0.009872
0.000000
0.004436
0.000000
0.014225
0.000000
0.000000
0.000000
0.015752
0.00000
0.00000
0.00000
Paschall, C.M.
Hasserodt, J.
Jones, T.
Lerner, R.A.
Janda, K.D.
Christianson, D.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
114.20
90.00
101.300
70.300
69.600
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C24 H33 N3 O6
459.535
4-{4-[2-(1A,7A-DIMETHYL-4-OXY-OCTAHYDRO-1-OXA-4-AZA-CYCLOPROPA[A]NAPHTHALEN-4-YL) -ACETYLAMINO]-PHENYLCARBAMOYL}-BUTYRIC ACID
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CD
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
C
N
145
N
O
N
146
N
N
Y
147
N
C
Y
148
N
C
Y
149
N
C
Y
150
N
C
Y
151
N
C
Y
152
N
C
N
153
N
N
N
154
N
C
N
155
N
O
N
156
N
C
N
157
S
C
N
158
N
C
N
159
N
C
N
160
N
C
N
161
N
C
N
162
N
O
N
163
N
C
N
164
S
N
N
165
R
C
N
166
N
C
N
167
N
C
N
168
R
C
N
169
S
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
N
C
Y
209
N
C
Y
210
N
N
Y
211
N
C
Y
212
N
C
Y
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
S
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
N
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
N
302
N
C
N
303
N
S
N
304
N
C
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
C
N
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
N
362
N
O
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
R
C
N
376
N
O
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
N
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
N
N
416
S
C
N
417
N
C
N
418
N
O
N
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
N
426
N
O
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
N
N
440
S
C
N
441
N
C
N
442
N
O
N
443
N
C
N
444
N
C
N
445
N
C
N
446
N
O
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
Y
146
N
doub
Y
147
N
sing
N
148
N
sing
Y
149
N
sing
N
150
N
sing
Y
151
N
doub
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
Y
209
N
sing
Y
210
N
doub
Y
211
N
doub
N
212
N
sing
Y
213
N
sing
N
214
N
sing
Y
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
Y
414
N
doub
Y
415
N
sing
Y
416
N
sing
N
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
doub
N
421
N
sing
Y
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
GE
Angew.Chem.Int.Ed.Engl.
9999
1433-7851
38
1743
1747
10.1002/(SICI)1521-3773(19990614)38:12<1743::AID-ANIE1743>3.0.CO;2-3
-1
Convergence of Catalytic Antibody and Terpene Cyclase Mechanisms: Polyene Cyclization Directed by Carbocation-pi Interactions
1999
10.2210/pdb1cf8/pdb
pdb_00001cf8
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
300.00
1
MIRRORS
IMAGE PLATE
1998-05-17
RIGAKU
NI FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
23484.854
PROTEIN (CATALYTIC ANTIBODY 19A4 (LIGHT CHAIN))
FAB, VARIABLE REGION
1
nat
polymer
23500.123
PROTEIN (CATALYTIC ANTIBODY 19A4 (HEAVY CHAIN))
FAB, VARIABLE REGION
1
nat
polymer
112.411
CADMIUM ION
2
syn
non-polymer
459.535
4-{4-[2-(1A,7A-DIMETHYL-4-OXY-OCTAHYDRO-1-OXA-4-AZA-CYCLOPROPA[A]NAPHTHALEN-4-YL) -ACETYLAMINO]-PHENYLCARBAMOYL}-BUTYRIC ACID
1
syn
non-polymer
18.015
water
11
nat
water
no
no
DIVLTQSPTIMSVSPGEKVTLTCSASSSVSSNYVYWYQQKPGSSPKVWIYSTSNLASGVPARFSGSGSGTSYSLTISSME
AEDAASYFCLQWSSFPYTFGGGTKLELKRADVAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV
LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
DIVLTQSPTIMSVSPGEKVTLTCSASSSVSSNYVYWYQQKPGSSPKVWIYSTSNLASGVPARFSGSGSGTSYSLTISSME
AEDAASYFCLQWSSFPYTFGGGTKLELKRADVAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV
LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
L
polypeptide(L)
no
no
DVQLQESGPGLVKPSQSLSLTCTVTGYSITSGYAWNWIRQFPGNKLEWMGYIRYSGDTRYNPSLKSRISITRDTSKNQFF
LQLNSVTTEDTATYYCAIGYGNSDYWGQGTLVTVSAAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSG
SLSSSVHAFPALLQSDLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEPKDC
DVQLQESGPGLVKPSQSLSLTCTVTGYSITSGYAWNWIRQFPGNKLEWMGYIRYSGDTRYNPSLKSRISITRDTSKNQFF
LQLNSVTTEDTATYYCAIGYGNSDYWGQGTLVTVSAAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSG
SLSSSVHAFPALLQSDLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEPKDC
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
129G1X+(MOUSE)/P3X63AG8.653 (MYELOMA)
10090
Mus musculus
129G1X+/BOY
house mouse
Mus
sample
129G1X+(MOUSE)/P3X63AG8.653 (MYELOMA)
10090
Mus musculus
129G1X+/BOY
2
2.75
47.8000
USED MODEL OF SEQUENCE WITH ONLY VARYING RESIDUES CHANGED TO ALANINE.
