0.018720
0.000000
0.006493
0.000000
0.029206
0.000000
0.000000
0.000000
0.018814
0.00000
0.00000
0.00000
Meinke, G.
Sigler, P.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
109.13
90.00
53.420
34.240
56.260
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
R
C
N
452
N
O
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
N
475
N
O
N
476
N
O
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
N
C
N
493
N
C
N
494
N
C
N
495
N
O
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
doub
N
473
N
sing
Y
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
doub
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
6
471
477
10.1038/8276
10331876
DNA-binding mechanism of the monomeric orphan nuclear receptor NGFI-B.
1999
10.2210/pdb1cit/pdb
pdb_00001cit
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
MIRROR
IMAGE PLATE
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
X12B
NSLS
0.98
SYNCHROTRON
NSLS BEAMLINE X12B
4932.218
DNA (5'-D(*CP*CP*GP*AP*AP*AP*AP*GP*GP*TP*CP*AP*TP*GP*CP*G)-3')
1
syn
polymer
4865.152
DNA (5'-D(*CP*GP*CP*AP*TP*GP*AP*CP*CP*TP*TP*TP*TP*CP*GP*G)-3')
1
syn
polymer
10098.962
PROTEIN (ORPHAN NUCLEAR RECEPTOR NGFI-B)
DNA-BINDING DOMAIN AND C-TERMINAL EXTENSION
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
18.015
water
38
nat
water
NGFI-B
no
no
(DC)(DC)(DG)(DA)(DA)(DA)(DA)(DG)(DG)(DT)(DC)(DA)(DT)(DG)(DC)(DG)
CCGAAAAGGTCATGCG
B
polydeoxyribonucleotide
no
no
(DC)(DG)(DC)(DA)(DT)(DG)(DA)(DC)(DC)(DT)(DT)(DT)(DT)(DC)(DG)(DG)
CGCATGACCTTTTCGG
C
polydeoxyribonucleotide
no
no
GRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKG
RRGRLPSKP
GRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKG
RRGRLPSKP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
Escherichia
Escherichia coli
sample
NUCLEUS
10116
BRAIN
Rattus norvegicus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PET11A
1
2.4
53.0
7.0
PROTEIN/DNA COMPLEX CRYSTALS WERE GROWN USING THE VAPOR DIFFUSION METHOD AT 27
DEGREES CELSIUS. THE RESEVOIR CONTAINS 50 MM MORPHOLINO-SULFONIC ACID PH7.0,
250MM AMMONIUM CHLORIDE, 30 % PEG 4000, 5 MM DTT. THE DROPS CONTAINED A 1:1
RATIO OF PROTEIN-COMPLEX TO RESEVOIR.
-4.819
1
19
B
402
C
434
-9.845
B_DC402:DG434_C
1
-7.527
-1.633
0.601
-0.171
3.477
1
19
B
403
C
433
-1.262
B_DC403:DG433_C
2
-11.654
-0.598
0.144
-0.451
-7.130
1
19
B
404
C
432
0.691
B_DG404:DC432_C
