1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Vranken, W.F.
Fant, F.
Budesinsky, M.
Borremans, F.A.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
N
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
Y
210
N
C
Y
211
N
C
Y
212
N
C
Y
213
N
C
Y
214
N
C
Y
215
N
C
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
O
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
R
C
N
264
N
O
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
N
287
N
O
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
Y
206
N
doub
Y
207
N
sing
Y
208
N
sing
N
209
N
sing
Y
210
N
doub
N
211
N
sing
Y
212
N
doub
N
213
N
sing
Y
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
Y
275
N
doub
Y
276
N
sing
Y
277
N
sing
N
278
N
sing
Y
279
N
doub
N
280
N
sing
Y
281
N
doub
N
282
N
sing
Y
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
NE
FEBS Lett.
FEBLAL
0165
0014-5793
374
117
121
10.1016/0014-5793(95)01086-T
7589496
The complete Consensus V3 loop peptide of the envelope protein gp120 of HIV-1 shows pronounced helical character in solution.
1995
10.2210/pdb1ce4/pdb
pdb_00001ce4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
THIS V3 LOOP PEPTIDE IS A FRAGMENT OF THE GP120 ENVELOPE PROTEIN OF HIV-1.
3905.409
PROTEIN (V3 LOOP OF HIV-1 ENVELOPE PROTEIN)
1
syn
polymer
no
no
CTRPNNNTRKSIHIGPGRAFYTTGEIIGDIRQAHC
CTRPNNNTRKSIHIGPGRAFYTTGEIIGDIRQAHC
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
pdbx_nmr_software
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
Database references
1
0
1999-03-18
1
1
2008-04-26
1
2
2011-07-13
1
3
2018-03-14
1
4
2023-12-27
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
PDBE
Y
RCSB
1999-03-15
REL
REL
SEQUENCE TAKEN FROM HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (CLONE 12), GENE ENV
sample
LOWEST TARGET FUNCTION
500
20
TOCSY
NOESY
CT-NOESY
2.5
1
atm
290
K
THE 20 STRUCTURES WITH LOWEST TARGET FUNCTION FROM DIANA WERE ENERGY MINIMIZED IN THE AMBER FORCE FIELD USING 500 ITERATIONS STEEPEST DESCENT FOLLOWED BY 500 ITERATIONS CONJUGATE GRADIENT MINIMIZATION.
distance geometry
1
10% D2O/70% WATER/20% D3-TRIFLUOROETHANOL
BIOSYM
refinement
Discover
structure solution
UXNMR
structure solution
Pronto
structure solution
DIANA
500
Bruker
AM
CYS
1
n
1
CYS
1
A
THR
2
n
2
THR
2
A
ARG
3
n
3
ARG
3
A
PRO
4
n
4
PRO
4
A
ASN
5
n
5
ASN
