 211 SER 211 H THR 212 n 212 THR 212 H THR 213 n 213 THR 213 H VAL 214 n 214 VAL 214 H ASP 215 n 215 ASP 215 H LYS 216 n 216 LYS 216 H LYS 217 n 217 LYS 217 H LEU 218 n 218 LEU 218 H GLU 219 n 219 GLU 219 H author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L N THR 5 B N THR 5 L O ARG 24 B O ARG 24 L N CYS 23 B N CYS 23 L O PHE 76 B O PHE 76 L N LYS 79 B N LYS 79 L O SER 68 B O SER 68 L N LEU 11 B N LEU 11 L O LYS 108 B O LYS 108 L O THR 102 B O THR 102 L N GLN 95 B N GLN 95 L N SER 94 B N SER 94 L O HIS 39 B O HIS 39 L N TRP 40 B N TRP 40 L O ILE 53 B O ILE 53 L N TYR 54 B N TYR 54 L O ASN 58 B O ASN 58 L N THR 119 B N THR 119 L O ASN 142 B O ASN 142 L N ALA 135 B N ALA 135 L O LEU 186 B O LEU 186 L O THR 183 B O THR 183 L N LEU 165 B N LEU 165 L N ASN 150 B N ASN 150 L O THR 202 B O THR 202 L N ALA 201 B N ALA 201 L O ILE 210 B O ILE 210 H N VAL 5 C N VAL 5 H O ALA 23 C O ALA 23 H N CYS 22 C N CYS 22 H O LEU 81 C O LEU 81 H N TYR 82 C N TYR 82 H O SER 73 C O SER 73 H N GLY 10 C N GLY 10 H O LEU 116 C O LEU 116 H N THR 115 C N THR 115 H O TYR 96 C O TYR 96 H O VAL 99 C O VAL 99 H N ASN 35 C N ASN 35 H N MET 34 C N MET 34 H O ILE 51 C O ILE 51 H N ARG 50 C N ARG 50 H O TYR 61 C O TYR 61 H N TYR 130 C N TYR 130 H O LEU 149 C O LEU 149 H N VAL 144 C N VAL 144 H O VAL 191 C O VAL 191 H N SER 188 C N SER 188 H O HIS 172 C O HIS 172 H N THR 161 C N THR 161 H O SER 204 C O SER 204 H N CYS 203 C N CYS 203 H O LYS 216 C O LYS 216 1 12.47 1.20 115.70 128.17 D D D C5' C4' C3' DT DT DT 1 1 1 N 1 4.70 0.70 110.30 115.00 D D D C1' O4' C4' DT DT DT 1 1 1 N 1 -4.87 0.70 102.20 97.33 D D D C4' C3' C2' DT DT DT 1 1 1 N 1 11.61 1.20 102.50 114.11 D D D C3' C2' C1' DT DT DT 1 1 1 N 1 -4.46 0.70 108.00 103.54 D D D O4' C1' N1 DT DT DT 1 1 1 N 1 -8.02 0.50 121.30 113.28 D D D C6 N1 C2 DT DT DT 1 1 1 N 1 -5.86 0.60 118.00 112.14 D D D C4 C5 C6 DT DT DT 1 1 1 N 1 11.32 0.60 123.70 135.02 D D D C5 C6 N1 DT DT DT 1 1 1 N 1 -4.22 0.60 122.30 118.08 D D D N3 C2 O2 DT DT DT 1 1 1 N 1 6.34 0.60 122.90 129.24 D D D C6 C5 C7 DT DT DT 1 1 1 N 1 10.57 1.50 120.40 130.97 D D D C6 N1 C1' DT DT DT 1 1 1 N 1 12.42 1.20 119.70 132.12 D D D C3' O3' P DT DT DT 1 1 2 Y 1 -11.40 1.90 104.00 92.60 D D D O3' P O5' DT DT DT 1 2 2 Y 1 16.93 1.20 115.70 132.63 D D D C5' C4' C3' DT DT DT 2 2 2 N 1 -7.52 1.00 110.10 102.58 D D D C1' O4' C4' DT DT DT 2 2 2 N 1 -10.89 0.70 102.20 91.31 D D D C4' C3' C2' DT DT DT 2 2 2 N 1 -8.94 0.80 105.90 96.96 D D D O4' C1' C2' DT DT DT 2 2 2 N 1 4.49 0.30 108.30 112.79 D D D O4' C1' N1 DT DT DT 2 2 2 N 1 -7.09 0.50 