0.012240
0.000000
0.000000
0.000000
0.012240
0.000000
0.000000
0.000000
0.006013
0.00000
0.00000
0.00000
Sheriff, S.
Bajorath, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
81.700
81.700
166.300
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O5
164.156
alpha-L-fucopyranose
L-saccharide, alpha linking
C6 H12 O6
180.156
beta-D-galactopyranose
D-saccharide, beta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C10 H20 O2
172.265
METHYL NONANOATE (ESTER)
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
2
466
471
10.1038/nsb0695-466
7664109
The x-ray structure of an anti-tumour antibody in complex with antigen.
1995
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
235
372
Crystallization and Preliminary X-Ray Analysis of the Monoclonal Anti-Tumor Antibody Br96 and its Complex with the Lewis Y Determinant
1994
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
295
1
IMAGE PLATE
1993-07
RIGAKU RAXIS IIC
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER
24077.883
IGG FAB (HUMAN IGG1, KAPPA)
CHIMERIC FRAGMENT (BR96)
1
man
polymer
COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER
23609.449
IGG FAB (HUMAN IGG1, KAPPA)
CHIMERIC FRAGMENT (BR96)
1
man
polymer
675.630
alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
172.265
METHYL NONANOATE (ESTER)
1
syn
non-polymer
CBR96 FAB (IMMUNOGLOBULIN)
CBR96 FAB (IMMUNOGLOBULIN)
Lewis Y antigen, beta anomer
no
no
DVLMTQIPVSLPVSLGDQASISCRSSQIIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQ
SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
DVLMTQIPVSLPVSLGDQASISCRSSQIIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQ
SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
L
polypeptide(L)
no
no
EVNLVESGGGLVQPGGSLKVSCVTSGFTFSDYYMYWVRQTPEKRLEWVAYISQGGDITDYPDTVKGRFTISRDNAKNSLY
LQMSRLKSEDTAMYYCARGLDDGAWFAYWGQGTLVTVSVASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW
NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP
EVNLVESGGGLVQPGGSLKVSCVTSGFTFSDYYMYWVRQTPEKRLEWVAYISQGGDITDYPDTVKGRFTISRDNAKNSLY
LQMSRLKSEDTAMYYCARGLDDGAWFAYWGQGTLVTVSVASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW
NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
HYBRIDOMA PRODUCED BY FUSIONING BALB/C SPLEEN CELLS WITH P2X63-AG 8.653 MOUSE MYELOMA CELLS. HUMAN CONSTANT REGIONS INTRODUCED BY HOMOLOGOUS RECOMBINATION
CH1, IGG1
9606
Homo sapiens
human
Homo
sample
HYBRIDOMA PRODUCED BY FUSIONING BALB/C SPLEEN CELLS WITH P2X63-AG 8.653 MOUSE MYELOMA CELLS. HUMAN CONSTANT REGIONS INTRODUCED BY HOMOLOGOUS RECOMBINATION
CH1, IGG1
9606
Homo sapiens
1
2.8
56.