5
A
ASN
6
n
6
ASN
6
A
ASN
7
n
7
ASN
7
A
THR
8
n
8
THR
8
A
ARG
9
n
9
ARG
9
A
LYS
10
n
10
LYS
10
A
SER
11
n
11
SER
11
A
ILE
12
n
12
ILE
12
A
HIS
13
n
13
HIS
13
A
ILE
14
n
14
ILE
14
A
GLY
15
n
15
GLY
15
A
PRO
16
n
16
PRO
16
A
GLY
17
n
17
GLY
17
A
ARG
18
n
18
ARG
18
A
ALA
19
n
19
ALA
19
A
PHE
20
n
20
PHE
20
A
TYR
21
n
21
TYR
21
A
THR
22
n
22
THR
22
A
THR
23
n
23
THR
23
A
GLY
24
n
24
GLY
24
A
GLU
25
n
25
GLU
25
A
ILE
26
n
26
ILE
26
A
ILE
27
n
27
ILE
27
A
GLY
28
n
28
GLY
28
A
ASP
29
n
29
ASP
29
A
ILE
30
n
30
ILE
30
A
ARG
31
n
31
ARG
31
A
GLN
32
n
32
GLN
32
A
ALA
33
n
33
ALA
33
A
HIS
34
n
34
HIS
34
A
CYS
35
n
35
CYS
35
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
2
A
A
HH12
HE2
ARG
HIS
31
34
0.90
7
A
A
HE2
HE2
HIS
GLU
13
25
1.21
10
A
A
HH12
HE2
ARG
HIS
31
34
0.99
14
A
A
HH12
HE2
ARG
HIS
31
34
0.95
15
A
A
HE2
HE2
HIS
GLU
13
25
1.17
19
A
A
HG1
HH21
THR
ARG
2
31
1.23
1
A
ARG
3
0.140
SIDE CHAIN
2
A
ARG
9
0.075
SIDE CHAIN
2
A
ARG
18
0.122
SIDE CHAIN
2
A
TYR
21
0.153
SIDE CHAIN
3
A
ARG
3
0.116
SIDE CHAIN
3
A
ARG
9
0.085
SIDE CHAIN
3
A
PHE
20
0.079
SIDE CHAIN
3
A
TYR
21
0.144
SIDE CHAIN
4
A
TYR
21
0.150
SIDE CHAIN
5
A
PHE
20
0.093
SIDE CHAIN
5
A
TYR
21
0.071
SIDE CHAIN
6
A
ARG
3
0.089
SIDE CHAIN
7
A
TYR
21
0.129
SIDE CHAIN
8
A
ARG
3
0.084
SIDE CHAIN
9
A
ARG
18
0.078
SIDE CHAIN
9
A
PHE
20
0.090
SIDE CHAIN
9
A
TYR
21
0.184
SIDE CHAIN
10
A
ARG
3
0.094
SIDE CHAIN
10
A
TYR
21
0.070
SIDE CHAIN
11
A
TYR
21
0.131
SIDE CHAIN
12
A
ARG
3
0.096
SIDE CHAIN
12
A
PHE
20
0.076
SIDE CHAIN
12
A
TYR
21
0.130
SIDE CHAIN
13
A
PHE
20
0.078
SIDE CHAIN
13
A
TYR
21
0.191
SIDE CHAIN
18
A
TYR
21
0.128
SIDE CHAIN
19
A
ARG
3
0.101
SIDE CHAIN
19
A
ARG
9
0.182
SIDE CHAIN
19
A
TYR
21
0.224
SIDE CHAIN
20
A
TYR
21
0.118
SIDE CHAIN
2
7.42
1.10
114.20
121.62
A
A
A
CA
CB
SG
CYS
CYS
CYS
35
35
35
N
3
7.73
1.10
114.20
121.93
A
A
A
CA
CB
SG
CYS
CYS
CYS
1
1
1
N
3
3.82
0.50
120.30
124.12
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
9
9
9
N
4
11.23
1.10
114.20
125.43
A
A
A
CA
CB
SG
CYS
CYS
CYS
1
1
1
N
4
12.42
2.00
110.40
122.82
A
A
A
CB
CA
C
TYR
TYR
TYR
21
21
21
N
4
-3.95
0.60
121.00
117.05
A
A
A
CB
CG
CD2
TYR
TYR
TYR
21
21
21
N
5
7.44
1.10
114.20
121.64
A
A
A
CA
CB
SG
CYS
CYS
CYS
1
1
1
N
6
-3.18
0.50
120.30
117.12
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
3
3
3
N
6
9.50
1.40
123.60
133.10
A
