0.008467 0.004888 0.000000 0.000000 0.009776 0.000000 0.000000 0.000000 0.020222 0.00000 0.00000 0.00000 Horvath, M. Rosenberg, J.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 118.110 118.110 49.450 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N O N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 R C N 452 N O N 453 N C N 454 N O N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N N N 465 S C N 466 N C N 467 N O N 468 N C Y 469 N C Y 470 N C Y 471 N C Y 472 N N Y 473 N C Y 474 N C Y 475 N C Y 476 N C Y 477 N C N 478 N O N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N N N 492 S C N 493 N C N 494 N O N 495 N C Y 496 N C Y 497 N C Y 498 N C Y 499 N C Y 500 N C Y 501 N C N 502 N O N 503 N O N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N N N 516 S C N 517 N C N 518 N O N 519 N C N 520 N C N 521 N C N 522 N O N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub Y 471 N sing Y 472 N sing N 473 N sing Y 474 N sing Y 475 N doub N 476 N sing Y 477 N doub N 478 N sing Y 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N doub N 490 N sing N 491 N sing N 492 N sing N 493 N sing Y 494 N doub Y 495 N sing Y 496 N sing N 497 N sing Y 498 N doub N 499 N sing Y 500 N doub N 501 N sing Y 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N doub N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing To be Published 0353 The Integration of Recognition and Cleavage: X-Ray Structures of Pre- Transition State and Post-Reactive DNA-Eco Ri Endonuclease Complexes 10.2210/pdb1ckq/pdb pdb_00001ckq 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 MIRRORS IMAGE PLATE 1998-04-15 SINGLE WAVELENGTH M x-ray 1 1.100 1.0 F1 CHESS 1.100 SYNCHROTRON CHESS BEAMLINE F1 3967.585 DNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 1 syn polymer 30970.184 PROTEIN (ENDONUCLEASE) 1 nat polymer 18.015 water 151 nat water no no (DT)(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG) TCGCGAATTCGCG B polydeoxyribonucleotide no no SNKKQSNRLTEQHKLSQGVIGIFGDYAKAHDLAVGEVSKLVKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDLGGTL FVSNSSIKPDGGIVEVKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGDQDLMAAGNAIERSHKNISEIANFMLSES HFPYVLFLEGSNFLTENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVNHKDKSIMLQAASIYTQG DGREWDSKIMFEIMFDISTTSLRVLGRDLFEQLTSK SNKKQSNRLTEQHKLSQGVIGIFGDYAKAHDLAVGEVSKLVKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDLGGTL FVSNSSIKPDGGIVEVKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGDQDLMAAGNAIERSHKNISEIANFMLSES HFPYVLFLEGSNFLTENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVNHKDKSIMLQAASIYTQG DGREWDSKIMFEIMFDISTTSLRVLGRDLFEQLTSK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia sample 562 Escherichia coli 1 2.84 58 VAPOR DIFFUSION, HANGING DROP 7.5 pH 7.5, VAPOR DIFFUSION, HANGING DROP -23.436 1 19 B 2 B 13 2.537 B_DC2:DG13_B 1 -1.841 0.150 0.361 -0.112 -3.746 1 19 B 3 B 12 -5.498 B_DG3:DC12_B 2 -3.302 -0.203 -0.064 -0.067 1.928 1 19 B 4 B 11 -4.770 B_DC4:DG11_B 3 -3.963 0.280 -0.284 0.014 -9.480 1 19 B 5 B 10 0.868 B_DG5:DC10_B 4 1.981 -0.512 -0.333 -0.180 2.387 1 20 B 6 B 9 -2.827 B_DA6:DT9_B 5 -1.331 0.074 -0.053 0.083 0.950 1 20 B 7 B 8 -6.041 B_DA7:DT8_B 6 7.773 0.365 0.217 -0.006 -0.950 1 20 B 8 B 7 -6.041 B_DT8:DA7_B 7 7.773 -0.365 0.217 -0.006 -2.387 1 20 B 9 B 6 -2.827 B_DT9:DA6_B 8 -1.331 -0.074 -0.053 0.083 9.480 1 19 B 10 B 5 0.868 B_DC10:DG5_B 9 1.981 0.512 -0.333 -0.180 -1.928 1 19 B 11 B 4 -4.770 B_DG11:DC4_B 10 -3.963 -0.280 -0.284 0.014 3.746 1 19 B 12 B 3 -5.498 B_DC12:DG3_B 11 -3.302 0.203 -0.064 -0.067 23.436 1 19 B 13 B 2 2.537 B_DG13:DC2_B 12 -1.841 -0.150 0.361 -0.112 2.779 27.331 B B 2 3 17.943 B B 13 12 2.874 8.338 -0.224 0.222 BB_DC2DG3:DC12DG13_BB 1 2.278 -4.903 25.953 -1.370 0.976 3.324 37.097 B B 3 4 1.216 B B 12 11 3.347 0.773 -0.303 -0.503 BB_DG3DC4:DG11DC12_BB 2 1.279 -2.010 37.068 -0.896 0.650 3.794 34.090 B B 4 5 2.201 B B 11 10 3.760 1.290 0.911 -0.079 BB_DC4DG5:DC10DG11_BB 3 1.686 -2.878 34.025 -0.372 -1.244 3.360 33.209 B B 5 6 -1.244 B B 10 9 3.305 -0.711 -1.082 -0.233 BB_DG5DA6:DT9DC10_BB 4 -1.749 3.062 33.157 -0.286 1.595 2.949 37.008 B B 6 7 51.351 B B 9 8 4.063 28.680 0.525 0.483 BB_DA6DA7:DT8DT9_BB 5 -2.203 3.944 23.536 -4.377 -1.221 2.598 62.376 B B 7 8 -53.653 B B 8 7 4.646 -49.303 0.000 0.569 BB_DA7DT8:DA7DT8_BB 6 0.000 0.000 39.473 3.760 0.000 2.949 37.008 B B 8 9 51.351 B B 7 6 4.063 28.680 -0.525 0.483 BB_DT8DT9:DA6DA7_BB 7 2.203 -3.944 23.536 -4.377 1.221 3.360 33.209 B B 9 10 -1.244 B B 6 5 3.305 -0.711 1.082 -0.233 BB_DT9DC10:DG5DA6_BB 8 1.749 -3.062 33.157 -0.286 -1.595 3.794 34.090 B B 10 11 2.201 B B 5 4 3.760 1.290 -0.911 -0.079 BB_DC10DG11:DC4DG5_BB 9 -1.686 2.878 34.025 -0.372 1.244 3.324 37.097 B B 11 12 1.216 B B 4 3 3.347 0.773 0.303 -0.503 BB_DG11DC12:DG3DC4_BB 10 -1.279 2.010 37.068 -0.896 -0.650 2.779 27.331 B B 12 13 17.943 B B 3 2 2.874 8.338 0.224 0.222 BB_DC12DG13:DC2DG3_BB 11 -2.278 4.903 25.953 -1.370 -0.976 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Refinement description 1 0 1999-04-26 1 1 2007-10-16 1 2 2011-07-13 1 3 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y RCSB 1999-04-22 REL REL HOH water FIRST 15 RESIDUES ARE DISORDERED IN THE CRYSTAL STRUCTURE AND NOT SEEN IN THE ELECTRON DENSITY. 