1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
ASN E 3 - PRO E 4 OMEGA =147.02 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
LEU E 51 - PRO E 52 OMEGA =134.87 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
ASN E 101 - PRO E 102 OMEGA =299.88 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
Wang, H.
Stubbs, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
49
90.00
90.00
90.00
1.000
1.000
70.800
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
239
371
384
10.1006/jmbi.1994.1379
8201619
Structure determination of cucumber green mottle mosaic virus by X-ray fiber diffraction. Significance for the evolution of tobamoviruses.
1994
DK
Acta Crystallogr.,Sect.A
ACACEQ
0621
0108-7673
49
504
Molecular Dynamics in Refinement Against Fiber Diffraction Data
1993
DK
Acta Crystallogr.,Sect.A
ACACEQ
0621
0108-7673
46
993
Fiber Diffraction Analysis of Cucumber Green Mottle Mosaic Virus Using Limited Numbers of Heavy-Atom Derivatives
1990
DK
Acta Crystallogr.,Sect.A
ACACEQ
0621
0108-7673
45
254
The Probability Distributions of X-Ray Intensities in Fiber Diffraction: Largest Likely Values for Fiber Diffraction R Factors
1989
DK
Acta Crystallogr.,Sect.A
ACACEQ
0621
0108-7673
43
64
Isomorphous Replacement in Fiber Diffraction Using Limited Numbers of Heavy-Atom Derivatives
1987
DK
Acta Crystallogr.,Sect.A
ACACEQ
0621
0108-7673
41
252
Solving the Phase Problem in Fiber Diffraction. Application to Tobacco Mosaic Virus at 3.6 Angstroms Resolution
1985
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
1
1.0
958.660
RNA (5'-R(P*GP*AP*A)-3')
1
syn
polymer
17303.215
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
1
man
polymer
18.015
water
5
nat
water
no
no
GAA
GAA
I
polyribonucleotide
no
yes
(ACE)AYNPITPSKLIAFSASYVPVRTLLNFLVASQGTAFQTQAGRDSFRESLSALPSSVVDINSRFPDAGFYAFLNGPV
LRPIFVSLLSSTDTRNRVIEVVDPSNPTTAESLNAVKRTDDASTAARAEIDNLIESISKGFDVYDRASFEAAFSVVWSEA
TTSKA
XAYNPITPSKLIAFSASYVPVRTLLNFLVASQGTAFQTQAGRDSFRESLSALPSSVVDINSRFPDAGFYAFLNGPVLRPI
FVSLLSSTDTRNRVIEVVDPSNPTTAESLNAVKRTDDASTAARAEIDNLIESISKGFDVYDRASFEAAFSVVWSEATTSK
A
E
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
WATERMELON
sample
12235
Cucumber green mottle mosaic virus
pdbx_database_status
struct_conf
struct_conf_type
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
1
0
1994-04-30
1
1
2008-03-03
1
2
2011-07-13
1
3
2017-11-29
_pdbx_database_status.process_site
Y
BNL
1993-11-17
REL
HOH
water
1
no
49
49
70.800000
1080.000000
HOH
171
3
HOH
HOH
171
E
HOH
172
3
HOH
HOH
172
E
HOH
173
3
HOH
HOH
173
E
HOH
174
3
HOH
HOH
174
E
HOH
175
3
HOH
HOH
175
E
G
1
n
1
G
1
I
A
2
n
2
A
2
I
A
3
n
3
A
3
I
ACE
0
n
1
ACE
0
E
ALA
1
n
2
ALA
1
E
TYR
2
n
3
TYR
2
E
ASN
3
n
4
ASN
3
E
PRO
4
n
5
PRO
4
E
ILE
5
n
6
ILE
5
E
THR
6
n
7
THR
6
E
PRO
7
n
8
PRO
7
E
SER
8
n
9
