0.012743
0.000000
0.000000
0.000000
0.006097
0.000000
0.000000
0.000000
0.009662
0.00000
0.00000
0.00000
Hakansson, K.
Wigley, D.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
78.476
164.013
103.502
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C20 H27 N10 O18 P3
788.406
DIGUANOSINE-5'-TRIPHOSPHATE
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
95
1505
1510
10.1073/pnas.95.4.1505
9465045
Structure of a complex between a cap analogue and mRNA guanylyl transferase demonstrates the structural chemistry of RNA capping.
1998
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
53
482
Crystallization of the RNA Guanylyltransferase of Chlorella Virus Pbcv-1
1997
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
89
545
X-Ray Crystallography Reveals a Large Conformational Change During Guanyl Transfer by Mrna Capping Enzymes
1997
10.2210/pdb1cko/pdb
pdb_00001cko
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1997-06
MAR scanner 300 mm plate
M
x-ray
1
1.448
1.0
PX7.2
SRS
1.448
SYNCHROTRON
SRS BEAMLINE PX7.2
37884.992
MRNA CAPPING ENZYME
2.7.7.50
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
788.406
DIGUANOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
RNA GUANYLYLTRANSFERASE
no
no
MVPPTINTGKNITTERAVLTLNGLQIKLHKVVGESRDDIVAKMKDLAMDDHKFPRLPGPNPVSIERKDFEKLKQNKYVVS
EKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPRVLFQGSIFDGELCVDIVEKKFAFVLFDAVVVSGVTVSQMD
LASRFFAMKRSLKEFKNVPEDPAILRYKEWIPLEHPTIIKDHLKKANAIYHTDGLIIMSVDEPVIYGRNFNLFKLKPGTH
HTIDFIIMSEDGTIGIFDPNLRKNVPVGKLDGYYNKGSIVECGFADGTWKYIQGRSDKNQANDRLTYEKTLLNIEENITI
DELLDLFKWE
MVPPTINTGKNITTERAVLTLNGLQIKLHKVVGESRDDIVAKMKDLAMDDHKFPRLPGPNPVSIERKDFEKLKQNKYVVS
EKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPRVLFQGSIFDGELCVDIVEKKFAFVLFDAVVVSGVTVSQMD
LASRFFAMKRSLKEFKNVPEDPAILRYKEWIPLEHPTIIKDHLKKANAIYHTDGLIIMSVDEPVIYGRNFNLFKLKPGTH
HTIDFIIMSEDGTIGIFDPNLRKNVPVGKLDGYYNKGSIVECGFADGTWKYIQGRSDKNQANDRLTYEKTLLNIEENITI
DELLDLFKWE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Chlorovirus
Escherichia
sample
10506
Paramecium bursaria Chlorella virus 1
562
Escherichia coli
1
4.4
72.0
VAPOR DIFFUSION, HANGING DROP
6.5
