0.009505
0.000000
0.001645
0.000000
0.019837
0.000000
0.000000
0.000000
0.019102
0.00000
0.00000
0.00000
Ohndorf, U.-M.
Rould, M.A.
Pabo, C.O.
Lippard, S.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
99.82
90.00
105.210
50.410
53.130
C9 H12 I N2 O8 P
434.078
n
5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl2 H6 N2 Pt
300.045
Cisplatin
diammine(dichloro)platinum
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
O
N
8
N
O
N
9
N
I
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
N
N
35
S
C
N
36
N
C
N
37
N
O
N
38
N
C
N
39
N
O
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
N
N
48
S
C
N
49
N
C
N
50
N
O
N
51
N
C
N
52
N
C
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
N
N
58
N
O
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
O
N
81
N
N
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
N
N
92
S
C
N
93
N
C
N
94
N
O
N
95
N
C
N
96
N
C
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
PT
N
108
N
N
N
109
N
N
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
CL
N
115
N
CL
N
116
N
H
N
117
N
H
N
118
N
N
N
119
R
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
S
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
O
N
133
N
P
N
134
N
O
N
135
N
O
N
136
N
O
N
137
N
C
N
138
R
C
N
139
N
O
N
140
S
C
N
141
N
O
N
142
N
C
N
143
R
C
Y
144
N
N
Y
145
N
C
Y
146
N
N
Y
147
N
C
Y
148
N
C
N
149
N
N
Y
150
N
N
Y
151
N
C
Y
152
N
N
Y
153
N
C
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
O
N
169
N
P
N
170
N
O
N
171
N
O
N
172
N
O
N
173
N
C
N
174
R
C
N
175
N
O
N
176
S
C
N
177
N
O
N
178
N
C
N
179
R
C
N
180
N
N
N
181
N
C
N
182
N
O
N
183
N
N
N
184
N
C
N
185
N
N
N
186
N
C
N
187
N
C
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
O
N
203
N
P
N
204
N
O
N
205
N
O
N
206
N
O
N
207
N
C
N
208
R
C
N
209
N
O
N
210
S
C
N
211
N
O
N
212
N
C
N
213
R
C
Y
214
N
N
Y
215
N
C
Y
216
N
N
Y
217
N
C
N
218
N
C
N
219
N
O
N
220
N
N
N
221
N
C
N
222
N
N
N
223
N
N
Y
224
N
C
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
O
N
240
N
P
N
241
N
O
N
242
N
O
N
243
N
O
N
244
N
C
N
245
R
C
N
246
N
O
N
247
S
C
N
248
N
O
N
249
N
C
N
250
R
C
N
251
N
N
N
252
N
C
N
253
N
O
N
254
N
N
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
O
N
283
N
N
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
O
N
303
N
O
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
N
C
N
316
N
C
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
N
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
R
C
N
452
N
O
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
N
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
N
N
492
S
C
N
493
N
C
N
494
N
O
N
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
N
502
N
O
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
N
520
N
C
N
521
N
C
N
522
N
O
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
doub
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
doub
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
Y
150
N
sing
Y
151
N
sing
Y
152
N
doub
N
153
N
sing
Y
154
N
sing
Y
155
N
sing
Y
156
N
doub
N
157
N
sing
Y
158
N
doub
N
159
N
sing
N
160
N
sing
Y
161
N
sing
Y
162
N
doub
N
163
N
sing
Y
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
Y
223
N
sing
Y
224
N
sing
Y
225
N
doub
N
226
N
sing
Y
227
N
sing
N
228
N
sing
Y
229
N
doub
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
Y
333
N
sing
Y
334
N
doub
Y
335
N
doub
N
336
N
sing
Y
337
N
sing
N
338
N
sing
Y
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
doub
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
doub
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
Y
468
N
doub
Y
469
N
sing
Y
470
N
sing
N
471
N
sing
Y
472
N
doub
Y
473
N
sing
Y
474
N
sing
N
475
N
sing
Y
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
doub
N
480
N
sing
Y
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
doub
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
Y
496
N
doub
Y
497
N
sing
Y
498
N
sing
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
doub
N
503
N
sing
Y
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
doub
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
UK
Nature
NATUAS
0006
0028-0836
399
708
712
10.1038/21460
10385126
Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins.
