0.012240 0.000000 0.000000 0.000000 0.012240 0.000000 0.000000 0.000000 0.006013 0.00000 0.00000 0.00000 Sheriff, S. Bajorath, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 81.700 81.700 166.300 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O5 164.156 alpha-L-fucopyranose L-saccharide, alpha linking C6 H12 O6 180.156 beta-D-galactopyranose D-saccharide, beta linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C10 H20 O2 172.265 METHYL NONANOATE (ESTER) non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 2 466 471 10.1038/nsb0695-466 7664109 The x-ray structure of an anti-tumour antibody in complex with antigen. 1995 UK J.Mol.Biol. JMOBAK 0070 0022-2836 235 372 Crystallization and Preliminary X-Ray Analysis of the Monoclonal Anti-Tumor Antibody Br96 and its Complex with the Lewis Y Determinant 1994 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295 1 IMAGE PLATE 1993-07 RIGAKU RAXIS IIC GRAPHITE(002) M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER 24077.883 IGG FAB (HUMAN IGG1, KAPPA) CHIMERIC FRAGMENT (BR96) 1 man polymer COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER 23609.449 IGG FAB (HUMAN IGG1, KAPPA) CHIMERIC FRAGMENT (BR96) 1 man polymer 675.630 alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 172.265 METHYL NONANOATE (ESTER) 1 syn non-polymer CBR96 FAB (IMMUNOGLOBULIN) CBR96 FAB (IMMUNOGLOBULIN) Lewis Y antigen, beta anomer no no DVLMTQIPVSLPVSLGDQASISCRSSQIIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQ SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC DVLMTQIPVSLPVSLGDQASISCRSSQIIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQ SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC L polypeptide(L) no no EVNLVESGGGLVQPGGSLKVSCVTSGFTFSDYYMYWVRQTPEKRLEWVAYISQGGDITDYPDTVKGRFTISRDNAKNSLY LQMSRLKSEDTAMYYCARGLDDGAWFAYWGQGTLVTVSVASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP EVNLVESGGGLVQPGGSLKVSCVTSGFTFSDYYMYWVRQTPEKRLEWVAYISQGGDITDYPDTVKGRFTISRDNAKNSLY LQMSRLKSEDTAMYYCARGLDDGAWFAYWGQGTLVTVSVASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample HYBRIDOMA PRODUCED BY FUSIONING BALB/C SPLEEN CELLS WITH P2X63-AG 8.653 MOUSE MYELOMA CELLS. HUMAN CONSTANT REGIONS INTRODUCED BY HOMOLOGOUS RECOMBINATION CH1, IGG1 9606 Homo sapiens human Homo sample HYBRIDOMA PRODUCED BY FUSIONING BALB/C SPLEEN CELLS WITH P2X63-AG 8.653 MOUSE MYELOMA CELLS. HUMAN CONSTANT REGIONS INTRODUCED BY HOMOLOGOUS RECOMBINATION CH1, IGG1 9606 Homo sapiens 1 2.8 56. 