3
-8.128
-0.106
-0.036
-0.104
-3.355
1
20
B
405
C
431
-5.251
B_DA405:DT431_C
4
-8.947
0.285
-0.158
-0.003
2.333
1
20
B
406
C
430
2.157
B_DA406:DT430_C
5
-14.985
0.703
0.087
-0.331
7.823
1
20
B
407
C
429
-0.199
B_DA407:DT429_C
6
-10.155
0.455
-0.069
-0.315
-3.434
1
20
B
408
C
428
-6.296
B_DA408:DT428_C
7
-3.622
-0.487
-0.296
-0.152
3.274
1
19
B
409
C
427
-1.369
B_DG409:DC427_C
8
-0.734
0.461
0.276
-0.195
-11.512
1
19
B
410
C
426
0.740
B_DG410:DC426_C
9
-8.812
-0.075
-0.185
-0.120
-8.856
B
411
C
425
10.781
B_DT411:DA425_C
10
-9.643
-0.436
0.651
0.130
0.094
1
B
412
C
424
13.135
B_DC412:DG424_C
11
2.593
0.367
0.098
0.419
5.626
B
413
C
423
6.868
B_DA413:DT423_C
12
-18.265
1.039
0.464
0.284
2.033
1
20
B
414
C
422
3.461
B_DT414:DA422_C
13
-9.356
-0.060
0.164
-0.115
6.622
1
19
B
415
C
421
-6.593
B_DG415:DC421_C
14
-9.604
0.721
0.335
-0.155
11.385
1
B
416
C
420
-17.562
B_DC416:DG420_C
15
-6.926
-1.528
-0.335
-0.164
0.000
1
19
B
417
C
419
-9.335
B_DG417:DC419_C
16
-12.866
1.132
0.565
-0.433
3.342
41.037
B
B
402
403
0.860
C
C
434
433
3.236
0.600
0.902
0.277
BB_DC402DC403:DG433DG434_CC
1
6.811
-9.757
40.487
0.329
-0.536
3.642
42.271
B
B
403
404
2.967
C
C
433
432
3.542
2.138
0.772
1.586
BB_DC403DG404:DC432DG433_CC
2
1.733
-2.404
42.186
1.959
-0.875
3.235
41.332
B
B
404
405
-3.181
C
C
432
431
3.224
-2.243
-1.122
0.848
BB_DG404DA405:DT431DC432_CC
3
-2.469
3.502
41.203
1.439
1.328
3.099
32.752
B
B
405
406
14.017
C
C
431
430
3.282
7.832
0.428
-0.393
BB_DA405DA406:DT430DT431_CC
4
-0.090
0.161
31.827
-2.033
-0.774
2.872
28.677
B
B
406
407
28.512
C
C
430
429
3.311
13.574
0.255
-0.094
BB_DA406DA407:DT429DT430_CC
5
-1.225
2.573
25.291
-3.276
-0.794
3.327
35.898
B
B
407
408
-0.251
C
C
429
428
3.261
-0.154
-0.861
-0.380
BB_DA407DA408:DT428DT429_CC
6
-3.347
5.437
35.746
-0.594
0.914
3.269
39.880
B
B
408
409
-1.401
C
C
428
427
3.317
-0.954
0.411
-0.413
BB_DA408DG409:DC427DT428_CC
7
-4.085
5.999
39.667
-0.495
-1.078
3.307
36.385
B
B
409
410
6.086
C
C
427
426
3.551
3.781
-0.385
-1.357
BB_DG409DG410:DC426DC427_CC
8
5.287
-8.510
35.819
-2.729
1.394
3.157
26.489
B
B
410
411
3.025
C
C
426
425
3.251
1.381
0.142
-0.815
BB_DG410DT411:DA425DC426_CC
9
-3.587
7.854
26.214
-2.140
-1.244
3.275
39.703
B
B
411
412
0.399
C
C
425
424
3.162
0.270
1.253
1.713
BB_DT411DC412:DG424DA425_CC
10
3.826
-5.642
39.524
2.491
-1.405
3.646
41.304
B
B
412
