0.008589
0.004959
0.000000
0.000000
0.009917
0.000000
0.000000
0.000000
0.019410
0.00000
0.00000
0.00000
Ikemizu, S.
Sparks, L.M.
Van Der Merwe, P.A.
Harlos, K.
Stuart, D.I.
Jones, E.Y.
Davis, S.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
116.430
116.430
51.520
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
R
C
N
251
R
C
N
252
R
C
N
253
S
C
N
254
R
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
N
N
259
N
O
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
R
C
N
339
N
O
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
N
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
N
389
N
O
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
C
N
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
Y
278
N
doub
Y
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
96
4289
4294
10.1073/pnas.96.8.4289
10200255
Crystal structure of the CD2-binding domain of CD58 (lymphocyte function-associated antigen 3) at 1.8-A resolution.
1999
10.2210/pdb1ccz/pdb
pdb_00001ccz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1997-11
MAR scanner 345 mm plate
MAD
M
x-ray
1
0.8983
1.0
0.946
1.0
BM14
ESRF
0.8983,0.946
SYNCHROTRON
ESRF BEAMLINE BM14
19937.602
PROTEIN (CD58)
CD2-BINDING DOMAIN
1
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
3
man
non-polymer
18.015
water
197
nat
water
no
no
FSQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP
NITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQ
ESEMEVVNCPE
FSQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP
NITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQ
ESEMEVVNCPE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Chinese hamster
Cricetulus
sample
9606
Homo sapiens
10029
Cricetulus griseus
2
4.38
71.7
4.6
0.1M SODIUM ACETATE PH 4.6, 2.0 M SODIUM CHLORIDE
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
1999-04-05
1
1
2008-04-26
1
2
2011-07-13
1
3
2020-07-29
1
4
2023-08-09
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
PDBE
Y
RCSB
1999-03-02
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
HOH
water
1HNG
PDB ENTRY 1HNG
PDB
experimental model
NAG
501
2
NAG
NAG
501
A
NAG
502
2
NAG
NAG
502
A
NAG
503
2
NAG
NAG
503
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
207
3
HOH
HOH
207
A
HOH
208
3
HOH
HOH
208
A
HOH
209
3
HOH
HOH
209
A
HOH
210
3
HOH
HOH
210
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
213
3
HOH
HOH
