0.018494 0.010678 0.000000 0.000000 0.021356 0.000000 0.000000 0.000000 0.022427 0.00000 0.00000 0.00000 Heinemann, U. Bansal, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 54.070 54.070 44.590 C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C N 13 N N N 14 N C N 15 N O N 16 N N N 17 N C N 18 N N N 19 N C N 20 N C N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N H N 74 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing UK EMBO J. EMJODG 0897 0261-4189 11 1931 1939 1582421 Double helix conformation, groove dimensions and ligand binding potential of a G/C stretch in B-DNA. 1992 US J.Biol.Chem. JBCHA3 0071 0021-9258 267 7332 7341 C-C-A-G-G-C-m5C-T-G-C: Helical Fine Structure, Hydration, and Comparison with C-C-A-G-G-C-C-T-G-G 1992 UK Embo J. EMJODG 0897 0261-4189 10 35 43 The Conformation of a B-DNA Decamer Is Mainly Determined by Its Sequence and Not by Crystal Environment 1991 UK J.Mol.Biol. JMOBAK 0070 0022-2836 210 369 381 Crystallographic Study of One Turn of G/C-Rich B-DNA 1989 10.2210/pdb1cgc/pdb pdb_00001cgc 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 DIFFRACTOMETER ENRAF-NONIUS CAD4 x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ENRAF-NONIUS FR571 3046.980 DNA (5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') 2 syn polymer 18.015 water 47 nat water no no (DC)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DG)(DG) CCGGCGCCGG A,B polydeoxyribonucleotide n n n n n n n n n n 2.06 40.25 MICRODIALYSIS 7.00 pH 7.00, MICRODIALYSIS, temperature 277.00K 277.00 WATER 1 BIS-TRIS-PROPANE_HCL 1 MGCL2 1 WATER 2 MPD 2 -2.827 1 19 A 1 B 20 -2.847 A_DC1:DG20_B 1 -8.749 0.237 0.387 -0.179 5.227 1 19 A 2 B 19 1.333 A_DC2:DG19_B 2 -7.845 -0.112 -0.391 -0.096 3.134 1 19 A 3 B 18 -0.842 A_DG3:DC18_B 3 -7.014 -0.004 -0.012 -0.107 6.320 1 19 A 4 B 17 0.355 A_DG4:DC17_B 4 -8.251 -0.284 0.172 -0.124 -7.082 1 19 A 5 B 16 -2.135 A_DC5:DG16_B 5 -11.684 0.054 0.199 -0.123 8.878 1 19 A 6 B 15 -2.960 A_DG6:DC15_B 6 -5.308 -0.127 0.360 -0.130 -8.227 1 19 A 7 B 14 -4.633 A_DC7:DG14_B 7 -16.088 0.014 0.644 -0.152 -9.406 1 19 A 8 B 13 -4.268 A_DC8:DG13_B 8 -5.720 0.296 0.240 -0.177 4.513 1 19 A 9 B 12 0.035 A_DG9:DC12_B 9 -7.934 0.014 -0.122 -0.124 3.312 1 19 A 10 B 11 -0.619 A_DG10:DC11_B 10 -13.990 -0.014 -0.177 -0.174 3.112 37.510 A A 1 2 10.176 B B 20 19 3.122 6.476 0.028 0.485 AA_DC1DC2:DG19DG20_BB 1 7.072 -11.113 36.306 -0.066 0.854 3.545 36.034 A A 2 3 8.733 B B 19 18 3.405 5.383 0.462 1.181 AA_DC2DG3:DC18DG19_BB 2 0.398 -0.646 35.640 1.093 -0.687 3.505 36.781 A A 3 4 2.933 B B 18 17 3.426 1.848 -0.782 0.747 AA_DG3DG4:DC17DC18_BB 3 -2.719 4.314 36.639 0.916 0.846 3.644 36.945 A A 4 5 -2.183 B B 17 16 3.620 -1.383 0.689 0.117 AA_DG4DC5:DG16DC17_BB 4 1.977 -3.122 36.869 0.392 -0.791 3.125 29.151 A A 5 6 15.945 B B 16 15 3.028 7.927 -0.041 0.776 AA_DC5DG6:DC15DG16_BB 5 -1.021 2.054 28.056 -0.118 -0.132 3.819 38.307 A A 