413
3.064
C
C
424
423
3.458
2.156
-1.336
1.485
BB_DC412DA413:DT423DG424_CC
11
-4.379
6.221
41.027
1.853
1.381
3.220
28.273
B
B
413
414
3.957
C
C
423
422
3.267
1.930
0.091
-0.594
BB_DA413DT414:DA422DT423_CC
12
1.568
-3.215
28.165
-1.662
0.175
3.219
38.024
B
B
414
415
6.536
C
C
422
421
3.194
4.250
0.173
0.376
BB_DT414DG415:DC421DA422_CC
13
1.162
-1.788
37.777
0.046
-0.120
3.129
23.677
B
B
415
416
-2.956
C
C
421
420
3.161
-1.212
-0.993
0.170
BB_DG415DC416:DG420DC421_CC
14
0.452
-1.103
23.642
0.801
2.566
3.467
49.824
B
B
416
417
-4.677
C
C
420
419
3.599
-3.933
1.123
0.301
BB_DC416DG417:DC419DG420_CC
15
-4.200
4.995
49.512
0.668
-1.665
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
1999-05-03
1
1
2007-10-16
1
2
2011-07-13
1
3
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
RCSB
1999-04-05
REL
REL
ZN
ZINC ION
HOH
water
1HCQ
PDB ENTRY 1HCQ
PDB
experimental model
ZN
398
4
ZN
ZN
398
A
ZN
399
4
ZN
ZN
399
A
WAT
8
5
HOH
HOH
8
B
WAT
13
5
HOH
HOH
13
B
WAT
15
5
HOH
HOH
15
B
WAT
16
5
HOH
HOH
16
B
WAT
18
5
HOH
HOH
18
B
WAT
19
5
HOH
HOH
19
B
WAT
26
5
HOH
HOH
26
B
WAT
29
5
HOH
HOH
29
B
WAT
33
5
HOH
HOH
33
B
WAT
38
5
HOH
HOH
38
B
WAT
12
5
HOH
HOH
12
C
WAT
17
5
HOH
HOH
17
C
WAT
21
5
HOH
HOH
21
C
WAT
25
5
HOH
HOH
25
C
WAT
31
5
HOH
HOH
31
C
WAT
1
5
HOH
HOH
1
A
WAT
2
5
HOH
HOH
2
A
WAT
3
5
HOH
HOH
3
A
WAT
4
5
HOH
HOH
4
A
WAT
5
5
HOH
HOH
5
A
WAT
6
5
HOH
HOH
6
A
WAT
7
5
HOH
HOH
7
A
WAT
9
5
HOH
HOH
9
A
WAT
10
5
HOH
HOH
10
A
WAT
11
5
HOH
HOH
11
A
WAT
14
5
HOH
HOH
14
A
WAT
20
5
HOH
HOH
20
A
WAT
22
5
HOH
HOH
22
A
WAT
23
5
HOH
HOH
23
A
WAT
24
5
HOH
HOH
24
A
WAT
27
5
HOH
HOH
27
A
WAT
28
5
HOH
HOH
28
A
WAT
30
5
HOH
HOH
30
A
WAT
32
5
HOH
HOH
32
A
WAT
34
5
HOH
HOH
34
A
WAT
35
5
HOH
HOH
35
A
WAT
36
5
HOH
HOH
36
A
WAT
37
5
HOH
HOH
37
A
C
402
n
1
DC
402
B
C
403
n
2
DC
403
B
G
404
n
3
DG
404
B
A
405
n
4
DA
405
B
A
406
n
5
DA
406
B
A
407
n
6
DA
407
B
A
408
n
7
DA
408
B
G
409
n
8
DG
409
B
G
410
n
9
DG
410
B
T
411
n
10
DT
411
B
C
412
n
11
DC
412
B
A
413
n
12
DA
413
B
T
414
n
13
DT
414
B
G
415
n
14
DG
415
B
C
416
n
15
DC
416
B
G
417
n
16
DG
417
B
C
419
n
1
DC
419
C
G
420
n
2
DG
420
C
C
421
n
3
DC
421
C
A
422
n
4
DA
422
C
T
423
n
5
DT
423
C
G
424
n
6
DG
424
C
A
425
n
7
DA
425
C
C
426
n
8
DC
426
C
C
427
n
9
DC
427
C
T
428
n
10
DT
428
C
T
429
n
11
DT
429
C
T
430
n
12
DT
430
C
T
431
n
13
DT
431
C
C
432
n
14
DC
432
C
G
433
n
15
DG