7.00
DROP: 11.4 MG/ML FAB, 10MM CDCL2, 50 MM TRIS, PH 7.0, RESERVOIR: 30% PEG 6000,
100 MM HEPES PH 7.9, pH 7.00
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
1999-07-28
1
1
2007-10-16
1
2
2011-07-13
1
3
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
SEQUENCE
The proper sequence database reference not availabe
due to fragments of variable region
BNL
Y
RCSB
1999-03-24
REL
CD
CADMIUM ION
HAZ
4-{4-[2-(1A,7A-DIMETHYL-4-OXY-OCTAHYDRO-1-OXA-4-AZA-CYCLOPROPA[A]NAPHTHALEN-4-YL) -ACETYLAMINO]-PHENYLCARBAMOYL}-BUTYRIC ACID
HOH
water
THIS PROTEIN IS A FAB FRAGMENT PRODUCED UPON THE DIGESTION
OF FULL-LENGTH MURINE MONOCLONAL ANTIBODY BY PAPAIN.
1YEF
PDB ENTRY 1YEF
PDB
experimental model
CD
1001
3
CD
CD
1001
L
CD
1000
3
CD
CD
1000
H
HAZ
800
4
HAZ
HAZ
800
H
HOH
1104
5
HOH
HOH
1104
L
HOH
1105
5
HOH
HOH
1105
L
HOH
1108
5
HOH
HOH
1108
L
HOH
1110
5
HOH
HOH
1110
L
HOH
1101
5
HOH
HOH
1101
H
HOH
1102
5
HOH
HOH
1102
H
HOH
1103
5
HOH
HOH
1103
H
HOH
1106
5
HOH
HOH
1106
H
HOH
1107
5
HOH
HOH
1107
H
HOH
1109
5
HOH
HOH
1109
H
HOH
1111
5
HOH
HOH
1111
H
ASP
1
n
1
ASP
1
L
ILE
2
n
2
ILE
2
L
VAL
3
n
3
VAL
3
L
LEU
4
n
4
LEU
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
THR
9
n
9
THR
9
L
ILE
10
n
10
ILE
10
L
MET
11
n
11
MET
11
L
SER
12
n
12
SER
12
L
VAL
13
n
13
VAL
13
L
SER
14
n
14
SER
14
L
PRO
15
n
15
PRO
15
L
GLY
16
n
16
GLY
16
L
GLU
17
n
17
GLU
17
L
LYS
18
n
18
LYS
18
L
VAL
19
n
19
VAL
19
L
THR
20
n
20
THR
20
L
LEU
21
n
21
LEU
21
L
THR
22
n
22
THR
22
L
CYS
23
n
23
CYS
23
L
SER
24
n
24
SER
24
L
ALA
25
n
25
ALA
25
L
SER
26
n
26
SER
26
L
SER
27
n
27
SER
27
L
SER
27
n
28
A
SER
27
L
VAL
28
n
29
VAL
28
L
SER
29
n
30
SER
29
L
SER
30
n
31
SER
30
L
ASN
31
n
32
ASN
31
L
TYR
32
n
33
TYR
32
L
VAL
33
n
34
VAL
33
L
TYR
34
n
35
TYR
34
L
TRP
35
n
36
TRP
35
L
TYR
36
n
37
TYR
36
L
GLN
37
n
38
GLN
37
L
GLN
38
n
39
GLN
38
L
LYS
39
n
40
LYS
39
L
PRO
40
n
41
PRO
40
L
GLY
41
n
42
GLY
41
L
SER
42
n
43
SER
42
L
SER
43
n
44
SER
43
L
PRO
44
n
45
PRO
44
L
LYS
45
n
46
LYS
45
L
VAL
46
n
47
VAL
46
L
TRP
47
n
48
TRP
47
L
ILE
48
n
49
ILE
48
L
TYR
49
n
50
TYR
49
L
SER
50
n
51
SER
50
L
THR
51
n
52
THR
51
L
SER
52
n
53
SER
52
L
ASN
53
n
54
ASN
53
L
LEU
54
n
55
LEU
54
L
ALA
55
n
56
ALA
55
L
SER
56
n
57
SER
56
L
GLY
57
n
58
GLY
57
L
VAL
58
n
59
VAL
58
L
PRO
59
n
60
PRO
59
L
ALA
60
n
61
ALA
60
L
ARG
61
n
62
ARG
61
L
PHE
62
n
63
PHE
62
L
SER
63
n
64
SER
63
L
GLY
64
n
65
GLY
64
L
SER
65
n
66
SER
65
L
GLY
66
n
67
GLY
66
L
SER
67
n
68
SER
67
L
GLY
68
n
69
GLY
68
L
THR
69
n
70
THR
69
L
SER
70
n
71
SER
70
L
TYR
