0.008486 0.004900 0.000000 0.000000 0.009799 0.000000 0.000000 0.000000 0.020413 0.00000 0.00000 0.00000 Horvath, M. Rosenberg, J.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 117.833 117.833 48.989 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C10 H13 N4 O6 P 316.207 n PURINE 2'-DEOXYRIBO-5'-MONOPHOSPHATE DNA linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H Y 416 N N Y 417 N C Y 418 N N Y 419 N C Y 420 N C Y 421 N C Y 422 N N Y 423 N C Y 424 N N N 425 R C N 426 N C N 427 S C N 428 N O N 429 R C N 430 N O N 431 N C N 432 N O N 433 N P N 434 N O N 435 N O N 436 N O N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N N N 451 S C N 452 N C N 453 N O N 454 N C N 455 N C N 456 N C N 457 N O N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N N N 468 S C N 469 N C N 470 N O N 471 N C N 472 N O N 473 N O N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N N N 482 S C N 483 N C N 484 N O N 485 R C N 486 N O N 487 N C N 488 N O N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N N N 499 S C N 500 N C N 501 N O N 502 N C Y 503 N C Y 504 N C Y 505 N C Y 506 N N Y 507 N C Y 508 N C Y 509 N C Y 510 N C Y 511 N C N 512 N O N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N N N 526 S C N 527 N C N 528 N O N 529 N C Y 530 N C Y 531 N C Y 532 N C Y 533 N C Y 534 N C Y 535 N C N 536 N O N 537 N O N 538 N H N 539 N H N 540 N H N 541 N H N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N N N 550 S C N 551 N C N 552 N O N 553 N C N 554 N C N 555 N C N 556 N O N 557 N H N 558 N H N 559 N H N 560 N H N 561 N H N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing Y 409 N sing Y 410 N doub Y 411 N doub N 412 N sing Y 413 N sing Y 414 N doub Y 415 N sing Y 416 N sing Y 417 N sing N 418 N sing Y 419 N doub Y 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N doub N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N doub N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N doub N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N doub N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N doub N 498 N sing N 499 N sing N 500 N sing N 501 N sing Y 502 N doub Y 503 N sing Y 504 N sing N 505 N sing Y 506 N doub Y 507 N sing Y 508 N sing N 509 N sing Y 510 N sing Y 511 N doub N 512 N sing Y 513 N doub N 514 N sing Y 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N doub N 526 N sing N 527 N sing N 528 N sing N 529 N sing Y 530 N doub Y 531 N sing Y 532 N sing N 533 N sing Y 534 N doub N 535 N sing Y 536 N doub N 537 N sing Y 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N doub N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing To be Published 0353 Iap (Inner-Adenine to Purine): A Cognate EcoRI-DNA Base Analog