SER
8
E
LYS
9
n
10
LYS
9
E
LEU
10
n
11
LEU
10
E
ILE
11
n
12
ILE
11
E
ALA
12
n
13
ALA
12
E
PHE
13
n
14
PHE
13
E
SER
14
n
15
SER
14
E
ALA
15
n
16
ALA
15
E
SER
16
n
17
SER
16
E
TYR
17
n
18
TYR
17
E
VAL
18
n
19
VAL
18
E
PRO
19
n
20
PRO
19
E
VAL
20
n
21
VAL
20
E
ARG
21
n
22
ARG
21
E
THR
22
n
23
THR
22
E
LEU
23
n
24
LEU
23
E
LEU
24
n
25
LEU
24
E
ASN
25
n
26
ASN
25
E
PHE
26
n
27
PHE
26
E
LEU
27
n
28
LEU
27
E
VAL
28
n
29
VAL
28
E
ALA
29
n
30
ALA
29
E
SER
30
n
31
SER
30
E
GLN
31
n
32
GLN
31
E
GLY
32
n
33
GLY
32
E
THR
33
n
34
THR
33
E
ALA
34
n
35
ALA
34
E
PHE
35
n
36
PHE
35
E
GLN
36
n
37
GLN
36
E
THR
37
n
38
THR
37
E
GLN
38
n
39
GLN
38
E
ALA
39
n
40
ALA
39
E
GLY
40
n
41
GLY
40
E
ARG
41
n
42
ARG
41
E
ASP
42
n
43
ASP
42
E
SER
43
n
44
SER
43
E
PHE
44
n
45
PHE
44
E
ARG
45
n
46
ARG
45
E
GLU
46
n
47
GLU
46
E
SER
47
n
48
SER
47
E
LEU
48
n
49
LEU
48
E
SER
49
n
50
SER
49
E
ALA
50
n
51
ALA
50
E
LEU
51
n
52
LEU
51
E
PRO
52
n
53
PRO
52
E
SER
53
n
54
SER
53
E
SER
54
n
55
SER
54
E
VAL
55
n
56
VAL
55
E
VAL
56
n
57
VAL
56
E
ASP
57
n
58
ASP
57
E
ILE
58
n
59
ILE
58
E
ASN
59
n
60
ASN
59
E
SER
60
n
61
SER
60
E
ARG
61
n
62
ARG
61
E
PHE
62
n
63
PHE
62
E
PRO
63
n
64
PRO
63
E
ASP
64
n
65
ASP
64
E
ALA
65
n
66
ALA
65
E
GLY
66
n
67
GLY
66
E
PHE
67
n
68
PHE
67
E
TYR
68
n
69
TYR
68
E
ALA
69
n
70
ALA
69
E
PHE
70
n
71
PHE
70
E
LEU
71
n
72
LEU
71
E
ASN
72
n
73
ASN
72
E
GLY
73
n
74
GLY
73
E
PRO
74
n
75
PRO
74
E
VAL
75
n
76
VAL
75
E
LEU
76
n
77
LEU
76
E
ARG
77
n
78
ARG
77
E
PRO
78
n
79
PRO
78
E
ILE
79
n
80
ILE
79
E
PHE
80
n
81
PHE
80
E
VAL
81
n
82
VAL
81
E
SER
82
n
83
SER
82
E
LEU
83
n
84
LEU
83
E
LEU
84
n
85
LEU
84
E
SER
85
n
86
SER
85
E
SER
86
n
87
SER
86
E
THR
87
n
88
THR
87
E
ASP
88
n
89
ASP
88
E
THR
89
n
90
THR
89
E
ARG
90
n
91
ARG
90
E
ASN
91
n
92
ASN
91
E
ARG
92
n
93
ARG
92
E
VAL
93
n
94
VAL
93
E
ILE
94
n
95
ILE
94
E
GLU
95
n
96
GLU
95
E
VAL
96
n
97
VAL
96
E
VAL
97
n
98
VAL
97
E
ASP
98
n
99
ASP
98
E
PRO
99
n
100
PRO
99
E
SER
100
n
101
SER
100
E
ASN
101
n
102
ASN
101
E
PRO
102
n
103
PRO
102
E
THR
103
n
104
THR
103
E
THR
104
n
105
THR
104
E
ALA
105
n
106
ALA
105
E
GLU
106
n
107
GLU
106
E
SER
107
n
108
SER
107
E
LEU
108
n
109
LEU
108
E
ASN
109
n
110
ASN
109
E
ALA
110
n
111
ALA
110
E
VAL
111
n
112
VAL
111
E
LYS
112
n
113
LYS
112
E
ARG
113
n
114
ARG
113
E
THR
114
n
115
THR
114
E
ASP
115
n
116
ASP
115
E
ASP
116
n
117
ASP
116
E
ALA
117
n
118
ALA
117
E
SER
118
n
119
SER
118
E
THR
119
n
120
THR
119
E
ALA
120
n
121
ALA
120
E
ALA
121
n
122
ALA
121
E
ARG
122
n
123
ARG
122
E
ALA
123
n
124
ALA
123
E
GLU
124
n
125
GLU
124
E
ILE
125
n
126
ILE
125
E
ASP
126
n
127
ASP
126
E
ASN
127
n
128
ASN
127
E
LEU
128
n
129
LEU
128
E
ILE
129
n
130
ILE
129
E
GLU
130
n
131
GLU
130
E
SER
131
n
132
SER
131
E
ILE
132
n
133
ILE
132
E
SER
133
n
134
SER
133
E
LYS
134
n
135
LYS
134
E
GLY
135
