0.018720 0.000000 0.006493 0.000000 0.029206 0.000000 0.000000 0.000000 0.018814 0.00000 0.00000 0.00000 Meinke, G. Sigler, P.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 109.13 90.00 53.420 34.240 56.260 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N O N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 R C N 452 N O N 453 N C N 454 N O N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N N N 465 S C N 466 N C N 467 N O N 468 N C Y 469 N C Y 470 N C Y 471 N C Y 472 N C Y 473 N C Y 474 N C N 475 N O N 476 N O N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N N N 489 S C N 490 N C N 491 N O N 492 N C N 493 N C N 494 N C N 495 N O N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub N 471 N sing Y 472 N doub N 473 N sing Y 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing US Nat.Struct.Biol. NSBIEW 2024 1072-8368 6 471 477 10.1038/8276 10331876 DNA-binding mechanism of the monomeric orphan nuclear receptor NGFI-B. 1999 10.2210/pdb1cit/pdb pdb_00001cit 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 MIRROR IMAGE PLATE MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.98 1.0 X12B NSLS 0.98 SYNCHROTRON NSLS BEAMLINE X12B 4932.218 DNA (5'-D(*CP*CP*GP*AP*AP*AP*AP*GP*GP*TP*CP*AP*TP*GP*CP*G)-3') 1 syn polymer 4865.152 DNA (5'-D(*CP*GP*CP*AP*TP*GP*AP*CP*CP*TP*TP*TP*TP*CP*GP*G)-3') 1 syn polymer 10098.962 PROTEIN (ORPHAN NUCLEAR RECEPTOR NGFI-B) DNA-BINDING DOMAIN AND C-TERMINAL EXTENSION 1 man polymer 65.409 ZINC ION 2 syn non-polymer 18.015 water 38 nat water NGFI-B no no (DC)(DC)(DG)(DA)(DA)(DA)(DA)(DG)(DG)(DT)(DC)(DA)(DT)(DG)(DC)(DG) CCGAAAAGGTCATGCG B polydeoxyribonucleotide no no (DC)(DG)(DC)(DA)(DT)(DG)(DA)(DC)(DC)(DT)(DT)(DT)(DT)(DC)(DG)(DG) CGCATGACCTTTTCGG C polydeoxyribonucleotide no no GRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKG RRGRLPSKP GRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKG RRGRLPSKP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Norway rat Rattus Escherichia Escherichia coli sample NUCLEUS 10116 BRAIN Rattus norvegicus 469008 Escherichia coli BL21(DE3) BL21(DE3) PET11A 1 2.4 53.0 7.0 PROTEIN/DNA COMPLEX CRYSTALS WERE GROWN USING THE VAPOR DIFFUSION METHOD AT 27 DEGREES CELSIUS. THE RESEVOIR CONTAINS 50 MM MORPHOLINO-SULFONIC ACID PH7.0, 250MM AMMONIUM CHLORIDE, 30 % PEG 4000, 5 MM DTT. THE DROPS CONTAINED