1999
10.2210/pdb1ckt/pdb
pdb_00001ckt
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
123
1
IMAGE PLATE
RIGAKU RAXIS IIC
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
4872.949
DNA (5'-D(*CP*CP*(5IU)P*CP*TP*CP*TP*GP*GP*AP*CP*CP*TP*TP*CP*C)-3')
1
syn
polymer
5037.280
DNA (5'-D(*GP*GP*AP*AP*GP*GP*TP*CP*CP*AP*GP*AP*GP*AP*GP*G)-3')
1
syn
polymer
8497.785
HIGH MOBILITY GROUP 1 PROTEIN
RESIDUES 8-78, DOMAIN A
1
man
polymer
300.045
Cisplatin
1
syn
non-polymer
18.015
water
74
nat
water
HMG-1, AMPHOTERIN, HEPARIN-BINDING PROTEIN P30
no
yes
(DC)(DC)(5IU)(DC)(DT)(DC)(DT)(DG)(DG)(DA)(DC)(DC)(DT)(DT)(DC)(DC)
CCUCTCTGGACCTTCC
B
polydeoxyribonucleotide
no
no
(DG)(DG)(DA)(DA)(DG)(DG)(DT)(DC)(DC)(DA)(DG)(DA)(DG)(DA)(DG)(DG)
GGAAGGTCCAGAGAGG
C
polydeoxyribonucleotide
no
no
KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY
KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
SORAGYE-DAWLEY
LIVER
Escherichia
Escherichia coli
sample
10116
Rattus norvegicus
HMG1 DOMAIN A (M1-F89)
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PT7-HMG1BA
3
3.71
69
VAPOR DIFFUSION, HANGING DROP
6.5
CRYSTALS WERE OBTAINED FROM A SOLUTION THAT CONTAINED HEPES, MAGNESIUM ACETATE, PEG 3350, GLYCEROL AND DTT, pH 6.5, VAPOR DIFFUSION, HANGING DROP
MAGNESIUM ACETATE
1
HEPES
1
PEG 3350
1
GLYCEROL
1
DTT
1
2.121
1
19
B
101
C
216
0.631
B_DC101:DG216_C
1
-7.051
-0.323
0.002
-0.226
-11.316
1
19
B
102
C
215
4.789
B_DC102:DG215_C
2
-2.624
-0.060
0.407
-0.136
5.930
1
20
B
103
C
214
1.438
B_5IU103:DA214_C
3
-7.015
0.239
-0.453
-0.172
-1.191
1
19
B
104
C
213
-1.739
B_DC104:DG213_C
4
-9.197
-0.146
0.148
0.078
2.690
1
20
B
105
C
212
-4.787
B_DT105:DA212_C
5
-10.547
-0.503
-0.045
-0.334
-2.043
1
19
B
106
C
211
1.190
B_DC106:DG211_C
6
-8.243
0.091
0.106
-0.308
8.068
1
20
B
107
C
210
-4.570
B_DT107:DA210_C
7
1.675
0.138
0.341
-0.207
30.429
1
19
B
108
C
209
-1.465
B_DG108:DC209_C
8
-5.037
-0.816
0.444
-0.445
-10.843
1
19
B
109
C
208
-7.052
B_DG109:DC208_C
9
9.538
-0.067
-0.504
-0.365
6.309
1
20
B
110
C
207
-7.046
B_DA110:DT207_C
10
-6.461
0.368
0.320
0.058
13.715
1
19
B
111
C
206
0.417
B_DC111:DG206_C
11
-15.802
0.130
-0.079
-0.088
-3.564
1
19
B
112
C
205
-5.938
B_DC112:DG205_C
12
-12.180
-0.145
0.285
-0.196
-0.620
1
20
B
113
C
204
-5.601
B_DT113:DA204_C
13
-13.640
-0.331
0.231
-0.120
-2.402
1
20
B
114
C
203
-5.721
B_DT114:DA203_C
14
-17.563
-0.231
-0.221
-0.171
-5.348
1
19
B
115
C
202
1.191
B_DC115:DG202_C
15
-8.951
-0.251
-0.114
-0.093
2.196
1
19
B
116
C
201
-4.683
B_DC116:DG201_C