n
136
GLY
135
E
PHE
136
n
137
PHE
136
E
ASP
137
n
138
ASP
137
E
VAL
138
n
139
VAL
138
E
TYR
139
n
140
TYR
139
E
ASP
140
n
141
ASP
140
E
ARG
141
n
142
ARG
141
E
ALA
142
n
143
ALA
142
E
SER
143
n
144
SER
143
E
PHE
144
n
145
PHE
144
E
GLU
145
n
146
GLU
145
E
ALA
146
n
147
ALA
146
E
ALA
147
n
148
ALA
147
E
PHE
148
n
149
PHE
148
E
SER
149
n
150
SER
149
E
VAL
150
n
151
VAL
150
E
VAL
151
n
152
VAL
151
E
TRP
152
n
153
TRP
152
E
SER
153
n
154
SER
153
E
GLU
154
n
155
GLU
154
E
ALA
155
n
156
ALA
155
E
THR
156
n
157
THR
156
E
THR
157
n
158
THR
157
E
SER
158
n
159
SER
158
E
LYS
159
n
160
LYS
159
E
ALA
160
n
161
ALA
160
E
representative helical assembly
98
helical
helical asymmetric unit
2
dimeric
helical asymmetric unit, std helical frame
2
dimeric
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
transform to helical frame
0.00000
0.00000
0.00000
-0.98155916
0.19115863
0.00000000
-0.19115863
-0.98155916
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-34.67755
-0.83808810
0.54553490
0.00000000
-0.54553490
-0.83808810
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-33.23265
-0.57211666
0.82017225
0.00000000
-0.82017225
-0.57211666
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-31.78776
-0.22252093
0.97492791
0.00000000
-0.97492791
-0.22252093
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-30.34286
0.15959990
0.98718178
0.00000000
-0.98718178
0.15959990
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-28.89796
0.51839257
0.85514276
0.00000000
-0.85514276
0.51839257
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-27.45306
0.80141362
0.59811053
0.00000000
-0.59811053
0.80141362
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-26.00816
0.96729486
0.25365458
0.00000000
-0.25365458
0.96729486
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-24.56327
0.99179001
-0.12787716
0.00000000
0.12787716
0.99179001
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-23.11837
0.87131870
-0.49071755
0.00000000
0.49071755
0.87131870
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-21.67347
0.62348980
-0.78183148
0.00000000
0.78183148
0.62348980
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-20.22857
0.28452759
-0.95866785
0.00000000
0.95866785
0.28452759
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-18.78367
-0.09602303
-0.99537911
0.00000000
0.99537911
-0.09602303
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-17.33878
-0.46253829
-0.88659931
0.00000000
0.88659931
-0.46253829
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-15.89388
-0.76144596
-0.64822840
0.00000000
0.64822840
-0.76144596
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-14.44898
-0.94905575
-0.31510822
0.00000000
0.31510822
-0.94905575
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-13.00408