A 1:1 RATIO OF PROTEIN-COMPLEX TO RESEVOIR. -4.819 1 19 B 402 C 434 -9.845 B_DC402:DG434_C 1 -7.527 -1.633 0.601 -0.171 3.477 1 19 B 403 C 433 -1.262 B_DC403:DG433_C 2 -11.654 -0.598 0.144 -0.451 -7.130 1 19 B 404 C 432 0.691 B_DG404:DC432_C 3 -8.128 -0.106 -0.036 -0.104 -3.355 1 20 B 405 C 431 -5.251 B_DA405:DT431_C 4 -8.947 0.285 -0.158 -0.003 2.333 1 20 B 406 C 430 2.157 B_DA406:DT430_C 5 -14.985 0.703 0.087 -0.331 7.823 1 20 B 407 C 429 -0.199 B_DA407:DT429_C 6 -10.155 0.455 -0.069 -0.315 -3.434 1 20 B 408 C 428 -6.296 B_DA408:DT428_C 7 -3.622 -0.487 -0.296 -0.152 3.274 1 19 B 409 C 427 -1.369 B_DG409:DC427_C 8 -0.734 0.461 0.276 -0.195 -11.512 1 19 B 410 C 426 0.740 B_DG410:DC426_C 9 -8.812 -0.075 -0.185 -0.120 -8.856 B 411 C 425 10.781 B_DT411:DA425_C 10 -9.643 -0.436 0.651 0.130 0.094 1 B 412 C 424 13.135 B_DC412:DG424_C 11 2.593 0.367 0.098 0.419 5.626 B 413 C 423 6.868 B_DA413:DT423_C 12 -18.265 1.039 0.464 0.284 2.033 1 20 B 414 C 422 3.461 B_DT414:DA422_C 13 -9.356 -0.060 0.164 -0.115 6.622 1 19 B 415 C 421 -6.593 B_DG415:DC421_C 14 -9.604 0.721 0.335 -0.155 11.385 1 B 416 C 420 -17.562 B_DC416:DG420_C 15 -6.926 -1.528 -0.335 -0.164 0.000 1 19 B 417 C 419 -9.335 B_DG417:DC419_C 16 -12.866 1.132 0.565 -0.433 3.342 41.037 B B 402 403 0.860 C C 434 433 3.236 0.600 0.902 0.277 BB_DC402DC403:DG433DG434_CC 1 6.811 -9.757 40.487 0.329 -0.536 3.642 42.271 B B 403 404 2.967 C C 433 432 3.542 2.138 0.772 1.586 BB_DC403DG404:DC432DG433_CC 2 1.733 -2.404 42.186 1.959 -0.875 3.235 41.332 B B 404 405 -3.181 C C 432 431 3.224 -2.243 -1.122 0.848 BB_DG404DA405:DT431DC432_CC 3 -2.469 3.502 41.203 1.439 1.328 3.099 32.752 B B 405 406 14.017 C C 431 430 3.282 7.832 0.428 -0.393 BB_DA405DA406:DT430DT431_CC 4 -0.090 0.161 31.827 -2.033 -0.774 2.872 28.677 B B 406 407 28.512 C C 430 429 3.311 13.574 0.255 -0.094 BB_DA406DA407:DT429DT430_CC 5 -1.225 2.573 25.291 -3.276 -0.794 3.327 35.898 B B 407 408 -0.251 C C 429 428 3.261 -0.154 -0.861 -0.380 BB_DA407DA408:DT428DT429_CC 6 -3.347 5.437 35.746 -0.594 0.914 3.269 39.880 B B 408 409 -1.401 C C 428 427 3.317 -0.954 0.411 -0.413 BB_DA408DG409:DC427DT428_CC 7 -4.085 5.999 39.667 -0.495 -1.078 3.307 36.385 B B 409 410 6.086 C C 427 426 3.551 3.781 -0.385 -1.357 BB_DG409DG410:DC426DC427_CC 8 5.287 -8.510 35.819 -2.729 1.394 3.157 26.489 B B 410 411 3.025 C C 426 425 