71
n
72
TYR
71
L
SER
72
n
73
SER
72
L
LEU
73
n
74
LEU
73
L
THR
74
n
75
THR
74
L
ILE
75
n
76
ILE
75
L
SER
76
n
77
SER
76
L
SER
77
n
78
SER
77
L
MET
78
n
79
MET
78
L
GLU
79
n
80
GLU
79
L
ALA
80
n
81
ALA
80
L
GLU
81
n
82
GLU
81
L
ASP
82
n
83
ASP
82
L
ALA
83
n
84
ALA
83
L
ALA
84
n
85
ALA
84
L
SER
85
n
86
SER
85
L
TYR
86
n
87
TYR
86
L
PHE
87
n
88
PHE
87
L
CYS
88
n
89
CYS
88
L
LEU
89
n
90
LEU
89
L
GLN
90
n
91
GLN
90
L
TRP
91
n
92
TRP
91
L
SER
92
n
93
SER
92
L
SER
93
n
94
SER
93
L
PHE
94
n
95
PHE
94
L
PRO
95
n
96
PRO
95
L
TYR
96
n
97
TYR
96
L
THR
97
n
98
THR
97
L
PHE
98
n
99
PHE
98
L
GLY
99
n
100
GLY
99
L
GLY
100
n
101
GLY
100
L
GLY
101
n
102
GLY
101
L
THR
102
n
103
THR
102
L
LYS
103
n
104
LYS
103
L
LEU
104
n
105
LEU
104
L
GLU
105
n
106
GLU
105
L
LEU
106
n
107
LEU
106
L
LYS
107
n
108
LYS
107
L
ARG
108
n
109
ARG
108
L
ALA
109
n
110
ALA
109
L
ASP
110
n
111
ASP
110
L
VAL
111
n
112
VAL
111
L
ALA
112
n
113
ALA
112
L
PRO
113
n
114
PRO
113
L
THR
114
n
115
THR
114
L
VAL
115
n
116
VAL
115
L
SER
116
n
117
SER
116
L
ILE
117
n
118
ILE
117
L
PHE
118
n
119
PHE
118
L
PRO
119
n
120
PRO
119
L
PRO
120
n
121
PRO
120
L
SER
121
n
122
SER
121
L
SER
122
n
123
SER
122
L
GLU
123
n
124
GLU
123
L
GLN
124
n
125
GLN
124
L
LEU
125
n
126
LEU
125
L
THR
126
n
127
THR
126
L
SER
127
n
128
SER
127
L
GLY
128
n
129
GLY
128
L
GLY
129
n
130
GLY
129
L
ALA
130
n
131
ALA
130
L
SER
131
n
132
SER
131
L
VAL
132
n
133
VAL
132
L
VAL
133
n
134
VAL
133
L
CYS
134
n
135
CYS
134
L
PHE
135
n
136
PHE
135
L
LEU
136
n
137
LEU
136
L
ASN
137
n
138
ASN
137
L
ASN
138
n
139
ASN
138
L
PHE
139
n
140
PHE
139
L
TYR
140
n
141
TYR
140
L
PRO
141
n
142
PRO
141
L
LYS
142
n
143
LYS
142
L
ASP
143
n
144
ASP
143
L
ILE
144
n
145
ILE
144
L
ASN
145
n
146
ASN
145
L
VAL
146
n
147
VAL
146
L
LYS
147
n
148
LYS
147
L
TRP
148
n
149
TRP
148
L
LYS
149
n
150
LYS
149
L
ILE
150
n
151
ILE
150
L
ASP
151
n
152
ASP
151
L
GLY
152
n
153
GLY
152
L
SER
153
n
154
SER
153
L
GLU
154
n
155
GLU
154
L
ARG
155
n
156
ARG
155
L
GLN
156
n
157
GLN
156
L
ASN
157
n
158
ASN
157
L
GLY
158
n
159
GLY
158
L
VAL
159
n
160
VAL
159
L
LEU
160
n
161
LEU
160
L
ASN
161
n
162
ASN
161
L
SER
162
n
163
SER
162
L
TRP
163
n
164
TRP
163
L
THR
164
n
165
THR
164
L
ASP
165
n
166
ASP
165
L
GLN
166
n
167
GLN
166
L
ASP
167
n
168
ASP
167
L
SER
168
n
169
SER
168
L
LYS
169
n
170
LYS
169
L
ASP
170
n
171
ASP
170
L
SER
171
n
172
SER
171
L
THR
172
n
173
THR
172
L
TYR
173
n
174
TYR
173
L
SER
174
n
175
SER
174
L
MET
175
n
176
MET
175
L
SER
176
n
177
SER
176
L
SER
177
n
178
SER
177
L
THR
178
n
179
THR
178
L