213
A
HOH
214
3
HOH
HOH
214
A
HOH
215
3
HOH
HOH
215
A
HOH
216
3
HOH
HOH
216
A
HOH
217
3
HOH
HOH
217
A
HOH
218
3
HOH
HOH
218
A
HOH
219
3
HOH
HOH
219
A
HOH
220
3
HOH
HOH
220
A
HOH
221
3
HOH
HOH
221
A
HOH
222
3
HOH
HOH
222
A
HOH
223
3
HOH
HOH
223
A
HOH
224
3
HOH
HOH
224
A
HOH
225
3
HOH
HOH
225
A
HOH
226
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
228
3
HOH
HOH
228
A
HOH
229
3
HOH
HOH
229
A
HOH
230
3
HOH
HOH
230
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
235
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
238
3
HOH
HOH
238
A
HOH
239
3
HOH
HOH
239
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
243
3
HOH
HOH
243
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
252
3
HOH
HOH
252
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
HOH
255
3
HOH
HOH
255
A
HOH
256
3
HOH
HOH
256
A
HOH
257
3
HOH
HOH
257
A
HOH
258
3
HOH
HOH
258
A
HOH
259
3
HOH
HOH
259
A
HOH
260
3
HOH
HOH
260
A
HOH
261
3
HOH
HOH
261
A
HOH
262
3
HOH
HOH
262
A
HOH
263
3
HOH
HOH
263
A
HOH
264
3
HOH
HOH
264
A
HOH
265
3
HOH
HOH
265
A
HOH
266
3
HOH
HOH
266
A
HOH
267
3
HOH
HOH
267
A
HOH
268
3
HOH
HOH
268
A
HOH
269
3
HOH
HOH
269
A
HOH
270
3
HOH
HOH
270
A
HOH
271
3
HOH
HOH
271
A
HOH
272
3
HOH
HOH
272
A
HOH
273
3
HOH
HOH
273
A
HOH
274
3
HOH
HOH
274
A
HOH
275
3
HOH
HOH
275
A
HOH
276
3
HOH
HOH
276
A
HOH
277
3
HOH
HOH
277
A
HOH
278
3
HOH
HOH
278
A
HOH
279
3
HOH
HOH
279
A
HOH
280
3
HOH
HOH
280
A
HOH
281
3
HOH
HOH
281
A
HOH
282
3
HOH
HOH
282
A
HOH
283
3
HOH
HOH
283
A
HOH
284
3
HOH
HOH
284
A
HOH
285
3
HOH
HOH
285
A
HOH
286
3
HOH
HOH
286
A
HOH
287
3
HOH
HOH
287
A
HOH
288
3
HOH
HOH
288
A
HOH
289
3
HOH
HOH
289
A
HOH
290
3
HOH
HOH
290
A
HOH
291
3
HOH
HOH
291
A
HOH
292
3
HOH
HOH
292
A
HOH
293
3
HOH
HOH
293
A
HOH
294
3
HOH
HOH
294
A
HOH
295
3
HOH
HOH
295
A
HOH
296
3
HOH
HOH
296
A
HOH
297
3
HOH
HOH
297
A
HOH
298
3
HOH
HOH
298
A
HOH
299
3
HOH
HOH
299
A
HOH
300
3
HOH
HOH
300
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
355
3
HOH
HOH
355
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
361
3
HOH
HOH
361
A
HOH
362
3
HOH
HOH
362
A
HOH
363
3
HOH
HOH
363
A
HOH
364
3
HOH
HOH
364
A
HOH
365
3
HOH
HOH
365
A
HOH
366
3
HOH
HOH
366
A
HOH
367
3
HOH
HOH
367
A
HOH
368
3
HOH
HOH
368
A
HOH
369
3
HOH
HOH
369
A
HOH
370
3
HOH
HOH
370
A
HOH
371
3
HOH
HOH
371
A
HOH
372
3
HOH
HOH
372
A
HOH
373
3
HOH
HOH
373
A
HOH
374
3
HOH
HOH
374
A
HOH
375
3
HOH
HOH
375
A
HOH
376