3.251 1.381 0.142 -0.815 BB_DG410DT411:DA425DC426_CC 9 -3.587 7.854 26.214 -2.140 -1.244 3.275 39.703 B B 411 412 0.399 C C 425 424 3.162 0.270 1.253 1.713 BB_DT411DC412:DG424DA425_CC 10 3.826 -5.642 39.524 2.491 -1.405 3.646 41.304 B B 412 413 3.064 C C 424 423 3.458 2.156 -1.336 1.485 BB_DC412DA413:DT423DG424_CC 11 -4.379 6.221 41.027 1.853 1.381 3.220 28.273 B B 413 414 3.957 C C 423 422 3.267 1.930 0.091 -0.594 BB_DA413DT414:DA422DT423_CC 12 1.568 -3.215 28.165 -1.662 0.175 3.219 38.024 B B 414 415 6.536 C C 422 421 3.194 4.250 0.173 0.376 BB_DT414DG415:DC421DA422_CC 13 1.162 -1.788 37.777 0.046 -0.120 3.129 23.677 B B 415 416 -2.956 C C 421 420 3.161 -1.212 -0.993 0.170 BB_DG415DC416:DG420DC421_CC 14 0.452 -1.103 23.642 0.801 2.566 3.467 49.824 B B 416 417 -4.677 C C 420 419 3.599 -3.933 1.123 0.301 BB_DC416DG417:DC419DG420_CC 15 -4.200 4.995 49.512 0.668 -1.665 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 1999-05-03 1 1 2007-10-16 1 2 2011-07-13 1 3 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y RCSB 1999-04-05 REL REL ZN ZINC ION HOH water 1HCQ PDB ENTRY 1HCQ PDB experimental model ZN 398 4 ZN ZN 398 A ZN 399 4 ZN ZN 399 A WAT 8 5 HOH HOH 8 B WAT 13 5 HOH HOH 13 B WAT 15 5 HOH HOH 15 B WAT 16 5 HOH HOH 16 B WAT 18 5 HOH HOH 18 B WAT 19 5 HOH HOH 19 B WAT 26 5 HOH HOH 26 B WAT 29 5 HOH HOH 29 B WAT 33 5 HOH HOH 33 B WAT 38 5 HOH HOH 38 B WAT 12 5 HOH HOH 12 C WAT 17 5 HOH HOH 17 C WAT 21 5 HOH HOH 21 C WAT 25 5 HOH HOH 25 C WAT 31 5 HOH HOH 31 C WAT 1 5 HOH HOH 1 A WAT 2 5 HOH HOH 2 A WAT 3 5 HOH HOH 3 A WAT 4 5 HOH HOH 4 A WAT 5 5 HOH HOH 5 A WAT 6 5 HOH HOH 6 A WAT 7 5 HOH HOH 7 A WAT 9 5 HOH HOH 9 A WAT 10 5 HOH HOH 10 A WAT 11 5 HOH HOH 11 A WAT 14 5 HOH HOH 14 A WAT 20 5 HOH HOH 20 A WAT 22 5 HOH HOH 22 A WAT 23 5 HOH HOH 23 A WAT 24 5 HOH HOH 24 A WAT 27 5 HOH HOH 27 A WAT 28 5 HOH HOH 28 A WAT 30 5 HOH HOH 30 A WAT 32 5 HOH HOH 32 A WAT 34 5 HOH HOH 34 A WAT 35 5 HOH HOH 35 A WAT 36 5 HOH HOH 36 A WAT 37 5 HOH HOH 37 A C 402 n 1 DC 402 B C 403 n 2 DC 403 B G 404 n 3 DG 404 B A 405 n 4 DA 405 B A 406 n 5 DA 406 B A 407 n 6 DA 407 B A 408 n 7 DA 408 B G 409 n 8 DG 409 B G 410 n 9 DG 410 B T 411 n 10 DT 411 B C 412 n 11 DC 412 B A 413 n 12 DA 413 B T 414 n 13 DT 414 B G 415 n 14 DG 415 B C 416 n 15 DC 416 B G 417 n 16 DG 417 B C 419 n 1 DC 419 C G 420 n 2 DG 420 C C 421 