HANGING DROP VAPOR DIFFUSION. 15 MG/ML PROTEIN IN 50 MM TRIS-HCL, 1.3 MM CAP ANALOG (GPPPG) 0.4 M NACL, 2 MM EDTA, 4 MM DTT, PH 7.5 WERE MIXED WITH AN EQUAL VOLUME OF AND EQUILIBRATED AGAINST 50 MM POTASSIUM PHOSPHATE, 5-10% PEG 8000, 2MM ZNCL2 PH 6.5., vapor diffusion - hanging drop
6.5-7.5
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1998-01-28
1
1
2008-03-24
1
2
2011-07-13
1
3
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-09-06
REL
REL
ZN
ZINC ION
GP3
DIGUANOSINE-5'-TRIPHOSPHATE
1CKM
OPEN FORM OF PDB ENTRY 1CKM
PDB
experimental model
ZN
888
2
ZN
ZN
888
A
GP3
999
3
GP3
GP3
999
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
ASN
11
n
11
ASN
11
A
ILE
12
n
12
ILE
12
A
THR
13
n
13
THR
13
A
THR
14
n
14
THR
14
A
GLU
15
n
15
GLU
15
A
ARG
16
n
16
ARG
16
A
ALA
17
n
17
ALA
17
A
VAL
18
n
18
VAL
18
A
LEU
19
n
19
LEU
19
A
THR
20
n
20
THR
20
A
LEU
21
n
21
LEU
21
A
ASN
22
n
22
ASN
22
A
GLY
23
n
23
GLY
23
A
LEU
24
n
24
LEU
24
A
GLN
25
n
25
GLN
25
A
ILE
26
n
26
ILE
26
A
LYS
27
n
27
LYS
27
A
LEU
28
n
28
LEU
28
A
HIS
29
n
29
HIS
29
A
LYS
30
n
30
LYS
30
A
VAL
31
n
31
VAL
31
A
VAL
32
n
32
VAL
32
A
GLY
33
n
33
GLY
33
A
GLU
34
n
34
GLU
34
A
SER
35
n
35
SER
35
A
ARG
36
n
36
ARG
36
A
ASP
37
n
37
ASP
37
A
ASP
38
n
38
ASP
38
A
ILE
39
n
39
ILE
39
A
VAL
40
n
40
VAL
40
A
ALA
41
n
41
ALA
41
A
LYS
42
n
42
LYS
42
A
MET
43
n
43
MET
43
A
LYS
44
n
44
LYS
44
A
ASP
45
n
45
ASP
45
A
LEU
46
n
46
LEU
46
A
ALA
47
n
47
ALA
47
A
MET
48
n
48
MET
48
A
ASP
49
n
49
ASP
49
A
ASP
50
n
50
ASP
50
A
HIS
51
n
51
HIS
51
A
LYS
52
n
52
LYS
52
A
PHE
53
n
53
PHE
53
A
PRO
54
n
54
PRO
54
A
ARG
55
n
55
ARG
55
A
LEU
56
n
56
LEU
56
A
PRO
57
n
57
PRO
57
A
GLY
58
n
58
GLY
58
A
PRO
59
n
59
PRO
59
A
ASN
60
n
60
ASN
60
A
PRO
61
n
61
PRO
61
A
VAL
62
n
62
VAL
62
A
SER
63
n
63
SER
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ARG
66
n
66
ARG
66
A
LYS
67
n
67
LYS
67
A
ASP
68
n
68
ASP
68
A
PHE
69
n
69
PHE
69
A
GLU
70
n
70
GLU
70
A
LYS
71
n
71
LYS
71
A
LEU
72
n
72
LEU
72
A
LYS
73
n
73
LYS
73
A
GLN
74
n
74
GLN
74
A
ASN
75
n
75
ASN
75
A
LYS
76
n
76
LYS
76
A
TYR
77
n
77
TYR
77
A
VAL
78
n
78
VAL
78
A
VAL
79
n
79
VAL
79
A
SER
80
n
80
SER
80
A
GLU
81
n
81
GLU
81
A
LYS
82
n
82
LYS
82
A
THR
83
n
83
THR
83
A
ASP
84
n
84
ASP
84
A
GLY
85
n
85
GLY
85
A
ILE
86
n
86
ILE
86
A
ARG
87
n
87
ARG
87
A
PHE
88
n
88
PHE
88
A
MET
89
n
89
MET
89
A
MET
90
n
90
MET
90
A
PHE
91
n
91
PHE
91
A
PHE
92
n
92
PHE
92
A
THR
93
n
93
THR
93
A
ARG
94
n
94