1ERI PDB ENTRY 1ERI PDB experimental model HOH 2 3 HOH HOH 14 B HOH 7 3 HOH HOH 15 B HOH 9 3 HOH HOH 16 B HOH 11 3 HOH HOH 17 B HOH 12 3 HOH HOH 18 B HOH 17 3 HOH HOH 19 B HOH 22 3 HOH HOH 20 B HOH 26 3 HOH HOH 21 B HOH 27 3 HOH HOH 22 B HOH 30 3 HOH HOH 23 B HOH 38 3 HOH HOH 24 B HOH 51 3 HOH HOH 25 B HOH 56 3 HOH HOH 26 B HOH 79 3 HOH HOH 27 B HOH 87 3 HOH HOH 28 B HOH 106 3 HOH HOH 29 B HOH 115 3 HOH HOH 30 B HOH 136 3 HOH HOH 31 B HOH 138 3 HOH HOH 32 B HOH 1 3 HOH HOH 278 A HOH 3 3 HOH HOH 279 A HOH 4 3 HOH HOH 280 A HOH 5 3 HOH HOH 281 A HOH 6 3 HOH HOH 282 A HOH 8 3 HOH HOH 283 A HOH 10 3 HOH HOH 284 A HOH 13 3 HOH HOH 285 A HOH 14 3 HOH HOH 286 A HOH 15 3 HOH HOH 287 A HOH 16 3 HOH HOH 288 A HOH 18 3 HOH HOH 289 A HOH 19 3 HOH HOH 290 A HOH 20 3 HOH HOH 291 A HOH 21 3 HOH HOH 292 A HOH 23 3 HOH HOH 293 A HOH 24 3 HOH HOH 294 A HOH 25 3 HOH HOH 295 A HOH 28 3 HOH HOH 296 A HOH 29 3 HOH HOH 297 A HOH 31 3 HOH HOH 298 A HOH 32 3 HOH HOH 299 A HOH 33 3 HOH HOH 300 A HOH 34 3 HOH HOH 301 A HOH 35 3 HOH HOH 302 A HOH 36 3 HOH HOH 303 A HOH 37 3 HOH HOH 304 A HOH 39 3 HOH HOH 305 A HOH 40 3 HOH HOH 306 A HOH 41 3 HOH HOH 307 A HOH 42 3 HOH HOH 308 A HOH 43 3 HOH HOH 309 A HOH 44 3 HOH HOH 310 A HOH 45 3 HOH HOH 311 A HOH 46 3 HOH HOH 312 A HOH 47 3 HOH HOH 313 A HOH 48 3 HOH HOH 314 A HOH 49 3 HOH HOH 315 A HOH 50 3 HOH HOH 316 A HOH 52 3 HOH HOH 317 A HOH 53 3 HOH HOH 318 A HOH 54 3 HOH HOH 319 A HOH 55 3 HOH HOH 320 A HOH 57 3 HOH HOH 321 A HOH 58 3 HOH HOH 322 A HOH 59 3 HOH HOH 323 A HOH 60 3 HOH HOH 324 A HOH 61 3 HOH HOH 325 A HOH 62 3 HOH HOH 326 A HOH 63 3 HOH HOH 327 A HOH 64 3 HOH HOH 328 A HOH 65 3 HOH HOH 329 A HOH 66 3 HOH HOH 330 A HOH 67 3 HOH HOH 331 A HOH 68 3 HOH HOH 332 A HOH 69 3 HOH HOH 333 A HOH 70 3 HOH HOH 334 A HOH 71 3 HOH HOH 335 A HOH 72 3 HOH HOH 336 A HOH 73 3 HOH HOH 337 A HOH 74 3 HOH HOH 338 A HOH 75 3 HOH HOH 339 A HOH 76 3 HOH HOH 340 A HOH 77 3 HOH HOH 341 A HOH 78 3 HOH HOH 342 A HOH 80 3 HOH HOH 343 A HOH 81 3 HOH HOH 344 A HOH 82 3 HOH HOH 345 A HOH 83 3 HOH HOH 346 A HOH 84 3 HOH HOH 347 A HOH 85 3 HOH HOH 348 A HOH 86 3 HOH HOH 349 A HOH 88 3 HOH HOH 350 A HOH 89 3 HOH HOH 351 A HOH 90 3 HOH HOH 352 A HOH 91 3 HOH HOH 353 A HOH 92 3 HOH HOH 354 A HOH 93 3 HOH HOH 355 A HOH 94 3 HOH HOH 356 A HOH 95 3 HOH HOH 357 A HOH 96 3 HOH HOH 358 A HOH 97 3 HOH HOH 359 A HOH 98 3 HOH HOH 360 A HOH 100 3 HOH HOH 361 A HOH 101 3 HOH HOH 362 A HOH 102 3 HOH HOH 363 A HOH 103 3 HOH HOH 364 A HOH 104 3 HOH HOH 365 A HOH 105 3 HOH HOH 366 A HOH 107 3 HOH HOH 367 A HOH 108 3 HOH HOH 368 A HOH 109 3 HOH HOH 