7.5 pH 7.5 atom_site chem_comp entity entity_name_com pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_database_status pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_molecule_features pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_unobs_or_zero_occ_residues struct_asym struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Advisory Atomic model Data collection Derived calculations Other Structure summary 1 0 1996-08-01 1 1 2008-03-24 1 2 2011-07-13 2 0 2020-07-29 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_database_status.process_site _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id Y NAG 3 n A NAG 1 Y GAL 2 n A GAL 2 Y FUC 1 n A FUC 3 Y FUC 4 n A FUC 4 LFucpa a-L-fucopyranose a-L-Fucp Fuc DGalpb b-D-galactopyranose b-D-Galp Gal DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Y BNL 1995-03-15 REL REL oligosaccharide LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-ROH 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-2/a3-b1_a4-c1_c2-d1 3 PDB2Glycan 1.1.0 WURCS [][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-Galp]{[(2+1)][a-L-Fucp]{}}} 3 PDB-CARE LINUCS C1 O4 GAL NAG 2 1 3 O1 HO4 sing C1 O2 FUC GAL 3 2 3 O1 HO2 sing C1 O3 FUC NAG 4 1 3 O1 HO3 sing n n n n NON METHYL NONANOATE (ESTER) THE FAB LIGHT CHAIN (RESIDUES 1 - 214) HAS BEEN ASSIGNED CHAIN INDICATOR L. THE FAB HEAVY CHAIN (RESIDUES 1 - 231) HAS BEEN ASSIGNED CHAIN INDICATOR H. THE FAB FRAGMENT IS NUMBERED BY THE CONVENTION OF E. KABAT (E.A. KABAT, T.T. WU, H.M. PERRY, K.S. GOTTESMAN, C. FOELLER SEQUENCES OF PROTEINS OF IMMUNOLOGICAL INTEREST, 5TH ED., (1991), NATIONAL INSTITUTES OF HEALTH, BETHESDA, MD.). Antigen oligosaccharide with branches Lewis Y antigen, beta anomer Oligosaccharide NON 5 4 NON NON 232 H n 1 1 L n 2 2 L LEU 3 n 3 LEU 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L ILE 7 n 7 ILE 7 L PRO 8 n 8 PRO 8 L VAL 9 n 9 VAL 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L PRO 12 n 12 PRO 12 L VAL 13 n 13 VAL 13 L SER 14 n 14 SER 14 L LEU 15 n 15 LEU 15 L GLY 16 n 16 GLY 16 L ASP 17 n 17 ASP 17 L GLN 18 n 18 GLN 18 L ALA 19 n 19 ALA 19 L SER 20 n 20 SER 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L SER 25 n 25 SER 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L ILE 27 n 28 A ILE 27 L ILE 27 n 29 B ILE 27 L VAL 27 n 30 C VAL 27 L HIS 27 n 31 D HIS 27 L ASN 27 n 32 E ASN 27 L ASN 28 n 33 ASN 28 L GLY 