Complex 10.2210/pdb1cl8/pdb pdb_00001cl8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 MIRRORS IMAGE PLATE 1998-04-15 SINGLE WAVELENGTH M x-ray 1 1.1 1.0 F1 CHESS 1.1 SYNCHROTRON CHESS BEAMLINE F1 3952.570 DNA (5'-D(*TP*CP*GP*CP*GP*AP*(PRN)P*TP*TP*CP*GP*CP*G)-3') 1 syn polymer 30970.184 PROTEIN (ENDONUCLEASE) 1 nat polymer 18.015 water 155 nat water no yes (DT)(DC)(DG)(DC)(DG)(DA)(PRN)(DT)(DT)(DC)(DG)(DC)(DG) TCGCGAATTCGCG B polydeoxyribonucleotide no no SNKKQSNRLTEQHKLSQGVIGIFGDYAKAHDLAVGEVSKLVKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDLGGTL FVSNSSIKPDGGIVEVKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGDQDLMAAGNAIERSHKNISEIANFMLSES HFPYVLFLEGSNFLTENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVNHKDKSIMLQAASIYTQG DGREWDSKIMFEIMFDISTTSLRVLGRDLFEQLTSK SNKKQSNRLTEQHKLSQGVIGIFGDYAKAHDLAVGEVSKLVKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDLGGTL FVSNSSIKPDGGIVEVKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGDQDLMAAGNAIERSHKNISEIANFMLSES HFPYVLFLEGSNFLTENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVNHKDKSIMLQAASIYTQG DGREWDSKIMFEIMFDISTTSLRVLGRDLFEQLTSK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia sample 562 Escherichia coli 1 2.80 58 VAPOR DIFFUSION, HANGING DROP 7.5 pH 7.5, VAPOR DIFFUSION, HANGING DROP -26.879 1 19 B 2 B 13 3.080 B_DC2:DG13_B 1 0.983 0.050 0.439 0.029 -4.079 1 19 B 3 B 12 0.110 B_DG3:DC12_B 2 -1.376 -0.170 0.159 -0.097 -0.201 1 19 B 4 B 11 -5.502 B_DC4:DG11_B 3 -3.250 0.193 -0.197 0.039 -15.627 1 19 B 5 B 10 -1.865 B_DG5:DC10_B 4 -2.966 -0.323 -0.665 -0.137 1.062 1 20 B 6 B 9 -3.180 B_DA6:DT9_B 5 -4.243 0.256 -0.040 -0.013 4.064 B 7 B 8 3.057 B_PRN7:DT8_B 6 0.351 0.226 0.521 0.128 -4.063 B 8 B 7 3.057 B_DT8:PRN7_B 7 0.351 -0.226 0.521 0.128 -1.062 1 20 B 9 B 6 -3.180 B_DT9:DA6_B 8 -4.243 -0.256 -0.040 -0.013 15.627 1 19 B 10 B 5 -1.865 B_DC10:DG5_B 9 -2.966 0.323 -0.665 -0.137 0.201 1 19 B 11 B 4 -5.502 B_DG11:DC4_B 10 -3.250 -0.193 -0.197 0.039 4.079 1 19 B 12 B 3 0.110 B_DC12:DG3_B 11 -1.376 0.170 0.159 -0.097 26.879 1 19 B 13 B 2 3.080 B_DG13:DC2_B 12 0.983 -0.050 0.439 0.029 2.774 28.194 B B 2 3 18.867 B B 13 12 2.871 9.034 0.101 0.151 BB_DC2DG3:DC12DG13_BB 1 0.566 -1.183 26.729 -1.561 -0.091 3.328 36.474 B B 3 4 1.243 B B 12 11 3.397 0.777 -0.582 -0.386 BB_DG3DC4:DG11DC12_BB 2 3.149 -5.038 36.335 -0.727 1.379 3.972 35.802 B B 4 5 1.026 B B 11 10 3.905 0.629 0.830 -0.187 BB_DC4DG5:DC10DG11_BB 3 4.416 -7.201 35.532 -0.414 -0.582 3.164 32.386 B B 5 6 -2.300 B B 10 9 3.077 -1.280 -0.979 -0.084 BB_DG5DA6:DT9DC10_BB 4 -3.508 6.303 32.175 0.065 1.164 2.333 38.853 B B 6 7 56.407 B B 9 8 3.764 32.018 0.947 0.417 BB_DA6PRN7:DT8DT9_BB 5 -5.400 9.513 21.630 -4.144 -2.228 2.739 68.800 B B 7 8 -55.269 B B 8 7 5.045 -55.332 0.000 0.662 BB_PRN7DT8:PRN7DT8_BB 6 0.000 0.000 42.621 3.795 0.000 2.333 38.853 B B 8 9 56.407 B B 7 6 3.764 32.018 -0.947 0.417 BB_DT8DT9:DA6PRN7_BB 7 5.400 -9.513 21.630 -4.144 2.228 3.164 32.386 B B 9 10 -2.300 B B 6 5 3.077 -1.280 0.979 -0.084 BB_DT9DC10:DG5DA6_BB 8 3.508 -6.303 32.175 0.065 -1.164 3.972 35.802 B B 10 11 1.026 B B 5 4 3.905 0.629 -0.830 -0.187 BB_DC10DG11:DC4DG5_BB 9 -4.416 7.201 35.532 -0.414 0.582 3.328 36.474 B B 11 12 1.243 B B 4 3 3.397 0.777 0.582 -0.386 BB_DG11DC12:DG3DC4_BB 10 -3.149 5.038 36.335 -0.727 -1.379 2.774 28.194 B B 12 13 18.867 B B 3 2 2.871 9.034 -0.101 0.151 BB_DC12DG13:DC2DG3_BB 11 -0.566 1.183 26.729 -1.561 0.091 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 1999-05-19 1 1 2007-10-16 1 2 2011-07-13 1 3 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag BNL Y RCSB 1999-05-06 REL HOH water PRN IS ADENINE WITH THE N6 AMINO GROUP REMOVED 1CKQ PDB ENTRY 1CKQ PDB experimental model HOH 5 3 HOH HOH 14 B HOH 14 3 HOH HOH 15 B HOH 17 3 HOH HOH 16 B HOH 30 3 HOH HOH 17 B HOH 31 3 HOH HOH 18 B HOH 37 3 HOH HOH 19 B HOH 40 3 HOH HOH 20 B HOH 41 3 HOH HOH 21 B HOH 45 3 HOH HOH 22 B HOH 55 3 HOH HOH 23 B HOH 59 3 HOH HOH 24 B HOH 65 3 HOH HOH 25 B HOH 66 3 HOH HOH 26 B HOH 67 3 HOH HOH 27 B HOH 97 3 HOH HOH 28 B HOH 102 3 HOH HOH 29 B HOH 108 3 HOH HOH 30 B HOH 112 3 HOH HOH 31 B HOH 126 3 HOH HOH 32 B HOH 148 3 HOH HOH 33 B HOH 149 3 HOH HOH 34 B HOH 153 3 HOH HOH 35 B HOH 154 3 HOH HOH 36 B HOH 1 3 HOH HOH 278 A HOH 2 3 HOH HOH 279 A HOH 3 3 HOH HOH 280 A HOH 4 3 HOH HOH 281 A HOH 6 3 HOH HOH 282 A HOH 7 3 HOH HOH 283 A HOH 8 3 HOH HOH 284 A HOH 9 3 HOH HOH 285 A HOH 10 3 HOH HOH 286 A HOH 11 3 HOH HOH 287 A HOH 12 3 HOH HOH 288 A HOH 13 3 HOH HOH 289 A HOH 15 3 HOH HOH 290 A HOH 16 3 HOH HOH 291 A HOH 18 3 HOH HOH 292 A HOH 19 3 HOH HOH 293 A HOH 20 3 HOH HOH 294 A HOH 21 3 HOH HOH 295 A HOH 22 3 HOH HOH 296 A HOH 23 3 HOH HOH 297 A HOH 24 3 HOH HOH 298 A HOH 25 3 HOH HOH 299 A HOH 26 3 HOH HOH 300 A HOH 27 3 HOH HOH 301 A HOH 28 3 HOH HOH 302 A HOH 29 3 HOH HOH 303 A HOH 32 3 HOH HOH 304 A HOH 33 3 HOH HOH 305 A HOH 34 3 HOH HOH 306 A HOH 35 3 HOH HOH 307 A HOH 36 3 HOH HOH 308 A HOH 38 3 HOH HOH 309 A HOH 39 3 HOH HOH 310 A HOH 42 3 HOH HOH 311 A HOH 43 3 HOH HOH 312 A HOH 44 3 HOH HOH 313 A HOH 46 3 HOH HOH 314 A HOH 47 3 HOH HOH 315 A HOH 48 3 HOH HOH 316 A HOH 49 3 HOH HOH 317 A HOH 50 3 HOH HOH 318 A HOH 51 3 HOH HOH 319 A HOH 52 3 HOH HOH 320 A HOH 53 3 HOH HOH 321 A HOH 54 3 HOH HOH 322 A HOH 56 3 HOH HOH 323 A HOH 57 3 HOH HOH 324 A HOH 58 3 HOH HOH 325 A HOH 60 3 HOH HOH 326 A HOH 61 3 HOH HOH 327 A HOH 62 3 HOH HOH 328 A HOH 63 3 HOH HOH 329 A HOH 64 3 HOH HOH 330 A HOH 68 3 HOH