369 A HOH 110 3 HOH HOH 370 A HOH 111 3 HOH HOH 371 A HOH 112 3 HOH HOH 372 A HOH 113 3 HOH HOH 373 A HOH 114 3 HOH HOH 374 A HOH 116 3 HOH HOH 375 A HOH 117 3 HOH HOH 376 A HOH 118 3 HOH HOH 377 A HOH 119 3 HOH HOH 378 A HOH 120 3 HOH HOH 379 A HOH 121 3 HOH HOH 380 A HOH 122 3 HOH HOH 381 A HOH 123 3 HOH HOH 382 A HOH 124 3 HOH HOH 383 A HOH 125 3 HOH HOH 384 A HOH 126 3 HOH HOH 385 A HOH 127 3 HOH HOH 386 A HOH 128 3 HOH HOH 387 A HOH 129 3 HOH HOH 388 A HOH 130 3 HOH HOH 389 A HOH 131 3 HOH HOH 390 A HOH 132 3 HOH HOH 391 A HOH 133 3 HOH HOH 392 A HOH 134 3 HOH HOH 393 A HOH 135 3 HOH HOH 394 A HOH 137 3 HOH HOH 395 A HOH 139 3 HOH HOH 396 A HOH 140 3 HOH HOH 397 A HOH 141 3 HOH HOH 398 A HOH 142 3 HOH HOH 399 A HOH 143 3 HOH HOH 400 A HOH 144 3 HOH HOH 401 A HOH 145 3 HOH HOH 402 A HOH 146 3 HOH HOH 403 A HOH 147 3 HOH HOH 404 A HOH 148 3 HOH HOH 405 A HOH 149 3 HOH HOH 406 A HOH 150 3 HOH HOH 407 A HOH 151 3 HOH HOH 408 A HOH 152 3 HOH HOH 409 A T 1 n 1 DT 1 B C 2 n 2 DC 2 B G 3 n 3 DG 3 B C 4 n 4 DC 4 B G 5 n 5 DG 5 B A 6 n 6 DA 6 B A 7 n 7 DA 7 B T 8 n 8 DT 8 B T 9 n 9 DT 9 B C 10 n 10 DC 10 B G 11 n 11 DG 11 B C 12 n 12 DC 12 B G 13 n 13 DG 13 B n 1 2 A n 2 3 A n 3 4 A n 4 5 A n 5 6 A n 6 7 A n 7 8 A n 8 9 A n 9 10 A n 10 11 A n 11 12 A n 12 13 A n 13 14 A n 14 15 A n 15 16 A SER 17 n 16 SER 17 A GLN 18 n 17 GLN 18 A GLY 19 n 18 GLY 19 A VAL 20 n 19 VAL 20 A ILE 21 n 20 ILE 21 A GLY 22 n 21 GLY 22 A ILE 23 n 22 ILE 23 A PHE 24 n 23 PHE 24 A GLY 25 n 24 GLY 25 A ASP 26 n 25 ASP 26 A TYR 27 n 26 TYR 27 A ALA 28 n 27 ALA 28 A LYS 29 n 28 LYS 29 A ALA 30 n 29 ALA 30 A HIS 31 n 30 HIS 31 A ASP 32 n 31 ASP 32 A LEU 33 n 32 LEU 33 A ALA 34 n 33 ALA 34 A VAL 35 n 34 VAL 35 A GLY 36 n 35 GLY 36 A GLU 37 n 36 GLU 37 A VAL 38 n 37 VAL 38 A SER 39 n 38 SER 39 A LYS 40 n 39 LYS 40 A LEU 41 n 40 LEU 41 A VAL 42 n 41 VAL 42 A LYS 43 n 42 LYS 43 A LYS 44 n 43 LYS 44 A ALA 45 n 44 ALA 45 A LEU 46 n 45 LEU 46 A SER 47 n 46 SER 47 A ASN 48 n 47 ASN 48 A GLU 49 n 48 GLU 49 A TYR 50 n 49 TYR 50 A PRO 51 n 50 PRO 51 A GLN 52 n 51 GLN 52 A LEU 53 n 52 LEU 53 A SER 54 n 53 SER 54 A PHE 55 n 54 PHE 55 A ARG 56 n 55 ARG 56 A TYR 57 n 56 TYR 57 A ARG 58 n 57 ARG 58 A ASP 59 n 58 ASP 59 A SER 60 n 59 SER 60 A ILE 61 n 60 ILE 61 A LYS 62 n 61 LYS 62 A LYS 63 n 62 LYS 63 A THR 64 n 63 THR 64 A GLU 65 n 64 GLU 65 A ILE 66 n 65 ILE 66 A ASN 67 n 66 ASN 67 A GLU 68 n 67 GLU 68 A ALA 69 n 68 ALA 69 A LEU 70 n 69 LEU 70 A LYS 71 n 70 LYS 71 A LYS 72 n 71 LYS 72 A ILE 73 n 72 ILE 73 A ASP 74 n 73 ASP 74 A PRO 75 n 74 PRO 75 A ASP 76 n 75 ASP 76 A LEU 77 n 76 LEU 77 A GLY 78 n 77 GLY 78 A