n 3 DC 421 C A 422 n 4 DA 422 C T 423 n 5 DT 423 C G 424 n 6 DG 424 C A 425 n 7 DA 425 C C 426 n 8 DC 426 C C 427 n 9 DC 427 C T 428 n 10 DT 428 C T 429 n 11 DT 429 C T 430 n 12 DT 430 C T 431 n 13 DT 431 C C 432 n 14 DC 432 C G 433 n 15 DG 433 C G 434 n 16 DG 434 C GLY 230 n 1 GLY 230 A ARG 231 n 2 ARG 231 A CYS 232 n 3 CYS 232 A ALA 233 n 4 ALA 233 A VAL 234 n 5 VAL 234 A CYS 235 n 6 CYS 235 A GLY 236 n 7 GLY 236 A ASP 237 n 8 ASP 237 A ASN 238 n 9 ASN 238 A ALA 239 n 10 ALA 239 A SER 240 n 11 SER 240 A CYS 241 n 12 CYS 241 A GLN 242 n 13 GLN 242 A HIS 243 n 14 HIS 243 A TYR 244 n 15 TYR 244 A GLY 245 n 16 GLY 245 A VAL 246 n 17 VAL 246 A ARG 247 n 18 ARG 247 A THR 248 n 19 THR 248 A CYS 249 n 20 CYS 249 A GLU 250 n 21 GLU 250 A GLY 251 n 22 GLY 251 A CYS 252 n 23 CYS 252 A LYS 253 n 24 LYS 253 A GLY 254 n 25 GLY 254 A PHE 255 n 26 PHE 255 A PHE 256 n 27 PHE 256 A LYS 257 n 28 LYS 257 A ARG 258 n 29 ARG 258 A THR 259 n 30 THR 259 A VAL 260 n 31 VAL 260 A GLN 261 n 32 GLN 261 A LYS 262 n 33 LYS 262 A SER 263 n 34 SER 263 A ALA 264 n 35 ALA 264 A LYS 265 n 36 LYS 265 A TYR 266 n 37 TYR 266 A ILE 267 n 38 ILE 267 A CYS 268 n 39 CYS 268 A LEU 269 n 40 LEU 269 A ALA 270 n 41 ALA 270 A ASN 271 n 42 ASN 271 A LYS 272 n 43 LYS 272 A ASP 273 n 44 ASP 273 A CYS 274 n 45 CYS 274 A PRO 275 n 46 PRO 275 A VAL 276 n 47 VAL 276 A ASP 277 n 48 ASP 277 A LYS 278 n 49 LYS 278 A ARG 279 n 50 ARG 279 A ARG 280 n 51 ARG 280 A ARG 281 n 52 ARG 281 A ASN 282 n 53 ASN 282 A ARG 283 n 54 ARG 283 A CYS 284 n 55 CYS 284 A GLN 285 n 56 GLN 285 A PHE 286 n 57 PHE 286 A CYS 287 n 58 CYS 287 A ARG 288 n 59 ARG 288 A PHE 289 n 60 PHE 289 A GLN 290 n 61 GLN 290 A LYS 291 n 62 LYS 291 A CYS 292 n 63 CYS 292 A LEU 293 n 64 LEU 293 A ALA 294 n 65 ALA 294 A VAL 295 n 66 VAL 295 A GLY 296 n 67 GLY 296 A MET 297 n 68 MET 297 A VAL 298 n 69 VAL 298 A LYS 299 n 70 LYS 299 A GLU 300 n 71 GLU 300 A VAL 301 n 72 VAL 301 A VAL 302 n 73 VAL 302 A ARG 303 n 74 ARG 303 A THR 304 n 75 THR 304 A ASP 305 n 76 ASP 305 A SER 306 n 77 SER 306 A LEU 307 n 78 LEU 307 A LYS 308 n 79 LYS 308 A GLY 309 n 80 GLY 309 A ARG 310 n 81 ARG 310 A ARG 311 n 82 ARG 311 A GLY 312 n 83 GLY 312 A ARG 313 n 84 ARG 313 A LEU 314 n 85 LEU 314 A PRO 315 n 86 PRO 315 A SER 316 n 87 SER 316 A LYS 317 n 88 LYS 317 A PRO 318 n 89 PRO 318 A author_defined_assembly 3 trimeric