16
-5.785
-0.359
-0.326
-0.239
3.520
35.553
B
B
101
102
2.343
C
C
216
215
3.612
1.430
0.762
-0.873
BB_DC101DC102:DG215DG216_CC
1
-2.346
3.845
35.450
-1.657
-1.622
2.635
31.604
B
B
102
103
-0.043
C
C
215
214
2.947
-0.023
-0.989
-0.718
BB_DC1025IU103:DA214DG215_CC
2
7.578
-14.044
30.705
-1.315
3.032
3.490
33.126
B
B
103
104
5.260
C
C
214
213
3.540
2.981
-0.363
-0.533
BB_5IU103DC104:DG213DA214_CC
3
-5.732
10.115
32.507
-1.479
-0.411
3.019
33.727
B
B
104
105
7.464
C
C
213
212
3.086
4.317
-0.116
-0.258
BB_DC104DT105:DA212DG213_CC
4
1.969
-3.404
33.401
-1.101
0.499
3.396
36.014
B
B
105
106
7.716
C
C
212
211
3.409
4.757
0.646
-0.021
BB_DT105DC106:DG211DA212_CC
5
1.108
-1.797
35.692
-0.740
-0.880
3.251
32.066
B
B
106
107
12.554
C
C
211
210
3.221
6.883
-0.365
0.444
BB_DC106DT107:DA210DG211_CC
6
-0.846
1.543
31.326
-0.437
0.509
3.244
28.797
B
B
107
108
-3.991
C
C
210
209
3.047
-1.944
1.494
1.837
BB_DT107DG108:DC209DA210_CC
7
9.952
-20.431
26.988
4.127
-0.790
0.798
62.507
B
B
108
109
77.485
C
C
209
208
5.633
60.609
-0.342
-0.624
BB_DG108DG109:DC208DC209_CC
8
-6.761
8.644
14.423
-5.413
-0.208
3.089
37.338
B
B
109
110
10.753
C
C
208
207
3.042
6.809
-0.905
-0.102
BB_DG109DA110:DT207DC208_CC
9
-7.041
11.120
36.075
-1.017
0.526
2.862
30.768
B
B
110
111
15.073
C
C
207
206
3.118
7.905
0.883
-0.841
BB_DA110DC111:DG206DT207_CC
10
2.244
-4.279
29.676
-3.025
-1.256
3.452
39.661
B
B
111
112
13.836
C
C
206
205
3.633
9.307
0.135
-0.390
BB_DC111DC112:DG205DG206_CC
11
0.045
-0.067
38.597
-1.768
-0.193
3.163
30.623
B
B
112
113
7.534
C
C
205
204
3.233
3.968
-0.780
-0.109
BB_DC112DT113:DA204DG205_CC
12
1.129
-2.143
30.350
-0.976
1.696
3.182
38.491
B
B
113
114
-0.826
C
C
204
203
3.200
-0.544
-0.174
-0.273
BB_DT113DT114:DA203DA204_CC
13
2.939
-4.463
38.379
-0.348
0.621
3.368
40.495
B
B
114
115
0.051
C
C
203
202
3.265
0.036
1.312
0.353
BB_DT114DC115:DG202DA203_CC
14
3.741
-5.413
40.329
0.506
-1.470
3.063
28.248
B
B
115
116
8.188
C
C
202
201
3.111
3.982
-0.681
0.118
BB_DC115DC116:DG201DG202_CC
15
1.323
-2.720
27.941
-0.637
1.688
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Data collection
Database references
Derived calculations
1
0
1999-06-30
1
1
2008-04-26
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
NDB
1999-04-23
REL
CPT
Cisplatin
HOH
water
CPT
99
4
CPT
CPT
99
B
HOH
301
5
HOH
HOH
301
B
HOH
305
5
HOH
HOH
305
B
HOH
306
5
HOH
HOH
306
B
HOH
309
5
HOH
HOH
309
B
HOH
310
5
HOH
HOH
310
B
HOH
312
5
HOH
HOH
312
B
HOH
317
5
HOH
HOH
317
B
HOH
319
5
HOH
HOH
319
B
HOH
324