3
HOH
HOH
376
A
HOH
377
3
HOH
HOH
377
A
HOH
378
3
HOH
HOH
378
A
HOH
379
3
HOH
HOH
379
A
HOH
380
3
HOH
HOH
380
A
HOH
381
3
HOH
HOH
381
A
HOH
382
3
HOH
HOH
382
A
HOH
383
3
HOH
HOH
383
A
HOH
384
3
HOH
HOH
384
A
HOH
385
3
HOH
HOH
385
A
HOH
386
3
HOH
HOH
386
A
HOH
387
3
HOH
HOH
387
A
HOH
388
3
HOH
HOH
388
A
HOH
389
3
HOH
HOH
389
A
HOH
390
3
HOH
HOH
390
A
HOH
391
3
HOH
HOH
391
A
HOH
392
3
HOH
HOH
392
A
HOH
393
3
HOH
HOH
393
A
HOH
394
3
HOH
HOH
394
A
HOH
395
3
HOH
HOH
395
A
HOH
396
3
HOH
HOH
396
A
HOH
397
3
HOH
HOH
397
A
PHE
1
n
1
PHE
1
A
SER
2
n
2
SER
2
A
GLN
3
n
3
GLN
3
A
GLN
4
n
4
GLN
4
A
ILE
5
n
5
ILE
5
A
TYR
6
n
6
TYR
6
A
GLY
7
n
7
GLY
7
A
VAL
8
n
8
VAL
8
A
VAL
9
n
9
VAL
9
A
TYR
10
n
10
TYR
10
A
GLY
11
n
11
GLY
11
A
ASN
12
n
12
ASN
12
A
VAL
13
n
13
VAL
13
A
THR
14
n
14
THR
14
A
PHE
15
n
15
PHE
15
A
HIS
16
n
16
HIS
16
A
VAL
17
n
17
VAL
17
A
PRO
18
n
18
PRO
18
A
SER
19
n
19
SER
19
A
ASN
20
n
20
ASN
20
A
VAL
21
n
21
VAL
21
A
PRO
22
n
22
PRO
22
A
LEU
23
n
23
LEU
23
A
LYS
24
n
24
LYS
24
A
GLU
25
n
25
GLU
25
A
VAL
26
n
26
VAL
26
A
LEU
27
n
27
LEU
27
A
TRP
28
n
28
TRP
28
A
LYS
29
n
29
LYS
29
A
LYS
30
n
30
LYS
30
A
GLN
31
n
31
GLN
31
A
LYS
32
n
32
LYS
32
A
ASP
33
n
33
ASP
33
A
LYS
34
n
34
LYS
34
A
VAL
35
n
35
VAL
35
A
ALA
36
n
36
ALA
36
A
GLU
37
n
37
GLU
37
A
LEU
38
n
38
LEU
38
A
GLU
39
n
39
GLU
39
A
ASN
40
n
40
ASN
40
A
SER
41
n
41
SER
41
A
GLU
42
n
42
GLU
42
A
PHE
43
n
43
PHE
43
A
ARG
44
n
44
ARG
44
A
ALA
45
n
45
ALA
45
A
PHE
46
n
46
PHE
46
A
SER
47
n
47
SER
47
A
SER
48
n
48
SER
48
A
PHE
49
n
49
PHE
49
A
LYS
50
n
50
LYS
50
A
ASN
51
n
51
ASN
51
A
ARG
52
n
52
ARG
52
A
VAL
53
n
53
VAL
53
A
TYR
54
n
54
TYR
54
A
LEU
55
n
55
LEU
55
A
ASP
56
n
56
ASP
56
A
THR
57
n
57
THR
57
A
VAL
58
n
58
VAL
58
A
SER
59
n
59
SER
59
A
GLY
60
n
60
GLY
60
A
SER
61
n
61
SER
61
A
LEU
62
n
62
LEU
62
A
THR
63
n
63
THR
63
A
ILE
64
n
64
ILE
64
A
TYR
65
n
65
TYR
65
A
ASN
66
n
66
ASN
66
A
LEU
67
n
67
LEU
67
A
THR
68
n
68
THR
68
A
SER
69
n
69
SER
69
A
SER
70
n
70
SER
70
A
ASP
71
n
71
ASP
71
A
GLU
72
n
72
GLU
72
A
ASP
73
n
73
ASP
73
A
GLU
74
n
74
GLU
74
A
TYR
75
n
75
TYR
75
A
GLU
76
n
76
GLU
76
A
MET
77
n
77
MET
77
A
GLU
78
n
78
GLU
78
A
SER
79
n
79
SER
79
A
PRO
80
n
80
PRO
80
A
ASN
81
n
81
ASN
81
A
ILE
82
n
82
ILE
82
A
THR
83
n
83
THR
83
A
ASP
84
n
84
ASP
84
A
THR
85
n
85
THR
85
A
MET
86
n
86
MET
86
A
LYS
87
n
87
LYS
87
A
PHE
88
n
88
PHE
88
A
PHE
89
n
89
PHE
89
A
LEU
90