HOH 331 A HOH 69 3 HOH HOH 332 A HOH 70 3 HOH HOH 333 A HOH 71 3 HOH HOH 334 A HOH 72 3 HOH HOH 335 A HOH 73 3 HOH HOH 336 A HOH 74 3 HOH HOH 337 A HOH 75 3 HOH HOH 338 A HOH 76 3 HOH HOH 339 A HOH 77 3 HOH HOH 340 A HOH 78 3 HOH HOH 341 A HOH 79 3 HOH HOH 342 A HOH 80 3 HOH HOH 343 A HOH 81 3 HOH HOH 344 A HOH 82 3 HOH HOH 345 A HOH 83 3 HOH HOH 346 A HOH 84 3 HOH HOH 347 A HOH 85 3 HOH HOH 348 A HOH 86 3 HOH HOH 349 A HOH 87 3 HOH HOH 350 A HOH 88 3 HOH HOH 351 A HOH 89 3 HOH HOH 352 A HOH 90 3 HOH HOH 353 A HOH 91 3 HOH HOH 354 A HOH 92 3 HOH HOH 355 A HOH 93 3 HOH HOH 356 A HOH 94 3 HOH HOH 357 A HOH 95 3 HOH HOH 358 A HOH 96 3 HOH HOH 359 A HOH 98 3 HOH HOH 360 A HOH 99 3 HOH HOH 361 A HOH 100 3 HOH HOH 362 A HOH 101 3 HOH HOH 363 A HOH 103 3 HOH HOH 364 A HOH 104 3 HOH HOH 365 A HOH 105 3 HOH HOH 366 A HOH 106 3 HOH HOH 367 A HOH 107 3 HOH HOH 368 A HOH 109 3 HOH HOH 369 A HOH 110 3 HOH HOH 370 A HOH 111 3 HOH HOH 371 A HOH 113 3 HOH HOH 372 A HOH 114 3 HOH HOH 373 A HOH 115 3 HOH HOH 374 A HOH 116 3 HOH HOH 375 A HOH 117 3 HOH HOH 376 A HOH 118 3 HOH HOH 377 A HOH 119 3 HOH HOH 378 A HOH 120 3 HOH HOH 379 A HOH 121 3 HOH HOH 380 A HOH 122 3 HOH HOH 381 A HOH 123 3 HOH HOH 382 A HOH 124 3 HOH HOH 383 A HOH 125 3 HOH HOH 384 A HOH 127 3 HOH HOH 385 A HOH 128 3 HOH HOH 386 A HOH 129 3 HOH HOH 387 A HOH 130 3 HOH HOH 388 A HOH 131 3 HOH HOH 389 A HOH 132 3 HOH HOH 390 A HOH 133 3 HOH HOH 391 A HOH 134 3 HOH HOH 392 A HOH 135 3 HOH HOH 393 A HOH 136 3 HOH HOH 394 A HOH 137 3 HOH HOH 395 A HOH 138 3 HOH HOH 396 A HOH 139 3 HOH HOH 397 A HOH 140 3 HOH HOH 398 A HOH 141 3 HOH HOH 399 A HOH 142 3 HOH HOH 400 A HOH 143 3 HOH HOH 401 A HOH 144 3 HOH HOH 402 A HOH 145 3 HOH HOH 403 A HOH 146 3 HOH HOH 404 A HOH 147 3 HOH HOH 405 A HOH 150 3 HOH HOH 406 A HOH 151 3 HOH HOH 407 A HOH 152 3 HOH HOH 408 A HOH 155 3 HOH HOH 409 A T 1 n 1 DT 1 B C 2 n 2 DC 2 B G 3 n 3 DG 3 B C 4 n 4 DC 4 B G 5 n 5 DG 5 B A 6 n 6 DA 6 B PRN 7 n 7 PRN 7 B T 8 n 8 DT 8 B T 9 n 9 DT 9 B C 10 n 10 DC 10 B G 11 n 11 DG 11 B C 12 n 12 DC 12 B G 13 n 13 DG 13 B n 1 2 A n 2 3 A n 3 4 A n 4 5 A n 5 6 A n 6 7 A n 7 8 A n 8 9 A n 9 10 A n 10 11 A n 11 12 A n 12 13 A n 13 14 A n 14 15 A n 15 16 A SER 17 n 16 SER 17 A GLN 18 n 17 GLN 18 A GLY 19 n 18 GLY 19 A VAL 20 n 19 VAL 20 A ILE 21 n 20 ILE 21 A GLY 22 n 21 GLY 22 A ILE 23 n 22 ILE 23 A PHE 24 n 23 PHE 24 A GLY 25 n 24 GLY 25 A ASP 26 n 25 ASP 26 A TYR 27 n 26 TYR 27 A ALA 28 n 27 ALA 28 A LYS 29 n 28 LYS 29 A ALA 30 n 29 ALA 30 A HIS 31 n 30 HIS 31 A ASP 32 n 31 ASP 32 A LEU 33 n 32 LEU 33 A ALA 34 n 33 ALA 34 A VAL 35 n 34 VAL 35 A GLY 36 n 35 GLY 36 A GLU 37 n 36 GLU 37 A VAL 38 n 37 VAL 38 A SER 39 n 38 SER 39 A LYS 40 n 39 LYS 40 A LEU 41 n 40 LEU 