5
HOH
HOH
324
B
HOH
325
5
HOH
HOH
325
B
HOH
328
5
HOH
HOH
328
B
HOH
330
5
HOH
HOH
330
B
HOH
334
5
HOH
HOH
334
B
HOH
343
5
HOH
HOH
343
B
HOH
345
5
HOH
HOH
345
B
HOH
351
5
HOH
HOH
351
B
HOH
355
5
HOH
HOH
355
B
HOH
356
5
HOH
HOH
356
B
HOH
358
5
HOH
HOH
358
B
HOH
359
5
HOH
HOH
359
B
HOH
363
5
HOH
HOH
363
B
HOH
365
5
HOH
HOH
365
B
HOH
371
5
HOH
HOH
371
B
HOH
374
5
HOH
HOH
374
B
HOH
304
5
HOH
HOH
304
C
HOH
308
5
HOH
HOH
308
C
HOH
311
5
HOH
HOH
311
C
HOH
313
5
HOH
HOH
313
C
HOH
315
5
HOH
HOH
315
C
HOH
316
5
HOH
HOH
316
C
HOH
323
5
HOH
HOH
323
C
HOH
326
5
HOH
HOH
326
C
HOH
331
5
HOH
HOH
331
C
HOH
335
5
HOH
HOH
335
C
HOH
336
5
HOH
HOH
336
C
HOH
338
5
HOH
HOH
338
C
HOH
339
5
HOH
HOH
339
C
HOH
344
5
HOH
HOH
344
C
HOH
346
5
HOH
HOH
346
C
HOH
347
5
HOH
HOH
347
C
HOH
348
5
HOH
HOH
348
C
HOH
349
5
HOH
HOH
349
C
HOH
352
5
HOH
HOH
352
C
HOH
353
5
HOH
HOH
353
C
HOH
357
5
HOH
HOH
357
C
HOH
364
5
HOH
HOH
364
C
HOH
366
5
HOH
HOH
366
C
HOH
367
5
HOH
HOH
367
C
HOH
369
5
HOH
HOH
369
C
HOH
370
5
HOH
HOH
370
C
HOH
372
5
HOH
HOH
372
C
HOH
302
5
HOH
HOH
302
A
HOH
303
5
HOH
HOH
303
A
HOH
307
5
HOH
HOH
307
A
HOH
314
5
HOH
HOH
314
A
HOH
318
5
HOH
HOH
318
A
HOH
320
5
HOH
HOH
320
A
HOH
321
5
HOH
HOH
321
A
HOH
322
5
HOH
HOH
322
A
HOH
327
5
HOH
HOH
327
A
HOH
329
5
HOH
HOH
329
A
HOH
332
5
HOH
HOH
332
A
HOH
333
5
HOH
HOH
333
A
HOH
337
5
HOH
HOH
337
A
HOH
340
5
HOH
HOH
340
A
HOH
341
5
HOH
HOH
341
A
HOH
342
5
HOH
HOH
342
A
HOH
350
5
HOH
HOH
350
A
HOH
354
5
HOH
HOH
354
A
HOH
360
5
HOH
HOH
360
A
HOH
361
5
HOH
HOH
361
A
HOH
362
5
HOH
HOH
362
A
HOH
368
5
HOH
HOH
368
A
HOH
373
5
HOH
HOH
373
A
C
101
n
1
DC
101
B
C
102
n
2
DC
102
B
+U
103
n
3
5IU
103
B
C
104
n
4
DC
104
B
T
105
n
5
DT
105
B
C
106
n
6
DC
106
B
T
107
n
7
DT
107
B
G
108
n
8
DG
108
B
G
109
n
9
DG
109
B
A
110
n
10
DA
110
B
C
111
n
11
DC
111
B
C
112
n
12
DC
112
B
T
113
n
13
DT
113
B
T
114
n
14
DT
114
B
C
115
n
15
DC
115
B
C
116
n
16
DC
116
B
G
201
n
1
DG
201
C
G
202
n
2
DG
202
C
A
203
n
3
DA
203
C
A
204
n
4
DA
204
C
G
205
n
5
DG
205
C
G
206
n
6
DG
206
C
T
207
n
7
DT
207
C
C
208
n
8
DC
208
C
C
209
n
9
DC
209
C
A
210
n
10
DA
210
C
G
211
n
11
DG
211
C
A
212
n
12
DA
212
C
G
213
n
13
DG
213
C
A
214
n
14
DA
214
C
G
215
n
15
DG
215
C
G
216
n
16
DG
216
C
LYS
7
n
1
LYS
7
A
PRO
8
n
2
PRO
8
A
ARG
9
n
3
ARG
9
A
GLY
10
n
4
GLY
10
A
LYS
11
n
5
LYS
11
A
MET
12
n
6
MET
12
A
SER
13
n
7
SER
13
A
SER
14
n
8
SER
14
A
TYR
15
n
9
TYR
15
A
ALA
16
n
10
ALA
16
A
PHE
17
n
11
PHE
17
A
PHE
18
n
12
PHE
18
A
VAL
19
n
13
VAL
19
A
GLN
20
n
14
GLN
20
A
THR
21
n