A CYS 232 C SG CYS 3 1_555 A ZN 398 D ZN ZN 1_555 A CYS 235 C SG CYS 6 1_555 109.6 A CYS 232 C SG CYS 3 1_555 A ZN 398 D ZN ZN 1_555 A CYS 249 C SG CYS 20 1_555 99.9 A CYS 235 C SG CYS 6 1_555 A ZN 398 D ZN ZN 1_555 A CYS 249 C SG CYS 20 1_555 106.3 A CYS 232 C SG CYS 3 1_555 A ZN 398 D ZN ZN 1_555 A CYS 252 C SG CYS 23 1_555 105.7 A CYS 235 C SG CYS 6 1_555 A ZN 398 D ZN ZN 1_555 A CYS 252 C SG CYS 23 1_555 127.1 A CYS 249 C SG CYS 20 1_555 A ZN 398 D ZN ZN 1_555 A CYS 252 C SG CYS 23 1_555 104.7 A CYS 268 C SG CYS 39 1_555 A ZN 399 E ZN ZN 1_555 A CYS 274 C SG CYS 45 1_555 103.8 A CYS 268 C SG CYS 39 1_555 A ZN 399 E ZN ZN 1_555 A CYS 284 C SG CYS 55 1_555 128.4 A CYS 274 C SG CYS 45 1_555 A ZN 399 E ZN ZN 1_555 A CYS 284 C SG CYS 55 1_555 110.3 A CYS 268 C SG CYS 39 1_555 A ZN 399 E ZN ZN 1_555 A CYS 287 C SG CYS 58 1_555 112.3 A CYS 274 C SG CYS 45 1_555 A ZN 399 E ZN ZN 1_555 A CYS 287 C SG CYS 58 1_555 95.3 A CYS 284 C SG CYS 55 1_555 A ZN 399 E ZN ZN 1_555 A CYS 287 C SG CYS 58 1_555 101.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O CYS 241 C O CYS 12 A N THR 248 C N THR 19 1 B O5' DG 417 A O5' DG 16 0 Y 1 B C5' DG 417 A C5' DG 16 0 Y 1 B C4' DG 417 A C4' DG 16 0 Y 1 B O4' DG 417 A O4' DG 16 0 Y 1 B C3' DG 417 A C3' DG 16 0 Y 1 B C2' DG 417 A C2' DG 16 0 Y 1 B C1' DG 417 A C1' DG 16 0 Y 1 C O5' DC 419 B O5' DC 1 0 Y 1 C C5' DC 419 B C5' DC 1 0 Y 1 C C4' DC 419 B C4' DC 1 0 Y 1 C O4' DC 419 B O4' DC 1 0 Y 1 C C3' DC 419 B C3' DC 1 0 Y 1 C C2' DC 419 B C2' DC 1 0 Y 1 C C1' DC 419 B C1' DC 1 0 Y 1 A CG LYS 265 C CG LYS 36 1 Y 1 A CD LYS 265 C CD LYS 36 1 Y 1 A CE LYS 265 C CE LYS 36 1 Y 1 A NZ LYS 265 C NZ LYS 36 1 Y 1 A CG LYS 317 C CG LYS 88 1 Y 1 A CD LYS 317 C CD LYS 88 1 Y 1 A CE LYS 317 C CE LYS 88 1 Y 1 A NZ LYS 317 C NZ LYS 88 1 Y 1 A A O O GLY HOH 251 9 2.17 1 B DA 408 0.071 SIDE CHAIN 1 A TYR 244 0.063 SIDE CHAIN 1 A VAL 234 -107.49 -62.52 1 A ASP 237 -57.83 -176.92 1 A ARG 247 -56.84 103.27 1 A LYS 253 -46.35 -70.48 1 A ALA 270 -83.30 -122.22 1 A ASP 273 -152.59 25.65 1 A ASP 305 48.86 -132.36 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 32.8 0.0 0.0 0.0 0.0 0.0 0.0 BULK SOLVENT MODEL USED 0.295 0.012 0.219 2.7 18.0 568 5200 10.9 95.0 RANDOM 401381.9 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1HCQ FLAT MODEL 27.0 0.29 0.45 0.35 5.0 0.51 0.51 2.7 18.0 38 