0.018315 0.010574 0.000000 0.000000 0.021148 0.000000 0.000000 0.000000 0.005543 0.00000 0.00000 0.00000 Dobbs, A.J. Faber, H.R. Anderson, B.F. Baker, E.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 54.600 54.600 180.400 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H34 Fe N4 O4 618.503 HEME C non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H7 N O3 129.114 n PYROGLUTAMIC ACID L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 52 356 368 10.1107/S0907444995008328 15299707 Three-dimensional structure of cytochrome c' from two Alcaligenes species and the implications for four-helix bundle structures. 1996 UK J.Mol.Biol. JMOBAK 0070 0022-2836 234 433 Atomic Structure of a Cytochrome C' with an Unusual Ligand-Controlled Dimer Dissociation at 1.8 Angstroms Resolution 1993 JA J.Biochem.(Tokyo) JOBIAO 0418 0021-924X 111 317 Three-Dimensional Structure of Ferricytochrome C' from Rhodospirillum Rubrum at 2.8 Angstroms Resolution 1992 UK J.Mol.Biol. JMOBAK 0070 0022-2836 186 627 Structure of Ferricytochrome C' from Rhodospirillum Molischianum at 1.67 Angstroms 1985 UK J.Mol.Biol. JMOBAK 0070 0022-2836 353 399 Crystallographic Structure of Rhodospirillum Molischianum Ferricytochrome C' at 2.5 Angstroms Resolution 1981 UK Biochem.J. BIJOAK 0043 0264-6021 135 751 The Amino Acid Sequence of Cytochrome C' from Alcaligenes Sp. N.C.I.B. 11015 1973 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 IMAGE PLATE 1993-03-20 RIGAKU RAXIS IIC M x-ray 1 1.5418 1.0 1.5418 13575.380 CYTOCHROME C 1 man polymer 618.503 HEME C 1 syn non-polymer 18.015 water 75 nat water no yes (PCA)FAKPEDAVKYRQSALTLMASHFGRMAPVVKGQAPYDAAQIKANVEVLKTLTALPWAAFGAGTEGGDARPEIWSDA AGFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASCKACHDSYRKKK QFAKPEDAVKYRQSALTLMASHFGRMAPVVKGQAPYDAAQIKANVEVLKTLTALPWAAFGAGTEGGDARPEIWSDAAGFK QKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASCKACHDSYRKKK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Achromobacter sample 85698 Achromobacter xylosoxidans 2.86 56.96 entity_poly pdbx_database_status pdbx_struct_mod_residue struct_conn struct_ref_seq_dif atom_site chem_comp entity pdbx_distant_solvent_atoms pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly pdbx_struct_assembly_gen pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn repository Initial release Version format compliance Version format compliance Database references Derived calculations Other Polymer sequence Advisory Atomic model Data collection Derived calculations Non-polymer description Structure summary 1 0 1995-07-31 1 1 2008-03-24 1 2 2011-07-13 2 0 2019-12-25 3 0 2020-01-22 _entity_poly.pdbx_seq_one_letter_code_can _pdbx_database_status.process_site _pdbx_struct_mod_residue.parent_comp_id _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.type_symbol _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.name _chem_comp.pdbx_synonyms _entity.formula_weight _entity.pdbx_description _pdbx_entity_nonpoly.comp_id _pdbx_entity_nonpoly.name _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_label_comp_id Y BNL 1995-05-01 REL REL 1 A O HOH 232 7.43 1 A O HOH 239 6.53 1 A O HOH 240 6.18 HEC HEME C HOH water HEM 128 2 HEC HEC 128 A HOH 200 3 HOH HOH 200 A HOH 201 3 HOH HOH 201 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 217 3 HOH HOH 217 A HOH 218 3 HOH HOH 218 A HOH 219 3 HOH HOH 219 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 224 3 HOH HOH 224 A HOH 225 3 HOH HOH 225 A HOH 226 3 HOH HOH 226 A HOH 227 3 HOH HOH 227 A HOH 228 3 HOH HOH 228 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 231 3 HOH HOH 231 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 234 3 HOH HOH 234 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 237 3 HOH HOH 237 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 243 3 HOH HOH 243 A HOH 244 3 HOH HOH 244 A HOH 245 3 HOH HOH 245 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 249 3 HOH HOH 249 A HOH 250 3 HOH HOH 250 A HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A HOH 253 3 HOH HOH 253 A HOH 254 3 HOH HOH 254 A HOH 255 3 HOH HOH 255 A HOH 256 3 HOH HOH 256 A HOH 257 3 HOH HOH 257 A HOH 258 3 HOH HOH 258 A HOH 259 3 HOH HOH 259 A HOH 260 3 HOH HOH 260 A HOH 261 3 HOH HOH 261 A HOH 262 3 HOH HOH 262 A HOH 263 3 HOH HOH 263 A HOH 264 3 HOH HOH 264 A HOH 265 3 HOH HOH 265 A HOH 266 3 HOH HOH 266 A HOH 267 3 HOH HOH 267 A HOH 268 3 HOH HOH 268 A HOH 269 3 HOH HOH 269 A HOH 270 3 HOH HOH 270 A HOH 271 3 HOH HOH 271 A HOH 272 3 HOH HOH 272 A HOH 273 3 HOH HOH 273 A HOH 274 3 HOH HOH 274 A PCA 1 n 1 PCA 1 A PHE 2 n 2 PHE 2 A ALA 3 n 3 ALA 3 A LYS 4 n 4 LYS 4 A PRO 5 n 5 PRO 5 A GLU 6 n 6 GLU 6 A ASP 7 n 7 ASP 7 A ALA 8 n 8 ALA 8 A VAL 9 n 9 VAL 9 A LYS 10 n 10 LYS 10 A TYR 11 n 11 TYR 11 A ARG 12 n 12 ARG 12 A GLN 13 n 13 GLN 13 A SER 14 n 14 SER 14 A ALA 15 n 15 ALA 15 A LEU 16 n 16 LEU 16 A THR 17 n 17 THR 17 A LEU 18 n 18 LEU 18 A MET 19 n 19 MET 19 A ALA 20 n 20 ALA 20 A SER 21 n 21 SER 21 A HIS 22 n 22 HIS 22 A PHE 23 n 23 PHE 23 A GLY 24 n 24 GLY 24 A ARG 25 n 25 ARG 25 A MET 26 n 26 MET 26 A ALA 27 n 27 ALA 27 A PRO 28 n 28 PRO 28 A VAL 29 n 29 VAL 29 A VAL 30 n 30 VAL 30 A LYS 31 n 31 LYS 31 A GLY 32 n 32 GLY 32 A GLN 33 n 33 GLN 33 A ALA 34 n 34 ALA 34 A PRO 35 n 35 PRO 35 A TYR 36 n 36 TYR 36 A ASP 37 n 37 ASP 37 A ALA 38 n 38 ALA 38 A ALA 39 n 39 ALA 39 A GLN 40 n 40 GLN 40 A ILE 41 n 41 ILE 41 A LYS 42 n 42 LYS 42 A ALA 43 n 43 ALA 43 A ASN 44 n 44 ASN 44 A VAL 45 n 45 VAL 45 A GLU 46 n 46 GLU 46 A VAL 47 n 47 VAL 47 A LEU 48 n 48 LEU 48 A LYS 49 n 49 LYS 49 A THR 50 n 50 THR 50 A LEU 51 n 51 LEU 51 A THR 52 n 52 THR 52 A ALA 53 n 53 ALA 53 A LEU 54 n 54 LEU 54 A PRO 55 n 55 PRO 55 A TRP 56 n 56 TRP 56 A ALA 57 n 57 ALA 57 A ALA 58 n 58 ALA 58 A PHE 59 n 59 PHE 59 A GLY 60 n 60 GLY 60 A ALA 61 n 61 ALA 61 A GLY 62 n 62 GLY 62 A THR 63 n 63 THR 63 A GLU 64 n 64 GLU 64 A GLY 65 n 65 GLY 65 A GLY 66 n 66 GLY 66 A ASP 67 n 67 ASP 67 A ALA 