15
THR
21
A
CYS
22
n
16
CYS
22
A
ARG
23
n
17
ARG
23
A
GLU
24
n
18
GLU
24
A
GLU
25
n
19
GLU
25
A
HIS
26
n
20
HIS
26
A
LYS
27
n
21
LYS
27
A
LYS
28
n
22
LYS
28
A
LYS
29
n
23
LYS
29
A
HIS
30
n
24
HIS
30
A
PRO
31
n
25
PRO
31
A
ASP
32
n
26
ASP
32
A
ALA
33
n
27
ALA
33
A
SER
34
n
28
SER
34
A
VAL
35
n
29
VAL
35
A
ASN
36
n
30
ASN
36
A
PHE
37
n
31
PHE
37
A
SER
38
n
32
SER
38
A
GLU
39
n
33
GLU
39
A
PHE
40
n
34
PHE
40
A
SER
41
n
35
SER
41
A
LYS
42
n
36
LYS
42
A
LYS
43
n
37
LYS
43
A
CYS
44
n
38
CYS
44
A
SER
45
n
39
SER
45
A
GLU
46
n
40
GLU
46
A
ARG
47
n
41
ARG
47
A
TRP
48
n
42
TRP
48
A
LYS
49
n
43
LYS
49
A
THR
50
n
44
THR
50
A
MET
51
n
45
MET
51
A
SER
52
n
46
SER
52
A
ALA
53
n
47
ALA
53
A
LYS
54
n
48
LYS
54
A
GLU
55
n
49
GLU
55
A
LYS
56
n
50
LYS
56
A
GLY
57
n
51
GLY
57
A
LYS
58
n
52
LYS
58
A
PHE
59
n
53
PHE
59
A
GLU
60
n
54
GLU
60
A
ASP
61
n
55
ASP
61
A
MET
62
n
56
MET
62
A
ALA
63
n
57
ALA
63
A
LYS
64
n
58
LYS
64
A
ALA
65
n
59
ALA
65
A
ASP
66
n
60
ASP
66
A
LYS
67
n
61
LYS
67
A
ALA
68
n
62
ALA
68
A
ARG
69
n
63
ARG
69
A
TYR
70
n
64
TYR
70
A
GLU
71
n
65
GLU
71
A
ARG
72
n
66
ARG
72
A
GLU
73
n
67
GLU
73
A
MET
74
n
68
MET
74
A
LYS
75
n
69
LYS
75
A
THR
76
n
70
THR
76
A
TYR
77
n
71
TYR
77
A
author_defined_assembly
3
trimeric
B
DG
108
A
N7
DG
8
1_555
B
CPT
99
D
PT1
CPT
1_555
B
CPT
99
D
N1
CPT
1_555
177.3
B
DG
108
A
N7
DG
8
1_555
B
CPT
99
D
PT1
CPT
1_555
B
CPT
99
D
N2
CPT
1_555
88.7
B
CPT
99
D
N1
CPT
1_555
B
CPT
99
D
PT1
CPT
1_555
B
CPT
99
D
N2
CPT
1_555
89.1
B
DG
108
A
N7
DG
8
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
108
A
C8
DG
8
1_555
28.1
B
CPT
99
D
N1
CPT
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
108
A
C8
DG
8
1_555
153.7
B
CPT
99
D
N2
CPT
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
108
A
C8
DG
8
1_555
91.4
B
DG
108
A
N7
DG
8
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
108
A
C5
DG
8
1_555
14.5
B
CPT
99
D
N1
CPT
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
108
A
C5
DG
8
1_555
164.6
B
CPT
99
D
N2
CPT
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
108
A
C5
DG
8
1_555
94.3
B
DG
108
A
C8
DG
8
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
108
A
C5
DG
8
1_555
41.4
B
DG
108
A
N7
DG
8
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
N7
DG
9
1_555
90.3
B
CPT
99
D
N1
CPT
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
N7
DG
9
1_555
92.0
B
CPT
99
D
N2
CPT
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
N7
DG
9
1_555
176.1
B
DG
108
A
C8
DG
8
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