1380 2 650 690 0.016 2.4 21.6 1.78 3.06 1.5 4.83 2.0 4.36 2.0 6.34 2.5 0.42 0.04 0.35 2.87 97 787 6 11.0 97.0 80.3 2.7 18.0 1CIT 5200 3.0 0.073 1 14.5 2.3 95.0 2.7 2.8 3.1 0.368 96.9 data reduction DENZO data scaling SCALEPACK model building X-PLOR phasing MLPHARE refinement CNS 0.5 phasing X-PLOR DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 5 N N 5 N N A GLU 250 C GLU 21 HELX_P A LYS 262 C LYS 33 1 1 13 A GLN 285 C GLN 56 HELX_P A ALA 294 C ALA 65 1 2 10 A LYS 299 C LYS 70 HELX_P A VAL 301 C VAL 72 5 3 3 A ASP 273 C ASP 44 HELX_P A LEU 307 C LEU 78 5 4 35 metalc 2.713 A CYS 232 C SG CYS 3 1_555 A ZN 398 D ZN ZN 1_555 metalc 2.645 A CYS 235 C SG CYS 6 1_555 A ZN 398 D ZN ZN 1_555 metalc 2.629 A CYS 249 C SG CYS 20 1_555 A ZN 398 D ZN ZN 1_555 metalc 2.518 A CYS 252 C SG CYS 23 1_555 A ZN 398 D ZN ZN 1_555 metalc 2.571 A CYS 268 C SG CYS 39 1_555 A ZN 399 E ZN ZN 1_555 metalc 2.562 A CYS 274 C SG CYS 45 1_555 A ZN 399 E ZN ZN 1_555 metalc 2.609 A CYS 284 C SG CYS 55 1_555 A ZN 399 E ZN ZN 1_555 metalc 2.564 A CYS 287 C SG CYS 58 1_555 A ZN 399 E ZN ZN 1_555 hydrog WATSON-CRICK B DC 402 A N3 DC 1 1_555 C DG 434 B N1 DG 16 1_555 hydrog WATSON-CRICK B DC 402 A N4 DC 1 1_555 C DG 434 B O6 DG 16 1_555 hydrog WATSON-CRICK B DC 402 A O2 DC 1 1_555 C DG 434 B N2 DG 16 1_555 hydrog WATSON-CRICK B DC 403 A N3 DC 2 1_555 C DG 433 B N1 DG 15 1_555 hydrog WATSON-CRICK B DC 403 A N4 DC 2 1_555 C DG 433 B O6 DG 15 1_555 hydrog WATSON-CRICK B DC 403 A O2 DC 2 1_555 C DG 433 B N2 DG 15 1_555 hydrog WATSON-CRICK B DG 404 A N1 DG 3 1_555 C DC 432 B N3 DC 14 1_555 hydrog WATSON-CRICK B DG 404 A N2 DG 3 1_555 C DC 432 B O2 DC 14 1_555 hydrog WATSON-CRICK B DG 404 A O6 DG 3 1_555 C DC 432 B N4 DC 14 1_555 hydrog WATSON-CRICK B DA 405 A N1 DA 4 1_555 C DT 431 B N3 DT 13 1_555 hydrog WATSON-CRICK B DA 405 A N6 DA 4 1_555 C DT 431 B O4 DT 13 1_555 hydrog WATSON-CRICK B DA 406 A N1 DA 5 1_555 C DT 430 B N3 DT 12 1_555 hydrog WATSON-CRICK B DA 406 A N6 DA 5 1_555 C DT 430 B O4 DT 12 1_555 hydrog WATSON-CRICK B DA 407 A N1 DA 6 1_555 C DT 429 B N3 DT 11 1_555 hydrog WATSON-CRICK B DA 407 A N6 DA 6 1_555 C DT 429 B O4 DT 11 1_555 hydrog WATSON-CRICK B DA 408 A N1 DA 7 1_555 C DT 428 B N3 DT 10 1_555 hydrog WATSON-CRICK B DA 408 A N6 DA 7 1_555 C DT 428 B O4 DT 10 1_555 hydrog WATSON-CRICK B DG 409 A N1 DG 8 1_555 C DC 