6 7 -5.679 B B 15 14 3.819 -3.720 -0.618 0.079 AA_DG6DC7:DG14DC15_BB 6 -1.817 2.774 38.091 0.666 0.675 3.528 42.896 A A 7 8 6.715 B B 14 13 3.449 4.896 0.700 0.496 AA_DC7DC8:DG13DG14_BB 7 3.754 -5.149 42.471 0.156 -0.557 3.438 24.515 A A 8 9 16.705 B B 13 12 3.227 6.956 0.459 1.120 AA_DC8DG9:DC12DG13_BB 8 4.567 -10.967 23.080 0.376 0.405 3.449 44.206 A A 9 10 2.884 B B 12 11 3.362 2.168 -0.221 1.796 AA_DG9DG10:DC11DC12_BB 9 -2.925 3.890 44.064 2.176 0.008 diffrn_detector chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Data collection Database references 1 0 1993-04-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2018-04-18 1 4 2024-02-07 _diffrn_detector.detector _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1992-01-15 REL REL HOH water HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 25 2 HOH HOH 25 A HOH 31 2 HOH HOH 31 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 53 2 HOH HOH 53 A HOH 54 2 HOH HOH 54 A HOH 55 2 HOH HOH 55 A HOH 56 2 HOH HOH 56 A HOH 57 2 HOH HOH 57 A HOH 58 2 HOH HOH 58 A HOH 64 2 HOH HOH 64 A HOH 21 2 HOH HOH 21 B HOH 26 2 HOH HOH 26 B HOH 27 2 HOH HOH 27 B HOH 28 2 HOH HOH 28 B HOH 29 2 HOH HOH 29 B HOH 30 2 HOH HOH 30 B HOH 32 2 HOH HOH 32 B HOH 35 2 HOH HOH 35 B HOH 38 2 HOH HOH 38 B HOH 43 2 HOH HOH 43 B HOH 46 2 HOH HOH 46 B HOH 47 2 HOH HOH 47 B HOH 48 2 HOH HOH 48 B HOH 49 2 HOH HOH 49 B HOH 50 2 HOH HOH 50 B HOH 51 2 HOH HOH 51 B HOH 52 2 HOH HOH 52 B HOH 59 2 HOH HOH 59 B HOH 60 2 HOH HOH 60 B HOH 61 2 HOH HOH 61 B HOH 62 2 HOH HOH 62 B HOH 63 2 HOH HOH 63 B HOH 65 2 HOH HOH 65 B HOH 66 2 HOH HOH 66 B HOH 67 2 HOH HOH 67 B C 1 n 1 DC 1 A C 2 n 2 DC 2 A G 3 n 3 DG 3 A G 4 n 4 DG 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A C 7 n 7 DC 7 A C 8 n 8 DC 8 A G 9 n 9 DG 9 A G 10 n 10 DG 10 A C 11 n 1 DC 11 B C 12 n 2 DC 12 B G 13 n 3 DG 13 B G 14 n 4 DG 14 B C 15 n 5 DC 15 B G 16 n 6 DG 16 B C 17 n 7 DC 17 B C 18 n 8 DC 18 B G 19 n 9 DG 19 B G 20 n 10 DG 20 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -6.29 0.80 109.40 103.11 A A A O5' C5' C4' DC DC DC 1 1 1 N 1 5.01 0.70 120.20 125.21 A A A C5 C4 N4 DC DC DC 2 2 2 N 1 -5.90 0.80 102.40 96.50 A A A C3' C2' C1' DG DG DG 3 3 3 N 1 6.43 0.30 108.30 114.73 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 3.47 0.50 111.50 114.97 A A A C5 C6 N1 DG DG DG 3 3 3 N 1 -4.64 0.60 128.60 123.96 A A A C5 C6 O6 DG DG DG 3 3 3 N 1 17.84 1.20 110.70 128.54 A A A O5' P OP2 DG DG DG 4 4 4 N 1 -4.65 0.70 108.00 103.35 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 -5.65 0.70 119.90 114.25 A A A N3 C2 N2 DG DG DG 4 4 4 N 1 -9.77 1.60 120.90 111.13 A A A P O5' C5' DC DC DC 5 5 5 N 1 15.77 1.20 110.70 126.47 A A A O5' P OP2 DG DG DG 6 6 6 N 1 2.99 0.30 108.30 111.29 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 21.39 1.20 119.70 141.09 A A A C3' O3' P DG DG DC 6 6 7 Y 1 -12.26 1.50 119.60 107.34 A A A OP1 P OP2 DC DC DC 7 7 7 N 