68 n 68 ALA 68 A ARG 69 n 69 ARG 69 A PRO 70 n 70 PRO 70 A GLU 71 n 71 GLU 71 A ILE 72 n 72 ILE 72 A TRP 73 n 73 TRP 73 A SER 74 n 74 SER 74 A ASP 75 n 75 ASP 75 A ALA 76 n 76 ALA 76 A ALA 77 n 77 ALA 77 A GLY 78 n 78 GLY 78 A PHE 79 n 79 PHE 79 A LYS 80 n 80 LYS 80 A GLN 81 n 81 GLN 81 A LYS 82 n 82 LYS 82 A GLN 83 n 83 GLN 83 A GLN 84 n 84 GLN 84 A ALA 85 n 85 ALA 85 A PHE 86 n 86 PHE 86 A GLN 87 n 87 GLN 87 A ASP 88 n 88 ASP 88 A ASN 89 n 89 ASN 89 A ILE 90 n 90 ILE 90 A VAL 91 n 91 VAL 91 A LYS 92 n 92 LYS 92 A LEU 93 n 93 LEU 93 A SER 94 n 94 SER 94 A ALA 95 n 95 ALA 95 A ALA 96 n 96 ALA 96 A ALA 97 n 97 ALA 97 A ASP 98 n 98 ASP 98 A ALA 99 n 99 ALA 99 A GLY 100 n 100 GLY 100 A ASP 101 n 101 ASP 101 A LEU 102 n 102 LEU 102 A ASP 103 n 103 ASP 103 A LYS 104 n 104 LYS 104 A LEU 105 n 105 LEU 105 A ARG 106 n 106 ARG 106 A ALA 107 n 107 ALA 107 A ALA 108 n 108 ALA 108 A PHE 109 n 109 PHE 109 A GLY 110 n 110 GLY 110 A ASP 111 n 111 ASP 111 A VAL 112 n 112 VAL 112 A GLY 113 n 113 GLY 113 A ALA 114 n 114 ALA 114 A SER 115 n 115 SER 115 A CYS 116 n 116 CYS 116 A LYS 117 n 117 LYS 117 A ALA 118 n 118 ALA 118 A CYS 119 n 119 CYS 119 A HIS 120 n 120 HIS 120 A ASP 121 n 121 ASP 121 A SER 122 n 122 SER 122 A TYR 123 n 123 TYR 123 A ARG 124 n 124 ARG 124 A LYS 125 n 125 LYS 125 A n 126 126 A n 127 127 A author_defined_assembly 1 monomeric A HIS 120 A NE2 HIS 120 1_555 A HEC 128 B FE HEC 1_555 A HEC 128 B NA HEC 1_555 95.0 A HIS 120 A NE2 HIS 120 1_555 A HEC 128 B FE HEC 1_555 A HEC 128 B NB HEC 1_555 93.5 A HEC 128 B NA HEC 1_555 A HEC 128 B FE HEC 1_555 A HEC 128 B NB HEC 1_555 91.4 A HIS 120 A NE2 HIS 120 1_555 A HEC 128 B FE HEC 1_555 A HEC 128 B NC HEC 1_555 96.2 A HEC 128 B NA HEC 1_555 A HEC 128 B FE HEC 1_555 A HEC 128 B NC HEC 1_555 168.7 A HEC 128 B NB HEC 1_555 A HEC 128 B FE HEC 1_555 A HEC 128 B NC HEC 1_555 88.7 A HIS 120 A NE2 HIS 120 1_555 A HEC 128 B FE HEC 1_555 A HEC 128 B ND HEC 1_555 100.4 A HEC 128 B NA HEC 1_555 A HEC 128 B FE HEC 1_555 A HEC 128 B ND HEC 1_555 89.3 A HEC 128 B NB HEC 1_555 A HEC 128 B FE HEC 1_555 A HEC 128 B ND HEC 1_555 165.9 A HEC 128 B NC HEC 1_555 A HEC 128 B FE HEC 1_555 A HEC 128 B ND HEC 1_555 88.0 A PCA 1 PYROGLUTAMIC ACID A PCA 1 GLN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CD LYS 4 A CD LYS 4 1 Y 1 A CE LYS 4 A CE LYS 4 1 Y 1 A NZ LYS 4 A NZ LYS 4 1 Y 1 A CD LYS 10 A CD LYS 10 1 Y 1 A CE LYS 10 A CE LYS 10 1 Y 1 A NZ LYS 10 A NZ LYS 10 1 Y 1 A CE LYS 31 A CE LYS 31 1 Y 1 A NZ LYS 31 A NZ LYS 31 1 Y 1 A CE LYS 42 A CE LYS 42 1 Y 1 A NZ LYS 42 A NZ LYS 42 1 Y 1 A CG GLU 46 A CG GLU 46 1 Y 1 A CD GLU 46 A CD GLU 46 1 Y 1 A OE1 GLU 46 A OE1 GLU 46 1 Y 1 A OE2 GLU 46 A OE2 GLU 46 1 Y 1 A CE LYS 49 A CE LYS 49 1 Y 1 A NZ LYS 49 A NZ LYS 49 1 Y 1 A CD LYS 80 A CD LYS 80 1 Y 1 A CE LYS 80 A CE LYS 80 1 Y 1 A NZ LYS 80 A NZ LYS 80 1 Y 1 A CG GLN 84 A CG GLN 84 1 Y 1 A CD GLN 84 A CD GLN 84 1 Y 1 A OE1 GLN 84 A OE1 GLN 84 1 Y 1 A NE2 GLN 84 A NE2 GLN 84 1 Y 1 A CE