ARG
94
A
VAL
95
n
95
VAL
95
A
PHE
96
n
96
PHE
96
A
GLY
97
n
97
GLY
97
A
PHE
98
n
98
PHE
98
A
LYS
99
n
99
LYS
99
A
VAL
100
n
100
VAL
100
A
CYS
101
n
101
CYS
101
A
THR
102
n
102
THR
102
A
ILE
103
n
103
ILE
103
A
ILE
104
n
104
ILE
104
A
ASP
105
n
105
ASP
105
A
ARG
106
n
106
ARG
106
A
ALA
107
n
107
ALA
107
A
MET
108
n
108
MET
108
A
THR
109
n
109
THR
109
A
VAL
110
n
110
VAL
110
A
TYR
111
n
111
TYR
111
A
LEU
112
n
112
LEU
112
A
LEU
113
n
113
LEU
113
A
PRO
114
n
114
PRO
114
A
PHE
115
n
115
PHE
115
A
LYS
116
n
116
LYS
116
A
ASN
117
n
117
ASN
117
A
ILE
118
n
118
ILE
118
A
PRO
119
n
119
PRO
119
A
ARG
120
n
120
ARG
120
A
VAL
121
n
121
VAL
121
A
LEU
122
n
122
LEU
122
A
PHE
123
n
123
PHE
123
A
GLN
124
n
124
GLN
124
A
GLY
125
n
125
GLY
125
A
SER
126
n
126
SER
126
A
ILE
127
n
127
ILE
127
A
PHE
128
n
128
PHE
128
A
ASP
129
n
129
ASP
129
A
GLY
130
n
130
GLY
130
A
GLU
131
n
131
GLU
131
A
LEU
132
n
132
LEU
132
A
CYS
133
n
133
CYS
133
A
VAL
134
n
134
VAL
134
A
ASP
135
n
135
ASP
135
A
ILE
136
n
136
ILE
136
A
VAL
137
n
137
VAL
137
A
GLU
138
n
138
GLU
138
A
LYS
139
n
139
LYS
139
A
LYS
140
n
140
LYS
140
A
PHE
141
n
141
PHE
141
A
ALA
142
n
142
ALA
142
A
PHE
143
n
143
PHE
143
A
VAL
144
n
144
VAL
144
A
LEU
145
n
145
LEU
145
A
PHE
146
n
146
PHE
146
A
ASP
147
n
147
ASP
147
A
ALA
148
n
148
ALA
148
A
VAL
149
n
149
VAL
149
A
VAL
150
n
150
VAL
150
A
VAL
151
n
151
VAL
151
A
SER
152
n
152
SER
152
A
GLY
153
n
153
GLY
153
A
VAL
154
n
154
VAL
154
A
THR
155
n
155
THR
155
A
VAL
156
n
156
VAL
156
A
SER
157
n
157
SER
157
A
GLN
158
n
158
GLN
158
A
MET
159
n
159
MET
159
A
ASP
160
n
160
ASP
160
A
LEU
161
n
161
LEU
161
A
ALA
162
n
162
ALA
162
A
SER
163
n
163
SER
163
A
ARG
164
n
164
ARG
164
A
PHE
165
n
165
PHE
165
A
PHE
166
n
166
PHE
166
A
ALA
167
n
167
ALA
167
A
MET
168
n
168
MET
168
A
LYS
169
n
169
LYS
169
A
ARG
170
n
170
ARG
170
A
SER
171
n
171
SER
171
A
LEU
172
n
172
LEU
172
A
LYS
173
n
173
LYS
173
A
GLU
174
n
174
GLU
174
A
PHE
175
n
175
PHE
175
A
LYS
176
n
176
LYS
176
A
ASN
177
n
177
ASN
177
A
VAL
178
n
178
VAL
178
A
PRO
179
n
179
PRO
179
A
GLU
180
n
180
GLU
180
A
ASP
181
n
181
ASP
181
A
PRO
182
n
182
PRO
182
A
ALA
183
n
183
ALA
183
A
ILE
184
n
184
ILE
184
A
LEU
185
n
185
LEU
185
A
ARG
186
n
186
ARG
186
A
TYR
187
n
187
TYR
187
A
LYS
188
n
188
LYS
188
A
GLU
189
n
189
GLU
189
A
TRP