29 n 34 GLY 29 L ASN 30 n 35 ASN 30 L THR 31 n 36 THR 31 L TYR 32 n 37 TYR 32 L LEU 33 n 38 LEU 33 L GLU 34 n 39 GLU 34 L TRP 35 n 40 TRP 35 L TYR 36 n 41 TYR 36 L LEU 37 n 42 LEU 37 L GLN 38 n 43 GLN 38 L LYS 39 n 44 LYS 39 L PRO 40 n 45 PRO 40 L GLY 41 n 46 GLY 41 L GLN 42 n 47 GLN 42 L SER 43 n 48 SER 43 L PRO 44 n 49 PRO 44 L GLN 45 n 50 GLN 45 L LEU 46 n 51 LEU 46 L LEU 47 n 52 LEU 47 L ILE 48 n 53 ILE 48 L TYR 49 n 54 TYR 49 L LYS 50 n 55 LYS 50 L VAL 51 n 56 VAL 51 L SER 52 n 57 SER 52 L ASN 53 n 58 ASN 53 L ARG 54 n 59 ARG 54 L PHE 55 n 60 PHE 55 L SER 56 n 61 SER 56 L GLY 57 n 62 GLY 57 L VAL 58 n 63 VAL 58 L PRO 59 n 64 PRO 59 L ASP 60 n 65 ASP 60 L ARG 61 n 66 ARG 61 L PHE 62 n 67 PHE 62 L SER 63 n 68 SER 63 L GLY 64 n 69 GLY 64 L SER 65 n 70 SER 65 L GLY 66 n 71 GLY 66 L SER 67 n 72 SER 67 L GLY 68 n 73 GLY 68 L THR 69 n 74 THR 69 L ASP 70 n 75 ASP 70 L PHE 71 n 76 PHE 71 L THR 72 n 77 THR 72 L LEU 73 n 78 LEU 73 L LYS 74 n 79 LYS 74 L ILE 75 n 80 ILE 75 L SER 76 n 81 SER 76 L ARG 77 n 82 ARG 77 L VAL 78 n 83 VAL 78 L GLU 79 n 84 GLU 79 L ALA 80 n 85 ALA 80 L GLU 81 n 86 GLU 81 L ASP 82 n 87 ASP 82 L LEU 83 n 88 LEU 83 L GLY 84 n 89 GLY 84 L VAL 85 n 90 VAL 85 L TYR 86 n 91 TYR 86 L TYR 87 n 92 TYR 87 L CYS 88 n 93 CYS 88 L PHE 89 n 94 PHE 89 L GLN 90 n 95 GLN 90 L GLY 91 n 96 GLY 91 L SER 92 n 97 SER 92 L HIS 93 n 98 HIS 93 L VAL 94 n 99 VAL 94 L PRO 95 n 100 PRO 95 L PHE 96 n 101 PHE 96 L THR 97 n 102 THR 97 L PHE 98 n 103 PHE 98 L GLY 99 n 104 GLY 99 L SER 100 n 105 SER 100 L GLY 101 n 106 GLY 101 L THR 102 n 107 THR 102 L LYS 103 n 108 LYS 103 L LEU 104 n 109 LEU 104 L GLU 105 n 110 GLU 105 L ILE 106 n 111 ILE 106 L LYS 107 n 112 LYS 107 L ARG 108 n 113 ARG 108 L THR 109 n 114 THR 109 L VAL 110 n 115 VAL 110 L ALA 111 n 116 ALA 111 L ALA 112 n 117 ALA 112 L PRO 113 n 118 PRO 113 L SER 114 n 119 SER 114 L VAL 115 n 120 VAL 115 L PHE 116 n 121 PHE 116 L ILE 117 n 122 ILE 117 L PHE 118 n 123 PHE 118 L PRO 119 n 124 PRO 119 L PRO 120 n 125 PRO 120 L SER 121 n 126 SER 121 L ASP 122 n 127 ASP 122 L GLU 123 n 128 GLU 123 L GLN 124 n 129 GLN 124 L LEU 125 n 130 LEU 125 L LYS 126 n 131 LYS 126 L SER 127 n 132 SER 127 L GLY 128 n 133 GLY 128 L THR 129 n 134 THR 129 L ALA 130 n 135 ALA 130 L SER 131 n 136 SER 131 L VAL 132 n 137 VAL 132 L VAL 133 n 138 VAL 133 L CYS 134 n 139 CYS 134 L LEU 135 n 140 LEU 135 L LEU 136 n 141 LEU 136 L ASN 137 n 142 ASN 137 L ASN 138 n 143 ASN 138 L PHE 