41 A VAL 42 n 41 VAL 42 A LYS 43 n 42 LYS 43 A LYS 44 n 43 LYS 44 A ALA 45 n 44 ALA 45 A LEU 46 n 45 LEU 46 A SER 47 n 46 SER 47 A ASN 48 n 47 ASN 48 A GLU 49 n 48 GLU 49 A TYR 50 n 49 TYR 50 A PRO 51 n 50 PRO 51 A GLN 52 n 51 GLN 52 A LEU 53 n 52 LEU 53 A SER 54 n 53 SER 54 A PHE 55 n 54 PHE 55 A ARG 56 n 55 ARG 56 A TYR 57 n 56 TYR 57 A ARG 58 n 57 ARG 58 A ASP 59 n 58 ASP 59 A SER 60 n 59 SER 60 A ILE 61 n 60 ILE 61 A LYS 62 n 61 LYS 62 A LYS 63 n 62 LYS 63 A THR 64 n 63 THR 64 A GLU 65 n 64 GLU 65 A ILE 66 n 65 ILE 66 A ASN 67 n 66 ASN 67 A GLU 68 n 67 GLU 68 A ALA 69 n 68 ALA 69 A LEU 70 n 69 LEU 70 A LYS 71 n 70 LYS 71 A LYS 72 n 71 LYS 72 A ILE 73 n 72 ILE 73 A ASP 74 n 73 ASP 74 A PRO 75 n 74 PRO 75 A ASP 76 n 75 ASP 76 A LEU 77 n 76 LEU 77 A GLY 78 n 77 GLY 78 A GLY 79 n 78 GLY 79 A THR 80 n 79 THR 80 A LEU 81 n 80 LEU 81 A PHE 82 n 81 PHE 82 A VAL 83 n 82 VAL 83 A SER 84 n 83 SER 84 A ASN 85 n 84 ASN 85 A SER 86 n 85 SER 86 A SER 87 n 86 SER 87 A ILE 88 n 87 ILE 88 A LYS 89 n 88 LYS 89 A PRO 90 n 89 PRO 90 A ASP 91 n 90 ASP 91 A GLY 92 n 91 GLY 92 A GLY 93 n 92 GLY 93 A ILE 94 n 93 ILE 94 A VAL 95 n 94 VAL 95 A GLU 96 n 95 GLU 96 A VAL 97 n 96 VAL 97 A LYS 98 n 97 LYS 98 A ASP 99 n 98 ASP 99 A ASP 100 n 99 ASP 100 A TYR 101 n 100 TYR 101 A GLY 102 n 101 GLY 102 A GLU 103 n 102 GLU 103 A TRP 104 n 103 TRP 104 A ARG 105 n 104 ARG 105 A VAL 106 n 105 VAL 106 A VAL 107 n 106 VAL 107 A LEU 108 n 107 LEU 108 A VAL 109 n 108 VAL 109 A ALA 110 n 109 ALA 110 A GLU 111 n 110 GLU 111 A ALA 112 n 111 ALA 112 A LYS 113 n 112 LYS 113 A HIS 114 n 113 HIS 114 A GLN 115 n 114 GLN 115 A GLY 116 n 115 GLY 116 A LYS 117 n 116 LYS 117 A ASP 118 n 117 ASP 118 A ILE 119 n 118 ILE 119 A ILE 120 n 119 ILE 120 A ASN 121 n 120 ASN 121 A ILE 122 n 121 ILE 122 A ARG 123 n 122 ARG 123 A ASN 124 n 123 ASN 124 A GLY 125 n 124 GLY 125 A LEU 126 n 125 LEU 126 A LEU 127 n 126 LEU 127 A VAL 128 n 127 VAL 128 A GLY 129 n 128 GLY 129 A LYS 130 n 129 LYS 130 A ARG 131 n 130 ARG 131 A GLY 132 n 131 GLY 132 A ASP 133 n 132 ASP 133 A GLN 134 n 133 GLN 134 A ASP 135 n 134 ASP 135 A LEU 136 n 135 LEU 136 A MET 137 n 136 MET 137 A ALA 138 n 137 ALA 138 A ALA 139 n 138 ALA 139 A GLY 140 n 139 GLY 140 A ASN 141 n 140 ASN 141 A ALA 142 n 141 ALA 142 A ILE 143 n 142 ILE 143 A GLU 144 n 143 GLU 144 A ARG 145 n 144 ARG 145 A SER 146 n 145 SER 146 A HIS 147 n 146 HIS 147 A LYS 148 n 147 LYS 148 A ASN 149 n 148 ASN 149 A ILE 150 n 149 ILE 150 A SER 151 n 150 SER 151 A GLU 152 n 151 GLU 152 A ILE 153 n 152 ILE 153 A ALA 154 n 153 ALA 154 A ASN 155 n 154 ASN 155 A PHE 156 n 155 PHE 156 A MET 157 n 156 MET 157 A LEU 158 n 157 LEU 158 A SER 159 n 158 SER 159 A GLU 160 n 159 GLU 160 A SER 161 n 160 SER 161 A HIS 