-0.99794539
0.06407022
0.00000000
-0.06407022
-0.99794539
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-11.55918
-0.90096887
0.43388374
0.00000000
-0.43388374
-0.90096887
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-10.11429
-0.67230089
0.74027800
0.00000000
-0.74027800
-0.67230089
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-8.66939
-0.34536505
0.93846842
0.00000000
-0.93846842
-0.34536505
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-7.22449
0.03205158
0.99948622
0.00000000
-0.99948622
0.03205158
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-5.77959
0.40478334
0.91441262
0.00000000
-0.91441262
0.40478334
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-4.33469
0.71834935
0.69568255
0.00000000
-0.69568255
0.71834935
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-2.88980
0.92691676
0.37526700
0.00000000
-0.37526700
0.92691676
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-1.44490
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
0.00000
0.92691676
-0.37526700
0.00000000
0.37526700
0.92691676
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
1.44490
0.71834935
-0.69568255
0.00000000
0.69568255
0.71834935
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
2.88980
0.40478334
-0.91441262
0.00000000
0.91441262
0.40478334
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
4.33469
0.03205158
-0.99948622
0.00000000
0.99948622
0.03205158
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
5.77959
-0.34536505
-0.93846842
0.00000000
0.93846842
-0.34536505
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
7.22449
-0.67230089
-0.74027800
0.00000000
0.74027800
-0.67230089
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
8.66939
-0.90096887
-0.43388374
0.00000000
0.43388374
-0.90096887
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
10.11429
-0.99794539
-0.06407022
0.00000000
0.06407022
-0.99794539
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
11.55918
-0.94905575
0.31510822
0.00000000
-0.31510822
-0.94905575
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
13.00408
-0.76144596
0.64822840
0.00000000
-0.64822840
-0.76144596
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
14.44898
-0.46253829
0.88659931
0.00000000
-0.88659931
-0.46253829
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
15.89388
-0.09602303
0.99537911
0.00000000
-0.99537911
-0.09602303
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
17.33878
0.28452759
0.95866785
0.00000000
-0.95866785
0.28452759
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
18.78367
0.62348980
0.78183148
0.00000000
-0.78183148
0.62348980
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
20.22857
0.87131870
0.49071755
0.00000000
-0.49071755
0.87131870
