1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Banci, L.
Bertini, I.
Quacquarini, G.
Walter, O.
Diaz, A.
Hervas, M.
De La Rosa, M.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
GW
J.Biol.Inorg.Chem.
JJBCFA
2154
0949-8257
1
330
340
-1
The solution structure of cytochrome c6 from the green alga Monoraphidium braunii
1996
UK
Structure
STRUE6
2005
0969-2126
3
1159
Ab Initio Determination of the Crystal Structure of Cytochrome C6 and Comparison with Plastocyanin
1995
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
216
329
Cytochrome C6 from Monoraphidium Braunii. A Cytochrome with an Unusual Heme Axial Coordination
1993
10.2210/pdb1ced/pdb
pdb_00001ced
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
REDUCED
9359.270
CYTOCHROME C6
1
nat
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
1
syn
non-polymer
CYTOCHROME C552
no
no
EADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIENGKGAMPAWDGRLDEDEIAGVAAYV
YDQAAGNKW
EADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIENGKGAMPAWDGRLDEDEIAGVAAYV
YDQAAGNKW
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Monoraphidium
sample
34112
Monoraphidium braunii
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1996-08-17
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1996-03-06
REL
HEM
PROTOPORPHYRIN IX CONTAINING FE
20
PEARLMAN,CASE,CALDWELL,SIEBEL,SINGH, WEINER,KOLLMAN
refinement
Amber
4.0
HEM
90
2
HEM
HEM
90
A
GLU
1
n
1
GLU
1
A
ALA
2
n
2
ALA
2
A
ASP
3
n
3
ASP
3
A
LEU
4
n
4
LEU
4
A
ALA
5
n
5
ALA
5
A
LEU
6
n
6
LEU
6
A
GLY
7
n
7
GLY
7
A
LYS
8
n
8
LYS
8
A
ALA
9
n
9
ALA
9
A
VAL
10
n
10
VAL
10
A
PHE
11
n
11
PHE
11
A
ASP
12
n
12
ASP
12
A
GLY
13
n
13
GLY
13
A
ASN
14
n
14
ASN
14
A
CYS
15
n
15
CYS
15
A
ALA
16
n
16
ALA
16
A
ALA
17
n
17
ALA
17
A
CYS
18
n
18
CYS
18
A
HIS
19
n
19
HIS
19
A
ALA
20
n
20
ALA
20
A
GLY
21
n
21
GLY
21
A
GLY
22
n
22
GLY
22
A
GLY
23
n
23
GLY
23
A
ASN
24
n
24
ASN
24
A
ASN
25
n
25
ASN
25
A
VAL
26
n
26
VAL
26
A
ILE
27
n
27
ILE
27
A
PRO
28
n
28
PRO
28
A
ASP
29
n
29
ASP
29
A
HIS
30
n
30
HIS
30
A
THR
31
n
31
THR
31
A
LEU
32
n
32
LEU
32
A
GLN
33
n
33
GLN
33
A
LYS
34
n
34
LYS
34
A
ALA
35
n
35
ALA
35
A
ALA
36
n
36
ALA
36
A
ILE
37
n
37
ILE
37
A
GLU
38
n
38
GLU
38
A
GLN
39
n
39
GLN
39
A
PHE
40
n
40
PHE
40
A
LEU
41
n
41
LEU
41
A
ASP
42
n
42
ASP
42
A
GLY
43
n
43
GLY
43
A
GLY
44
n
44
GLY
44
A
PHE
45
n
45
PHE
45
A
ASN
46
n
46
ASN
46
A
ILE
47
n
47
ILE
47
A
GLU
48
n
48
GLU
48
A
ALA
49
n
49