121.30 114.21 D D D C6 N1 C2 DT DT DT 2 2 2 N 1 -5.57 0.60 118.00 112.43 D D D C4 C5 C6 DT DT DT 2 2 2 N 1 10.27 0.60 123.70 133.97 D D D C5 C6 N1 DT DT DT 2 2 2 N 1 -4.17 0.60 119.90 115.73 D D D N3 C4 O4 DT DT DT 2 2 2 N 1 4.41 0.60 122.90 127.31 D D D C6 C5 C7 DT DT DT 2 2 2 N 1 11.64 1.50 120.40 132.04 D D D C6 N1 C1' DT DT DT 2 2 2 N 1 7.99 1.20 119.70 127.69 D D D C3' O3' P DT DT DT 2 2 3 Y 1 -17.35 0.40 104.50 87.15 D D D O4' C4' C3' DT DT DT 3 3 3 N 1 29.72 1.20 115.70 145.42 D D D C5' C4' C3' DT DT DT 3 3 3 N 1 -9.65 0.70 102.20 92.55 D D D C4' C3' C2' DT DT DT 3 3 3 N 1 -4.90 0.80 105.90 101.00 D D D O4' C1' C2' DT DT DT 3 3 3 N 1 -9.15 0.70 108.00 98.85 D D D O4' C1' N1 DT DT DT 3 3 3 N 1 -6.12 0.50 121.30 115.18 D D D C6 N1 C2 DT DT DT 3 3 3 N 1 -5.50 0.60 118.00 112.50 D D D C4 C5 C6 DT DT DT 3 3 3 N 1 9.27 0.60 123.70 132.97 D D D C5 C6 N1 DT DT DT 3 3 3 N 1 10.24 1.50 120.40 130.64 D D D C6 N1 C1' DT DT DT 3 3 3 N 1 3.36 0.50 120.30 123.66 L L L NE CZ NH2 ARG ARG ARG 24 24 24 N 1 3.75 0.50 120.30 124.05 L L L NE CZ NH2 ARG ARG ARG 59 59 59 N 1 7.55 0.90 118.30 125.85 L L L CB CG OD1 ASP ASP ASP 65 65 65 N 1 14.44 1.40 123.60 138.04 L L L CD NE CZ ARG ARG ARG 82 82 82 N 1 3.33 0.50 120.30 123.63 L L L NE CZ NH1 ARG ARG ARG 82 82 82 N 1 13.84 2.20 113.40 127.24 L L L CA CB CG GLU GLU GLU 86 86 86 N 1 12.17 2.00 118.30 130.47 L L L CG CD OE1 GLU GLU GLU 86 86 86 N 1 15.03 2.30 115.30 130.33 L L L CA CB CG LEU LEU LEU 88 88 88 N 1 4.44 0.50 120.30 124.74 L L L NE CZ NH1 ARG ARG ARG 113 113 113 N 1 6.47 0.90 118.30 124.77 L L L CB CG OD2 ASP ASP ASP 148 148 148 N 1 15.33 2.20 113.40 128.73 L L L CA CB CG LYS LYS LYS 152 152 152 N 1 12.94 2.00 110.40 123.34 L L L CB CA C ASP ASP ASP 170 170 170 N 1 6.39 0.90 118.30 124.69 L L L CB CG OD2 ASP ASP ASP 172 172 172 N 1 5.49 0.90 118.30 123.79 L L L CB CG OD1 ASP ASP ASP 175 175 175 N 1 23.43 2.30 115.30 138.73 L L L CA CB CG LEU LEU LEU 186 186 186 N 1 15.10 2.20 113.40 128.50 L L L CA CB CG GLU GLU GLU 190 190 190 N 1 3.92 0.60 121.00 124.92 L L L CB CG CD2 TYR TYR TYR 191 191 191 N 1 20.72 2.20 113.40 134.12 L L L CA CB CG GLU GLU GLU 200 200 200 N 1 16.86 2.20 113.40 130.26 H H H CA CB CG GLU GLU GLU 6 6 6 N 1 15.33 2.10 111.80 127.13 H H H CG CD NE ARG ARG ARG 38 38 38 N 1 -3.64 0.50 120.30 116.66 H H H NE CZ NH1 ARG ARG ARG 38 38 38 N 1 5.24 0.50 120.30 125.54 H H H NE CZ NH2 ARG ARG ARG 38 38 38 N 1 10.67 1.40 123.60 134.27 H H H CD NE CZ ARG ARG ARG 50 50 50 N 1 4.66 0.50 120.30 124.96 H H H NE CZ NH2 ARG ARG ARG 52 52 52 N 1 10.33 1.40 123.60 133.93 