A
A
CD
NE
CZ
ARG
ARG
ARG
18
18
18
N
6
-3.94
0.50
120.30
116.36
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
18
18
18
N
6
8.71
1.10
114.20
122.91
A
A
A
CA
CB
SG
CYS
CYS
CYS
35
35
35
N
7
11.18
1.40
123.60
134.78
A
A
A
CD
NE
CZ
ARG
ARG
ARG
9
9
9
N
7
7.64
1.10
114.20
121.84
A
A
A
CA
CB
SG
CYS
CYS
CYS
35
35
35
N
8
-5.03
0.60
121.00
115.97
A
A
A
CB
CG
CD2
TYR
TYR
TYR
21
21
21
N
8
6.68
1.10
114.20
120.88
A
A
A
CA
CB
SG
CYS
CYS
CYS
35
35
35
N
9
9.60
1.10
114.20
123.80
A
A
A
CA
CB
SG
CYS
CYS
CYS
1
1
1
N
10
7.51
1.10
114.20
121.71
A
A
A
CA
CB
SG
CYS
CYS
CYS
1
1
1
N
12
3.76
0.50
120.30
124.06
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
18
18
18
N
12
-3.11
0.50
120.30
117.19
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
18
18
18
N
13
9.31
1.10
114.20
123.51
A
A
A
CA
CB
SG
CYS
CYS
CYS
1
1
1
N
13
-3.34
0.50
120.30
116.96
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
9
9
9
N
14
7.74
1.10
114.20
121.94
A
A
A
CA
CB
SG
CYS
CYS
CYS
35
35
35
N
16
7.84
1.10
114.20
122.04
A
A
A
CA
CB
SG
CYS
CYS
CYS
35
35
35
N
17
-10.90
1.80
110.60
99.70
A
A
A
N
CA
CB
ARG
ARG
ARG
9
9
9
N
19
11.56
1.10
114.20
125.76
A
A
A
CA
CB
SG
CYS
CYS
CYS
1
1
1
N
19
3.77
0.50
120.30
124.07
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
9
9
9
N
19
9.16
1.40
123.60
132.76
A
A
A
CD
NE
CZ
ARG
ARG
ARG
18
18
18
N
19
3.09
0.50
120.30
123.39
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
18
18
18
N
19
-4.75
0.60
121.00
116.25
A
A
A
CB
CG
CD2
TYR
TYR
TYR
21
21
21
N
19
-4.27
0.60
121.00
116.73
A
A
A
CB
CG
CD1
TYR
TYR
TYR
21
21
21
N
1
A
A
CD
OE2
GLU
GLU
25
25
0.100
0.011
1.252
1.352
N
1
A
A
C
OXT
CYS
CYS
35
35
0.126
0.019
1.229
1.355
N
2
A
A
CD
OE2
GLU
GLU
25
25
0.101
0.011
1.252
1.353
N
2
A
A
C
OXT
CYS
CYS
35
35
0.126
0.019
1.229
1.355
N
3
A
A
CD
OE2
GLU
GLU
25
25
0.105
0.011
1.252
1.357
N
3
A
A
C
OXT
CYS
CYS
35
35
0.134
0.019
1.229
1.363
N
4
A
A
CD
OE2
GLU
GLU
25
25
0.100
0.011
1.252
1.352
N
4
A
A
C
OXT
CYS
CYS
35
35
0.127
0.019
1.229
1.356
N
5
A
A
CD
OE2
GLU
GLU
25
25
0.101
0.011
1.252
1.353
N
5
A
A
C
OXT
CYS
CYS
35
35
0.126
0.019
1.229
1.355
N
6
A
A
CD
OE2
GLU
GLU
25
25
0.101
0.011
1.252
1.353
N
6
A
A
C
OXT
CYS
CYS
35
35
0.126
0.019
1.229
1.355
N
7
A
A
CD
OE2
GLU
GLU
25
25
0.101
0.011
1.252
1.353
N
7
A
A
C
OXT
CYS
CYS
35
35
0.125
0.019
1.229
1.354
N
8
A
A
CD
OE2
GLU
GLU
25
25