162 n 161 HIS 162 A PHE 163 n 162 PHE 163 A PRO 164 n 163 PRO 164 A TYR 165 n 164 TYR 165 A VAL 166 n 165 VAL 166 A LEU 167 n 166 LEU 167 A PHE 168 n 167 PHE 168 A LEU 169 n 168 LEU 169 A GLU 170 n 169 GLU 170 A GLY 171 n 170 GLY 171 A SER 172 n 171 SER 172 A ASN 173 n 172 ASN 173 A PHE 174 n 173 PHE 174 A LEU 175 n 174 LEU 175 A THR 176 n 175 THR 176 A GLU 177 n 176 GLU 177 A ASN 178 n 177 ASN 178 A ILE 179 n 178 ILE 179 A SER 180 n 179 SER 180 A ILE 181 n 180 ILE 181 A THR 182 n 181 THR 182 A ARG 183 n 182 ARG 183 A PRO 184 n 183 PRO 184 A ASP 185 n 184 ASP 185 A GLY 186 n 185 GLY 186 A ARG 187 n 186 ARG 187 A VAL 188 n 187 VAL 188 A VAL 189 n 188 VAL 189 A ASN 190 n 189 ASN 190 A LEU 191 n 190 LEU 191 A GLU 192 n 191 GLU 192 A TYR 193 n 192 TYR 193 A ASN 194 n 193 ASN 194 A SER 195 n 194 SER 195 A GLY 196 n 195 GLY 196 A ILE 197 n 196 ILE 197 A LEU 198 n 197 LEU 198 A ASN 199 n 198 ASN 199 A ARG 200 n 199 ARG 200 A LEU 201 n 200 LEU 201 A ASP 202 n 201 ASP 202 A ARG 203 n 202 ARG 203 A LEU 204 n 203 LEU 204 A THR 205 n 204 THR 205 A ALA 206 n 205 ALA 206 A ALA 207 n 206 ALA 207 A ASN 208 n 207 ASN 208 A TYR 209 n 208 TYR 209 A GLY 210 n 209 GLY 210 A MET 211 n 210 MET 211 A PRO 212 n 211 PRO 212 A ILE 213 n 212 ILE 213 A ASN 214 n 213 ASN 214 A SER 215 n 214 SER 215 A ASN 216 n 215 ASN 216 A LEU 217 n 216 LEU 217 A CYS 218 n 217 CYS 218 A ILE 219 n 218 ILE 219 A ASN 220 n 219 ASN 220 A LYS 221 n 220 LYS 221 A PHE 222 n 221 PHE 222 A VAL 223 n 222 VAL 223 A ASN 224 n 223 ASN 224 A HIS 225 n 224 HIS 225 A LYS 226 n 225 LYS 226 A ASP 227 n 226 ASP 227 A LYS 228 n 227 LYS 228 A SER 229 n 228 SER 229 A ILE 230 n 229 ILE 230 A MET 231 n 230 MET 231 A LEU 232 n 231 LEU 232 A GLN 233 n 232 GLN 233 A ALA 234 n 233 ALA 234 A ALA 235 n 234 ALA 235 A SER 236 n 235 SER 236 A ILE 237 n 236 ILE 237 A TYR 238 n 237 TYR 238 A THR 239 n 238 THR 239 A GLN 240 n 239 GLN 240 A GLY 241 n 240 GLY 241 A ASP 242 n 241 ASP 242 A GLY 243 n 242 GLY 243 A ARG 244 n 243 ARG 244 A GLU 245 n 244 GLU 245 A TRP 246 n 245 TRP 246 A ASP 247 n 246 ASP 247 A SER 248 n 247 SER 248 A LYS 249 n 248 LYS 249 A ILE 250 n 249 ILE 250 A MET 251 n 250 MET 251 A PHE 252 n 251 PHE 252 A GLU 253 n 252 GLU 253 A ILE 254 n 253 ILE 254 A MET 255 n 254 MET 255 A PHE 256 n 255 PHE 256 A ASP 257 n 256 ASP 257 A ILE 258 n 257 ILE 258 A SER 259 n 258 SER 259 A THR 260 n 259 THR 260 A THR 261 n 260 THR 261 A SER 262 n 261 SER 262 A LEU 263 n 262 LEU 263 A ARG 264 n 263 ARG 264 A VAL 265 n 264 VAL 265 A LEU 266 n 265 LEU 266 A GLY 267 n 266 GLY 267 A ARG 268 n 267 ARG 268 A ASP 269 n 268 ASP 269 A LEU 270 n 269 LEU 270 A PHE 271 n 270 PHE 271 A GLU 272 n 271 GLU 272 A GLN 273 n 272 GLN 273 A LEU 274 n 273 LEU 274 A THR 275 