433
C
G
434
n
16
DG
434
C
GLY
230
n
1
GLY
230
A
ARG
231
n
2
ARG
231
A
CYS
232
n
3
CYS
232
A
ALA
233
n
4
ALA
233
A
VAL
234
n
5
VAL
234
A
CYS
235
n
6
CYS
235
A
GLY
236
n
7
GLY
236
A
ASP
237
n
8
ASP
237
A
ASN
238
n
9
ASN
238
A
ALA
239
n
10
ALA
239
A
SER
240
n
11
SER
240
A
CYS
241
n
12
CYS
241
A
GLN
242
n
13
GLN
242
A
HIS
243
n
14
HIS
243
A
TYR
244
n
15
TYR
244
A
GLY
245
n
16
GLY
245
A
VAL
246
n
17
VAL
246
A
ARG
247
n
18
ARG
247
A
THR
248
n
19
THR
248
A
CYS
249
n
20
CYS
249
A
GLU
250
n
21
GLU
250
A
GLY
251
n
22
GLY
251
A
CYS
252
n
23
CYS
252
A
LYS
253
n
24
LYS
253
A
GLY
254
n
25
GLY
254
A
PHE
255
n
26
PHE
255
A
PHE
256
n
27
PHE
256
A
LYS
257
n
28
LYS
257
A
ARG
258
n
29
ARG
258
A
THR
259
n
30
THR
259
A
VAL
260
n
31
VAL
260
A
GLN
261
n
32
GLN
261
A
LYS
262
n
33
LYS
262
A
SER
263
n
34
SER
263
A
ALA
264
n
35
ALA
264
A
LYS
265
n
36
LYS
265
A
TYR
266
n
37
TYR
266
A
ILE
267
n
38
ILE
267
A
CYS
268
n
39
CYS
268
A
LEU
269
n
40
LEU
269
A
ALA
270
n
41
ALA
270
A
ASN
271
n
42
ASN
271
A
LYS
272
n
43
LYS
272
A
ASP
273
n
44
ASP
273
A
CYS
274
n
45
CYS
274
A
PRO
275
n
46
PRO
275
A
VAL
276
n
47
VAL
276
A
ASP
277
n
48
ASP
277
A
LYS
278
n
49
LYS
278
A
ARG
279
n
50
ARG
279
A
ARG
280
n
51
ARG
280
A
ARG
281
n
52
ARG
281
A
ASN
282
n
53
ASN
282
A
ARG
283
n
54
ARG
283
A
CYS
284
n
55
CYS
284
A
GLN
285
n
56
GLN
285
A
PHE
286
n
57
PHE
286
A
CYS
287
n
58
CYS
287
A
ARG
288
n
59
ARG
288
A
PHE
289
n
60
PHE
289
A
GLN
290
n
61
GLN
290
A
LYS
291
n
62
LYS
291
A
CYS
292
n
63
CYS
292
A
LEU
293
n
64
LEU
293
A
ALA
294
n
65
ALA
294
A
VAL
295
n
66
VAL
295
A
GLY
296
n
67
GLY
296
A
MET
297
n
68
MET
297
A
VAL
298
n
69
VAL
298
A
LYS
299
n
70
LYS
299
A
GLU
300
n
71
GLU
300
A
VAL
301
n
72
VAL
301
A
VAL
302
n
73
VAL
302
A
ARG
303
n
74
ARG
303
A
THR
304
n
75
THR
304
A
ASP
305
n
76
ASP
305
A
SER
306
n
77
SER
306
A
LEU
307
n
78
LEU
307
A
LYS
308
n
79
LYS
308
A
GLY
309
n
80
GLY
309
A
ARG
310
n
81
ARG
310
A
ARG
311
n
82
ARG
311
A
GLY
312
n
83
GLY
312
A
ARG
313
n
84
ARG
313
A
LEU
314
n
85
LEU
314
A
PRO
315
n
86
PRO
315
A
SER
316
n
87
SER
316
A
LYS
317
n
88
LYS
317
A
PRO
318
n
89
PRO
318
A
author_defined_assembly
3
trimeric
A
CYS
232
C
SG
CYS
3
1_555
A
ZN
398
D
ZN
ZN
1_555
A
CYS
235
C
SG
CYS
6
1_555
109.6
A
CYS
232
C
SG
CYS
3
1_555
A
ZN
398
D
ZN
ZN
1_555
A
CYS
249
C
SG
CYS
20
1_555
99.9
A
CYS
235
C
SG
CYS
6
1_555
A
ZN
398
D
ZN
ZN
1_555
A
CYS
249
C
SG
CYS
20