190
n
190
TRP
190
A
ILE
191
n
191
ILE
191
A
PRO
192
n
192
PRO
192
A
LEU
193
n
193
LEU
193
A
GLU
194
n
194
GLU
194
A
HIS
195
n
195
HIS
195
A
PRO
196
n
196
PRO
196
A
THR
197
n
197
THR
197
A
ILE
198
n
198
ILE
198
A
ILE
199
n
199
ILE
199
A
LYS
200
n
200
LYS
200
A
ASP
201
n
201
ASP
201
A
HIS
202
n
202
HIS
202
A
LEU
203
n
203
LEU
203
A
LYS
204
n
204
LYS
204
A
LYS
205
n
205
LYS
205
A
ALA
206
n
206
ALA
206
A
ASN
207
n
207
ASN
207
A
ALA
208
n
208
ALA
208
A
ILE
209
n
209
ILE
209
A
TYR
210
n
210
TYR
210
A
HIS
211
n
211
HIS
211
A
THR
212
n
212
THR
212
A
ASP
213
n
213
ASP
213
A
GLY
214
n
214
GLY
214
A
LEU
215
n
215
LEU
215
A
ILE
216
n
216
ILE
216
A
ILE
217
n
217
ILE
217
A
MET
218
n
218
MET
218
A
SER
219
n
219
SER
219
A
VAL
220
n
220
VAL
220
A
ASP
221
n
221
ASP
221
A
GLU
222
n
222
GLU
222
A
PRO
223
n
223
PRO
223
A
VAL
224
n
224
VAL
224
A
ILE
225
n
225
ILE
225
A
TYR
226
n
226
TYR
226
A
GLY
227
n
227
GLY
227
A
ARG
228
n
228
ARG
228
A
ASN
229
n
229
ASN
229
A
PHE
230
n
230
PHE
230
A
ASN
231
n
231
ASN
231
A
LEU
232
n
232
LEU
232
A
PHE
233
n
233
PHE
233
A
LYS
234
n
234
LYS
234
A
LEU
235
n
235
LEU
235
A
LYS
236
n
236
LYS
236
A
PRO
237
n
237
PRO
237
A
GLY
238
n
238
GLY
238
A
THR
239
n
239
THR
239
A
HIS
240
n
240
HIS
240
A
HIS
241
n
241
HIS
241
A
THR
242
n
242
THR
242
A
ILE
243
n
243
ILE
243
A
ASP
244
n
244
ASP
244
A
PHE
245
n
245
PHE
245
A
ILE
246
n
246
ILE
246
A
ILE
247
n
247
ILE
247
A
MET
248
n
248
MET
248
A
SER
249
n
249
SER
249
A
GLU
250
n
250
GLU
250
A
ASP
251
n
251
ASP
251
A
GLY
252
n
252
GLY
252
A
THR
253
n
253
THR
253
A
ILE
254
n
254
ILE
254
A
GLY
255
n
255
GLY
255
A
ILE
256
n
256
ILE
256
A
PHE
257
n
257
PHE
257
A
ASP
258
n
258
ASP
258
A
PRO
259
n
259
PRO
259
A
ASN
260
n
260
ASN
260
A
LEU
261
n
261
LEU
261
A
ARG
262
n
262
ARG
262
A
LYS
263
n
263
LYS
263
A
ASN
264
n
264
ASN
264
A
VAL
265
n
265
VAL
265
A
PRO
266
n
266
PRO
266
A
VAL
267
n
267
VAL
267
A
GLY
268
n
268
GLY
268
A
LYS
269
n
269
LYS
269
A
LEU
270
n
270
LEU
270
A
ASP
271
n
271
ASP
271
A
GLY
272
n
272
GLY
272
A
TYR
273
n
273
TYR
273
A
TYR
274
n
274
TYR
274
A
ASN
275
n
275
ASN
275
A
LYS
276
n
276
LYS
276
A
GLY
277
n
277
GLY
277
A
SER
278
n
278
SER
278
A
ILE
279
n
279
ILE
279
A
VAL
280
n
280
VAL
280
A
GLU
281
n
281
GLU
281
A
CYS
282
n
282
CYS
282
A
GLY
283
n
283
GLY
283
A
PHE
284
n
284
PHE
284
A