n 274 THR 275 A SER 276 n 275 SER 276 A LYS 277 n 276 LYS 277 A author_defined_assembly 4 tetrameric B PRN 7 PURINE 2'-DEOXYRIBO-5'-MONOPHOSPHATE A PRN 7 DA 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O ARG 56 B O ARG 55 A N GLU 96 B N GLU 95 A O VAL 95 B O VAL 94 A N LEU 108 B N LEU 107 A O VAL 109 B O VAL 108 A N VAL 166 B N VAL 165 A O LEU 167 B O LEU 166 A N SER 236 B N SER 235 A O ILE 179 B O ILE 178 A N LEU 191 B N LEU 190 A O LYS 221 B O LYS 220 A N LEU 232 B N LEU 231 1 A SER 2 B SER 1 1 Y 1 A ASN 3 B ASN 2 1 Y 1 A LYS 4 B LYS 3 1 Y 1 A LYS 5 B LYS 4 1 Y 1 A GLN 6 B GLN 5 1 Y 1 A SER 7 B SER 6 1 Y 1 A ASN 8 B ASN 7 1 Y 1 A ARG 9 B ARG 8 1 Y 1 A LEU 10 B LEU 9 1 Y 1 A THR 11 B THR 10 1 Y 1 A GLU 12 B GLU 11 1 Y 1 A GLN 13 B GLN 12 1 Y 1 A HIS 14 B HIS 13 1 Y 1 A LYS 15 B LYS 14 1 Y 1 A LEU 16 B LEU 15 1 Y 1 A LEU 81 -169.11 98.06 1 A GLN 115 -170.88 132.93 1 A ASP 133 -144.20 -11.43 1 A PRO 164 -79.07 48.50 1 A ASN 224 176.81 143.23 1 A ASP 227 -69.19 86.31 1 A LYS 228 -134.77 -58.89 1 A SER 229 77.61 118.09 1 A THR 275 -99.32 -68.49 PARHCSDX.PRO TOPHCSDX.PRO PARAM11.WAT TOPH19.PEP MODIFIED DNA-RNA.PARAM TOPH11.WAT DNA-RNA.TOP 36.1 DNA-RNA.PARAM WAS MODIFIED TO CONTAIN A MODIFIED RESIDUE PRN 0.2870000 0.2430000 0.2430000 1.80 8 3528 35192 10 98.3 RANDOM 10000000 0.001 1 RESTRAINED RFREE 2 OTHER PDB ENTRY 1CKQ .37 .34 8 .30 .28 1.80 8 158 2471 0 262 2051 0.004 1.067 0.805 0.3576000 0.3568000 1.88 326 2898 8 10.1 91 1.80 8 1CL8 35192 2 0.1050000 1 19.3 10.3 98.3 0.4320000 1.80 1.85 2.6 4.0 91.0 model building X-PLOR refinement X-PLOR 3.851 data reduction DENZO data scaling SCALEPACK phasing X-PLOR A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P) 1 N N 2 N N 3 N N 3 N N A GLY 19 B GLY 18 HELX_P A HIS 31 B HIS 30 5 1 13 A VAL 35 B VAL 34 HELX_P A GLU 49 B GLU 48 1 2 15 A LYS 63 B LYS 62 HELX_P A ILE 73 B ILE 72 1 3 11 A ASP 118 B ASP 117 HELX_P A ARG 123 B ARG 122 1 4 6 A ALA 142 B ALA 141 HELX_P A PHE 156 B PHE 155 5 5 15 A LEU 201 B LEU 200 HELX_P A ARG 203 B ARG 202 5 6 3 A THR 205 B THR 204 HELX_P A ASN 208 B ASN 207 5 7 4 A SER 248 B SER 247 HELX_P A VAL 265 B VAL 264 1 8 18 A GLY 267 B GLY 266 HELX_P A ASP 269 B ASP 268 5 9 3 A PHE 271 B PHE 270 HELX_P A THR 275 B THR 274 1 10 5 covale 1.604 both B DA 6 A O3' DA 6 1_555 B PRN 7 A P PRN 7 1_555 covale 1.609 both B PRN 7 A O3' PRN 7 1_555 B DT 8 A P DT 8 1_555 hydrog WATSON-CRICK B DC 2 A N3 DC 2 1_555 B DG 13 A N1 DG 13 4_555 hydrog WATSON-CRICK B DC 2 A N4 DC 2 1_555 B DG 13 A O6 DG 13 4_555 hydrog WATSON-CRICK B DC 2 A O2 DC 2 1_555 B DG 13 A N2 DG 13 4_555 hydrog WATSON-CRICK B DG 3 A N1 DG 3 1_555 B DC 12 A N3 DC 12 4_555 hydrog WATSON-CRICK B DG 3 A N2 DG 3 1_555 B DC 12 A O2 DC 12 4_555 