N7
DG
9
1_555
86.0
B
DG
108
A
C5
DG
8
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
N7
DG
9
1_555
85.6
B
DG
108
A
N7
DG
8
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C8
DG
9
1_555
90.0
B
CPT
99
D
N1
CPT
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C8
DG
9
1_555
92.7
B
CPT
99
D
N2
CPT
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C8
DG
9
1_555
150.7
B
DG
108
A
C8
DG
8
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C8
DG
9
1_555
74.5
B
DG
108
A
C5
DG
8
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C8
DG
9
1_555
91.7
B
DG
109
A
N7
DG
9
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C8
DG
9
1_555
25.5
B
DG
108
A
N7
DG
8
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C5
DG
9
1_555
91.5
B
CPT
99
D
N1
CPT
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C5
DG
9
1_555
90.3
B
CPT
99
D
N2
CPT
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C5
DG
9
1_555
166.8
B
DG
108
A
C8
DG
8
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C5
DG
9
1_555
95.0
B
DG
108
A
C5
DG
8
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C5
DG
9
1_555
83.1
B
DG
109
A
N7
DG
9
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C5
DG
9
1_555
17.0
B
DG
109
A
C8
DG
9
1_555
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C5
DG
9
1_555
42.5
B
5IU
103
5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
A
5IU
3
DU
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CG
LYS
7
C
CG
LYS
1
1
Y
1
A
CD
LYS
7
C
CD
LYS
1
1
Y
1
A
CE
LYS
7
C
CE
LYS
1
1
Y
1
A
NZ
LYS
7
C
NZ
LYS
1
1
Y
1
A
CG
ARG
9
C
CG
ARG
3
1
Y
1
A
CD
ARG
9
C
CD
ARG
3
1
Y
1
A
NE
ARG
9
C
NE
ARG
3
1
Y
1
A
CZ
ARG
9
C
CZ
ARG
3
1
Y
1
A
NH1
ARG
9
C
NH1
ARG
3
1
Y
1
A
NH2
ARG
9
C
NH2
ARG
3
1
Y
1
A
CG
LYS
28
C
CG
LYS
22
1
Y
1
A
CD
LYS
28
C
CD
LYS
22
1
Y
1
A
CE
LYS
28
C
CE
LYS
22
1
Y
1
A
NZ
LYS
28
C
NZ
LYS
22
1
Y
1
A
CD
LYS
29
C
CD
LYS
23
1
Y
1
A
CE
LYS
29
C
CE
LYS
23
1
Y
1
A
NZ
LYS
29
C
NZ
LYS
23
1
Y
1
A
CG
HIS
30
C
CG
HIS
24
1
Y
1
A
ND1
HIS
30
C
ND1
HIS
24
1
Y
1
A
CD2
HIS
30
C
CD2
HIS
24
1
Y
1
A
CE1
HIS
30
C
CE1
HIS
24
1
Y
1
A
NE2
HIS
30
C
NE2
HIS
24
1
Y
1
A
CG
ASP
32
C
CG
ASP
26
1
Y
1
A
OD1
ASP
32
C
OD1
ASP
26
1
Y
1
A
OD2
ASP
32
C
OD2
ASP
26
1
Y
1
A
OG
SER
34
C
OG
SER
28
1
Y
1
A
CG
LYS
64
C
CG
LYS
58
1
Y
1
A
CD
LYS
64
C
CD
LYS
58
1
Y
1
A
CE
LYS
64
C
CE
LYS
58
1
Y
1
A
NZ
LYS
64
C
NZ
LYS
58
1
Y
1
B
DC
101
0.064
SIDE CHAIN
1
C
DG
215
0.089
SIDE CHAIN
1
A
PRO
31
-69.69
10.26
1
A
ALA
33
-20.80
116.83
1
A
VAL
35
67.37
101.27
1
A
ALA
53
-39.60
-24.57