H H H CD NE CZ ARG ARG ARG 74 74 74 N 1 3.66 0.50 120.30 123.96 H H H NE CZ NH1 ARG ARG ARG 74 74 74 N 1 -3.86 0.50 120.30 116.44 H H H NE CZ NH2 ARG ARG ARG 74 74 74 N 1 6.46 0.90 118.30 124.76 H H H CB CG OD2 ASP ASP ASP 101 101 101 N 1 14.49 2.00 110.40 124.89 H H H CB CA C TRP TRP TRP 107 107 107 N 1 13.35 1.90 113.70 127.05 H H H CA CB CG TRP TRP TRP 107 107 107 N 1 16.35 2.30 115.30 131.65 H H H CA CB CG LEU LEU LEU 116 116 116 N 1 7.39 1.10 114.20 121.59 H H H CA CB SG CYS CYS CYS 136 136 136 N 1 7.01 0.90 118.30 125.31 H H H CB CG OD1 ASP ASP ASP 138 138 138 N 1 17.75 2.50 113.10 130.85 H H H N CA C GLY GLY GLY 152 152 152 N 1 8.73 1.40 112.40 121.13 H H H CA CB CG2 THR THR THR 161 161 161 N 1 6.35 0.90 118.30 124.65 H H H CB CG OD2 ASP ASP ASP 215 215 215 N 1 D D P OP3 DT DT 1 1 0.122 0.012 1.607 1.729 N 1 D D C4' C3' DT DT 1 1 0.069 0.010 1.529 1.598 N 1 D D C2' C1' DT DT 1 1 -0.171 0.010 1.518 1.347 N 1 D D O3' C3' DT DT 1 1 -0.145 0.006 1.419 1.274 N 1 D D N3 C4 DT DT 1 1 -0.061 0.008 1.382 1.321 N 1 D D C4 C5 DT DT 1 1 -0.080 0.009 1.445 1.365 N 1 D D C5 C6 DT DT 1 1 0.133 0.007 1.339 1.472 N 1 D D C6 N1 DT DT 1 1 -0.236 0.007 1.378 1.142 N 1 D D C2 O2 DT DT 1 1 0.132 0.008 1.220 1.352 N 1 D D C5 C7 DT DT 1 1 -0.049 0.006 1.496 1.447 N 1 D D O3' P DT DT 1 2 0.090 0.012 1.607 1.697 Y 1 D D C4' C3' DT DT 2 2 0.098 0.010 1.529 1.627 N 1 D D C3' C2' DT DT 2 2 0.074 0.012 1.518 1.592 N 1 D D C2' C1' DT DT 2 2 -0.067 0.010 1.518 1.451 N 1 D D O4' C4' DT DT 2 2 0.078 0.009 1.449 1.527 N 1 D D O3' C3' DT DT 2 2 -0.125 0.006 1.419 1.294 N 1 D D N1 C2 DT DT 2 2 0.068 0.008 1.376 1.444 N 1 D D N3 C4 DT DT 2 2 -0.074 0.008 1.382 1.308 N 1 D D C4 C5 DT DT 2 2 -0.079 0.009 1.445 1.366 N 1 D D C5 C6 DT DT 2 2 0.128 0.007 1.339 1.467 N 1 D D C6 N1 DT DT 2 2 -0.229 0.007 1.378 1.149 N 1 D D C2 O2 DT DT 2 2 0.150 0.008 1.220 1.370 N 1 D D C5 C7 DT DT 2 2 -0.036 0.006 1.496 1.460 N 1 D D C4' C3' DT DT 3 3 0.118 0.010 1.529 1.647 N 1 D D C3' C2' DT DT 3 3 0.076 0.012 1.518 1.594 N 1 D D C2' C1' DT DT 3 3 -0.131 0.010 1.518 1.387 N 1 D D O4' C1' DT DT 3 3 0.084 0.011 1.420 1.504 N 1 D D O3' C3' DT DT 3 3 -0.094 0.006 1.419 1.325 N 1 D D N1 C2 DT DT 3 3 0.082 0.008 1.376 1.458 N 1 D D N3 C4 DT DT 3 3 -0.062 0.008 1.382 1.320 N 1 D D C4 C5 DT DT 3 3 -0.080 0.009 1.445 1.365 N 1 D D C5 C6 DT DT 3 3 0.123 0.007 1.339 1.462 N 1 D D C6 N1 DT DT 3 3 -0.223 0.007 1.378 1.155 N 1 D D C2 O2 DT DT 3 3 0.142 0.008 1.220 1.362 N 1 D D C4 O4 DT DT 3 3 0.058 0.009 1.228 1.286 N 1 D D C5 C7 DT DT 3 3 -0.042 0.006 1.496 1.454 N 1 L L CD