ALA
49
A
ILE
50
n
50
ILE
50
A
VAL
51
n
51
VAL
51
A
TYR
52
n
52
TYR
52
A
GLN
53
n
53
GLN
53
A
ILE
54
n
54
ILE
54
A
GLU
55
n
55
GLU
55
A
ASN
56
n
56
ASN
56
A
GLY
57
n
57
GLY
57
A
LYS
58
n
58
LYS
58
A
GLY
59
n
59
GLY
59
A
ALA
60
n
60
ALA
60
A
MET
61
n
61
MET
61
A
PRO
62
n
62
PRO
62
A
ALA
63
n
63
ALA
63
A
TRP
64
n
64
TRP
64
A
ASP
65
n
65
ASP
65
A
GLY
66
n
66
GLY
66
A
ARG
67
n
67
ARG
67
A
LEU
68
n
68
LEU
68
A
ASP
69
n
69
ASP
69
A
GLU
70
n
70
GLU
70
A
ASP
71
n
71
ASP
71
A
GLU
72
n
72
GLU
72
A
ILE
73
n
73
ILE
73
A
ALA
74
n
74
ALA
74
A
GLY
75
n
75
GLY
75
A
VAL
76
n
76
VAL
76
A
ALA
77
n
77
ALA
77
A
ALA
78
n
78
ALA
78
A
TYR
79
n
79
TYR
79
A
VAL
80
n
80
VAL
80
A
TYR
81
n
81
TYR
81
A
ASP
82
n
82
ASP
82
A
GLN
83
n
83
GLN
83
A
ALA
84
n
84
ALA
84
A
ALA
85
n
85
ALA
85
A
GLY
86
n
86
GLY
86
A
ASN
87
n
87
ASN
87
A
LYS
88
n
88
LYS
88
A
TRP
89
n
89
TRP
89
A
author_defined_assembly
1
monomeric
A
HIS
19
A
NE2
HIS
19
1_555
A
HEM
90
B
FE
HEM
1_555
A
HEM
90
B
NA
HEM
1_555
95.6
A
HIS
19
A
NE2
HIS
19
1_555
A
HEM
90
B
FE
HEM
1_555
A
HEM
90
B
NB
HEM
1_555
91.6
A
HEM
90
B
NA
HEM
1_555
A
HEM
90
B
FE
HEM
1_555
A
HEM
90
B
NB
HEM
1_555
91.5
A
HIS
19
A
NE2
HIS
19
1_555
A
HEM
90
B
FE
HEM
1_555
A
HEM
90
B
NC
HEM
1_555
87.9
A
HEM
90
B
NA
HEM
1_555
A
HEM
90
B
FE
HEM
1_555
A
HEM
90
B
NC
HEM
1_555
176.0
A
HEM
90
B
NB
HEM
1_555
A
HEM
90
B
FE
HEM
1_555
A
HEM
90
B
NC
HEM
1_555
90.3
A
HIS
19
A
NE2
HIS
19
1_555
A
HEM
90
B
FE
HEM
1_555
A
HEM
90
B
ND
HEM
1_555
89.7
A
HEM
90
B
NA
HEM
1_555
A
HEM
90
B
FE
HEM
1_555
A
HEM
90
B
ND
HEM
1_555
89.5
A
HEM
90
B
NB
HEM
1_555
A
HEM
90
B
FE
HEM
1_555
A
HEM
90
B
ND
HEM
1_555
178.2
A
HEM
90
B
NC
HEM
1_555
A
HEM
90
B
FE
HEM
1_555
A
HEM
90
B
ND
HEM
1_555
88.6
A
HIS
19
A
NE2
HIS
19
1_555
A
HEM
90
B
FE
HEM
1_555
A
MET
61
A
SD
MET
61
1_555
170.1
A
HEM
90
B
NA
HEM
1_555
A
HEM
90
B
FE
HEM
1_555
A
MET
61
A
SD
MET
61
1_555
81.7
A
HEM
90
B
NB
HEM
1_555
A
HEM
90
B
FE
HEM
1_555
A
MET
61
A
SD
MET
61
1_555
98.0
A
HEM
90
B
NC
HEM
1_555
A
HEM
90
B
FE
HEM
1_555
A
MET
61
A
SD
MET
61
1_555
94.5
A
HEM
90
B
ND
HEM
1_555
A
HEM
90
B
FE
HEM
1_555
A
MET
61
A
SD
MET
61
1_555
80.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
6
A
CA
GLU
1
WRONG HAND
20
A
CA
GLU
1
WRONG HAND
1
A
A
LEU
ASP
41
42
147.75
4
A
A
GLY
ASN
86
87
-147.06
15
A
A
LEU
ASP
41
42
147.75
18
A
A
GLY
ASN
86
87
-147.06
1
A
ARG
67
0.174
SIDE CHAIN
2
A
TYR
79
0.074
SIDE CHAIN
4
A
ARG
67
0.177
SIDE CHAIN
5
A
TYR
79
0.067
SIDE CHAIN
5
A
TYR