GLY 79 n 78 GLY 79 A THR 80 n 79 THR 80 A LEU 81 n 80 LEU 81 A PHE 82 n 81 PHE 82 A VAL 83 n 82 VAL 83 A SER 84 n 83 SER 84 A ASN 85 n 84 ASN 85 A SER 86 n 85 SER 86 A SER 87 n 86 SER 87 A ILE 88 n 87 ILE 88 A LYS 89 n 88 LYS 89 A PRO 90 n 89 PRO 90 A ASP 91 n 90 ASP 91 A GLY 92 n 91 GLY 92 A GLY 93 n 92 GLY 93 A ILE 94 n 93 ILE 94 A VAL 95 n 94 VAL 95 A GLU 96 n 95 GLU 96 A VAL 97 n 96 VAL 97 A LYS 98 n 97 LYS 98 A ASP 99 n 98 ASP 99 A ASP 100 n 99 ASP 100 A TYR 101 n 100 TYR 101 A GLY 102 n 101 GLY 102 A GLU 103 n 102 GLU 103 A TRP 104 n 103 TRP 104 A ARG 105 n 104 ARG 105 A VAL 106 n 105 VAL 106 A VAL 107 n 106 VAL 107 A LEU 108 n 107 LEU 108 A VAL 109 n 108 VAL 109 A ALA 110 n 109 ALA 110 A GLU 111 n 110 GLU 111 A ALA 112 n 111 ALA 112 A LYS 113 n 112 LYS 113 A HIS 114 n 113 HIS 114 A GLN 115 n 114 GLN 115 A GLY 116 n 115 GLY 116 A LYS 117 n 116 LYS 117 A ASP 118 n 117 ASP 118 A ILE 119 n 118 ILE 119 A ILE 120 n 119 ILE 120 A ASN 121 n 120 ASN 121 A ILE 122 n 121 ILE 122 A ARG 123 n 122 ARG 123 A ASN 124 n 123 ASN 124 A GLY 125 n 124 GLY 125 A LEU 126 n 125 LEU 126 A LEU 127 n 126 LEU 127 A VAL 128 n 127 VAL 128 A GLY 129 n 128 GLY 129 A LYS 130 n 129 LYS 130 A ARG 131 n 130 ARG 131 A GLY 132 n 131 GLY 132 A ASP 133 n 132 ASP 133 A GLN 134 n 133 GLN 134 A ASP 135 n 134 ASP 135 A LEU 136 n 135 LEU 136 A MET 137 n 136 MET 137 A ALA 138 n 137 ALA 138 A ALA 139 n 138 ALA 139 A GLY 140 n 139 GLY 140 A ASN 141 n 140 ASN 141 A ALA 142 n 141 ALA 142 A ILE 143 n 142 ILE 143 A GLU 144 n 143 GLU 144 A ARG 145 n 144 ARG 145 A SER 146 n 145 SER 146 A HIS 147 n 146 HIS 147 A LYS 148 n 147 LYS 148 A ASN 149 n 148 ASN 149 A ILE 150 n 149 ILE 150 A SER 151 n 150 SER 151 A GLU 152 n 151 GLU 152 A ILE 153 n 152 ILE 153 A ALA 154 n 153 ALA 154 A ASN 155 n 154 ASN 155 A PHE 156 n 155 PHE 156 A MET 157 n 156 MET 157 A LEU 158 n 157 LEU 158 A SER 159 n 158 SER 159 A GLU 160 n 159 GLU 160 A SER 161 n 160 SER 161 A HIS 162 n 161 HIS 162 A PHE 163 n 162 PHE 163 A PRO 164 n 163 PRO 164 A TYR 165 n 164 TYR 165 A VAL 166 n 165 VAL 166 A LEU 167 n 166 LEU 167 A PHE 168 n 167 PHE 168 A LEU 169 n 168 LEU 169 A GLU 170 n 169 GLU 170 A GLY 171 n 170 GLY 171 A SER 172 n 171 SER 172 A ASN 173 n 172 ASN 173 A PHE 174 n 173 PHE 174 A LEU 175 n 174 LEU 175 A THR 176 n 175 THR 176 A GLU 177 n 176 GLU 177 A ASN 178 n 177 ASN 178 A ILE 179 n 178 ILE 179 A SER 180 n 179 SER 180 A ILE 181 n 180 ILE 181 A THR 182 n 181 THR 182 A ARG 183 n 182 ARG 183 A PRO 184 n 183 PRO 184 A ASP 185 n 184 ASP 185 A GLY 186 n 185 GLY 186 A ARG 187 n 186 ARG 187 A VAL 188 n 187 VAL 188 A VAL 189 n 188 VAL 189 A ASN 190 