LYS 104 A CE LYS 104 1 Y 1 A NZ LYS 104 A NZ LYS 104 1 Y 1 A CE LYS 117 A CE LYS 117 1 Y 1 A NZ LYS 117 A NZ LYS 117 1 Y 1 A LYS 126 A LYS 126 1 Y 1 A LYS 127 A LYS 127 1 Y 1 5.88 0.90 118.30 124.18 A A A CB CG OD2 ASP ASP ASP 37 37 37 N 1 -6.58 0.90 118.30 111.72 A A A CB CG OD1 ASP ASP ASP 67 67 67 N 1 6.24 0.90 118.30 124.54 A A A CB CG OD2 ASP ASP ASP 67 67 67 N 1 5.84 0.90 118.30 124.14 A A A CB CG OD1 ASP ASP ASP 88 88 88 N 1 -6.26 0.90 118.30 112.04 A A A CB CG OD2 ASP ASP ASP 88 88 88 N 1 -5.46 0.90 118.30 112.84 A A A CB CG OD2 ASP ASP ASP 98 98 98 N 1 -5.43 0.90 118.30 112.87 A A A CB CG OD1 ASP ASP ASP 101 101 101 N 1 -6.01 0.90 118.30 112.29 A A A CB CG OD2 ASP ASP ASP 121 121 121 N 1 A A CD OE2 GLU GLU 6 6 0.071 0.011 1.252 1.323 N 1 A A CD OE2 GLU GLU 64 64 0.068 0.011 1.252 1.320 N 1 A ASP 75 -118.82 53.35 0.167 2.15 20.0 8220 1 0.0 2.15 20.0 75 1028 43 0 910 1CGN 0.032 1 7.4 refinement TNT 5C data reduction SUPPLIED SOFTWARE MOLECULE: CYTOCHROME C' CYTOCHROME C' 1 N N 2 N N 3 N N SYMMETRY THE CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS PRESENTED BELOW GENERATE THE SUBUNITS OF THE POLYMERIC MOLECULE. APPLIED TO RESIDUES: PCA 1 .. HEM 128 SYMMETRY OPERATION TO GENERATE THE SECOND MOLECULE OF THE DIMERIC PARTICLE SYMMETRY1 1 -1.000000 0.000000 0.000000 0.00000 SYMMETRY2 1 0.000000 1.000000 0.000000 0.00000 SYMMETRY3 1 0.000000 0.000000 -1.000000 90.20000 A PRO 5 A PRO 5 HELX_P A VAL 30 A VAL 30 1 1 26 A ALA 38 A ALA 38 HELX_P A ALA 58 A ALA 58 1 2 21 A PRO 70 A PRO 70 HELX_P A SER 74 A SER 74 5 3 5 A ALA 76 A ALA 76 HELX_P A ALA 99 A ALA 99 1 4 24 A LEU 102 A LEU 102 HELX_P A TYR 123 A TYR 123 1 5 22 covale 1.315 both A PCA 1 A C PCA 1 1_555 A PHE 2 A N PHE 2 1_555 covale 1.810 none A CYS 116 A SG CYS 116 1_555 A HEC 128 B CAB HEC 1_555 covale 1.839 none A CYS 119 A SG CYS 119 1_555 A HEC 128 B CAC HEC 1_555 metalc 2.006 A HIS 120 A NE2 HIS 120 1_555 A HEC 128 B FE HEC 1_555 ELECTRON TRANSPORT (CYTOCHROME) ELECTRON TRANSPORT (CYTOCHROME) CYCP_ALCXX UNP 1 1 P00138 QFAKPEDAVKYRQSALTLMASHFGRMTPVVKGQAPYDAAQIKANVEVLKTLSALPWAAFGPGTEGGDARPEIWSDAASFK QKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASCKACHDAYRKKK 2 127 1CGN 2 127 P00138 A 1 2 127 1 THR conflict ALA 27 1CGN A P00138 UNP 27 27 1 SER conflict THR 52 1CGN A P00138 UNP 52 52 1 PRO conflict ALA 61 1CGN A P00138 UNP 61 61 1 SER conflict GLY 78 1CGN A P00138 UNP 78 78 1 ALA conflict SER 122 1CGN A P00138 UNP 122 122 BINDING SITE FOR RESIDUE HEM A 128 Software 17 A ARG 12 A ARG 12 17 1_555 A GLN 13 A GLN 13 17 1_555 A LEU 16 A LEU 16 17 1_555 A THR 17 A THR 17 17 1_555 A ALA 20 A ALA 20 17 1_555 A TRP 56 A TRP 56 17 1_555 A ASP 67 A ASP 67 17 1_555 A ILE 72 A ILE 72 17 1_555 A GLN 83 A GLN 83 17 1_555 A PHE 86 A PHE 86 17 1_555 A CYS 116 A CYS 116 17 1_555 A CYS 119 A CYS 119 17 1_555 A HIS 120 A HIS 120 17 1_555 A TYR 123 A TYR 123 17 1_555 A ARG 124 A ARG 124 17 1_555 A HOH 214 C HOH 17 1_555 A HOH 241 C HOH 17 1_555 179 P 65 2 2