0.100
0.011
1.252
1.352
N
8
A
A
C
OXT
CYS
CYS
35
35
0.133
0.019
1.229
1.362
N
9
A
A
CD
OE2
GLU
GLU
25
25
0.101
0.011
1.252
1.353
N
9
A
A
C
OXT
CYS
CYS
35
35
0.134
0.019
1.229
1.363
N
10
A
A
CD
OE2
GLU
GLU
25
25
0.104
0.011
1.252
1.356
N
10
A
A
C
OXT
CYS
CYS
35
35
0.127
0.019
1.229
1.356
N
11
A
A
CD
OE2
GLU
GLU
25
25
0.101
0.011
1.252
1.353
N
11
A
A
C
OXT
CYS
CYS
35
35
0.126
0.019
1.229
1.355
N
12
A
A
CD
OE2
GLU
GLU
25
25
0.100
0.011
1.252
1.352
N
12
A
A
C
OXT
CYS
CYS
35
35
0.127
0.019
1.229
1.356
N
13
A
A
CD
OE2
GLU
GLU
25
25
0.102
0.011
1.252
1.354
N
13
A
A
C
OXT
CYS
CYS
35
35
0.126
0.019
1.229
1.355
N
14
A
A
CD
OE2
GLU
GLU
25
25
0.100
0.011
1.252
1.352
N
14
A
A
C
OXT
CYS
CYS
35
35
0.134
0.019
1.229
1.363
N
15
A
A
CD
OE2
GLU
GLU
25
25
0.101
0.011
1.252
1.353
N
15
A
A
C
OXT
CYS
CYS
35
35
0.127
0.019
1.229
1.356
N
16
A
A
CD
OE2
GLU
GLU
25
25
0.101
0.011
1.252
1.353
N
16
A
A
C
OXT
CYS
CYS
35
35
0.127
0.019
1.229
1.356
N
17
A
A
CD
OE2
GLU
GLU
25
25
0.101
0.011
1.252
1.353
N
17
A
A
C
OXT
CYS
CYS
35
35
0.125
0.019
1.229
1.354
N
18
A
A
CD
OE2
GLU
GLU
25
25
0.101
0.011
1.252
1.353
N
18
A
A
C
OXT
CYS
CYS
35
35
0.126
0.019
1.229
1.355
N
19
A
A
CD
OE2
GLU
GLU
25
25
0.103
0.011
1.252
1.355
N
19
A
A
C
OXT
CYS
CYS
35
35
0.134
0.019
1.229
1.363
N
20
A
A
CD
OE2
GLU
GLU
25
25
0.102
0.011
1.252
1.354
N
20
A
A
C
OXT
CYS
CYS
35
35
0.126
0.019
1.229
1.355
N
1
A
ARG
3
-100.28
46.46
1
A
PRO
4
-84.41
-105.55
1
A
ASN
5
31.51
-80.65
1
A
ASN
6
-51.53
-7.22
1
A
THR
8
34.77
62.62
1
A
SER
11
158.48
69.47
1
A
ILE
14
-75.60
-129.97
1
A
THR
22
80.52
132.69
1
A
HIS
34
-82.89
37.67
2
A
THR
2
-53.34
-138.07
2
A
ARG
3
-107.03
58.97
2
A
ASN
5
-62.55
26.53
2
A
ASN
6
-61.99
52.83
2
A
ASN
7
-179.11
-90.03
2
A
LYS
10
66.29
64.78
2
A
ILE
14
-99.21
-75.85
2
A
PHE
20
-153.85
2.78
2
A
THR
22
174.92
121.81
2
A
ALA
33
-72.96
23.79
3
A
PRO
4
-78.10
-166.74
3
A
ASN
5
32.85
-132.69
3
A
ASN
6
54.89
14.54
3
A
ASN
7
148.40
-28.71
3
A
THR
8
65.40
-18.27
3
A
ARG
9
9.60
-109.51
3
A
LYS
10
27.97
48.96
3
A
SER
11
-150.44
55.68
3
A
HIS
13
-64.40
-96.19
3
A
TYR
21
20.90
12.49
3
A
THR
22
67.77
122.81
3
A
ALA
33
-75.95
40.04
4
A
THR
2
-118.46
-162.06
4
A
PRO
4
-67.63
-80.14
4
A
ASN
5
33.88
-56.07
4
A
ASN
6
-38.47
-4.96
4
A
LYS
10
102.49
62.01
4
A
PHE
20
-165.50
-7.03
4
A
TYR
21
-57.42
-127.75
4
A
ALA
33
-74.59
29.67
5
A
THR