1_555
106.3
A
CYS
232
C
SG
CYS
3
1_555
A
ZN
398
D
ZN
ZN
1_555
A
CYS
252
C
SG
CYS
23
1_555
105.7
A
CYS
235
C
SG
CYS
6
1_555
A
ZN
398
D
ZN
ZN
1_555
A
CYS
252
C
SG
CYS
23
1_555
127.1
A
CYS
249
C
SG
CYS
20
1_555
A
ZN
398
D
ZN
ZN
1_555
A
CYS
252
C
SG
CYS
23
1_555
104.7
A
CYS
268
C
SG
CYS
39
1_555
A
ZN
399
E
ZN
ZN
1_555
A
CYS
274
C
SG
CYS
45
1_555
103.8
A
CYS
268
C
SG
CYS
39
1_555
A
ZN
399
E
ZN
ZN
1_555
A
CYS
284
C
SG
CYS
55
1_555
128.4
A
CYS
274
C
SG
CYS
45
1_555
A
ZN
399
E
ZN
ZN
1_555
A
CYS
284
C
SG
CYS
55
1_555
110.3
A
CYS
268
C
SG
CYS
39
1_555
A
ZN
399
E
ZN
ZN
1_555
A
CYS
287
C
SG
CYS
58
1_555
112.3
A
CYS
274
C
SG
CYS
45
1_555
A
ZN
399
E
ZN
ZN
1_555
A
CYS
287
C
SG
CYS
58
1_555
95.3
A
CYS
284
C
SG
CYS
55
1_555
A
ZN
399
E
ZN
ZN
1_555
A
CYS
287
C
SG
CYS
58
1_555
101.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
CYS
241
C
O
CYS
12
A
N
THR
248
C
N
THR
19
1
B
O5'
DG
417
A
O5'
DG
16
0
Y
1
B
C5'
DG
417
A
C5'
DG
16
0
Y
1
B
C4'
DG
417
A
C4'
DG
16
0
Y
1
B
O4'
DG
417
A
O4'
DG
16
0
Y
1
B
C3'
DG
417
A
C3'
DG
16
0
Y
1
B
C2'
DG
417
A
C2'
DG
16
0
Y
1
B
C1'
DG
417
A
C1'
DG
16
0
Y
1
C
O5'
DC
419
B
O5'
DC
1
0
Y
1
C
C5'
DC
419
B
C5'
DC
1
0
Y
1
C
C4'
DC
419
B
C4'
DC
1
0
Y
1
C
O4'
DC
419
B
O4'
DC
1
0
Y
1
C
C3'
DC
419
B
C3'
DC
1
0
Y
1
C
C2'
DC
419
B
C2'
DC
1
0
Y
1
C
C1'
DC
419
B
C1'
DC
1
0
Y
1
A
CG
LYS
265
C
CG
LYS
36
1
Y
1
A
CD
LYS
265
C
CD
LYS
36
1
Y
1
A
CE
LYS
265
C
CE
LYS
36
1
Y
1
A
NZ
LYS
265
C
NZ
LYS
36
1
Y
1
A
CG
LYS
317
C
CG
LYS
88
1
Y
1
A
CD
LYS
317
C
CD
LYS
88
1
Y
1
A
CE
LYS
317
C
CE
LYS
88
1
Y
1
A
NZ
LYS
317
C
NZ
LYS
88
1
Y
1
A
A
O
O
GLY
HOH
251
9
2.17
1
B
DA
408
0.071
SIDE CHAIN
1
A
TYR
244
0.063
SIDE CHAIN
1
A
VAL
234
-107.49
-62.52
1
A
ASP
237
-57.83
-176.92
1
A
ARG
247
-56.84
103.27
1
A
LYS
253
-46.35
-70.48
1
A
ALA
270
-83.30
-122.22
1
A
ASP
273
-152.59
25.65
1
A
ASP
305
48.86
-132.36
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
32.8
0.0
0.0
0.0
0.0
0.0
0.0
BULK SOLVENT MODEL USED
0.295
0.012
0.219
2.7
18.0
568
5200
10.9
95.0
RANDOM
401381.9
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1HCQ
FLAT MODEL
27.0
0.29
0.45
0.35
5.0
0.51
0.51
2.7
18.0
38
1380
2
650
690
0.016
2.4
21.6
1.78
3.06
1.5
4.83
2.0
4.36
2.0
6.34
2.5
0.42
0.04
0.35
2.87
97
787
6
11.0
97.0
80.3
2.7
18.0
1CIT
5200
3.0
0.073
1
14.5
2.3
95.0
2.7
2.8
3.1
0.368
96.9
data reduction
DENZO
data scaling
SCALEPACK
model building