81
0.064
SIDE CHAIN
6
A
PHE
45
0.095
SIDE CHAIN
6
A
ARG
67
0.182
SIDE CHAIN
6
A
TYR
79
0.093
SIDE CHAIN
7
A
ARG
67
0.178
SIDE CHAIN
9
A
TYR
52
0.113
SIDE CHAIN
9
A
ARG
67
0.208
SIDE CHAIN
10
A
TYR
79
0.075
SIDE CHAIN
13
A
ARG
67
0.189
SIDE CHAIN
13
A
TYR
79
0.078
SIDE CHAIN
14
A
ARG
67
0.194
SIDE CHAIN
15
A
ARG
67
0.174
SIDE CHAIN
16
A
TYR
79
0.074
SIDE CHAIN
18
A
ARG
67
0.177
SIDE CHAIN
19
A
TYR
52
0.063
SIDE CHAIN
19
A
TYR
79
0.065
SIDE CHAIN
20
A
TYR
79
0.071
SIDE CHAIN
2
8.43
1.40
123.60
132.03
A
A
A
CD
NE
CZ
ARG
ARG
ARG
67
67
67
N
16
8.43
1.40
123.60
132.03
A
A
A
CD
NE
CZ
ARG
ARG
ARG
67
67
67
N
1
A
ALA
20
3.98
-82.25
1
A
LEU
32
-77.79
35.58
1
A
LEU
41
-63.27
97.75
1
A
ASP
42
-7.24
-70.93
2
A
ALA
20
-39.83
125.90
2
A
LEU
32
-76.44
37.16
2
A
ASP
42
-29.64
-61.59
2
A
ASN
46
175.46
153.06
2
A
ASN
56
-108.74
60.47
2
A
ALA
63
63.74
159.27
2
A
LYS
88
-98.49
33.56
3
A
VAL
26
-104.48
-63.12
3
A
LEU
32
-79.08
44.16
3
A
GLU
55
-54.86
-74.32
3
A
ALA
60
36.09
38.70
4
A
ALA
20
44.61
-118.69
4
A
LEU
41
-58.50
105.27
4
A
ASP
42
-9.69
-70.59
4
A
GLU
55
-57.72
-70.72
4
A
LYS
58
-125.01
-151.40
4
A
ALA
60
38.82
38.88
4
A
ASN
87
29.46
71.92
5
A
ASN
24
-43.54
109.21
5
A
HIS
30
-84.31
41.96
5
A
LEU
32
-78.13
28.17
5
A
LEU
41
-69.92
88.63
5
A
ASP
42
-9.28
-68.37
6
A
ALA
2
-70.12
-137.77
6
A
ALA
20
-28.24
120.92
6
A
ASN
24
-47.05
101.55
6
A
HIS
30
-85.08
43.25
6
A
LEU
32
-77.90
28.82
6
A
ASP
42
-24.95
-68.10
6
A
ASN
87
24.88
54.31
7
A
ALA
20
6.49
-84.58
7
A
ASN
24
-52.25
92.78
7
A
LEU
32
-76.72
37.93
7
A
LYS
34
-29.04
-68.58
7
A
ALA
60
33.14
46.48
7
A
ASN
87
38.16
56.74
8
A
ALA
20
5.32
-82.86
8
A
ASN
24
-48.40
107.37
8
A
LEU
32
-79.19
44.83
8
A
ASP
42
-66.83
65.79
8
A
GLU
55
-56.41
-75.79
9
A
ASN
24
-40.33
105.35
9
A
GLU
55
-54.74
-74.53
9
A
ALA
63
70.30
141.29
9
A
LYS
88
-91.59
38.68
10
A
ASN
24
-43.07
103.52
10
A
HIS
30
-84.42
43.42
10
A
LEU
32
-75.60
41.05
11
A
ALA
2
-159.65
-157.16
11
A
ALA
20
8.51
-78.15
11
A
HIS
30
-78.41
40.37
11
A
LEU
32
-79.35
40.91
11
A
LEU
41
-52.28
107.29
11
A
ASP
42
-50.34
81.27
11
A
LYS
58
-129.71
-168.41
11
A
ALA
60
35.86
43.48
12
A
ALA
2
140.94
78.49
12
A
VAL
26
-102.55
-62.44
12
A
ASP
42
-64.76
70.71
12
A
ALA
60
38.21
38.81
12
A
ASN
87
33.21
52.13
12
A
LYS
88
-94.53
32.08
13
A
ALA
2
57.26
-162.59
13
A
ALA
20
-31.12
122.73
13
A
ASN
24
-52.80
104.62
13
A
VAL
26
-104.91
-61.44
13
A
ALA
60
36.11
38.83
13
A
ASN
87
25.06
68.74
14
A
ALA
2
48.31
-138.28
14
A
ALA