ALA
285
n
285
ALA
285
A
ASP
286
n
286
ASP
286
A
GLY
287
n
287
GLY
287
A
THR
288
n
288
THR
288
A
TRP
289
n
289
TRP
289
A
LYS
290
n
290
LYS
290
A
TYR
291
n
291
TYR
291
A
ILE
292
n
292
ILE
292
A
GLN
293
n
293
GLN
293
A
GLY
294
n
294
GLY
294
A
ARG
295
n
295
ARG
295
A
SER
296
n
296
SER
296
A
ASP
297
n
297
ASP
297
A
LYS
298
n
298
LYS
298
A
ASN
299
n
299
ASN
299
A
GLN
300
n
300
GLN
300
A
ALA
301
n
301
ALA
301
A
ASN
302
n
302
ASN
302
A
ASP
303
n
303
ASP
303
A
ARG
304
n
304
ARG
304
A
LEU
305
n
305
LEU
305
A
THR
306
n
306
THR
306
A
TYR
307
n
307
TYR
307
A
GLU
308
n
308
GLU
308
A
LYS
309
n
309
LYS
309
A
THR
310
n
310
THR
310
A
LEU
311
n
311
LEU
311
A
LEU
312
n
312
LEU
312
A
ASN
313
n
313
ASN
313
A
ILE
314
n
314
ILE
314
A
GLU
315
n
315
GLU
315
A
GLU
316
n
316
GLU
316
A
ASN
317
n
317
ASN
317
A
ILE
318
n
318
ILE
318
A
THR
319
n
319
THR
319
A
ILE
320
n
320
ILE
320
A
ASP
321
n
321
ASP
321
A
GLU
322
n
322
GLU
322
A
LEU
323
n
323
LEU
323
A
LEU
324
n
324
LEU
324
A
ASP
325
n
325
ASP
325
A
LEU
326
n
326
LEU
326
A
PHE
327
n
327
PHE
327
A
n
328
328
A
n
329
329
A
n
330
330
A
author_and_software_defined_assembly
PQS
1
monomeric
software_defined_assembly
PISA
2
dimeric
3040
-63
31970
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_565
x,-y+1,-z
crystal symmetry operation
0.0000000000
164.0130000000
0.0000000000
A
O
GLU
15
A
O
GLU
15
A
N
LYS
30
A
N
LYS
30
A
O
HIS
29
A
O
HIS
29
A
N
LEU
112
A
N
LEU
112
A
O
TYR
111
A
O
TYR
111
A
N
ILE
103
A
N
ILE
103
A
O
PHE
98
A
O
PHE
98
A
N
VAL
95
A
N
VAL
95
A
O
ILE
86
A
O
ILE
86
A
N
LEU
132
A
N
LEU
132
A
O
GLU
131
A
O
GLU
131
A
N
VAL
144
A
N
VAL
144
A
O
PHE
143
A
O
PHE
143
A
N
ILE
184
A
N
ILE
184
A
O
VAL
78
A
O
VAL
78
A
N
MET
218
A
N
MET
218
A
O
LEU
215
A
O
LEU
215
A
N
LEU
235
A
N
LEU
235
A
O
ILE
243
A
O
ILE
243
A
N
CYS
282
A
N
CYS
282
A
O
GLU
281
A
O
GLU
281
A
N
GLN
293
A
N
GLN
293
A
O
ILE
127
A
O
ILE
127
A
N
VAL
150
A
N
VAL
150
A
O
ILE
254
A
O
ILE
254
A
N
GLY
268
A
N
GLY
268
1
A
MET
1
A
MET
1
1
Y
1
A
VAL
2
A
VAL
2
1
Y
1
A
PRO
3
A
PRO
3
1
Y
1
A
PRO
4
A
PRO
4
1
Y
1
A
THR
5
A
THR
5
1
Y
1
A
ILE
6
A
ILE
6
1
Y
1
A
ASN
7
A
ASN
7
1
Y
1
A
THR
8
A
THR
8
1
Y
1
A
GLY
9
A
GLY
9
1
Y
1
A
LYS
10
A
LYS
10
1
Y
1
A
LYS
328
A
LYS
328
1
Y
1
A
TRP
329
A
TRP
329
1
Y
1
A
GLU
330
A
GLU
330
1
Y
1
A
TYR
77
0.074
SIDE CHAIN
1
A
ARG
87
0.092
SIDE CHAIN