7.5
pH 7.5
atom_site
chem_comp
entity
entity_name_com
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule_features
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_unobs_or_zero_occ_residues
struct_asym
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Advisory
Atomic model
Data collection
Derived calculations
Other
Structure summary
1
0
1996-08-01
1
1
2008-03-24
1
2
2011-07-13
2
0
2020-07-29
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_database_status.process_site
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
Y
NAG
3
n
A
NAG
1
Y
GAL
2
n
A
GAL
2
Y
FUC
1
n
A
FUC
3
Y
FUC
4
n
A
FUC
4
LFucpa
a-L-fucopyranose
a-L-Fucp
Fuc
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
Y
BNL
1995-03-15
REL
REL
oligosaccharide
LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-ROH
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-2/a3-b1_a4-c1_c2-d1
3
PDB2Glycan
1.1.0
WURCS
[][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-Galp]{[(2+1)][a-L-Fucp]{}}}
3
PDB-CARE
LINUCS
C1
O4
GAL
NAG
2
1
3
O1
HO4
sing
C1
O2
FUC
GAL
3
2
3
O1
HO2
sing
C1
O3
FUC
NAG
4
1
3
O1
HO3
sing
n
n
n
n
NON
METHYL NONANOATE (ESTER)
THE FAB LIGHT CHAIN (RESIDUES 1 - 214) HAS BEEN ASSIGNED
CHAIN INDICATOR L. THE FAB HEAVY CHAIN (RESIDUES 1 - 231)
HAS BEEN ASSIGNED CHAIN INDICATOR H. THE FAB FRAGMENT
IS NUMBERED BY THE CONVENTION OF E. KABAT (E.A. KABAT,
T.T. WU, H.M. PERRY, K.S. GOTTESMAN, C. FOELLER SEQUENCES
OF PROTEINS OF IMMUNOLOGICAL INTEREST, 5TH ED.,
(1991), NATIONAL INSTITUTES OF HEALTH, BETHESDA, MD.).
Antigen
oligosaccharide with branches
Lewis Y antigen, beta anomer
Oligosaccharide
NON
5
4
NON
NON
232
H
n
1
1
L
n
2
2
L
LEU
3
n
3
LEU
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
ILE
7
n
7
ILE
7
L
PRO
8
n
8
PRO
8
L
VAL
9
n
9
VAL
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
PRO
12
n
12
PRO
12
L
VAL
13
n
13
VAL
13
L
SER
14
n
14
SER
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
ASP
17
n
17
ASP
17
L
GLN
18
n
18
GLN
18
L
ALA
19
n
19
ALA
19
L
SER
20
n
20
SER
20
L
ILE
21
n
21
ILE
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
SER
25
n
25
SER
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
ILE
27
n
28
A
ILE
27
L
ILE
27
n
29
B
ILE
27
L
VAL
27
n
30
C
VAL
27
L
HIS
27
n
31
D
HIS
27
L
ASN
27
n
32
E
ASN
27
L
ASN
28
n
33
ASN
28
L
GLY
29
n
34
GLY
29
L
ASN
30
n
35
ASN
30
L
THR
31
n
36
THR
31
L