TYR: TYR 77 C-TERMINAL OXYGEN OXT WAS NOT FOUND IN ELECTRON
DENSITY MAP; C-TERMINAL RESIDUES 78-89 WERE NOT SEEN IN DENSITY MAP
0.239
0.238
0.238
2.5
100
1710
17638
10.0
65.6
RANDOM
1
THROUGHOUT
0.0
MIRAS
2.5
100
74
1289
3
650
562
0.013
1.8
32.2
1.6
2.5
100
1CKT
9655
0.044
1
3.7
97.1
model building
X-PLOR
refinement
X-PLOR
3.851
data scaling
SCALEPACK
phasing
X-PLOR
CRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN-MODIFIED DNA DUPLEX
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
SER
14
C
SER
8
HELX_P
A
LYS
29
C
LYS
23
1
1
16
A
PHE
37
C
PHE
31
HELX_P
A
LYS
49
C
LYS
43
1
2
13
A
GLY
57
C
GLY
51
HELX_P
A
MET
74
C
MET
68
1
3
18
covale
1.592
both
B
DC
102
A
O3'
DC
2
1_555
B
5IU
103
A
P
5IU
3
1_555
covale
1.600
both
B
5IU
103
A
O3'
5IU
3
1_555
B
DC
104
A
P
DC
4
1_555
metalc
1.940
B
CPT
99
D
PT1
CPT
1_555
B
DG
108
A
N7
DG
8
1_555
metalc
2.638
B
CPT
99
D
PT1
CPT
1_555
B
DG
108
A
C8
DG
8
1_555
metalc
3.182
B
CPT
99
D
PT1
CPT
1_555
B
DG
108
A
C5
DG
8
1_555
metalc
1.890
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
N7
DG
9
1_555
metalc
2.733
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C8
DG
9
1_555
metalc
3.085
B
CPT
99
D
PT1
CPT
1_555
B
DG
109
A
C5
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
101
A
N3
DC
1
1_555
C
DG
216
B
N1
DG
16
1_555
hydrog
WATSON-CRICK
B
DC
101
A
N4
DC
1
1_555
C
DG
216
B
O6
DG
16
1_555
hydrog
WATSON-CRICK
B
DC
101
A
O2
DC
1
1_555
C
DG
216
B
N2
DG
16
1_555
hydrog
WATSON-CRICK
B
DC
102
A
N3
DC
2
1_555
C
DG
215
B
N1
DG
15
1_555
hydrog
WATSON-CRICK
B
DC
102
A
N4
DC
2
1_555
C
DG
215
B
O6
DG
15
1_555
hydrog
WATSON-CRICK
B
DC
102
A
O2
DC
2
1_555
C
DG
215
B
N2
DG
15
1_555
hydrog
WATSON-CRICK
B
5IU
103
A
N3
5IU
3
1_555
C
DA
214
B
N1
DA
14
1_555
hydrog
WATSON-CRICK
B
5IU
103
A
O4
5IU
3
1_555
C
DA
214
B
N6
DA
14
1_555
hydrog
WATSON-CRICK
B
DC
104
A
N3
DC
4
1_555
C
DG
213
B
N1
DG
13
1_555
hydrog
WATSON-CRICK
B
DC
104
A
N4
DC
4
1_555
C
DG
213
B
O6
DG
13
1_555
hydrog
WATSON-CRICK
B
DC
104
A
O2
DC
4
1_555
C
DG
213
B
N2
DG
13
1_555
hydrog
WATSON-CRICK
B
DT
105
A
N3
DT
5
1_555
C
DA
212
B
N1
DA
12
1_555
hydrog
WATSON-CRICK
B
DT
105
A
O4
DT
5
1_555
C
DA
212
B
N6
DA
12
1_555
hydrog
WATSON-CRICK
B
DC
106
A
N3
DC
6
1_555
C
DG
211
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
B
DC
106
A
N4
DC
6
1_555
C
DG
211
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
B
DC
106
A
O2
DC
6
1_555
C
DG
211
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
B
DT
107
A
N3
DT
7
1_555
C
DA
210
B
N1
DA
10
1_555
hydrog
WATSON-CRICK
B
DT