1
A
PHE
91
0.076
SIDE CHAIN
1
A
TYR
111
0.074
SIDE CHAIN
1
A
TYR
187
0.076
SIDE CHAIN
1
A
TYR
226
0.079
SIDE CHAIN
1
A
TYR
273
0.138
SIDE CHAIN
1
A
PHE
284
0.088
SIDE CHAIN
1
A
ARG
304
0.122
SIDE CHAIN
1
A
TYR
307
0.064
SIDE CHAIN
1
-13.56
2.20
113.40
99.84
A
A
A
CA
CB
CG
ARG
ARG
ARG
66
66
66
N
1
4.16
0.50
120.30
124.46
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
120
120
120
N
1
-4.07
0.50
120.30
116.23
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
120
120
120
N
1
-12.09
2.00
110.40
98.31
A
A
A
CB
CA
C
PHE
PHE
PHE
146
146
146
N
1
4.70
0.50
120.30
125.00
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
164
164
164
N
1
-3.41
0.50
120.30
116.89
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
170
170
170
N
1
13.56
2.20
113.40
126.96
A
A
A
CA
CB
CG
LYS
LYS
LYS
173
173
173
N
1
6.25
0.80
106.30
112.55
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
190
190
190
N
1
-5.84
0.80
107.30
101.46
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
190
190
190
N
1
-13.66
2.20
117.20
103.54
A
A
A
CA
C
N
LEU
LEU
LYS
235
235
236
Y
1
-11.20
1.80
114.00
102.80
A
A
A
CA
CB
SG
CYS
CYS
CYS
282
282
282
N
1
6.61
0.80
106.30
112.91
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
289
289
289
N
1
-5.15
0.80
107.30
102.15
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
289
289
289
N
1
A
A
NE2
CD2
HIS
HIS
29
29
-0.067
0.011
1.373
1.306
N
1
A
A
NE2
CD2
HIS
HIS
51
51
-0.071
0.011
1.373
1.302
N
1
A
A
NE2
CD2
HIS
HIS
195
195
-0.073
0.011
1.373
1.300
N
1
A
A
NE2
CD2
HIS
HIS
240
240
-0.070
0.011
1.373
1.303
N
1
A
A
NE2
CD2
HIS
HIS
241
241
-0.077
0.011
1.373
1.296
N
1
A
A
CG
CD2
TRP
TRP
289
289
-0.104
0.017
1.432
1.328
N
1
A
PRO
57
-62.98
70.54
1
A
LYS
67
-36.83
-31.36
1
A
ASN
117
-81.07
37.70
1
A
MET
159
-56.16
-157.31
1
A
GLU
194
-71.55
27.61
1
A
ASP
213
-143.97
40.39
1
A
PHE
230
-57.97
-8.84
1
A
VAL
267
-141.39
-1.29
1
A
ASP
325
-162.70
-33.76
PARAM19.PRO
TOPH19.PEP
PARAM19.SOL
USER DEFINED
USER DEFINED
72.
0.3140000
0.2330000
0.2330000
3.1
10.0
11642
8.0
96.7
1
0.0
MOLECULAR REPLACEMENT. THE ROTATION FUNCTION WAS SOLVED FOR EACH OF THE TWO DOMAINS SEPARATELY. TRANSLATION WAS PERFORMED WITH THE TWO DOMAINS INDEPENDENTLY BUT SIMULTANEOUSLY.
OPEN FORM OF PDB ENTRY 1CKM
3.1
10.0
0
2613
52
0
2561
0.015
3.169
24.98
2.575
107.