X-PLOR
phasing
MLPHARE
refinement
CNS
0.5
phasing
X-PLOR
DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
GLU
250
C
GLU
21
HELX_P
A
LYS
262
C
LYS
33
1
1
13
A
GLN
285
C
GLN
56
HELX_P
A
ALA
294
C
ALA
65
1
2
10
A
LYS
299
C
LYS
70
HELX_P
A
VAL
301
C
VAL
72
5
3
3
A
ASP
273
C
ASP
44
HELX_P
A
LEU
307
C
LEU
78
5
4
35
metalc
2.713
A
CYS
232
C
SG
CYS
3
1_555
A
ZN
398
D
ZN
ZN
1_555
metalc
2.645
A
CYS
235
C
SG
CYS
6
1_555
A
ZN
398
D
ZN
ZN
1_555
metalc
2.629
A
CYS
249
C
SG
CYS
20
1_555
A
ZN
398
D
ZN
ZN
1_555
metalc
2.518
A
CYS
252
C
SG
CYS
23
1_555
A
ZN
398
D
ZN
ZN
1_555
metalc
2.571
A
CYS
268
C
SG
CYS
39
1_555
A
ZN
399
E
ZN
ZN
1_555
metalc
2.562
A
CYS
274
C
SG
CYS
45
1_555
A
ZN
399
E
ZN
ZN
1_555
metalc
2.609
A
CYS
284
C
SG
CYS
55
1_555
A
ZN
399
E
ZN
ZN
1_555
metalc
2.564
A
CYS
287
C
SG
CYS
58
1_555
A
ZN
399
E
ZN
ZN
1_555
hydrog
WATSON-CRICK
B
DC
402
A
N3
DC
1
1_555
C
DG
434
B
N1
DG
16
1_555
hydrog
WATSON-CRICK
B
DC
402
A
N4
DC
1
1_555
C
DG
434
B
O6
DG
16
1_555
hydrog
WATSON-CRICK
B
DC
402
A
O2
DC
1
1_555
C
DG
434
B
N2
DG
16
1_555
hydrog
WATSON-CRICK
B
DC
403
A
N3
DC
2
1_555
C
DG
433
B
N1
DG
15
1_555
hydrog
WATSON-CRICK
B
DC
403
A
N4
DC
2
1_555
C
DG
433
B
O6
DG
15
1_555
hydrog
WATSON-CRICK
B
DC
403
A
O2
DC
2
1_555
C
DG
433
B
N2
DG
15
1_555
hydrog
WATSON-CRICK
B
DG
404
A
N1
DG
3
1_555
C
DC
432
B
N3
DC
14
1_555
hydrog
WATSON-CRICK
B
DG
404
A
N2
DG
3
1_555
C
DC
432
B
O2
DC
14
1_555
hydrog
WATSON-CRICK
B
DG
404
A
O6
DG
3
1_555
C
DC
432
B
N4
DC
14
1_555
hydrog
WATSON-CRICK
B
DA
405
A
N1
DA
4
1_555
C
DT
431
B
N3
DT
13
1_555
hydrog
WATSON-CRICK
B
DA
405
A
N6
DA
4
1_555
C
DT
431
B
O4
DT
13
1_555
hydrog
WATSON-CRICK
B
DA
406
A
N1
DA
5
1_555
C
DT
430
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
B
DA
406
A
N6
DA
5
1_555
C
DT
430
B
O4
DT
12
1_555
hydrog
WATSON-CRICK
B
DA
407
A
N1
DA
6
1_555
C
DT
429
B
N3
DT
11
1_555
hydrog
WATSON-CRICK
B
DA
407
A
N6
DA
6
1_555
C
DT
429
B
O4
DT
11
1_555
hydrog
WATSON-CRICK
B
DA
408
A
N1
DA
7
1_555
C
DT
428
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
B
DA
408
A
N6
DA
7
1_555
C
DT
428
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
B
DG
409
A
N1
DG
8
1_555
C
DC
427
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
409
A
N2
DG
8
1_555
C
DC
427
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
409
A
O6
DG
8
1_555
C
DC
427
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