1 12.19 1.20 110.70 122.89 A A A O5' P OP1 DC DC DC 7 7 7 N 1 14.32 1.60 120.90 135.22 A A A P O5' C5' DC DC DC 7 7 7 N 1 -5.81 0.80 105.90 100.09 A A A O4' C1' C2' DC DC DC 7 7 7 N 1 2.09 0.30 108.30 110.39 A A A O4' C1' N1 DC DC DC 7 7 7 N 1 4.62 0.60 118.90 123.52 A A A N1 C2 O2 DC DC DC 7 7 7 N 1 9.73 1.20 110.70 120.43 A A A O5' P OP2 DC DC DC 8 8 8 N 1 -17.75 1.60 120.90 103.15 A A A P O5' C5' DC DC DC 8 8 8 N 1 4.40 0.70 118.00 122.40 A A A N3 C4 N4 DC DC DC 8 8 8 N 1 -7.58 1.20 119.70 112.12 A A A C3' O3' P DC DC DG 8 8 9 Y 1 -3.65 0.60 119.90 116.25 A A A N1 C6 O6 DG DG DG 9 9 9 N 1 -13.19 1.50 119.60 106.41 A A A OP1 P OP2 DG DG DG 10 10 10 N 1 11.64 1.20 110.70 122.34 A A A O5' P OP2 DG DG DG 10 10 10 N 1 16.15 1.60 120.90 137.05 A A A P O5' C5' DG DG DG 10 10 10 N 1 2.94 0.30 108.30 111.24 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 -5.08 0.60 128.60 123.52 A A A C5 C6 O6 DG DG DG 10 10 10 N 1 -5.05 0.80 102.40 97.35 B B B C3' C2' C1' DC DC DC 11 11 11 N 1 -5.05 0.80 105.90 100.85 B B B O4' C1' C2' DC DC DC 11 11 11 N 1 6.42 0.30 108.30 114.72 B B B O4' C1' N1 DC DC DC 11 11 11 N 1 16.53 1.20 110.70 127.23 B B B O5' P OP2 DC DC DC 12 12 12 N 1 -2.91 0.40 121.90 118.99 B B B N3 C4 C5 DC DC DC 12 12 12 N 1 -11.54 1.50 119.60 108.06 B B B OP1 P OP2 DG DG DG 13 13 13 N 1 10.78 1.20 110.70 121.48 B B B O5' P OP1 DG DG DG 13 13 13 N 1 -8.22 0.80 102.40 94.18 B B B C3' C2' C1' DG DG DG 13 13 13 N 1 8.42 0.30 108.30 116.72 B B B O4' C1' N9 DG DG DG 13 13 13 N 1 8.01 1.20 119.70 127.71 B B B C3' O3' P DG DG DG 13 13 14 Y 1 -6.17 0.40 104.50 98.33 B B B O4' C4' C3' DG DG DG 14 14 14 N 1 5.93 0.30 108.30 114.23 B B B O4' C1' N9 DG DG DG 14 14 14 N 1 5.75 0.30 108.30 114.05 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 -2.82 0.40 121.90 119.08 B B B N3 C4 C5 DC DC DC 15 15 15 N 1 5.22 0.70 118.00 123.22 B B B N3 C4 N4 DC DC DC 15 15 15 N 1 14.11 1.20 119.70 133.81 B B B C3' O3' P DC DC DG 15 15 16 Y 1 -7.09 0.80 102.40 95.31 B B B C3' C2' C1' DG DG DG 16 16 16 N 1 3.01 0.30 108.30 111.31 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 4.21 0.50 111.50 115.71 B B B C5 C6 N1 DG DG DG 16 16 16 N 1 -3.91 0.60 119.90 115.99 B B B N1 C6 O6 DG DG DG 16 16 16 N 1 6.76 1.10 110.50 117.26 B B B O3' P OP1 DG DC DC 16 17 17 Y 1 -12.49 1.50 119.60 107.11 B B B OP1 P OP2 DC DC DC 17 17 17 N 1 -2.52 0.40 121.90 119.38 B B B N3 C4 C5 DC DC DC 17 17 17 N 1 5.16 0.60 118.90 124.06 B B B N1 C2 O2 DC DC DC 17 17 17 N 1 43.00 1.20 119.70 162.70 B B B C3' O3' P DC DC DC 17 17 18 Y 1 15.63 1.10 110.50 126.13 B B B O3' P OP1 DC DC DC 17 18 18 Y 1 -11.51 1.50 119.60 108.09 B B B OP1 P OP2 DC DC DC 18 18 18 N 1 -13.32 1.60 120.90 107.58 B B B P O5' C5' DC DC DC 18 18 18 N 1 -3.18 0.40 104.50 101.32 B B B O4' C4' C3' DC DC DC 18 18 18 N 1 -7.25 0.80 102.40 95.15 B B B C3' C2' C1' DC DC DC 18 18 18 N 1 8.68 0.30 108.30 116.98 B B B O4' C1' N1 DC DC DC 