n
90
LEU
90
A
TYR
91
n
91
TYR
91
A
VAL
92
n
92
VAL
92
A
LEU
93
n
93
LEU
93
A
GLU
94
n
94
GLU
94
A
MET
95
n
95
MET
95
A
VAL
96
n
96
VAL
96
A
SER
97
n
97
SER
97
A
LYS
98
n
98
LYS
98
A
PRO
99
n
99
PRO
99
A
MET
100
n
100
MET
100
A
ILE
101
n
101
ILE
101
A
TYR
102
n
102
TYR
102
A
TRP
103
n
103
TRP
103
A
GLU
104
n
104
GLU
104
A
CYS
105
n
105
CYS
105
A
SER
106
n
106
SER
106
A
ASN
107
n
107
ASN
107
A
ALA
108
n
108
ALA
108
A
THR
109
n
109
THR
109
A
LEU
110
n
110
LEU
110
A
THR
111
n
111
THR
111
A
CYS
112
n
112
CYS
112
A
GLU
113
n
113
GLU
113
A
VAL
114
n
114
VAL
114
A
LEU
115
n
115
LEU
115
A
GLU
116
n
116
GLU
116
A
GLY
117
n
117
GLY
117
A
THR
118
n
118
THR
118
A
ASP
119
n
119
ASP
119
A
VAL
120
n
120
VAL
120
A
GLU
121
n
121
GLU
121
A
LEU
122
n
122
LEU
122
A
LYS
123
n
123
LYS
123
A
LEU
124
n
124
LEU
124
A
TYR
125
n
125
TYR
125
A
GLN
126
n
126
GLN
126
A
GLY
127
n
127
GLY
127
A
LYS
128
n
128
LYS
128
A
GLU
129
n
129
GLU
129
A
HIS
130
n
130
HIS
130
A
LEU
131
n
131
LEU
131
A
ARG
132
n
132
ARG
132
A
SER
133
n
133
SER
133
A
LEU
134
n
134
LEU
134
A
ARG
135
n
135
ARG
135
A
GLN
136
n
136
GLN
136
A
LYS
137
n
137
LYS
137
A
THR
138
n
138
THR
138
A
MET
139
n
139
MET
139
A
SER
140
n
140
SER
140
A
TYR
141
n
141
TYR
141
A
GLN
142
n
142
GLN
142
A
TRP
143
n
143
TRP
143
A
THR
144
n
144
THR
144
A
ASN
145
n
145
ASN
145
A
LEU
146
n
146
LEU
146
A
ARG
147
n
147
ARG
147
A
ALA
148
n
148
ALA
148
A
PRO
149
n
149
PRO
149
A
PHE
150
n
150
PHE
150
A
LYS
151
n
151
LYS
151
A
CYS
152
n
152
CYS
152
A
LYS
153
n
153
LYS
153
A
ALA
154
n
154
ALA
154
A
VAL
155
n
155
VAL
155
A
ASN
156
n
156
ASN
156
A
ARG
157
n
157
ARG
157
A
VAL
158
n
158
VAL
158
A
SER
159
n
159
SER
159
A
GLN
160
n
160
GLN
160
A
GLU
161
n
161
GLU
161
A
SER
162
n
162
SER
162
A
GLU
163
n
163
GLU
163
A
MET
164
n
164
MET
164
A
GLU
165
n
165
GLU
165
A
VAL
166
n
166
VAL
166
A
VAL
167
n
167
VAL
167
A
ASN
168
n
168
ASN
168
A
CYS
169
n
169
CYS
169
A
PRO
170
n
170
PRO
170
A
GLU
171
n
171
GLU
171
A
author_defined_assembly
1
monomeric
A
ASN
12
GLYCOSYLATION SITE
A
ASN
12
ASN
A
ASN
66
GLYCOSYLATION SITE
A
ASN
66
ASN
A
ASN
107
GLYCOSYLATION SITE
A
ASN
107
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLN
3
A
O
GLN
3
A
N
LYS
87
A
N
LYS
87
A
O
MET
86
A
O
MET
86
A
N
MET
77
A
N
MET
77
A
O
GLU
76
A
O
GLU
76
A
N
LYS
29
A
N
LYS
29
A
O
VAL
26
A
O
VAL
26
A
N
LEU
38
A
N
LEU
38
A
O
GLU
37
A
O
GLU
37
A
N
ARG
44
A
N
ARG
44
A
O
VAL
13
A