139 n 144 PHE 139 L TYR 140 n 145 TYR 140 L PRO 141 n 146 PRO 141 L ARG 142 n 147 ARG 142 L GLU 143 n 148 GLU 143 L ALA 144 n 149 ALA 144 L LYS 145 n 150 LYS 145 L VAL 146 n 151 VAL 146 L GLN 147 n 152 GLN 147 L TRP 148 n 153 TRP 148 L LYS 149 n 154 LYS 149 L VAL 150 n 155 VAL 150 L ASP 151 n 156 ASP 151 L ASN 152 n 157 ASN 152 L ALA 153 n 158 ALA 153 L LEU 154 n 159 LEU 154 L GLN 155 n 160 GLN 155 L SER 156 n 161 SER 156 L GLY 157 n 162 GLY 157 L ASN 158 n 163 ASN 158 L SER 159 n 164 SER 159 L GLN 160 n 165 GLN 160 L GLU 161 n 166 GLU 161 L SER 162 n 167 SER 162 L VAL 163 n 168 VAL 163 L THR 164 n 169 THR 164 L GLU 165 n 170 GLU 165 L GLN 166 n 171 GLN 166 L ASP 167 n 172 ASP 167 L SER 168 n 173 SER 168 L LYS 169 n 174 LYS 169 L ASP 170 n 175 ASP 170 L SER 171 n 176 SER 171 L THR 172 n 177 THR 172 L TYR 173 n 178 TYR 173 L SER 174 n 179 SER 174 L LEU 175 n 180 LEU 175 L SER 176 n 181 SER 176 L SER 177 n 182 SER 177 L THR 178 n 183 THR 178 L LEU 179 n 184 LEU 179 L THR 180 n 185 THR 180 L LEU 181 n 186 LEU 181 L SER 182 n 187 SER 182 L LYS 183 n 188 LYS 183 L ALA 184 n 189 ALA 184 L ASP 185 n 190 ASP 185 L TYR 186 n 191 TYR 186 L GLU 187 n 192 GLU 187 L LYS 188 n 193 LYS 188 L HIS 189 n 194 HIS 189 L LYS 190 n 195 LYS 190 L VAL 191 n 196 VAL 191 L TYR 192 n 197 TYR 192 L ALA 193 n 198 ALA 193 L CYS 194 n 199 CYS 194 L GLU 195 n 200 GLU 195 L VAL 196 n 201 VAL 196 L THR 197 n 202 THR 197 L HIS 198 n 203 HIS 198 L GLN 199 n 204 GLN 199 L GLY 200 n 205 GLY 200 L LEU 201 n 206 LEU 201 L SER 202 n 207 SER 202 L SER 203 n 208 SER 203 L PRO 204 n 209 PRO 204 L VAL 205 n 210 VAL 205 L THR 206 n 211 THR 206 L LYS 207 n 212 LYS 207 L SER 208 n 213 SER 208 L PHE 209 n 214 PHE 209 L ASN 210 n 215 ASN 210 L ARG 211 n 216 ARG 211 L GLY 212 n 217 GLY 212 L GLU 213 n 218 GLU 213 L CYS 214 n 219 CYS 214 L GLU 1 n 1 GLU 1 H VAL 2 n 2 VAL 2 H ASN 3 n 3 ASN 3 H LEU 4 n 4 LEU 4 H VAL 5 n 5 VAL 5 H GLU 6 n 6 GLU 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H GLY 9 n 9 GLY 9 H GLY 10 n 10 GLY 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H GLN 13 n 13 GLN 13 H PRO 14 n 14 PRO 14 H GLY 15 n 15 GLY 15 H GLY 16 n 16 GLY 16 H SER 17 n 17 SER 17 H LEU 18 n 18 LEU 18 H LYS 19 n 19 LYS 19 H VAL 20 n 20 VAL 20 H SER 21 n 21 SER 21 H CYS 22 n 22 CYS 22 H VAL 23 n 23 VAL 23 H THR 24 n 24 THR 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H PHE 27 n 27 PHE 27 H THR 28 n 28 THR 28 H PHE 29 n 29 PHE 29 H