427 B N3 DC 9 1_555 hydrog WATSON-CRICK B DG 409 A N2 DG 8 1_555 C DC 427 B O2 DC 9 1_555 hydrog WATSON-CRICK B DG 409 A O6 DG 8 1_555 C DC 427 B N4 DC 9 1_555 hydrog WATSON-CRICK B DG 410 A N1 DG 9 1_555 C DC 426 B N3 DC 8 1_555 hydrog WATSON-CRICK B DG 410 A N2 DG 9 1_555 C DC 426 B O2 DC 8 1_555 hydrog WATSON-CRICK B DG 410 A O6 DG 9 1_555 C DC 426 B N4 DC 8 1_555 hydrog DT-DA PAIR B DT 411 A N3 DT 10 1_555 C DA 425 B N1 DA 7 1_555 hydrog DC-DG PAIR B DC 412 A O2 DC 11 1_555 C DG 424 B N2 DG 6 1_555 hydrog DA-DT PAIR B DA 413 A N1 DA 12 1_555 C DT 423 B N3 DT 5 1_555 hydrog WATSON-CRICK B DT 414 A N3 DT 13 1_555 C DA 422 B N1 DA 4 1_555 hydrog WATSON-CRICK B DT 414 A O4 DT 13 1_555 C DA 422 B N6 DA 4 1_555 hydrog WATSON-CRICK B DG 415 A N1 DG 14 1_555 C DC 421 B N3 DC 3 1_555 hydrog WATSON-CRICK B DG 415 A N2 DG 14 1_555 C DC 421 B O2 DC 3 1_555 hydrog WATSON-CRICK B DG 415 A O6 DG 14 1_555 C DC 421 B N4 DC 3 1_555 hydrog DC-DG PAIR B DC 416 A N4 DC 15 1_555 C DG 420 B O6 DG 2 1_555 hydrog WATSON-CRICK B DG 417 A N1 DG 16 1_555 C DC 419 B N3 DC 1 1_555 hydrog WATSON-CRICK B DG 417 A N2 DG 16 1_555 C DC 419 B O2 DC 1 1_555 hydrog WATSON-CRICK B DG 417 A O6 DG 16 1_555 C DC 419 B N4 DC 1 1_555 TRANSCRIPTION/DNA ORPHAN NUCLEAR RECEPTOR, EARLY IMMEDIATE RESPONSE GENE PRODUCT, TRANSCRIPTION FACTOR, MONOMERIC PROTEIN-DNA COMPLEX, MINOR GROOVE INTERACTIONS, PROTEIN/DNA, TRANSCRIPTION-DNA COMPLEX NR4A1_RAT UNP 3 P22829 1CIT PDB 1 1CIT 1CIT PDB 2 1CIT 268 356 1CIT 230 318 P22829 A 1 1 89 402 417 1CIT 402 417 1CIT B 2 1 16 419 434 1CIT 419 434 1CIT C 3 1 16 2 anti-parallel A CYS 241 C CYS 12 A HIS 243 C HIS 14 A VAL 246 C VAL 17 A THR 248 C THR 19 ZINC COORDINATED BY 4 CYSTEINES Author 5 ZINC COORDINATED BY 4 CYSTEINES Author 5 BINDING SITE FOR RESIDUE ZN A 398 A ZN 398 Software 4 BINDING SITE FOR RESIDUE ZN A 399 A ZN 399 Software 4 A ZN 398 D ZN 5 1_555 A CYS 232 C CYS 3 5 1_555 A CYS 235 C CYS 6 5 1_555 A CYS 249 C CYS 20 5 1_555 A CYS 252 C CYS 23 5 1_555 A ZN 399 E ZN 5 1_555 A CYS 268 C CYS 39 5 1_555 A CYS 274 C CYS 45 5 1_555 A CYS 284 C CYS 55 5 1_555 A CYS 287 C CYS 58 5 1_555 A CYS 232 C CYS 3 4 1_555 A CYS 235 C CYS 6 4 1_555 A CYS 249 C CYS 20 4 1_555 A CYS 252 C CYS 23 4 1_555 A CYS 268 C CYS 39 4 1_555 A CYS 274 C CYS 45 4 1_555 A CYS 284 C CYS 55 4 1_555 A CYS 287 C CYS 58 4 1_555 4 P 1 21 1