LEU
179
n
180
LEU
179
L
THR
180
n
181
THR
180
L
LEU
181
n
182
LEU
181
L
THR
182
n
183
THR
182
L
LYS
183
n
184
LYS
183
L
ASP
184
n
185
ASP
184
L
GLU
185
n
186
GLU
185
L
TYR
186
n
187
TYR
186
L
GLU
187
n
188
GLU
187
L
ARG
188
n
189
ARG
188
L
HIS
189
n
190
HIS
189
L
ASN
190
n
191
ASN
190
L
SER
191
n
192
SER
191
L
TYR
192
n
193
TYR
192
L
THR
193
n
194
THR
193
L
CYS
194
n
195
CYS
194
L
GLU
195
n
196
GLU
195
L
ALA
196
n
197
ALA
196
L
THR
197
n
198
THR
197
L
HIS
198
n
199
HIS
198
L
LYS
199
n
200
LYS
199
L
THR
200
n
201
THR
200
L
SER
201
n
202
SER
201
L
THR
202
n
203
THR
202
L
SER
203
n
204
SER
203
L
PRO
204
n
205
PRO
204
L
ILE
205
n
206
ILE
205
L
VAL
206
n
207
VAL
206
L
LYS
207
n
208
LYS
207
L
SER
208
n
209
SER
208
L
PHE
209
n
210
PHE
209
L
ASN
210
n
211
ASN
210
L
ARG
211
n
212
ARG
211
L
ASN
212
n
213
ASN
212
L
GLU
213
n
214
GLU
213
L
CYS
214
n
215
CYS
214
L
ASP
1
n
1
ASP
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLU
6
n
6
GLU
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
PRO
9
n
9
PRO
9
H
GLY
10
n
10
GLY
10
H
LEU
11
n
11
LEU
11
H
VAL
12
n
12
VAL
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
SER
15
n
15
SER
15
H
GLN
16
n
16
GLN
16
H
SER
17
n
17
SER
17
H
LEU
18
n
18
LEU
18
H
SER
19
n
19
SER
19
H
LEU
20
n
20
LEU
20
H
THR
21
n
21
THR
21
H
CYS
22
n
22
CYS
22
H
THR
23
n
23
THR
23
H
VAL
24
n
24
VAL
24
H
THR
25
n
25
THR
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
SER
28
n
28
SER
28
H
ILE
29
n
29
ILE
29
H
THR
30
n
30
THR
30
H
SER
31
n
31
SER
31
H
GLY
32
n
32
GLY
32
H
TYR
33
n
33
TYR
33
H
ALA
34
n
34
ALA
34
H
TRP
35
n
35
TRP
35
H
ASN
35
n
36
A
ASN
35
H
TRP
36
n
37
TRP
36
H
ILE
37
n
38
ILE
37
H
ARG
38
n
39
ARG
38
H
GLN
39
n
40
GLN
39
H
PHE
40
n
41
PHE
40
H
PRO
41
n
42
PRO
41
H
GLY
42
n
43
GLY
42
H
ASN
43
n
44
ASN
43
H
LYS
44
n
45
LYS
44
H
LEU
45
n
46
LEU
45
H
GLU
46
n
47
GLU
46
H
TRP
47
n
48
TRP
47
H
MET
48
n
49
MET
48
H
GLY
49
n
50
GLY
49
H
TYR
50
n
51
TYR
50
H
ILE
51
n
52
ILE
51
H
ARG
52
n
53
ARG
52
H
TYR
53
n
54
TYR
53
H
SER
54
n
55
SER
54
H
GLY
55
n
56
GLY
55
H
ASP
56
n
57
ASP
56
H
THR
57
n
58
THR
57
H
ARG
58
n
59
ARG
58
H
TYR
59
n
60
TYR
59
H
ASN
60
n
61
ASN
60
H
PRO
61
n
62
PRO
61
H
SER
62
n
63
SER
62
H
LEU
63
n
64
LEU
63
H
LYS
64
n
65
LYS
64
H
SER
65
n
66
SER
65
H
ARG
66
n
67
ARG
66
H
ILE
67
n
68
ILE
67
H
SER
68
n
69
SER
68
H
ILE
69
n
70
ILE
69
H
THR
70
n
71
THR
70
H
ARG
71
n
72
ARG
71
H
ASP
72
n
73
ASP
72
H
THR
73
n
74
THR
73
H
SER
74
n
75
SER
74
H
LYS
75
n
76
LYS
75
H
ASN
76
n
77
ASN
76
H
GLN
77
n
78
GLN
77
H
PHE
78
n
79
PHE
78
H