18 18 18 N 1 -6.67 0.80 109.40 102.73 B B B O5' C5' C4' DG DG DG 19 19 19 N 1 12.10 1.20 119.70 131.80 B B B C3' O3' P DG DG DG 19 19 20 Y 1 7.68 1.20 110.70 118.38 B B B O5' P OP1 DG DG DG 20 20 20 N 1 3.10 0.50 111.50 114.60 B B B C5 C6 N1 DG DG DG 20 20 20 N 1 A A P O5' DC DC 5 5 0.062 0.010 1.593 1.655 N 1 A A P OP2 DC DC 7 7 0.112 0.017 1.485 1.597 N 1 A A P O5' DC DC 7 7 -0.121 0.010 1.593 1.472 N 1 B B N3 C4 DC DC 11 11 0.051 0.007 1.335 1.386 N 1 B B P O5' DC DC 15 15 0.085 0.010 1.593 1.678 N 1 B B O3' P DC DG 15 16 -0.081 0.012 1.607 1.526 Y 1 B B O3' P DC DC 17 18 -0.120 0.012 1.607 1.487 Y 1 B B P O5' DC DC 18 18 0.074 0.010 1.593 1.667 N 0.1670000 2.200 8.000 2019 1 1.000 TR isotropic TR isotropic 2.200 8.000 47 451 0 404 0 fix fix 2.200 1CGC 3078 2086 1.000 1 refinement NUCLSQ DOUBLE HELIX CONFORMATION GROOVE DIMENSIONS AND LIGAND BINDING POTENTIAL OF A G/C-STRETCH IN B-DNA 1 N N 1 N N 2 N N 2 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 20 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 20 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 20 B N2 DG 10 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 19 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 19 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 19 B N2 DG 9 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 18 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 18 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 18 B N4 DC 8 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 17 B N3 DC 7 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 17 B O2 DC 7 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 17 B N4 DC 7 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 16 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 16 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 16 B N2 DG 6 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 15 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 15 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 15 B N4 DC 5 1_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 B DG 14 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 B DG 14 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 B DG 14 B N2 DG 4 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 13 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 13 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 13 B N2 DG 3 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 12 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 12 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 12 B N4 DC 2 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 11 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 11 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 11 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, DNA 1CGC PDB 1 1CGC 1 10 1CGC 1 10 1CGC A 1 1 10 11 20 1CGC 11 20 1CGC B 1 1 10 146 H 3