SER 30 n 30 SER 30 H ASP 31 n 31 ASP 31 H TYR 32 n 32 TYR 32 H TYR 33 n 33 TYR 33 H MET 34 n 34 MET 34 H TYR 35 n 35 TYR 35 H TRP 36 n 36 TRP 36 H VAL 37 n 37 VAL 37 H ARG 38 n 38 ARG 38 H GLN 39 n 39 GLN 39 H THR 40 n 40 THR 40 H PRO 41 n 41 PRO 41 H GLU 42 n 42 GLU 42 H LYS 43 n 43 LYS 43 H ARG 44 n 44 ARG 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TRP 47 n 47 TRP 47 H VAL 48 n 48 VAL 48 H ALA 49 n 49 ALA 49 H TYR 50 n 50 TYR 50 H ILE 51 n 51 ILE 51 H SER 52 n 52 SER 52 H GLN 52 n 53 A GLN 52 H GLY 53 n 54 GLY 53 H GLY 54 n 55 GLY 54 H ASP 55 n 56 ASP 55 H ILE 56 n 57 ILE 56 H THR 57 n 58 THR 57 H ASP 58 n 59 ASP 58 H TYR 59 n 60 TYR 59 H PRO 60 n 61 PRO 60 H ASP 61 n 62 ASP 61 H THR 62 n 63 THR 62 H VAL 63 n 64 VAL 63 H LYS 64 n 65 LYS 64 H GLY 65 n 66 GLY 65 H ARG 66 n 67 ARG 66 H PHE 67 n 68 PHE 67 H THR 68 n 69 THR 68 H ILE 69 n 70 ILE 69 H SER 70 n 71 SER 70 H ARG 71 n 72 ARG 71 H ASP 72 n 73 ASP 72 H ASN 73 n 74 ASN 73 H ALA 74 n 75 ALA 74 H LYS 75 n 76 LYS 75 H ASN 76 n 77 ASN 76 H SER 77 n 78 SER 77 H LEU 78 n 79 LEU 78 H TYR 79 n 80 TYR 79 H LEU 80 n 81 LEU 80 H GLN 81 n 82 GLN 81 H MET 82 n 83 MET 82 H SER 82 n 84 A SER 82 H ARG 82 n 85 B ARG 82 H LEU 82 n 86 C LEU 82 H LYS 83 n 87 LYS 83 H SER 84 n 88 SER 84 H GLU 85 n 89 GLU 85 H ASP 86 n 90 ASP 86 H THR 87 n 91 THR 87 H ALA 88 n 92 ALA 88 H MET 89 n 93 MET 89 H TYR 90 n 94 TYR 90 H TYR 91 n 95 TYR 91 H CYS 92 n 96 CYS 92 H ALA 93 n 97 ALA 93 H ARG 94 n 98 ARG 94 H GLY 95 n 99 GLY 95 H LEU 96 n 100 LEU 96 H ASP 97 n 101 ASP 97 H ASP 98 n 102 ASP 98 H GLY 99 n 103 GLY 99 H ALA 100 n 104 ALA 100 H TRP 100 n 105 A TRP 100 H PHE 100 n 106 B PHE 100 H ALA 101 n 107 ALA 101 H TYR 102 n 108 TYR 102 H TRP 103 n 109 TRP 103 H GLY 104 n 110 GLY 104 H GLN 105 n 111 GLN 105 H GLY 106 n 112 GLY 106 H THR 107 n 113 THR 107 H LEU 108 n 114 LEU 108 H VAL 109 n 115 VAL 109 H THR 110 n 116 THR 110 H VAL 111 n 117 VAL 111 H SER 112 n 118 SER 112 H VAL 113 n 119 VAL 113 H ALA 114 n 120 ALA 114 H SER 115 n 121 SER 115 H THR 116 n 122 THR 116 H LYS 117 n 123 LYS 117 H GLY 118 n 124 GLY 118 H PRO 119 n 125 PRO 119 H SER 120 n 126 SER 120 H VAL 121 n 127 VAL 121 H PHE 122 n 128 PHE 122 H PRO 123 n 129 PRO 123 H LEU 124 n 130 LEU 124 H ALA 125 n 131 ALA 125 H PRO 126 n 132 PRO 126 H SER 127 n 133 SER 127 H SER 128 n 134 SER 128 H LYS 129 n 135 LYS 129 H SER 130 n 136 SER 130 H THR 133 n 137 THR 133 H SER 134 n 138 SER 134 H GLY 135 n 139 GLY 135 