2
-42.78
-131.03
5
A
PRO
4
-83.72
-119.14
5
A
ASN
5
-157.30
5.68
5
A
ASN
7
69.10
-28.11
5
A
HIS
13
-56.62
-96.77
5
A
ILE
14
55.55
-73.93
5
A
TYR
21
30.53
10.67
5
A
THR
22
63.65
123.61
5
A
HIS
34
-143.66
-5.40
6
A
THR
2
-53.72
-131.85
6
A
ARG
3
-98.10
41.52
6
A
ASN
7
109.81
-0.85
6
A
SER
11
-154.06
70.30
6
A
ILE
14
-161.89
-9.88
6
A
TYR
21
-43.37
-8.42
6
A
THR
22
83.43
138.04
6
A
ALA
33
-72.91
20.96
7
A
THR
2
-54.86
-162.14
7
A
ASN
6
-60.96
50.52
7
A
ASN
7
57.23
9.09
7
A
THR
8
-69.48
20.71
7
A
ARG
9
-68.16
62.09
7
A
HIS
13
-91.47
-89.32
7
A
TYR
21
-58.57
-7.33
7
A
THR
22
76.83
127.07
7
A
ALA
33
-73.35
36.18
8
A
THR
2
-53.80
-137.24
8
A
PRO
4
-96.62
-81.28
8
A
ASN
5
-149.00
-68.28
8
A
ASN
6
-69.82
-164.67
8
A
ASN
7
58.57
-58.32
8
A
SER
11
62.57
62.80
8
A
HIS
13
-31.79
-76.33
8
A
ILE
14
-62.46
-80.09
8
A
PHE
20
-143.63
16.53
8
A
TYR
21
-77.46
42.26
8
A
THR
22
78.82
124.37
9
A
ARG
3
-34.71
118.36
9
A
ASN
5
-32.00
76.84
9
A
ASN
6
51.78
74.87
9
A
ARG
9
-84.25
-107.66
9
A
LYS
10
143.70
147.46
9
A
SER
11
-149.43
53.46
9
A
HIS
13
-54.17
-102.71
9
A
ILE
14
48.78
-132.91
9
A
PHE
20
-144.20
41.17
9
A
TYR
21
-69.11
30.18
9
A
THR
22
74.22
125.23
10
A
THR
2
-84.20
-148.69
10
A
PRO
4
-72.68
-98.64
10
A
ASN
5
32.85
-105.31
10
A
ASN
6
51.35
-129.69
10
A
ASN
7
-92.90
-66.95
10
A
THR
8
51.44
-27.96
10
A
ARG
9
-67.48
74.92
10
A
SER
11
-84.78
38.94
10
A
HIS
13
-78.63
-105.81
10
A
PHE
20
-146.88
31.66
10
A
TYR
21
-42.00
-5.51
10
A
THR
22
80.99
134.30
10
A
GLU
25
-80.05
-74.27
11
A
ASN
5
45.58
-69.63
11
A
ASN
6
32.94
58.32
11
A
LYS
10
64.38
-158.86
11
A
SER
11
72.37
55.23
11
A
HIS
13
-64.56
-94.26
11
A
ILE
14
60.65
-131.90
11
A
TYR
21
36.25
0.49
11
A
THR
22
70.19
123.20
12
A
ASN
5
34.52
33.94
12
A
ASN
7
-143.80
-72.79
12
A
ARG
9
-122.34
-95.46
12
A
LYS
10
33.43
45.01
12
A
SER
11
-142.31
47.25
12
A
HIS
13
-57.19
-100.95
12
A
ILE
14
36.95
-131.58
12
A
TYR
21
-44.30
6.86
12
A
THR
22
83.26
121.87
13
A
ASN
5
-145.04
-82.63
13
A
ASN
6
-60.94
60.40
13
A
ASN
7
172.24
-41.97
13
A
LYS
10
34.83
37.87
13
A
SER
11
-168.23
58.75
13
A
HIS
13
-76.83
-95.93
13
A
ILE
14
54.60
-133.12
13
A
TYR
21
36.24
0.53
13
A
THR
22
70.42
124.31
14
A
THR
2
-51.90
-130.58
14
A
ARG
3
-105.22
45.90
14
A
ASN
5
-66.34
51.51
14
A
ASN
6
-33.87
-8.12
14
A
THR
8
41.42
76.11
14
A
ARG
9
-72.61
-88.81
14
A
LYS
10
34.47
32.35
14
A