n 189 ASN 190 A LEU 191 n 190 LEU 191 A GLU 192 n 191 GLU 192 A TYR 193 n 192 TYR 193 A ASN 194 n 193 ASN 194 A SER 195 n 194 SER 195 A GLY 196 n 195 GLY 196 A ILE 197 n 196 ILE 197 A LEU 198 n 197 LEU 198 A ASN 199 n 198 ASN 199 A ARG 200 n 199 ARG 200 A LEU 201 n 200 LEU 201 A ASP 202 n 201 ASP 202 A ARG 203 n 202 ARG 203 A LEU 204 n 203 LEU 204 A THR 205 n 204 THR 205 A ALA 206 n 205 ALA 206 A ALA 207 n 206 ALA 207 A ASN 208 n 207 ASN 208 A TYR 209 n 208 TYR 209 A GLY 210 n 209 GLY 210 A MET 211 n 210 MET 211 A PRO 212 n 211 PRO 212 A ILE 213 n 212 ILE 213 A ASN 214 n 213 ASN 214 A SER 215 n 214 SER 215 A ASN 216 n 215 ASN 216 A LEU 217 n 216 LEU 217 A CYS 218 n 217 CYS 218 A ILE 219 n 218 ILE 219 A ASN 220 n 219 ASN 220 A LYS 221 n 220 LYS 221 A PHE 222 n 221 PHE 222 A VAL 223 n 222 VAL 223 A ASN 224 n 223 ASN 224 A HIS 225 n 224 HIS 225 A LYS 226 n 225 LYS 226 A ASP 227 n 226 ASP 227 A LYS 228 n 227 LYS 228 A SER 229 n 228 SER 229 A ILE 230 n 229 ILE 230 A MET 231 n 230 MET 231 A LEU 232 n 231 LEU 232 A GLN 233 n 232 GLN 233 A ALA 234 n 233 ALA 234 A ALA 235 n 234 ALA 235 A SER 236 n 235 SER 236 A ILE 237 n 236 ILE 237 A TYR 238 n 237 TYR 238 A THR 239 n 238 THR 239 A GLN 240 n 239 GLN 240 A GLY 241 n 240 GLY 241 A ASP 242 n 241 ASP 242 A GLY 243 n 242 GLY 243 A ARG 244 n 243 ARG 244 A GLU 245 n 244 GLU 245 A TRP 246 n 245 TRP 246 A ASP 247 n 246 ASP 247 A SER 248 n 247 SER 248 A LYS 249 n 248 LYS 249 A ILE 250 n 249 ILE 250 A MET 251 n 250 MET 251 A PHE 252 n 251 PHE 252 A GLU 253 n 252 GLU 253 A ILE 254 n 253 ILE 254 A MET 255 n 254 MET 255 A PHE 256 n 255 PHE 256 A ASP 257 n 256 ASP 257 A ILE 258 n 257 ILE 258 A SER 259 n 258 SER 259 A THR 260 n 259 THR 260 A THR 261 n 260 THR 261 A SER 262 n 261 SER 262 A LEU 263 n 262 LEU 263 A ARG 264 n 263 ARG 264 A VAL 265 n 264 VAL 265 A LEU 266 n 265 LEU 266 A GLY 267 n 266 GLY 267 A ARG 268 n 267 ARG 268 A ASP 269 n 268 ASP 269 A LEU 270 n 269 LEU 270 A PHE 271 n 270 PHE 271 A GLU 272 n 271 GLU 272 A GLN 273 n 272 GLN 273 A LEU 274 n 273 LEU 274 A THR 275 n 274 THR 275 A SER 276 n 275 SER 276 A LYS 277 n 276 LYS 277 A author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O ARG 56 B O ARG 55 A N GLU 96 B N GLU 95 A O VAL 95 B O VAL 94 A N LEU 108 B N LEU 107 A O VAL 109 B O VAL 108 A N VAL 166 B N VAL 165 A O LEU 167 B O LEU 166 A N SER 236 B N SER 235 A O ILE 179 B O ILE 178 A N LEU 191 B N LEU 190 A O LYS 221 B O LYS 220 A N LEU 232 B N LEU 231 1 A SER 2 B SER 1 1 Y 1 A ASN 3 B ASN 2 1 Y 1 A LYS 4 B LYS 3 1 Y 1 A LYS 5 B LYS 4 1 Y 1 A GLN 6 B GLN 5 1 Y 1 A SER 7 B SER 6 1 Y 1 A ASN 8 B ASN 7 1 Y 1 A ARG 9 B