hydrog WATSON-CRICK B DG 3 A O6 DG 3 1_555 B DC 12 A N4 DC 12 4_555 hydrog WATSON-CRICK B DC 4 A N3 DC 4 1_555 B DG 11 A N1 DG 11 4_555 hydrog WATSON-CRICK B DC 4 A N4 DC 4 1_555 B DG 11 A O6 DG 11 4_555 hydrog WATSON-CRICK B DC 4 A O2 DC 4 1_555 B DG 11 A N2 DG 11 4_555 hydrog WATSON-CRICK B DG 5 A N1 DG 5 1_555 B DC 10 A N3 DC 10 4_555 hydrog WATSON-CRICK B DG 5 A N2 DG 5 1_555 B DC 10 A O2 DC 10 4_555 hydrog WATSON-CRICK B DG 5 A O6 DG 5 1_555 B DC 10 A N4 DC 10 4_555 hydrog WATSON-CRICK B DA 6 A N1 DA 6 1_555 B DT 9 A N3 DT 9 4_555 hydrog WATSON-CRICK B DA 6 A N6 DA 6 1_555 B DT 9 A O4 DT 9 4_555 hydrog PRN-DT PAIR B PRN 7 A N1 PRN 7 1_555 B DT 8 A N3 DT 8 4_555 hydrog DT-PRN PAIR B DT 8 A N3 DT 8 1_555 B PRN 7 A N1 PRN 7 4_555 hydrog WATSON-CRICK B DT 9 A N3 DT 9 1_555 B DA 6 A N1 DA 6 4_555 hydrog WATSON-CRICK B DT 9 A O4 DT 9 1_555 B DA 6 A N6 DA 6 4_555 hydrog WATSON-CRICK B DC 10 A N3 DC 10 1_555 B DG 5 A N1 DG 5 4_555 hydrog WATSON-CRICK B DC 10 A N4 DC 10 1_555 B DG 5 A O6 DG 5 4_555 hydrog WATSON-CRICK B DC 10 A O2 DC 10 1_555 B DG 5 A N2 DG 5 4_555 hydrog WATSON-CRICK B DG 11 A N1 DG 11 1_555 B DC 4 A N3 DC 4 4_555 hydrog WATSON-CRICK B DG 11 A N2 DG 11 1_555 B DC 4 A O2 DC 4 4_555 hydrog WATSON-CRICK B DG 11 A O6 DG 11 1_555 B DC 4 A N4 DC 4 4_555 hydrog WATSON-CRICK B DC 12 A N3 DC 12 1_555 B DG 3 A N1 DG 3 4_555 hydrog WATSON-CRICK B DC 12 A N4 DC 12 1_555 B DG 3 A O6 DG 3 4_555 hydrog WATSON-CRICK B DC 12 A O2 DC 12 1_555 B DG 3 A N2 DG 3 4_555 hydrog WATSON-CRICK B DG 13 A N1 DG 13 1_555 B DC 2 A N3 DC 2 4_555 hydrog WATSON-CRICK B DG 13 A N2 DG 13 1_555 B DC 2 A O2 DC 2 4_555 hydrog WATSON-CRICK B DG 13 A O6 DG 13 1_555 B DC 2 A N4 DC 2 4_555 PROTEIN/DNA ENDONUCLEASE/DNA, DNA BASE ANALOG, PROTEIN-DNA COMPLEX T2E1_ECOLI UNP 2 P00642 1CL8 PDB 1 1CL8 1 276 1CL8 2 277 P00642 A 1 1 276 1 13 1CL8 1 13 1CL8 B 2 1 13 5 2 2 anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel A PHE 55 B PHE 54 A ARG 58 B ARG 57 A ILE 94 B ILE 93 A LYS 98 B LYS 97 A TRP 104 B TRP 103 A HIS 114 B HIS 113 A TYR 165 B TYR 164 A GLU 170 B GLU 169 A SER 236 B SER 235 A GLN 240 B GLN 239 A ILE 179 B ILE 178 A THR 182 B THR 181 A VAL 188 B VAL 187 A LEU 191 B LEU 190 A LYS 221 B LYS 220 A VAL 223 B VAL 222 A ILE 230 B ILE 229 A LEU 232 B LEU 231 PROTEIN RECOGNTION RESIDUES INVOLVED IN HYDROGEN BONDING CONTACTS AT THE SITE OF PERTURBATION Author 6 DNA RECOGNITION SEQUENCE Author 6 A ALA 142 B ALA 141 6 1_555 A ASN 141 B ASN 140 6 1_555 B DA 6 A DA 6 6 1_555 B PRN 7 A PRN 7 6 1_555 B DT 8 A DT 8 6 1_555 B DT 9 A DT 9 6 1_555 B DG 5 A DG 5 6 1_555 B DA 6 A DA 6 6 1_555 B PRN 7 A PRN 7 6 1_555 B DT 8 A DT 8 6 1_555 B DT 9 A DT 9 6 1_555 B DC 10 A DC 10 6 1_555 150 trigonal P 3 2 1