O
VAL
13
A
N
ILE
64
A
N
ILE
64
A
O
THR
63
A
O
THR
63
A
N
TYR
54
A
N
TYR
54
A
O
MET
100
A
O
MET
100
A
N
GLU
113
A
N
GLU
113
A
O
LEU
124
A
O
LEU
124
A
N
ARG
132
A
N
ARG
132
A
O
PHE
150
A
O
PHE
150
A
N
GLU
165
A
N
GLU
165
1
13.90
2.30
115.30
129.20
A
A
A
CA
CB
CG
LEU
LEU
LEU
110
110
110
N
1
A
TYR
10
69.30
-6.93
1
A
PRO
18
-37.07
113.08
1
A
ASN
20
-129.80
-99.57
1
A
GLN
31
74.13
-116.92
1
A
SER
47
45.08
-131.38
1
A
ASP
73
177.23
-179.57
1
A
ALA
108
39.45
47.67
PARHCSDX.PRO
TOPHCSDX.PRO
PARAM3.CHO
TOPH3.CHO
PARAM11.WAT
TOPH11.WAT
33.9
1.56
2.00
0.00
1.56
0.00
-3.12
0.243
0.006
0.2018
1.8
15.0
1785
35955
5.0
96.3
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1HNG
0.29
0.25
5.0
0.28
0.29
1.8
15.0
197
1637
42
0
1398
0.011
1.6
28.5
0.88
2.19
1.50
3.71
2.00
3.70
2.00
5.86
2.50
0.3452
0.021
0.3347
1.88
193
3902
8
4.7
88.8
14.7
1.80
30.0
1CCZ
187375
0.09
1
15.9
5.0
100.0
0.423
1.8
1.86
2.3
1
100.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
X-PLOR
3.851
CRYSTAL STRUCTURE OF THE CD2-BINDING DOMAIN OF CD58 (LYMPHOCYTE FUNCTION-ASSOCIATED ANTIGEN 3) AT 1.8-A RESOLUTION
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
A
PHE
46
A
PHE
46
HELX_P
A
LYS
50
A
LYS
50
5
H1
5
A
THR
68
A
THR
68
HELX_P
A
GLU
72
A
GLU
72
5
H2
5
disulf
2.034
A
CYS
105
A
SG
CYS
105
1_555
A
CYS
169
A
SG
CYS
169
1_555
disulf
2.004
A
CYS
112
A
SG
CYS
112
1_555
A
CYS
152
A
SG
CYS
152
1_555
covale
1.449
one
N-Glycosylation
A
ASN
12
A
ND2
ASN
12
1_555
A
NAG
501
B
C1
NAG
1_555
covale
1.450
one
N-Glycosylation
A
ASN
66
A
ND2
ASN
66
1_555
A
NAG
502
C
C1
NAG
1_555
covale
1.444
one
N-Glycosylation
A
ASN
107
A
ND2
ASN
107
1_555
A
NAG
503
D
C1
NAG
1_555
GLYCOPROTEIN
CD58, LFA-3, GLYCOPROTEIN
LFA3_HUMAN
UNP
1
P19256
29
122
1CCZ
1
94
P19256
A
1
1
94
6
3
2
2
2
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
2
A
SER
2
A
VAL
8
A
VAL
8
A
MET
86
A
MET
86
A
LEU
93
A
LEU
93
A
ASP
73
A
ASP
73
A
GLU
78
A
GLU
78
A
VAL
26
A
VAL
26
A
LYS
30
A
LYS
30
A
ASP
33
A
ASP
33
A
GLU
39
A
GLU
39
A
GLU
42
A
GLU
42
A
ALA
45
A
ALA
45
A
VAL
13
A
VAL
13
A
PHE
15
A
PHE
15
A
LEU
62
A
LEU
62
A
ILE
64
A
ILE
64
A
VAL
53
A
VAL
53
A
LEU
55
A
LEU
55
A
MET
100
A
MET
100
A
GLU
104
A
GLU
104
A
THR
109
A
THR
109
A
GLU
113
A
GLU
113
A
LEU
124
A
LEU
124
A
GLN
126
A
GLN
126
A
GLU
129
A
GLU
129
A
ARG
132
A
ARG
132
A
PHE
150
A
PHE
150
A
ASN
156
A
ASN
156
A
SER
159
A
SER
159
A
GLU
165
A
GLU
165
154
P 32 2 1