OE2 GLU GLU 86 86 0.109 0.011 1.252 1.361 N 1 L L CD OE1 GLU GLU 110 110 0.096 0.011 1.252 1.348 N 1 L L CD OE2 GLU GLU 190 190 0.076 0.011 1.252 1.328 N 1 L L CD OE2 GLU GLU 200 200 0.080 0.011 1.252 1.332 N 1 L L CD OE2 GLU GLU 218 218 0.079 0.011 1.252 1.331 N 1 H H CD OE2 GLU GLU 1 1 0.072 0.011 1.252 1.324 N 1 H H CD N PRO PRO 4 4 0.100 0.014 1.474 1.574 N 1 H H CD OE1 GLU GLU 6 6 0.077 0.011 1.252 1.329 N 1 H H CD OE2 GLU GLU 91 91 0.068 0.011 1.252 1.320 N 1 L LEU 15 -83.05 39.43 1 L VAL 30 -64.74 90.69 1 L HIS 31 -49.11 161.53 1 L ASN 33 170.70 102.15 1 L ASN 35 98.10 100.53 1 L THR 36 63.51 74.78 1 L LEU 52 -101.04 -68.65 1 L VAL 56 67.39 -49.96 1 L SER 61 -65.68 85.17 1 L PRO 64 -47.96 155.74 1 L ASP 65 -61.66 13.31 1 L VAL 83 -69.55 93.80 1 L SER 96 -140.93 45.01 1 L GLU 128 -39.31 -32.88 1 L TYR 145 -173.98 134.57 1 L ARG 160 48.32 -169.52 1 L ASN 162 -161.99 26.86 1 L LYS 174 131.47 -106.50 1 L SER 176 80.77 10.33 1 L THR 205 -88.91 30.99 1 L GLU 218 -164.32 -111.69 1 H GLN 3 60.30 130.52 1 H PHE 27 -1.69 -52.53 1 H SER 28 -153.14 69.45 1 H ASN 30 -25.44 -36.51 1 H PRO 41 -56.96 -5.71 1 H LYS 43 -170.26 -102.12 1 H ARG 52 -77.92 -153.44 1 H SER 53 -122.88 -168.69 1 H ASN 56 -83.52 43.46 1 H ASN 57 39.91 34.05 1 H ASP 68 65.85 -22.91 1 H SER 77 -28.04 -51.70 1 H ASN 87 28.47 57.80 1 H THR 93 -44.43 108.80 1 H GLN 102 -106.95 78.64 1 H THR 103 -57.78 104.43 1 H THR 105 -144.64 -58.12 1 H PHE 108 73.13 37.84 1 H SER 120 -174.84 148.11 1 H PRO 134 -25.78 -49.25 1 H CYS 136 -94.35 -136.75 1 H ASP 138 73.32 -131.72 1 H GLU 156 -1.62 -61.22 1 H SER 164 -150.85 70.95 1 H SER 166 68.95 -26.86 1 H SER 168 -44.12 46.45 1 H THR 195 -152.11 -11.65 1 H PRO 208 -52.94 -77.37 1 H ALA 209 -54.83 107.92 1 H SER 210 96.89 20.71 1 H SER 211 21.93 67.64 0.191 0.191 2.660 6.000 7759 1 2.660 6.000 0 3408 0 61 3347 0.018 0.033 0.018 0.025 0.033 0.030 0.026 0.030 0.011 0.025 0.155 0.150 0.190 0.300 0.243 0.300 0.227 0.300 5.600 3.000 23.00 15.00 29.00 15.00 refinement X-PLOR refinement PROLSQ FAB (BV04-01) AUTOANTIBODY/DNA COMPLEX AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE-FAB COMPLEX 1 N N 2 N N 3 N N L SER 126 B SER 126 HELX_P L SER 132 B SER 132 1 L1 7 L THR 187 B THR 187 HELX_P L ARG 193 B ARG 193 1 L2 7 H ASP 75 C ASP 75 HELX_P H ASN 79 C ASN 79 1 H1 5 H PRO 192 C PRO 192 HELX_P H GLN 199 C GLN 199 1 H2 8 disulf 2.018 L CYS 23 B SG CYS 23 1_555 L CYS 93 B SG CYS 93 1_555 disulf 1.984 L CYS 139 B SG CYS 139 1_555 L CYS 199 B SG CYS 199 1_555 disulf 2.018 L CYS 219 B SG CYS 219 1_555 H CYS 136 C SG CYS 136 