H GLY 136 n 140 GLY 136 H THR 137 n 141 THR 137 H ALA 138 n 142 ALA 138 H ALA 139 n 143 ALA 139 H LEU 140 n 144 LEU 140 H GLY 141 n 145 GLY 141 H CYS 142 n 146 CYS 142 H LEU 143 n 147 LEU 143 H VAL 144 n 148 VAL 144 H LYS 145 n 149 LYS 145 H ASP 146 n 150 ASP 146 H TYR 147 n 151 TYR 147 H PHE 148 n 152 PHE 148 H PRO 149 n 153 PRO 149 H GLN 150 n 154 GLN 150 H PRO 151 n 155 PRO 151 H VAL 152 n 156 VAL 152 H THR 153 n 157 THR 153 H VAL 154 n 158 VAL 154 H SER 156 n 159 SER 156 H TRP 157 n 160 TRP 157 H ASN 162 n 161 ASN 162 H SER 163 n 162 SER 163 H GLY 164 n 163 GLY 164 H ALA 165 n 164 ALA 165 H LEU 166 n 165 LEU 166 H THR 167 n 166 THR 167 H SER 168 n 167 SER 168 H GLY 169 n 168 GLY 169 H VAL 171 n 169 VAL 171 H HIS 172 n 170 HIS 172 H THR 173 n 171 THR 173 H PHE 174 n 172 PHE 174 H PRO 175 n 173 PRO 175 H ALA 176 n 174 ALA 176 H VAL 177 n 175 VAL 177 H LEU 178 n 176 LEU 178 H GLN 179 n 177 GLN 179 H SER 180 n 178 SER 180 H SER 182 n 179 SER 182 H GLY 183 n 180 GLY 183 H LEU 184 n 181 LEU 184 H TYR 185 n 182 TYR 185 H SER 186 n 183 SER 186 H LEU 187 n 184 LEU 187 H SER 188 n 185 SER 188 H SER 189 n 186 SER 189 H VAL 190 n 187 VAL 190 H VAL 191 n 188 VAL 191 H THR 192 n 189 THR 192 H VAL 193 n 190 VAL 193 H PRO 194 n 191 PRO 194 H SER 195 n 192 SER 195 H SER 196 n 193 SER 196 H SER 197 n 194 SER 197 H LEU 198 n 195 LEU 198 H GLY 199 n 196 GLY 199 H THR 200 n 197 THR 200 H GLN 203 n 198 GLN 203 H THR 205 n 199 THR 205 H TYR 206 n 200 TYR 206 H ILE 207 n 201 ILE 207 H CYS 208 n 202 CYS 208 H ASN 209 n 203 ASN 209 H VAL 210 n 204 VAL 210 H ASN 211 n 205 ASN 211 H HIS 212 n 206 HIS 212 H LYS 213 n 207 LYS 213 H PRO 214 n 208 PRO 214 H SER 215 n 209 SER 215 H ASN 216 n 210 ASN 216 H THR 217 n 211 THR 217 H LYS 218 n 212 LYS 218 H VAL 219 n 213 VAL 219 H ASP 220 n 214 ASP 220 H LYS 221 n 215 LYS 221 H ARG 222 n 216 ARG 222 H VAL 223 n 217 VAL 223 H GLU 226 n 218 GLU 226 H PRO 227 n 219 PRO 227 H author_and_software_defined_assembly PISA 2 dimeric 5640 -2 18870 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L O THR 5 A O THR 5 L N ARG 24 A N ARG 24 L O ALA 19 A O ALA 19 L N ILE 75 A N ILE 80 L O ASP 70 A O ASP 75 L N SER 67 A N SER 72 L O LEU 11 A O LEU 11 L N LYS 103 A N LYS 108 L O THR 102 A O THR 107 L N TYR 86 A N TYR 91 L O VAL 85 A O VAL 90 L N GLN 38 A N GLN 43 L O TRP 35 A O TRP 40 L N ILE 48 A N ILE 53 L O SER 114 A O SER 119 L N ASN 137 A N ASN 142 L O ALA 130 A O ALA 135 L N LEU 