TYR
32
n
37
TYR
32
L
LEU
33
n
38
LEU
33
L
GLU
34
n
39
GLU
34
L
TRP
35
n
40
TRP
35
L
TYR
36
n
41
TYR
36
L
LEU
37
n
42
LEU
37
L
GLN
38
n
43
GLN
38
L
LYS
39
n
44
LYS
39
L
PRO
40
n
45
PRO
40
L
GLY
41
n
46
GLY
41
L
GLN
42
n
47
GLN
42
L
SER
43
n
48
SER
43
L
PRO
44
n
49
PRO
44
L
GLN
45
n
50
GLN
45
L
LEU
46
n
51
LEU
46
L
LEU
47
n
52
LEU
47
L
ILE
48
n
53
ILE
48
L
TYR
49
n
54
TYR
49
L
LYS
50
n
55
LYS
50
L
VAL
51
n
56
VAL
51
L
SER
52
n
57
SER
52
L
ASN
53
n
58
ASN
53
L
ARG
54
n
59
ARG
54
L
PHE
55
n
60
PHE
55
L
SER
56
n
61
SER
56
L
GLY
57
n
62
GLY
57
L
VAL
58
n
63
VAL
58
L
PRO
59
n
64
PRO
59
L
ASP
60
n
65
ASP
60
L
ARG
61
n
66
ARG
61
L
PHE
62
n
67
PHE
62
L
SER
63
n
68
SER
63
L
GLY
64
n
69
GLY
64
L
SER
65
n
70
SER
65
L
GLY
66
n
71
GLY
66
L
SER
67
n
72
SER
67
L
GLY
68
n
73
GLY
68
L
THR
69
n
74
THR
69
L
ASP
70
n
75
ASP
70
L
PHE
71
n
76
PHE
71
L
THR
72
n
77
THR
72
L
LEU
73
n
78
LEU
73
L
LYS
74
n
79
LYS
74
L
ILE
75
n
80
ILE
75
L
SER
76
n
81
SER
76
L
ARG
77
n
82
ARG
77
L
VAL
78
n
83
VAL
78
L
GLU
79
n
84
GLU
79
L
ALA
80
n
85
ALA
80
L
GLU
81
n
86
GLU
81
L
ASP
82
n
87
ASP
82
L
LEU
83
n
88
LEU
83
L
GLY
84
n
89
GLY
84
L
VAL
85
n
90
VAL
85
L
TYR
86
n
91
TYR
86
L
TYR
87
n
92
TYR
87
L
CYS
88
n
93
CYS
88
L
PHE
89
n
94
PHE
89
L
GLN
90
n
95
GLN
90
L
GLY
91
n
96
GLY
91
L
SER
92
n
97
SER
92
L
HIS
93
n
98
HIS
93
L
VAL
94
n
99
VAL
94
L
PRO
95
n
100
PRO
95
L
PHE
96
n
101
PHE
96
L
THR
97
n
102
THR
97
L
PHE
98
n
103
PHE
98
L
GLY
99
n
104
GLY
99
L
SER
100
n
105
SER
100
L
GLY
101
n
106
GLY
101
L
THR
102
n
107
THR
102
L
LYS
103
n
108
LYS
103
L
LEU
104
n
109
LEU
104
L
GLU
105
n
110
GLU
105
L
ILE
106
n
111
ILE
106
L
LYS
107
n
112
LYS
107
L
ARG
108
n
113
ARG
108
L
THR
109
n
114
THR
109
L
VAL
110
n
115
VAL
110
L
ALA
111
n
116
ALA
111
L
ALA
112
n
117
ALA
112
L
PRO
113
n
118
PRO
113
L
SER
114
n
119
SER
114
L
VAL
115
n
120
VAL
115
L
PHE
116
n
121
PHE
116
L
ILE
117
n
122
ILE
117
L
PHE
118
n
123
PHE
118
L
PRO
119
n
124
PRO
119
L
PRO
120
n
125
PRO
120
L
SER
121
n
126
SER
121
L
ASP
122
n
127
ASP
122
L
GLU
123
n
128
GLU
123
L
GLN
124
n
129
GLN
124
L
LEU
125
n
130
LEU
125
L
LYS
126
n
131
LYS
126
L
SER
127
n
132
SER
127
L
GLY
128
n
133
GLY
128
L
THR
129
n
134
THR
129
L
ALA
130
n
135
ALA
130
L
SER
131
n
136
SER
131
L
VAL
132
n
137
VAL
132
L
VAL
133
n
138
VAL
133
L
CYS
134
n
139
CYS
134
L
LEU
135
n
140
LEU
135
L
LEU
136
n
141
LEU
136
L
ASN
137
n
142
ASN
137
L
ASN
138
n