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
21.67347
0.99179001
0.12787716
0.00000000
-0.12787716
0.99179001
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
23.11837
0.96729486
-0.25365458
0.00000000
0.25365458
0.96729486
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
24.56327
0.80141362
-0.59811053
0.00000000
0.59811053
0.80141362
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
26.00816
0.51839257
-0.85514276
0.00000000
0.85514276
0.51839257
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
27.45306
0.15959990
-0.98718178
0.00000000
0.98718178
0.15959990
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
28.89796
-0.22252093
-0.97492791
0.00000000
0.97492791
-0.22252093
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
30.34286
-0.57211666
-0.82017225
0.00000000
0.82017225
-0.57211666
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
31.78776
-0.83808810
-0.54553490
0.00000000
0.54553490
-0.83808810
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
33.23265
-0.98155916
-0.19115863
0.00000000
0.19115863
-0.98155916
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
34.67755
1
E
E
ASN
PRO
3
4
147.02
1
E
E
LEU
PRO
51
52
134.86
1
E
E
ASN
PRO
101
102
-60.12
1
5.69
0.80
106.10
111.79
I
I
I
O4'
C4'
C3'
G
G
G
1
1
1
N
1
8.73
0.80
101.50
110.23
I
I
I
C3'
C2'
C1'
G
G
G
1
1
1
N
1
7.47
0.70
108.50
115.97
I
I
I
O4'
C1'
N9
G
G
G
1
1
1
N
1
-5.21
0.70
109.70
104.49
I
I
I
C1'
O4'
C4'
A
A
A
2
2
2
N
1
-14.91
1.10
112.00
97.09
I
I
I
N9
C1'
C2'
A
A
A
2
2
2
N
1
9.28
0.70
108.50
117.78
I
I
I
O4'
C1'
N9
A
A
A
2
2
2
N
1
6.05
0.70
108.50
114.55
I
I
I
O4'
C1'
N9
A
A
A
3
3
3
N
1
18.13
2.80
117.10
135.23
E
E
E
CA
C
N
THR
THR
PRO
6
6
7
Y
1
14.74
1.90
113.40
128.14
E
E
E
CA
CB
CG
TYR
TYR
TYR
17
17
17
N
1
-5.50
0.60
121.00
115.50
E
E
E
CB
CG
CD2
TYR
TYR
TYR
17
17
17
N
1
4.66
0.60
121.00
125.66
E
E
E
CB
CG
CD1
TYR
TYR
TYR
17
17
17
N
1
16.90
2.70
111.00
127.90
E
E
E
N
CA
C
VAL
VAL
VAL
18
18
18
N
1
-14.53
2.20
117.20
102.67
E
E
E
CA
C
N
GLN
GLN
THR
36
36
37
Y
1
-13.94
2.20
117.20
103.26
E
E
E
CA
C
N
THR
THR
GLN
37
37
38
Y
1
-18.37
2.70
111.00
92.63
E
E
E
N
CA
C
ASP
ASP
ASP
57
57
57
N
1
11.76
1.90
113.40
125.16
E
E
E
CA
CB
CG
TYR
TYR
TYR
68
68
68
N
1
3.19
0.50
120.30
123.49
E
E
E
NE
CZ
NH1
ARG
ARG
ARG
77
77
77
N
1
21.02
2.70
111.00
132.02
E
E
E
N
CA
C
ARG
ARG
ARG
90
90
90
N
1
20.47
2.70
111.00
131.47
E
E
E
N
CA
C
GLU
GLU
GLU
95
95
95
N
1
-18.13
2.20
117.20
99.07
E
E
E
CA
C
N
GLU
GLU
VAL
95
95
96
Y
1
9.91
1.60
122.70
132.61
E
E
E
O
C
N
GLU
GLU
VAL
95
95
96
Y
1
-4.49
0.50
120.30
115.81
E
E
E
NE
CZ
NH2
ARG
ARG
ARG
113
113
113
N
1
3.01
0.50
120.30
123.31
E
E
E
NE
CZ
NH1
ARG
ARG
ARG
141
141
141
N
1
5.55
0.80
106.30
111.85
E
E
E
CD1
CG
CD2
TRP
TRP
TRP
152
152
152
N
1
-5.37
0.80
107.30
101.93
E
E
E
CE2
CD2
CG
TRP
TRP
TRP