107
A
O4
DT
7
1_555
C
DA
210
B
N6
DA
10
1_555
hydrog
WATSON-CRICK
B
DG
108
A
N1
DG
8
1_555
C
DC
209
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
108
A
N2
DG
8
1_555
C
DC
209
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
108
A
O6
DG
8
1_555
C
DC
209
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
109
A
N1
DG
9
1_555
C
DC
208
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
109
A
N2
DG
9
1_555
C
DC
208
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
109
A
O6
DG
9
1_555
C
DC
208
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
B
DA
110
A
N1
DA
10
1_555
C
DT
207
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
B
DA
110
A
N6
DA
10
1_555
C
DT
207
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
B
DC
111
A
N3
DC
11
1_555
C
DG
206
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
B
DC
111
A
N4
DC
11
1_555
C
DG
206
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
B
DC
111
A
O2
DC
11
1_555
C
DG
206
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
B
DC
112
A
N3
DC
12
1_555
C
DG
205
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
112
A
N4
DC
12
1_555
C
DG
205
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
112
A
O2
DC
12
1_555
C
DG
205
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
B
DT
113
A
N3
DT
13
1_555
C
DA
204
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
B
DT
113
A
O4
DT
13
1_555
C
DA
204
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
B
DT
114
A
N3
DT
14
1_555
C
DA
203
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
B
DT
114
A
O4
DT
14
1_555
C
DA
203
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
B
DC
115
A
N3
DC
15
1_555
C
DG
202
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
115
A
N4
DC
15
1_555
C
DG
202
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
115
A
O2
DC
15
1_555
C
DG
202
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
116
A
N3
DC
16
1_555
C
DG
201
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
116
A
N4
DC
16
1_555
C
DG
201
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
116
A
O2
DC
16
1_555
C
DG
201
B
N2
DG
1
1_555
GENE REGULATION/DNA
HIGH-MOBILITY GROUP DOMAIN, BENT DNA, PROTEIN-DRUG-DNA COMPLEX, GENE REGULATION-DNA COMPLEX
HMG1_RAT
UNP
3
7
P63159
1CKT
PDB
1
1CKT
1CKT
PDB
2
1CKT
7
77
1CKT
7
77
P63159
A
1
1
71
101
116
1CKT
101
116
1CKT
B
2
1
16
201
216
1CKT
201
216
1CKT
C
3
1
16
BINDING SITE FOR RESIDUE CPT B 99
B
CPT
99
Software
2
B
DG
108
A
DG
8
2
1_555
B
DG
109
A
DG
9
2
1_555
5
monoclinic
C 1 2 1