3.1
20.0
1CKO
12014
0.0
0.0350000
1
2.9
96.8
phasing
AMoRE
refinement
X-PLOR
data reduction
DENZO
data scaling
SCALEPACK
STRUCTURE OF MRNA CAPPING ENZYME IN COMPLEX WITH THE CAP ANALOG GPPPG
1
N
N
2
N
N
3
N
N
A
GLU
34
A
GLU
34
HELX_P
A
ALA
47
A
ALA
47
1
1
14
A
ARG
66
A
ARG
66
HELX_P
A
GLN
74
A
GLN
74
5
2
9
A
LEU
122
A
LEU
122
HELX_P
A
GLN
124
A
GLN
124
5
3
3
A
LEU
161
A
LEU
161
HELX_P
A
SER
171
A
SER
171
1
4
11
A
PRO
196
A
PRO
196
HELX_P
A
ALA
208
A
ALA
208
1
5
13
A
ARG
304
A
ARG
304
HELX_P
A
GLU
316
A
GLU
316
1
6
13
A
ILE
320
A
ILE
320
HELX_P
A
LEU
323
A
LEU
323
1
7
4
CAPPING ENZYME
MRNA, CAPPING ENZYME, NUCLEOTIDYLTRANSFERASE
MCE_CHVP1
UNP
1
1
Q84424
MVPPTINTGKNITTERAVLTLNGLQIKLHKVVGESRDDIVAKMKDLAMDDHKFPRLPGPNPVSIERKDFEKLKQNKYVVS
EKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPRVLFQGSIFDGELCVDIVEKKFAFVLFDAVVVSGVTVSQMD
LASRFFAMKRSLKEFKNVPEDPAILRYKEWIPLEHPTIIKDHLKKANAIYHTDGLIIMSVDEPVIYGRNFNLFKLKPGTH
HTIDFIIMSEDGTIGIFDPNLRKNVPVGKLDGYYNKGSIVECGFADGTWKYIQGRSDKNQANDRLTYEKTLLNIEENITI
DELLDLFKWE
1
330
1CKO
1
330
Q84424
A
1
1
330
8
3
3
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
14
A
THR
14
A
LEU
21
A
LEU
21
A
LEU
24
A
LEU
24
A
VAL
31
A
VAL
31
A
VAL
110
A
VAL
110
A
LEU
112
A
LEU
112
A
PHE
98
A
PHE
98
A
ILE
104
A
ILE
104
A
ILE
86
A
ILE
86
A
VAL
95
A
VAL
95
A
SER
126
A
SER
126
A
ASP
135
A
ASP
135
A
LYS
140
A
LYS
140
A
LEU
145
A
LEU
145
A
ILE
184
A
ILE
184
A
TYR
187
A
TYR
187
A
TYR
77
A
TYR
77
A
GLU
81
A
GLU
81
A
LEU
215
A
LEU
215
A
SER
219
A
SER
219
A
LEU
232
A
LEU
232
A
LEU
235
A
LEU
235
A
THR
242
A
THR
242
A
ILE
246
A
ILE
246
A
ILE
279
A
ILE
279
A
ALA
285
A
ALA
285
A
THR
288
A
THR
288
A
GLY
294
A
GLY
294
A
ILE
127
A
ILE
127
A
ASP
129
A
ASP
129
A
ASP
147
A
ASP
147
A
VAL
150
A
VAL
150
A
THR
253
A
THR
253
A
ASP
258
A
ASP
258
A
LYS
263
A
LYS
263
A
LYS
269
A
LYS
269
BINDING SITE FOR RESIDUE ZN A 888
A
ZN
888
Software
1
BINDING SITE FOR RESIDUE GP3 A 999
A
GP3
999
Software
15
A
HIS
195
A
HIS
195
1
1_555
A
PRO
59
A
PRO
59
15
1_555
A
PRO
61
A
PRO
61
15
1_555
A
LYS
82
A
LYS
82
15
1_555
A
GLY
85
A
GLY
85
15
1_555
A
ILE
86
A
ILE
86
15
1_555
A
ARG
87
A
ARG
87
15
1_555
A
ASP
105
A
ASP
105
15
1_555
A
ARG
106
A
ARG
106
15
1_555
A
GLU
131
A
GLU
131
15
1_555
A
PHE
146
A
PHE
146
15
1_555
A
LYS
188
A
LYS
188
15
1_555
A
TRP
190
A
TRP
190
15
1_555
A
LEU
232
A
LEU
232
15
1_555
A
LYS
234
A
LYS
234
15
1_555
A
LYS
236
A
LYS
236
15
1_555
20
C 2 2 21