152
152
152
N
1
I
I
O3'
P
G
A
1
2
0.088
0.012
1.607
1.695
Y
1
E
THR
6
-85.85
-93.06
1
E
PRO
7
-82.37
-157.71
1
E
SER
8
-102.60
74.93
1
E
LYS
9
-57.00
-9.36
1
E
ALA
12
-90.06
34.29
1
E
SER
14
-105.42
-60.74
1
E
SER
16
-172.24
-5.11
1
E
PRO
19
-36.56
-86.13
1
E
ARG
21
-52.00
-82.49
1
E
GLN
36
-38.80
-39.79
1
E
THR
37
-54.14
-177.21
1
E
GLN
38
-100.95
-67.60
1
E
GLU
46
-52.21
-79.63
1
E
SER
47
-52.00
-78.21
1
E
SER
53
-58.82
85.53
1
E
ASP
57
-110.42
-77.22
1
E
ILE
58
-147.98
-13.97
1
E
PRO
63
-48.89
84.66
1
E
PHE
67
-129.33
-53.03
1
E
ASN
72
-154.43
-75.17
1
E
PRO
74
-76.42
-70.17
1
E
PRO
78
-61.49
-78.25
1
E
ILE
79
-45.22
-77.49
1
E
VAL
81
-92.08
-69.57
1
E
ARG
90
-37.68
3.37
1
E
VAL
96
-60.38
-82.92
1
E
VAL
97
-155.92
-41.55
1
E
PRO
99
-32.34
-38.19
1
E
GLU
106
-124.25
-63.40
1
E
ARG
122
-38.46
-79.45
1
E
LYS
134
-120.46
-65.31
1
E
PHE
136
-54.99
105.91
1
E
ASP
137
-171.69
-25.52
1
E
ASP
140
-99.98
-155.91
1
E
ARG
141
-62.11
-71.09
1
E
ALA
155
-92.76
-72.82
1
E
THR
156
-86.79
-84.12
1
E
LYS
159
-96.78
34.71
STRUCTURE WAS DETERMINED FROM FIBER DIFFRACTION DATA BY
MULTI-DIMENSIONAL ISOMORPHOUS REPLACEMENT WITH THREE HEAVY
ATOM DERIVATIVES. CGMMV HAS 36 PERCENT SEQUENCE HOMOLOGY
WITH TOBACCO MOSAIC VIRUS (TMV). THE STRUCTURE INCLUDES
ALL 160 AMINO ACIDS, 3 RNA NUCLEOTIDES (MODELED AS GAA) AND
6 WATER MOLECULES.
0.093
0.093
3.4
1
3.4
5
1296
0
67
1224
0.016
3.7
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
CUCUMBER GREEN MOTTLE MOSAIC VIRUS (CGMMV), WATERMELON STRAIN (FIBER DIFFRACTION)
STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES
1
N
N
2
N
N
3
N
N
THE FOLLOWING TRANSFORMATION REPRESENTS HELICAL SYMMETRY
WITH THE HELIX AXIS ON THE Z AXIS. APPLYING THIS
TRANSFORMATION 48 TIMES TO THE COORDINATES IN THIS ENTRY
WILL YIELD 49 SUBUNITS IN THREE TURNS OF THE HELIX. THE
FULL (49 SUBUNIT) HELICAL REPEAT IS 70.8 ANGSTROMS LONG IN
THE Z DIRECTION.
MTRIX1 0.926900 -0.375300 0.000000 0.00000
MTRIX2 0.375300 0.926900 0.000000 0.00000
MTRIX3 0.000000 0.000000 1.000000 1.44490
THE LENGTH OF THE BASIC REPEAT UNIT IS 70.8 ANGSTROMS.
THE NUMBER OF SUBUNITS IN THE BASIC REPEAT UNIT IS 49.
E
VAL
18
B
VAL
19
HELX_P
ENDS POORLY DEFINED
E
GLY
32
B
GLY
33
1
LS
15
E
THR
37
B
THR
38
HELX_P
ENDS POORLY DEFINED
E
LEU
51
B
LEU
52
1
RS
15
E
VAL
75
B
VAL
76
HELX_P
ENDS POORLY DEFINED
E
SER
86
B
SER
87
1
RR
12
E
ALA
110
B
ALA
111
HELX_P
ENDS POORLY DEFINED
E
PHE
136
B
PHE
137
1
LR
27
covale
1.344
E
ACE
0
B
C
ACE
1
1_555
E
ALA
1
B
N
ALA
2
1_555
VIRUS
VIRUS, Helical virus
COAT_CGMVS
UNP
2
1
P19521
AYNPITPSKLIAFSASYVPVRTLLNFLVASQGTAFQTQAGRDSFRESLSALPSSVVDINSRFPDAGFYAFLNGPVLRPIF
VSLLSSTDTRNRVIEVVDPSNPTTAESLNAVKRTDDASTAARAEIDNLIESISKGFDVYDRASFEAAFSVVWSEATTSKA
1CGM
PDB
1
1CGM
1
160
1CGM
1
160
P19521
E
1
2
161
1
3
1CGM
1
3
1CGM
I
2
1
3
1
P 1