ARG 8 1 Y 1 A LEU 10 B LEU 9 1 Y 1 A THR 11 B THR 10 1 Y 1 A GLU 12 B GLU 11 1 Y 1 A GLN 13 B GLN 12 1 Y 1 A HIS 14 B HIS 13 1 Y 1 A LYS 15 B LYS 14 1 Y 1 A LEU 16 B LEU 15 1 Y 1 B DT 8 0.062 SIDE CHAIN 1 A LEU 81 -164.62 111.78 1 A ASN 85 -103.43 43.69 1 A PRO 164 -81.34 48.40 1 A ASN 224 -174.42 136.51 1 A HIS 225 -84.22 -70.81 1 A ASP 227 51.83 74.58 1 A LYS 228 -141.11 -52.53 1 A SER 229 73.68 118.67 1 A SER 276 -84.86 44.87 PARHCSDX.PRO TOPHCSDX.PRO PARAM11.WAT TOPH19.PEP DNA-RNA.PARAM TOPH11.WAT DNA-RNA.TOP 38.3 0.2860000 0.2350000 0.2350000 1.85 8 3025 27076 10 99 RANDOM 10000000 0.001 1 RESTRAINED RFREE 2 OTHER PDB ENTRY 1ERI .34 .30 8 .31 .28 1.85 8 151 2465 0 263 2051 0.003 1.026 0.889 0.3858000 0.3798000 1.93 109 801 8 12.0 91 1.85 8 1CKQ 32270 2 0.1240000 1 22.2 10.6 99.1 0.4460000 1.85 1.91 2 4.1 91.1 refinement X-PLOR 3.851 data reduction DENZO data scaling SCALEPACK PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEX 1 N N 2 N N 3 N N 3 N N ECO RI IS A DIMER. THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT CONSISTS OF A MONOMER AND THE COORDINATES OF THIS MONOMER ARE PRESENTED IN THIS ENTRY. TO GENERATE THE DIMER AND THE OTHER HALF OF THE DNA DUPLEX ONE MUST APPLY THE FOLLOWING CRYSTALLOGRAPHIC TWO-FOLD TRANSFORMATION TO THE COORDINATES IN THIS ENTRY - -.5 .866025 0.0 .866025 .5 0.0 0.0 0.0 -1.0 A GLY 19 B GLY 18 HELX_P A HIS 31 B HIS 30 5 1 13 A VAL 35 B VAL 34 HELX_P A GLU 49 B GLU 48 1 2 15 A LYS 63 B LYS 62 HELX_P A ILE 73 B ILE 72 1 3 11 A ASP 118 B ASP 117 HELX_P A ARG 123 B ARG 122 1 4 6 A ALA 142 B ALA 141 HELX_P A PHE 156 B PHE 155 5 5 15 A LEU 201 B LEU 200 HELX_P A ARG 203 B ARG 202 5 6 3 A THR 205 B THR 204 HELX_P A ASN 208 B ASN 207 5 7 4 A SER 248 B SER 247 HELX_P A VAL 265 B VAL 264 1 8 18 A GLY 267 B GLY 266 HELX_P A ASP 269 B ASP 268 5 9 3 A PHE 271 B PHE 270 HELX_P A THR 275 B THR 274 1 10 5 hydrog WATSON-CRICK B DC 2 A N3 DC 2 1_555 B DG 13 A N1 DG 13 4_555 hydrog WATSON-CRICK B DC 2 A N4 DC 2 1_555 B DG 13 A O6 DG 13 4_555 hydrog WATSON-CRICK B DC 2 A O2 DC 2 1_555 B DG 13 A N2 DG 13 4_555 hydrog WATSON-CRICK B DG 3 A N1 DG 3 1_555 B DC 12 A N3 DC 12 4_555 hydrog WATSON-CRICK B DG 3 A N2 DG 3 1_555 B DC 12 A O2 DC 12 4_555 hydrog WATSON-CRICK B DG 3 A O6 DG 3 1_555 B DC 12 A N4 DC 12 4_555 hydrog WATSON-CRICK B DC 4 A N3 DC 4 1_555 B DG 11 A N1 DG 11 4_555 hydrog WATSON-CRICK B DC 4 A N4 DC 4 1_555 B DG 11 A O6 DG 11 4_555 hydrog WATSON-CRICK B DC 4 A O2 DC 4 1_555 B DG 11 A N2 DG 11 4_555 hydrog WATSON-CRICK B DG 5 A N1 DG 5 1_555 B DC 10 A N3 DC 10 4_555 hydrog WATSON-CRICK B DG 5 A N2 DG 5 1_555 B DC 10 A O2 DC 