PHE
79
n
80
PHE
79
H
LEU
80
n
81
LEU
80
H
GLN
81
n
82
GLN
81
H
LEU
82
n
83
LEU
82
H
ASN
82
n
84
A
ASN
82
H
SER
82
n
85
B
SER
82
H
VAL
82
n
86
C
VAL
82
H
THR
83
n
87
THR
83
H
THR
84
n
88
THR
84
H
GLU
85
n
89
GLU
85
H
ASP
86
n
90
ASP
86
H
THR
87
n
91
THR
87
H
ALA
88
n
92
ALA
88
H
THR
89
n
93
THR
89
H
TYR
90
n
94
TYR
90
H
TYR
91
n
95
TYR
91
H
CYS
92
n
96
CYS
92
H
ALA
93
n
97
ALA
93
H
ILE
94
n
98
ILE
94
H
GLY
95
n
99
GLY
95
H
TYR
96
n
100
TYR
96
H
GLY
97
n
101
GLY
97
H
ASN
98
n
102
ASN
98
H
SER
99
n
103
SER
99
H
ASP
101
n
104
ASP
101
H
TYR
102
n
105
TYR
102
H
TRP
103
n
106
TRP
103
H
GLY
104
n
107
GLY
104
H
GLN
105
n
108
GLN
105
H
GLY
106
n
109
GLY
106
H
THR
107
n
110
THR
107
H
LEU
108
n
111
LEU
108
H
VAL
109
n
112
VAL
109
H
THR
110
n
113
THR
110
H
VAL
111
n
114
VAL
111
H
SER
112
n
115
SER
112
H
ALA
113
n
116
ALA
113
H
ALA
114
n
117
ALA
114
H
LYS
115
n
118
LYS
115
H
THR
116
n
119
THR
116
H
THR
117
n
120
THR
117
H
PRO
118
n
121
PRO
118
H
PRO
119
n
122
PRO
119
H
SER
120
n
123
SER
120
H
VAL
121
n
124
VAL
121
H
TYR
122
n
125
TYR
122
H
PRO
123
n
126
PRO
123
H
LEU
124
n
127
LEU
124
H
ALA
125
n
128
ALA
125
H
PRO
126
n
129
PRO
126
H
GLY
127
n
130
GLY
127
H
CYS
128
n
131
CYS
128
H
GLY
129
n
132
GLY
129
H
ASP
130
n
133
ASP
130
H
THR
131
n
134
THR
131
H
THR
132
n
135
THR
132
H
GLY
133
n
136
GLY
133
H
SER
134
n
137
SER
134
H
SER
135
n
138
SER
135
H
VAL
136
n
139
VAL
136
H
THR
137
n
140
THR
137
H
LEU
138
n
141
LEU
138
H
GLY
139
n
142
GLY
139
H
CYS
140
n
143
CYS
140
H
LEU
141
n
144
LEU
141
H
VAL
142
n
145
VAL
142
H
LYS
143
n
146
LYS
143
H
GLY
144
n
147
GLY
144
H
TYR
145
n
148
TYR
145
H
PHE
146
n
149
PHE
146
H
PRO
147
n
150
PRO
147
H
GLU
148
n
151
GLU
148
H
SER
149
n
152
SER
149
H
VAL
150
n
153
VAL
150
H
THR
151
n
154
THR
151
H
VAL
152
n
155
VAL
152
H
THR
153
n
156
THR
153
H
TRP
154
n
157
TRP
154
H
ASN
155
n
158
ASN
155
H
SER
156
n
159
SER
156
H
GLY
157
n
160
GLY
157
H
SER
158
n
161
SER
158
H
LEU
159
n
162
LEU
159
H
SER
160
n
163
SER
160
H
SER
161
n
164
SER
161
H
SER
162
n
165
SER
162
H
VAL
163
n
166
VAL
163
H
HIS
164
n
167
HIS
164
H
ALA
165
n
168
ALA
165
H
PHE
166
n
169
PHE
166
H
PRO
167
n
170
PRO
167
H
ALA
168
n
171
ALA
168
H
LEU
169
n
172
LEU
169
H
LEU
170
n
173
LEU
170
H
GLN
171
n
174
GLN
171
H
SER
172
n
175
SER
172
H
ASP
173
n
176
ASP
173
H
LEU
174
n
177
LEU
174
H
TYR
175
n
178
TYR
175
H
THR
176
n
179
THR
176
H
MET
177
n
180
MET
177
H
SER
178
n
181
SER
178
H
SER
179
n
182
SER
179
H
SER
180
n
183
SER
180
H
VAL
181
n
184
VAL
181
H
THR
182
n
185
THR
182
H
VAL
183
n
186
VAL
183