20
-31.87
120.66
14
A
ASN
24
-48.66
108.88
14
A
LEU
32
-76.08
34.25
14
A
GLU
55
-53.92
-71.64
14
A
ASN
56
-108.10
62.06
14
A
LYS
58
-106.04
-159.24
15
A
ALA
20
3.98
-82.25
15
A
LEU
32
-77.79
35.58
15
A
LEU
41
-63.27
97.75
15
A
ASP
42
-7.24
-70.93
16
A
ALA
20
-39.83
125.90
16
A
LEU
32
-76.44
37.16
16
A
ASP
42
-29.64
-61.59
16
A
ASN
46
175.46
153.06
16
A
ASN
56
-108.74
60.47
16
A
ALA
63
63.74
159.27
16
A
LYS
88
-98.49
33.56
17
A
VAL
26
-104.48
-63.12
17
A
LEU
32
-79.08
44.16
17
A
GLU
55
-54.86
-74.32
17
A
ALA
60
36.09
38.70
18
A
ALA
20
44.61
-118.69
18
A
LEU
41
-58.50
105.27
18
A
ASP
42
-9.69
-70.59
18
A
GLU
55
-57.72
-70.72
18
A
LYS
58
-125.01
-151.40
18
A
ALA
60
38.82
38.88
18
A
ASN
87
29.46
71.92
19
A
ALA
20
30.36
51.63
19
A
ASN
24
-43.36
105.07
19
A
HIS
30
-84.75
44.33
19
A
LEU
32
-75.72
33.89
19
A
ASP
42
-63.32
69.58
19
A
GLU
55
-56.34
-74.22
20
A
GLN
39
-105.53
-63.18
20
A
ASP
42
-65.12
72.80
20
A
PHE
45
-73.05
-108.15
20
A
ASN
46
53.17
-164.85
20
A
ASN
87
37.37
51.69
THE STRUCTURE OF CYTOCHROME C6 FROM MONORAPHIDIUM BRAUNII, NMR, MINIMIZED AVERAGE STRUCTURE
1
Y
N
2
N
N
A
LEU
4
A
LEU
4
HELX_P
A
ASN
14
A
ASN
14
1
1
11
A
ALA
16
A
ALA
16
HELX_P
A
HIS
19
A
HIS
19
1
2
4
A
LYS
34
A
LYS
34
HELX_P
A
PHE
40
A
PHE
40
1
3
7
A
ILE
47
A
ILE
47
HELX_P
A
ASN
56
A
ASN
56
1
4
10
A
GLU
70
A
GLU
70
HELX_P
A
GLY
86
A
GLY
86
1
5
17
covale
1.809
none
A
CYS
15
A
SG
CYS
15
1_555
A
HEM
90
B
CAB
HEM
1_555
covale
1.820
none
A
CYS
18
A
SG
CYS
18
1_555
A
HEM
90
B
CAC
HEM
1_555
metalc
1.950
A
HIS
19
A
NE2
HIS
19
1_555
A
HEM
90
B
FE
HEM
1_555
metalc
2.368
A
MET
61
A
SD
MET
61
1_555
A
HEM
90
B
FE
HEM
1_555
ELECTRON TRANSPORT (HEME PROTEIN)
ELECTRON TRANSPORT, HEME PROTEIN, CHLOROPLAST, THYLAKOID MEMBRANE, ELECTRON TRANSPORT (HEME PROTEIN)
CYC6_MONBR
UNP
1
1
Q09099
EADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIENGKGAMPAWDGRLDEDEIAGVAAYV
YDQAAGNKW
1
89
1CED
1
89
Q09099
A
1
1
89
BINDING SITE FOR RESIDUE HEM A 90
A
HEM
90
Software
17
A
CYS
15
A
CYS
15
17
1_555
A
CYS
18
A
CYS
18
17
1_555
A
HIS
19
A
HIS
19
17
1_555
A
ASN
24
A
ASN
24
17
1_555
A
HIS
30
A
HIS
30
17
1_555
A
THR
31
A
THR
31
17
1_555
A
LEU
32
A
LEU
32
17
1_555
A
ALA
36
A
ALA
36
17
1_555
A
ILE
37
A
ILE
37
17
1_555
A
LEU
41
A
LEU
41
17
1_555
A
ILE
50
A
ILE
50
17
1_555
A
GLN
53
A
GLN
53
17
1_555
A
ILE
54
A
ILE
54
17
1_555
A
LYS
58
A
LYS
58
17
1_555
A
MET
61
A
MET
61
17
1_555
A
PRO
62
A
PRO
62
17
1_555
A
TRP
64
A
TRP
64
17
1_555
1
P 1