181 A N LEU 186 L O SER 176 A O SER 181 L N SER 162 A N SER 167 L O LYS 145 A O LYS 150 L N THR 197 A N THR 202 L O TYR 192 A O TYR 197 L N PHE 209 A N PHE 214 H O ASN 3 B O ASN 3 H N SER 25 B N SER 25 H O LEU 18 B O LEU 18 H N MET 82 B N MET 83 H O SER 77 B O SER 78 H N ASP 72 B N ASP 73 H O THR 107 B O THR 113 H N TYR 90 B N TYR 94 H O MET 89 B O MET 93 H N GLN 39 B N GLN 39 H O MET 34 B O MET 34 H N ILE 51 B N ILE 51 H O TYR 50 B O TYR 50 H N ASP 58 B N ASP 59 H O SER 120 B O SER 126 H N LYS 145 B N LYS 149 H O ALA 138 B O ALA 142 H N VAL 193 B N VAL 190 H O VAL 190 B O VAL 187 H N HIS 172 B N HIS 170 H O THR 153 B O THR 157 H N ASN 211 B N ASN 205 H O TYR 206 B O TYR 200 H N VAL 223 B N VAL 217 1 H CG GLU 1 B CG GLU 1 1 Y 1 H CD GLU 1 B CD GLU 1 1 Y 1 H OE1 GLU 1 B OE1 GLU 1 1 Y 1 H OE2 GLU 1 B OE2 GLU 1 1 Y 1 L ASP 1 A ASP 1 1 Y 1 L VAL 2 A VAL 2 1 Y D 1 L HIS 27 -86.90 -121.07 E 1 L ASN 27 -86.44 40.63 1 L ASN 28 58.46 6.76 1 L ASN 30 73.27 165.54 1 L VAL 51 67.40 -48.39 1 L ASP 60 -64.96 2.58 1 L THR 129 -47.97 106.82 1 L ASN 138 19.64 82.60 1 L PRO 141 -65.32 -172.92 1 L ASP 151 66.78 -71.97 1 L ASN 152 -159.68 9.30 1 L ASN 158 -75.42 43.47 1 L ASP 170 -153.32 8.11 1 L LYS 183 -25.95 -50.95 1 H ALA 88 -175.77 -176.43 B 1 H PHE 100 -112.55 72.79 1 H SER 128 -162.12 -43.28 1 H SER 130 -175.60 -22.94 1 H THR 137 -175.00 138.41 1 H ASP 146 43.36 98.02 1 H PHE 148 -173.31 139.61 1 H ALA 165 -95.66 41.68 1 H LEU 166 -172.72 82.01 1 H THR 167 -90.95 -72.35 1 H GLN 179 -58.74 -179.22 1 H HIS 212 -117.57 78.38 1 H PRO 214 -57.33 -7.03 PARHCSDX.PRO (ENGH & HUBE TOPHCSDX.PRO (ENGH & HUBER) PARAME_MOD.CHO TOPH3.CHO 47.7 0.298 0.238 0.238 2.5 8. 1741 17177 10. 91. 1 EX POST FACTO 1. 0.37 2.5 8. 0 3395 58 0 3337 0.009 1.6 27.1 1.3 0.376 0.334 2.61 160 1558 7.5 71.7 2.51 57.8 1CLY 20051 0.0 0.059 1 11.9 3. 91.7 0.305 2.51 2.75 2.0 1 90.8 data collection R-AXIS data reduction R-AXIS refinement X-PLOR data scaling R-AXIS IGG FAB (HUMAN IGG1, KAPPA), METHYL NONANOATE (ESTER) IGG FAB (HUMAN IGG1, KAPPA) CHIMERIC FRAGMENT (CBR96) COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER 1 N N 2 N N 3 N N 4 N N L ALA 80 A ALA 85 HELX_P L ASP 82 A ASP 87 5 1 3 L ASP 122 A ASP 127 HELX_P L LEU 125 A LEU 130 1 2 4 L LYS 183 A LYS 188 HELX_P L GLU 187 A GLU 192 1 3 5 H PHE 29 B PHE 29 HELX_P H ASP 31 B ASP 31 5 4 3 H ASP 61 B ASP 62 HELX_P H VAL 63 B VAL 64 5 5 3 H ASN 73 B ASN 74 HELX_P H LYS 75 B LYS 76 5 6 