H
PRO
184
n
187
PRO
184
H
SER
185
n
188
SER
185
H
SER
186
n
189
SER
186
H
THR
187
n
190
THR
187
H
TRP
188
n
191
TRP
188
H
PRO
189
n
192
PRO
189
H
SER
190
n
193
SER
190
H
GLN
191
n
194
GLN
191
H
THR
192
n
195
THR
192
H
VAL
193
n
196
VAL
193
H
THR
194
n
197
THR
194
H
CYS
195
n
198
CYS
195
H
SER
196
n
199
SER
196
H
VAL
197
n
200
VAL
197
H
ALA
198
n
201
ALA
198
H
HIS
199
n
202
HIS
199
H
PRO
200
n
203
PRO
200
H
ALA
201
n
204
ALA
201
H
SER
202
n
205
SER
202
H
SER
203
n
206
SER
203
H
THR
204
n
207
THR
204
H
THR
205
n
208
THR
205
H
VAL
206
n
209
VAL
206
H
ASP
207
n
210
ASP
207
H
LYS
208
n
211
LYS
208
H
LYS
209
n
212
LYS
209
H
LEU
210
n
213
LEU
210
H
GLU
211
n
214
GLU
211
H
PRO
212
n
215
PRO
212
H
LYS
213
n
216
LYS
213
H
ASP
214
n
217
ASP
214
H
CYS
215
n
218
CYS
215
H
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PQS
4
tetrameric
4020
-39
19600
L
GLU
81
A
OE2
GLU
82
4_556
H
CD
1000
D
CD
CD
1_555
H
ASP
173
B
OD2
ASP
176
1_555
79.0
L
GLU
81
A
OE2
GLU
82
4_556
H
CD
1000
D
CD
CD
1_555
H
ASP
173
B
OD1
ASP
176
1_555
108.3
H
ASP
173
B
OD2
ASP
176
1_555
H
CD
1000
D
CD
CD
1_555
H
ASP
173
B
OD1
ASP
176
1_555
48.7
L
GLU
187
A
OE1
GLU
188
1_555
L
CD
1001
C
CD
CD
1_555
L
GLU
213
A
OE2
GLU
214
1_555
111.6
L
GLU
187
A
OE1
GLU
188
1_555
L
CD
1001
C
CD
CD
1_555
L
GLU
213
A
OE1
GLU
214
1_555
129.5
L
GLU
213
A
OE2
GLU
214
1_555
L
CD
1001
C
CD
CD
1_555
L
GLU
213
A
OE1
GLU
214
1_555
50.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_556
-x,y,-z+1
crystal symmetry operation
-28.5306431554
0.0000000000
63.4835600856
L
O
THR
5
A
O
THR
5
L
N
SER
24
A
N
SER
24
L
O
VAL
19
A
O
VAL
19
L
N
ILE
75
A
N
ILE
76
L
O
SER
70
A
O
SER
71
L
N
SER
67
A
N
SER
68
L
O
MET
11
A
O
MET
11
L
N
LYS
103
A
N
LYS
104
L
O
SER
85
A
O
SER
86
L
N
GLN
38
A
N
GLN
39
L
O
TRP
35
A
O
TRP
36
L
N
ILE
48
A
N
ILE
49
L
O
THR
114
A
O
THR
115
L
N
ASN
137
A
N
ASN
138
L
O
ALA
130
A
O
ALA
131
L
N
LEU
181
A
N
LEU
182
L
O
SER
176
A
O
SER
177
L
N
SER
162
A
N
SER
163
L
O
ASN
145
A
O
ASN
146
L
N
THR
197
A
N
THR
198
L
O
TYR
192
A
O
TYR
193
L
N
PHE
209
A
N
PHE
210
H
O
GLN
3
B
O
GLN
3
H
N
THR
25
B
N
THR
25
H
O
LEU
18
B
O
LEU
18
H
N
LEU
82
B
N
LEU
83
H
O
GLN
77
B
O
GLN
78
H
N
ASP
72
B
N
ASP
73
H
O
THR
107
B
O
THR
110
H
N
TYR
90
B
N
TYR
94
H
O
THR
89
B
O
THR
93
H
N
GLN
39
B
N
GLN
40
H
O
TRP
35
B
O
TRP
35
H
N
ILE
51
B
N
ILE
52
H
O
TYR
50
B
O
TYR
51
H
N
ARG
58
B
N
ARG
59
H
O
ILE
94
B
O
ILE
98
H
N
TYR
102
B
N
TYR
105
H
O
SER
120
B
O
SER
123
H
N
LYS
143
B
N
LYS
146
H
O
VAL
136
B
O
VAL
139
H
N
VAL
183
B
N
VAL
186
H
O
SER
178
B
O
SER
181