410
A
N1
DG
9
1_555
C
DC
426
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
410
A
N2
DG
9
1_555
C
DC
426
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
410
A
O6
DG
9
1_555
C
DC
426
B
N4
DC
8
1_555
hydrog
DT-DA PAIR
B
DT
411
A
N3
DT
10
1_555
C
DA
425
B
N1
DA
7
1_555
hydrog
DC-DG PAIR
B
DC
412
A
O2
DC
11
1_555
C
DG
424
B
N2
DG
6
1_555
hydrog
DA-DT PAIR
B
DA
413
A
N1
DA
12
1_555
C
DT
423
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
B
DT
414
A
N3
DT
13
1_555
C
DA
422
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
B
DT
414
A
O4
DT
13
1_555
C
DA
422
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
B
DG
415
A
N1
DG
14
1_555
C
DC
421
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
415
A
N2
DG
14
1_555
C
DC
421
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
415
A
O6
DG
14
1_555
C
DC
421
B
N4
DC
3
1_555
hydrog
DC-DG PAIR
B
DC
416
A
N4
DC
15
1_555
C
DG
420
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
B
DG
417
A
N1
DG
16
1_555
C
DC
419
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
B
DG
417
A
N2
DG
16
1_555
C
DC
419
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
B
DG
417
A
O6
DG
16
1_555
C
DC
419
B
N4
DC
1
1_555
TRANSCRIPTION/DNA
ORPHAN NUCLEAR RECEPTOR, EARLY IMMEDIATE RESPONSE GENE PRODUCT, TRANSCRIPTION FACTOR, MONOMERIC PROTEIN-DNA COMPLEX, MINOR GROOVE INTERACTIONS, PROTEIN/DNA, TRANSCRIPTION-DNA COMPLEX
NR4A1_RAT
UNP
3
P22829
1CIT
PDB
1
1CIT
1CIT
PDB
2
1CIT
268
356
1CIT
230
318
P22829
A
1
1
89
402
417
1CIT
402
417
1CIT
B
2
1
16
419
434
1CIT
419
434
1CIT
C
3
1
16
2
anti-parallel
A
CYS
241
C
CYS
12
A
HIS
243
C
HIS
14
A
VAL
246
C
VAL
17
A
THR
248
C
THR
19
ZINC COORDINATED BY 4 CYSTEINES
Author
5
ZINC COORDINATED BY 4 CYSTEINES
Author
5
BINDING SITE FOR RESIDUE ZN A 398
A
ZN
398
Software
4
BINDING SITE FOR RESIDUE ZN A 399
A
ZN
399
Software
4
A
ZN
398
D
ZN
5
1_555
A
CYS
232
C
CYS
3
5
1_555
A
CYS
235
C
CYS
6
5
1_555
A
CYS
249
C
CYS
20
5
1_555
A
CYS
252
C
CYS
23
5
1_555
A
ZN
399
E
ZN
5
1_555
A
CYS
268
C
CYS
39
5
1_555
A
CYS
274
C
CYS
45
5
1_555
A
CYS
284
C
CYS
55
5
1_555
A
CYS
287
C
CYS
58
5
1_555
A
CYS
232
C
CYS
3
4
1_555
A
CYS
235
C
CYS
6
4
1_555
A
CYS
249
C
CYS
20
4
1_555
A
CYS
252
C
CYS
23
4
1_555
A
CYS
268
C
CYS
39
4
1_555
A
CYS
274
C
CYS
45
4
1_555
A
CYS
284
C
CYS
55
4
1_555
A
CYS
287
C
CYS
58
4
1_555
4
P 1 21 1