1_555 disulf 2.016 H CYS 22 C SG CYS 22 1_555 H CYS 98 C SG CYS 98 1_555 disulf 1.989 H CYS 148 C SG CYS 148 1_555 H CYS 203 C SG CYS 203 1_555 IMMUNE SYSTEM/DNA PROTEIN-DNA COMPLEX, SINGLE STRAND, IMMUNE SYSTEM-DNA COMPLEX L THR 7 B THR 7 1 L PRO 8 B PRO 8 -1.52 L VAL 99 B VAL 99 1 L PRO 100 B PRO 100 7.17 L TYR 145 B TYR 145 1 L PRO 146 B PRO 146 1.89 H PHE 154 C PHE 154 1 H PRO 155 C PRO 155 1.26 H TRP 196 C TRP 196 1 H PRO 197 C PRO 197 -1.45 1CBV PDB 1 1CBV 1CBV PDB 2 1CBV 1CBV PDB 3 1CBV 1 3 1CBV 1 3 1CBV D 1 1 3 1 219 1CBV 1 219 1CBV L 2 1 219 1 219 1CBV 1 219 1CBV H 3 1 219 4 6 4 3 4 6 4 3 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L VAL 3 B VAL 3 L THR 7 B THR 7 L ALA 19 B ALA 19 L SER 26 B SER 26 L ASP 75 B ASP 75 L ILE 80 B ILE 80 L SER 68 B SER 68 L SER 72 B SER 72 L LEU 9 B LEU 9 L VAL 13 B VAL 13 L LEU 101 B LEU 101 L LYS 112 B LYS 112 L GLY 89 B GLY 89 L SER 96 B SER 96 L TYR 37 B TYR 37 L LYS 44 B LYS 44 L GLN 47 B GLN 47 L LYS 55 B LYS 55 L ASN 58 B ASN 58 L PHE 60 B PHE 60 L THR 119 B THR 119 L PHE 123 B PHE 123 L ALA 135 B ALA 135 L PHE 144 B PHE 144 L THR 177 B THR 177 L LEU 186 B LEU 186 L GLY 163 B GLY 163 L ASP 172 B ASP 172 L ASN 150 B ASN 150 L ASP 156 B ASP 156 L SER 196 B SER 196 L THR 202 B THR 202 L THR 207 B THR 207 L PHE 214 B PHE 214 H GLN 3 C GLN 3 H THR 7 C THR 7 H LEU 18 C LEU 18 H SER 25 C SER 25 H MET 80 C MET 80 H ASN 86 C ASN 86 H ARG 69 C ARG 69 H ASP 75 C ASP 75 H GLY 10 C GLY 10 H VAL 12 C VAL 12 H TYR 110 C TYR 110 H SER 120 C SER 120 H ALA 94 C ALA 94 H VAL 99 C VAL 99 H ALA 33 C ALA 33 H ALA 40 C ALA 40 H LYS 43 C LYS 43 H ARG 52 C ARG 52 H ALA 59 C ALA 59 H ALA 63 C ALA 63 H SER 128 C SER 128 H LEU 132 C LEU 132 H VAL 144 C VAL 144 H TYR 153 C TYR 153 H LEU 182 C LEU 182 H VAL 191 C VAL 191 H SER 170 C SER 170 H GLN 179 C GLN 179 H PHE 154 C PHE 154 H ASN 163 C ASN 163 H THR 195 C THR 195 H HIS 207 C HIS 207 H THR 212 C THR 212 H LEU 218 C LEU 218 Unknown 4 Unknown 4 Unknown 3 Unknown 3 Unknown 7 L HIS 31 B HIS 31 4 1_555 L SER 32 B SER 32 4 1_555 L TYR 37 B TYR 37 4 1_555 L HIS 39 B HIS 39 4 1_555 L SER 96 B SER 96 4 1_555 L THR 97 B THR 97 4 1_555 L HIS 98 B HIS 98 4 1_555 L VAL 99 B VAL 99 4 1_555 H THR 31 C THR 31 3 1_555 H ASN 32 C ASN 32 3 1_555 H ALA 33 C ALA 33 3 1_555 H ARG 52 C ARG 52 3 1_555 H SER 53 C SER 53 3 1_555 H ASN 56 C ASN 56 3 1_555 H ASP 101 C ASP 101 7 1_555 H GLN 102 C GLN 102 7 1_555 H THR 103 C THR 103 7 1_555 H GLY 104 C GLY 104 7 1_555 H THR 105 C THR 105 7 1_555 H ALA 106 C ALA 106 7 1_555 H TRP 107 C TRP 107 7 1_555 4 P 1 21 1