SER
11
-177.17
59.54
14
A
ARG
18
81.06
-61.28
14
A
ALA
19
-76.30
27.60
14
A
PHE
20
-150.52
25.08
14
A
TYR
21
-35.62
-5.01
14
A
THR
22
75.52
123.91
14
A
ALA
33
-83.65
34.69
15
A
THR
2
-51.23
-120.46
15
A
ARG
3
-27.64
113.06
15
A
PRO
4
-34.99
-93.96
15
A
ASN
5
25.65
-98.17
15
A
ASN
6
29.96
-127.58
15
A
THR
8
38.44
2.22
15
A
LYS
10
-65.27
74.16
15
A
SER
11
171.01
-6.79
15
A
HIS
13
-71.12
-100.88
15
A
ILE
14
-79.76
43.82
15
A
THR
22
77.69
123.29
16
A
THR
2
-48.24
-132.83
16
A
ARG
3
-104.77
67.66
16
A
ASN
5
52.54
-53.51
16
A
ASN
6
-37.90
95.68
16
A
ASN
7
39.24
39.17
16
A
LYS
10
-105.22
49.61
16
A
SER
11
-179.03
57.05
16
A
HIS
13
-53.71
-92.45
16
A
ILE
14
43.73
-132.82
16
A
PHE
20
-156.74
63.80
16
A
TYR
21
-60.66
26.66
16
A
THR
22
72.54
122.27
17
A
ASN
5
-51.39
-79.06
17
A
ASN
6
43.18
-128.41
17
A
ASN
7
-67.25
-100.36
17
A
THR
8
31.83
-64.31
17
A
SER
11
67.04
64.14
17
A
HIS
13
-78.49
-92.51
17
A
ILE
14
65.76
-132.72
17
A
TYR
21
-53.12
0.86
17
A
THR
22
69.08
124.92
17
A
GLU
25
-77.78
-72.04
18
A
PRO
4
-59.72
-175.13
18
A
ASN
6
34.86
74.92
18
A
ARG
9
-38.13
-32.04
18
A
SER
11
67.33
75.05
18
A
HIS
13
-33.46
-39.63
18
A
ARG
18
79.72
-23.35
18
A
TYR
21
-56.78
-6.75
18
A
THR
22
76.03
122.91
18
A
GLU
25
-76.05
-70.38
19
A
PRO
4
-64.20
-78.16
19
A
ASN
5
33.50
-60.46
19
A
ASN
6
50.63
-6.44
19
A
THR
8
60.91
-24.31
19
A
ARG
9
-156.07
-131.22
19
A
SER
11
64.56
75.30
19
A
HIS
13
-66.00
-96.61
19
A
ILE
14
64.76
-131.96
19
A
PHE
20
-153.77
29.08
19
A
TYR
21
-80.78
44.61
19
A
THR
22
82.75
127.47
20
A
THR
2
-103.87
-169.20
20
A
PRO
4
-70.54
-158.74
20
A
ASN
5
61.36
-157.41
20
A
ASN
6
33.66
75.29
20
A
ASN
7
64.42
-9.57
20
A
THR
8
70.00
-10.48
20
A
ARG
9
51.81
-95.64
20
A
LYS
10
31.13
53.45
20
A
SER
11
-155.91
55.66
20
A
ILE
14
-149.82
-98.42
20
A
TYR
21
-59.01
-8.89
20
A
THR
22
71.42
123.21
20
A
HIS
34
-84.30
37.18
CONFORMATIONAL MODEL FOR THE CONSENSUS V3 LOOP OF THE ENVELOPE PROTEIN GP120 OF HIV-1
1
N
N
A
ASN
5
A
ASN
5
HELX_P
A
ASN
7
A
ASN
7
5
1
3
A
ARG
18
A
ARG
18
HELX_P
A
TYR
21
A
TYR
21
5
2
4
A
THR
23
A
THR
23
HELX_P
A
GLN
32
A
GLN
32
1
3
10
disulf
2.124
A
CYS
1
A
SG
CYS
1
1_555
A
CYS
35
A
SG
CYS
35
1_555
VIRAL PROTEIN
AMPHIPATHIC HELIX, HIV INFECTION, Viral protein
ENV_HV1JR
UNP
1
P20871
294
328
1CE4
1
35
P20871
A
1
1
35
1
SER
engineered mutation
ASN
5
1CE4
A
P20871
UNP
298
5
1
P 1