3 H SER 84 B SER 88 HELX_P H ASP 86 B ASP 90 5 7 3 H ASN 162 B ASN 161 HELX_P H GLY 164 B GLY 163 5 8 3 H SER 195 B SER 192 HELX_P H SER 197 B SER 194 5 9 3 H LYS 213 B LYS 207 HELX_P H SER 215 B SER 209 5 10 3 disulf 2.030 L CYS 23 A SG CYS 23 1_555 L CYS 88 A SG CYS 93 1_555 disulf 2.027 L CYS 134 A SG CYS 139 1_555 L CYS 194 A SG CYS 199 1_555 disulf 2.029 H CYS 22 B SG CYS 22 1_555 H CYS 92 B SG CYS 96 1_555 disulf 2.019 H CYS 142 B SG CYS 146 1_555 H CYS 208 B SG CYS 202 1_555 covale 1.442 one H NON 232 D C9 NON 1_555 A NAG 1 C O1 NAG 1_555 covale 1.399 both A NAG 1 C O4 NAG 1_555 A GAL 2 C C1 GAL 1_555 covale 1.414 both A NAG 1 C O3 NAG 1_555 A FUC 4 C C1 FUC 1_555 covale 1.390 both A GAL 2 C O2 GAL 1_555 A FUC 3 C C1 FUC 1_555 IMMUNOGLOBULIN IMMUNOGLOBULIN, IMMUNOGLOBULIN C REGION, GLYCOPROTEIN, ANTIB L ILE 7 A ILE 7 1 L PRO 8 A PRO 8 -0.28 L VAL 94 A VAL 99 1 L PRO 95 A PRO 100 0.06 L TYR 140 A TYR 145 1 L PRO 141 A PRO 146 -0.43 H PHE 148 B PHE 152 1 H PRO 149 B PRO 153 -0.34 H GLN 150 B GLN 154 1 H PRO 151 B PRO 155 0.41 1CLY PDB 1 1CLY 1CLY PDB 2 1CLY 1 214 1CLY 1 214 1CLY L 1 1 219 1 227 1CLY 1 227 1CLY H 2 1 219 4 5 4 3 4 5 4 3 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L MET 4 A MET 4 L ILE 7 A ILE 7 L ALA 19 A ALA 19 L SER 25 A SER 25 L ASP 70 A ASP 75 L ILE 75 A ILE 80 L PHE 62 A PHE 67 L SER 67 A SER 72 L SER 10 A SER 10 L SER 14 A SER 14 L THR 102 A THR 107 L LYS 107 A LYS 112 L GLY 84 A GLY 89 L GLN 90 A GLN 95 L LEU 33 A LEU 38 L GLN 38 A GLN 43 L GLN 45 A GLN 50 L ILE 48 A ILE 53 L SER 114 A SER 119 L PHE 118 A PHE 123 L ALA 130 A ALA 135 L ASN 137 A ASN 142 L LEU 175 A LEU 180 L LEU 181 A LEU 186 L SER 159 A SER 164 L VAL 163 A VAL 168 L ALA 144 A ALA 149 L VAL 150 A VAL 155 L VAL 191 A VAL 196 L HIS 198 A HIS 203 L VAL 205 A VAL 210 L ASN 210 A ASN 215 H ASN 3 B ASN 3 H SER 7 B SER 7 H SER 17 B SER 17 H SER 25 B SER 25 H SER 77 B SER 78 H SER 82 B SER 84 A H PHE 67 B PHE 68 H ASP 72 B ASP 73 H THR 107 B THR 113 H VAL 109 B VAL 115 H ALA 88 B ALA 92 H ARG 94 B ARG 98 H MET 34 B MET 34 H THR 40 B THR 40 H LEU 45 B LEU 45 H ILE 51 B ILE 51 H THR 57 B THR 58 H TYR 59 B TYR 60 H SER 120 B SER 126 H LEU 124 B LEU 130 H ALA 138 B ALA 142 H LYS 145 B LYS 149 H LEU 187 B LEU 184 H VAL 193 B VAL 190 H VAL 171 B VAL 169 H THR 173 B THR 171 H THR 153 B THR 157 H TRP 157 B TRP 160 H TYR 206 B TYR 200 H HIS 212 B HIS 206 H THR 217 B THR 211 H VAL 223 B VAL 217 96 P 43 21 2