143
ASN
138
L
PHE
139
n
144
PHE
139
L
TYR
140
n
145
TYR
140
L
PRO
141
n
146
PRO
141
L
ARG
142
n
147
ARG
142
L
GLU
143
n
148
GLU
143
L
ALA
144
n
149
ALA
144
L
LYS
145
n
150
LYS
145
L
VAL
146
n
151
VAL
146
L
GLN
147
n
152
GLN
147
L
TRP
148
n
153
TRP
148
L
LYS
149
n
154
LYS
149
L
VAL
150
n
155
VAL
150
L
ASP
151
n
156
ASP
151
L
ASN
152
n
157
ASN
152
L
ALA
153
n
158
ALA
153
L
LEU
154
n
159
LEU
154
L
GLN
155
n
160
GLN
155
L
SER
156
n
161
SER
156
L
GLY
157
n
162
GLY
157
L
ASN
158
n
163
ASN
158
L
SER
159
n
164
SER
159
L
GLN
160
n
165
GLN
160
L
GLU
161
n
166
GLU
161
L
SER
162
n
167
SER
162
L
VAL
163
n
168
VAL
163
L
THR
164
n
169
THR
164
L
GLU
165
n
170
GLU
165
L
GLN
166
n
171
GLN
166
L
ASP
167
n
172
ASP
167
L
SER
168
n
173
SER
168
L
LYS
169
n
174
LYS
169
L
ASP
170
n
175
ASP
170
L
SER
171
n
176
SER
171
L
THR
172
n
177
THR
172
L
TYR
173
n
178
TYR
173
L
SER
174
n
179
SER
174
L
LEU
175
n
180
LEU
175
L
SER
176
n
181
SER
176
L
SER
177
n
182
SER
177
L
THR
178
n
183
THR
178
L
LEU
179
n
184
LEU
179
L
THR
180
n
185
THR
180
L
LEU
181
n
186
LEU
181
L
SER
182
n
187
SER
182
L
LYS
183
n
188
LYS
183
L
ALA
184
n
189
ALA
184
L
ASP
185
n
190
ASP
185
L
TYR
186
n
191
TYR
186
L
GLU
187
n
192
GLU
187
L
LYS
188
n
193
LYS
188
L
HIS
189
n
194
HIS
189
L
LYS
190
n
195
LYS
190
L
VAL
191
n
196
VAL
191
L
TYR
192
n
197
TYR
192
L
ALA
193
n
198
ALA
193
L
CYS
194
n
199
CYS
194
L
GLU
195
n
200
GLU
195
L
VAL
196
n
201
VAL
196
L
THR
197
n
202
THR
197
L
HIS
198
n
203
HIS
198
L
GLN
199
n
204
GLN
199
L
GLY
200
n
205
GLY
200
L
LEU
201
n
206
LEU
201
L
SER
202
n
207
SER
202
L
SER
203
n
208
SER
203
L
PRO
204
n
209
PRO
204
L
VAL
205
n
210
VAL
205
L
THR
206
n
211
THR
206
L
LYS
207
n
212
LYS
207
L
SER
208
n
213
SER
208
L
PHE
209
n
214
PHE
209
L
ASN
210
n
215
ASN
210
L
ARG
211
n
216
ARG
211
L
GLY
212
n
217
GLY
212
L
GLU
213
n
218
GLU
213
L
CYS
214
n
219
CYS
214
L
GLU
1
n
1
GLU
1
H
VAL
2
n
2
VAL
2
H
ASN
3
n
3
ASN
3
H
LEU
4
n
4
LEU
4
H
VAL
5
n
5
VAL
5
H
GLU
6
n
6
GLU
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
GLY
9
n
9
GLY
9
H
GLY
10
n
10
GLY
10
H
LEU
11
n
11
LEU
11
H
VAL
12
n
12
VAL
12
H
GLN
13
n
13
GLN
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
GLY
16
n
16
GLY
16
H
SER
17
n
17
SER
17
H
LEU
18
n
18
LEU
18
H
LYS
19
n
19
LYS
19
H
VAL
20
n
20
VAL
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
VAL
23
n
23
VAL
23
H
THR
24
n
24
THR