H
N
PHE
166
B
N
PHE
169
H
O
THR
151
B
O
THR
154
H
N
ALA
198
B
N
ALA
201
H
O
CYS
195
B
O
CYS
198
H
N
LYS
208
B
N
LYS
211
1
H
C8
HAZ
800
PLANAR
1
L
THR
51
69.22
-51.22
1
L
SER
67
174.10
153.32
1
L
ALA
84
-174.67
-174.31
1
L
SER
176
-160.67
111.53
1
L
THR
200
-68.19
-108.75
1
L
GLU
213
65.80
-24.37
1
H
VAL
2
46.20
90.12
1
H
TYR
27
-172.41
128.61
1
H
TYR
33
68.33
156.83
1
H
ASN
43
85.34
1.29
1
H
LYS
64
-21.69
-105.86
B
1
H
SER
82
33.72
58.70
1
H
THR
131
70.48
-48.68
1
H
THR
132
69.62
87.94
1
H
PHE
146
-176.71
143.65
1
H
SER
149
110.44
85.68
1
H
SER
172
73.12
47.06
1
H
PRO
189
-97.55
33.90
1
H
ASP
214
-101.68
-133.41
PARHCSDX.PRO
TOPHCSDX.PRO
PARHAP.PRO
TOPHAP.PRO
25.6
0.257
0.165
2.700
20.000
597
10933
5.000
93.500
RANDOM
100000.000
0.1000
1
RESTRAINED
THROUGHOUT
2.000
MOLECULAR REPLACEMENT
PDB ENTRY 1YEF
2.700
20.000
11
3348
35
0
3302
0.011
1.70
27.5
1.47
0.299
0.232
2.82
73
1039
8
5.00
80.62
39.10
2.700
20.000
1CF8
11531
2.000
0.088
1
19.3100
3.240
93.500
0.173
2.700
2.800
6.700
1
2.400
80.20
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
X-PLOR
3.1
Convergence of catalytic antibody and terpene cyclase mechanisms: polyene cyclization directed by carbocation-pi interactions
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
L
SER
30
A
SER
31
HELX_P
L
TYR
32
A
TYR
33
5
1
3
L
ALA
80
A
ALA
81
HELX_P
L
ASP
82
A
ASP
83
5
2
3
L
SER
122
A
SER
123
HELX_P
L
SER
127
A
SER
128
1
3
6
L
LYS
183
A
LYS
184
HELX_P
L
TYR
186
A
TYR
187
1
4
4
H
THR
84
B
THR
88
HELX_P
H
ASP
86
B
ASP
90
5
5
3
H
ASN
155
B
ASN
158
HELX_P
H
GLY
157
B
GLY
160
5
6
3
H
PRO
200
B
PRO
203
HELX_P
H
SER
202
B
SER
205
5
7
3
disulf
2.038
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
88
A
SG
CYS
89
1_555
disulf
2.021
L
CYS
134
A
SG
CYS
135
1_555
L
CYS
194
A
SG
CYS
195
1_555
disulf
2.036
L
CYS
214
A
SG
CYS
215
1_555
H
CYS
128
B
SG
CYS
131
1_555
disulf
2.026
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
92
B
SG
CYS
96
1_555
disulf
2.034
H
CYS
140
B
SG
CYS
143
1_555
H
CYS
195
B
SG
CYS
198
1_555
metalc
2.166
L
GLU
81
A
OE2
GLU
82
4_556
H
CD
1000
D
CD
CD
1_555
metalc
2.140
L
GLU
187
A
OE1
GLU
188
1_555
L
CD
1001
C
CD
CD
1_555
metalc
2.460
L
GLU
213
A
OE2
GLU
214
1_555
L
CD
1001
C
CD
CD
1_555
metalc
2.651
L
GLU
213
A
OE1
GLU
214
1_555
L
CD
1001
C
CD
CD
1_555
metalc
2.611
H
ASP
173
B
OD2
ASP
176
1_555
H
CD
1000
D
CD
CD
1_555
metalc
2.706
H
ASP
173
B
OD1
ASP
176
1_555
H
CD
1000
D
CD
CD
1_555
CATALYTIC ANTIBODY
CATALYTIC ANTIBODY, TERPENOID SYNTHASE, CARBOCATION, CYCLIZATION CASCADE
L
SER
7
A