10 4_555 hydrog WATSON-CRICK B DG 5 A O6 DG 5 1_555 B DC 10 A N4 DC 10 4_555 hydrog WATSON-CRICK B DA 6 A N1 DA 6 1_555 B DT 9 A N3 DT 9 4_555 hydrog WATSON-CRICK B DA 6 A N6 DA 6 1_555 B DT 9 A O4 DT 9 4_555 hydrog WATSON-CRICK B DA 7 A N1 DA 7 1_555 B DT 8 A N3 DT 8 4_555 hydrog WATSON-CRICK B DA 7 A N6 DA 7 1_555 B DT 8 A O4 DT 8 4_555 hydrog WATSON-CRICK B DT 8 A N3 DT 8 1_555 B DA 7 A N1 DA 7 4_555 hydrog WATSON-CRICK B DT 8 A O4 DT 8 1_555 B DA 7 A N6 DA 7 4_555 hydrog WATSON-CRICK B DT 9 A N3 DT 9 1_555 B DA 6 A N1 DA 6 4_555 hydrog WATSON-CRICK B DT 9 A O4 DT 9 1_555 B DA 6 A N6 DA 6 4_555 hydrog WATSON-CRICK B DC 10 A N3 DC 10 1_555 B DG 5 A N1 DG 5 4_555 hydrog WATSON-CRICK B DC 10 A N4 DC 10 1_555 B DG 5 A O6 DG 5 4_555 hydrog WATSON-CRICK B DC 10 A O2 DC 10 1_555 B DG 5 A N2 DG 5 4_555 hydrog WATSON-CRICK B DG 11 A N1 DG 11 1_555 B DC 4 A N3 DC 4 4_555 hydrog WATSON-CRICK B DG 11 A N2 DG 11 1_555 B DC 4 A O2 DC 4 4_555 hydrog WATSON-CRICK B DG 11 A O6 DG 11 1_555 B DC 4 A N4 DC 4 4_555 hydrog WATSON-CRICK B DC 12 A N3 DC 12 1_555 B DG 3 A N1 DG 3 4_555 hydrog WATSON-CRICK B DC 12 A N4 DC 12 1_555 B DG 3 A O6 DG 3 4_555 hydrog WATSON-CRICK B DC 12 A O2 DC 12 1_555 B DG 3 A N2 DG 3 4_555 hydrog WATSON-CRICK B DG 13 A N1 DG 13 1_555 B DC 2 A N3 DC 2 4_555 hydrog WATSON-CRICK B DG 13 A N2 DG 13 1_555 B DC 2 A O2 DC 2 4_555 hydrog WATSON-CRICK B DG 13 A O6 DG 13 1_555 B DC 2 A N4 DC 2 4_555 PROTEIN/DNA SEQUENCE-SPECIFIC DNA-PROTEIN COMPLEX, PROTEIN-DNA COMPLEX T2E1_ECOLI UNP 2 P00642 1CKQ PDB 1 1CKQ 1 276 1CKQ 2 277 P00642 A 1 1 276 1 13 1CKQ 1 13 1CKQ B 2 1 13 5 2 2 anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel A PHE 55 B PHE 54 A ARG 58 B ARG 57 A ILE 94 B ILE 93 A LYS 98 B LYS 97 A TRP 104 B TRP 103 A HIS 114 B HIS 113 A TYR 165 B TYR 164 A GLU 170 B GLU 169 A SER 236 B SER 235 A THR 239 B THR 238 A ILE 179 B ILE 178 A THR 182 B THR 181 A VAL 188 B VAL 187 A LEU 191 B LEU 190 A LYS 221 B LYS 220 A VAL 223 B VAL 222 A ILE 230 B ILE 229 A LEU 232 B LEU 231 PROTEIN RECOGNTION RESIDUES GROUPS THAT HYDROGEN BOND TO THE DNA BASES AND/OR PROVIDE PRIMARY BUTTRESSING. Author 9 DNA RECOGNITION SEQUENCE THIS IS THE DNA TARGET RECOGNIZED BY THE PROTEIN Author 6 A ALA 138 B ALA 137 9 1_555 A ASN 141 B ASN 140 9 1_555 A ALA 142 B ALA 141 9 1_555 A GLU 144 B GLU 143 9 1_555 A ARG 145 B ARG 144 9 1_555 A ARG 200 B ARG 199 9 1_555 A ARG 203 B ARG 202 9 1_555 A HOH 278 D HOH 9 1_555 B HOH 14 C HOH 9 1_555 B DG 5 A DG 5 6 1_555 B DA 6 A DA 6 6 1_555 B DA 7 A DA 7 6 1_555 B DT 8 A DT 8 6 1_555 B DT 9 A DT 9 6 1_555 B DC 10 A DC 10 6 1_555 150 trigonal P 3 2 1