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
PHE
27
n
27
PHE
27
H
THR
28
n
28
THR
28
H
PHE
29
n
29
PHE
29
H
SER
30
n
30
SER
30
H
ASP
31
n
31
ASP
31
H
TYR
32
n
32
TYR
32
H
TYR
33
n
33
TYR
33
H
MET
34
n
34
MET
34
H
TYR
35
n
35
TYR
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
ARG
38
n
38
ARG
38
H
GLN
39
n
39
GLN
39
H
THR
40
n
40
THR
40
H
PRO
41
n
41
PRO
41
H
GLU
42
n
42
GLU
42
H
LYS
43
n
43
LYS
43
H
ARG
44
n
44
ARG
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
VAL
48
n
48
VAL
48
H
ALA
49
n
49
ALA
49
H
TYR
50
n
50
TYR
50
H
ILE
51
n
51
ILE
51
H
SER
52
n
52
SER
52
H
GLN
52
n
53
A
GLN
52
H
GLY
53
n
54
GLY
53
H
GLY
54
n
55
GLY
54
H
ASP
55
n
56
ASP
55
H
ILE
56
n
57
ILE
56
H
THR
57
n
58
THR
57
H
ASP
58
n
59
ASP
58
H
TYR
59
n
60
TYR
59
H
PRO
60
n
61
PRO
60
H
ASP
61
n
62
ASP
61
H
THR
62
n
63
THR
62
H
VAL
63
n
64
VAL
63
H
LYS
64
n
65
LYS
64
H
GLY
65
n
66
GLY
65
H
ARG
66
n
67
ARG
66
H
PHE
67
n
68
PHE
67
H
THR
68
n
69
THR
68
H
ILE
69
n
70
ILE
69
H
SER
70
n
71
SER
70
H
ARG
71
n
72
ARG
71
H
ASP
72
n
73
ASP
72
H
ASN
73
n
74
ASN
73
H
ALA
74
n
75
ALA
74
H
LYS
75
n
76
LYS
75
H
ASN
76
n
77
ASN
76
H
SER
77
n
78
SER
77
H
LEU
78
n
79
LEU
78
H
TYR
79
n
80
TYR
79
H
LEU
80
n
81
LEU
80
H
GLN
81
n
82
GLN
81
H
MET
82
n
83
MET
82
H
SER
82
n
84
A
SER
82
H
ARG
82
n
85
B
ARG
82
H
LEU
82
n
86
C
LEU
82
H
LYS
83
n
87
LYS
83
H
SER
84
n
88
SER
84
H
GLU
85
n
89
GLU
85
H
ASP
86
n
90
ASP
86
H
THR
87
n
91
THR
87
H
ALA
88
n
92
ALA
88
H
MET
89
n
93
MET
89
H
TYR
90
n
94
TYR
90
H
TYR
91
n
95
TYR
91
H
CYS
92
n
96
CYS
92
H
ALA
93
n
97
ALA
93
H
ARG
94
n
98
ARG
94
H
GLY
95
n
99
GLY
95
H
LEU
96
n
100
LEU
96
H
ASP
97
n
101
ASP
97
H
ASP
98
n
102
ASP
98
H
GLY
99
n
103
GLY
99
H
ALA
100
n
104
ALA
100
H
TRP
100
n
105
A
TRP
100
H
PHE
100
n
106
B
PHE
100
H
ALA
101
n
107
ALA
101
H
TYR
102
n
108
TYR
102
H
TRP
103
n
109
TRP
103
H
GLY
104
n
110
GLY
104
H
GLN
105
n
111
GLN
105
H
GLY
106
n
112
GLY
106
H
THR
107
n
113
THR
107
H
LEU
108
n
114
LEU
108
H
VAL
109
n
115
VAL
109
H
THR
110
n
116
THR
110
H
VAL
111
n
117
VAL
111
H
SER
112
n
118
SER
112
H
VAL
113
n
119
VAL
113
H
ALA
114
n
120
ALA
114
H
SER
115
n
121
SER
115
H
THR
116
n
122
THR
116
H
LYS
117
n
123
LYS
117
H
GLY
118
n
124
GLY
118
H
PRO
119
n
125
PRO
119
H
SER
120
n
126
SER
120
H
VAL
121
n
127
VAL
121
H
PHE
122
n
128
PHE
122
H
PRO
123
n
129
PRO
123
H
LEU
124
n
130
LEU
124
H
ALA
125
n
131
ALA
125
H
PRO
126
n
132
PRO
126
H