SER
7
1
L
PRO
8
A
PRO
8
-0.38
L
PHE
94
A
PHE
95
1
L
PRO
95
A
PRO
96
0.07
L
TYR
140
A
TYR
141
1
L
PRO
141
A
PRO
142
0.22
H
PHE
146
B
PHE
149
1
H
PRO
147
B
PRO
150
-0.27
H
TRP
188
B
TRP
191
1
H
PRO
189
B
PRO
192
0.44
1CF8
PDB
1
1CF8
1CF8
PDB
2
1CF8
1
214
1CF8
1
214
1CF8
L
1
1
215
1
215
1CF8
1
215
1CF8
H
2
1
218
4
2
3
4
3
4
5
2
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
LEU
4
A
LEU
4
L
SER
7
A
SER
7
L
VAL
19
A
VAL
19
L
ALA
25
A
ALA
25
L
SER
70
A
SER
71
L
ILE
75
A
ILE
76
L
PHE
62
A
PHE
63
L
SER
67
A
SER
68
L
ILE
10
A
ILE
10
L
VAL
13
A
VAL
13
L
LYS
103
A
LYS
104
L
LEU
106
A
LEU
107
L
SER
85
A
SER
86
L
GLN
90
A
GLN
91
L
VAL
33
A
VAL
34
L
GLN
38
A
GLN
39
L
LYS
45
A
LYS
46
L
ILE
48
A
ILE
49
L
THR
114
A
THR
115
L
PHE
118
A
PHE
119
L
GLY
129
A
GLY
130
L
ASN
137
A
ASN
138
L
MET
175
A
MET
176
L
THR
182
A
THR
183
L
VAL
159
A
VAL
160
L
TRP
163
A
TRP
164
L
ASN
145
A
ASN
146
L
ILE
150
A
ILE
151
L
SER
191
A
SER
192
L
THR
197
A
THR
198
L
ILE
205
A
ILE
206
L
ASN
210
A
ASN
211
H
GLN
3
B
GLN
3
H
SER
7
B
SER
7
H
LEU
18
B
LEU
18
H
THR
25
B
THR
25
H
GLN
77
B
GLN
78
H
LEU
82
B
LEU
83
H
ILE
67
B
ILE
68
H
ASP
72
B
ASP
73
H
THR
107
B
THR
110
H
VAL
109
B
VAL
112
H
ALA
88
B
ALA
92
H
ALA
93
B
ALA
97
H
ALA
34
B
ALA
34
H
GLN
39
B
GLN
40
H
LEU
45
B
LEU
46
H
ARG
52
B
ARG
53
H
THR
57
B
THR
58
H
TYR
59
B
TYR
60
H
ALA
93
B
ALA
97
H
TYR
96
B
TYR
100
H
SER
99
B
SER
103
H
TRP
103
B
TRP
106
H
SER
120
B
SER
123
H
LEU
124
B
LEU
127
H
SER
135
B
SER
138
H
TYR
145
B
TYR
148
H
TYR
175
B
TYR
178
H
PRO
184
B
PRO
187
H
VAL
163
B
VAL
166
H
PHE
166
B
PHE
169
H
THR
151
B
THR
154
H
TRP
154
B
TRP
157
H
THR
194
B
THR
197
H
HIS
199
B
HIS
202
H
THR
204
B
THR
207
H
LYS
209
B
LYS
212
THIS IS A FULL OCCUPANCY CD2+ SITE.
Author
1
THIS IS A PARTIAL OCCUPANCY CD2+ SITE.
Author
1
BINDING SITE FOR RESIDUE CD H 1000
H
CD
1000
Software
2
BINDING SITE FOR RESIDUE CD L 1001
L
CD
1001
Software
2
BINDING SITE FOR RESIDUE HAZ H 800
H
HAZ
800
Software
15
H
CD
1000
D
CD
1
1_555
L
CD
1001
C
CD
1
1_555
H
ASP
173
B
ASP
176
2
1_555
L
GLU
81
A
GLU
82
2
4_556
L
GLU
187
A
GLU
188
2
1_555
L
GLU
213
A
GLU
214
2
1_555
H
GLY
32
B
GLY
32
15
1_555
H
TYR
33
B
TYR
33
15
1_555
H
ALA
34
B
ALA
34
15
1_555
H
ASN
35
B
ASN
36
A
15
1_555
H
ILE
37
B
ILE
38
15
1_555
H
ILE
94
B
ILE
98
15
1_555
H
GLY
95
B
GLY
99
15
1_555
H
TRP
103
B
TRP
106
15
1_555
H
LYS
213
B
LYS
216
15
1_556
H
ASP
214
B
ASP
217
15
1_556
H
HOH
1103
G
HOH
15
1_555
L
TYR
36
A
TYR
37
15
1_555
L
TRP
91
A
TRP
92
15
1_555
L
TYR
96
A
TYR
97
15
1_555
L
CYS
214
A
CYS
215
15
1_556
5
C 1 2 1