SER
127
n
133
SER
127
H
SER
128
n
134
SER
128
H
LYS
129
n
135
LYS
129
H
SER
130
n
136
SER
130
H
THR
133
n
137
THR
133
H
SER
134
n
138
SER
134
H
GLY
135
n
139
GLY
135
H
GLY
136
n
140
GLY
136
H
THR
137
n
141
THR
137
H
ALA
138
n
142
ALA
138
H
ALA
139
n
143
ALA
139
H
LEU
140
n
144
LEU
140
H
GLY
141
n
145
GLY
141
H
CYS
142
n
146
CYS
142
H
LEU
143
n
147
LEU
143
H
VAL
144
n
148
VAL
144
H
LYS
145
n
149
LYS
145
H
ASP
146
n
150
ASP
146
H
TYR
147
n
151
TYR
147
H
PHE
148
n
152
PHE
148
H
PRO
149
n
153
PRO
149
H
GLN
150
n
154
GLN
150
H
PRO
151
n
155
PRO
151
H
VAL
152
n
156
VAL
152
H
THR
153
n
157
THR
153
H
VAL
154
n
158
VAL
154
H
SER
156
n
159
SER
156
H
TRP
157
n
160
TRP
157
H
ASN
162
n
161
ASN
162
H
SER
163
n
162
SER
163
H
GLY
164
n
163
GLY
164
H
ALA
165
n
164
ALA
165
H
LEU
166
n
165
LEU
166
H
THR
167
n
166
THR
167
H
SER
168
n
167
SER
168
H
GLY
169
n
168
GLY
169
H
VAL
171
n
169
VAL
171
H
HIS
172
n
170
HIS
172
H
THR
173
n
171
THR
173
H
PHE
174
n
172
PHE
174
H
PRO
175
n
173
PRO
175
H
ALA
176
n
174
ALA
176
H
VAL
177
n
175
VAL
177
H
LEU
178
n
176
LEU
178
H
GLN
179
n
177
GLN
179
H
SER
180
n
178
SER
180
H
SER
182
n
179
SER
182
H
GLY
183
n
180
GLY
183
H
LEU
184
n
181
LEU
184
H
TYR
185
n
182
TYR
185
H
SER
186
n
183
SER
186
H
LEU
187
n
184
LEU
187
H
SER
188
n
185
SER
188
H
SER
189
n
186
SER
189
H
VAL
190
n
187
VAL
190
H
VAL
191
n
188
VAL
191
H
THR
192
n
189
THR
192
H
VAL
193
n
190
VAL
193
H
PRO
194
n
191
PRO
194
H
SER
195
n
192
SER
195
H
SER
196
n
193
SER
196
H
SER
197
n
194
SER
197
H
LEU
198
n
195
LEU
198
H
GLY
199
n
196
GLY
199
H
THR
200
n
197
THR
200
H
GLN
203
n
198
GLN
203
H
THR
205
n
199
THR
205
H
TYR
206
n
200
TYR
206
H
ILE
207
n
201
ILE
207
H
CYS
208
n
202
CYS
208
H
ASN
209
n
203
ASN
209
H
VAL
210
n
204
VAL
210
H
ASN
211
n
205
ASN
211
H
HIS
212
n
206
HIS
212
H
LYS
213
n
207
LYS
213
H
PRO
214
n
208
PRO
214
H
SER
215
n
209
SER
215
H
ASN
216
n
210
ASN
216
H
THR
217
n
211
THR
217
H
LYS
218
n
212
LYS
218
H
VAL
219
n
213
VAL
219
H
ASP
220
n
214
ASP
220
H
LYS
221
n
215
LYS
221
H
ARG
222
n
216
ARG
222
H
VAL
223
n
217
VAL
223
H
GLU
226
n
218
GLU
226
H
PRO
227
n
219
PRO
227
H
author_and_software_defined_assembly
PISA
2
dimeric
5640
-2
18870
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
O
THR
5
A
O
THR
5
L
N
ARG
24
A
N
ARG
24
L
O
ALA
19
A
O
ALA
19
L
N
ILE
75
A
N
ILE
80
L
O
ASP
70
A
O
ASP
75
L
N
SER
67
A
N
SER
72
L
O
LEU
11
A
O
LEU
11
L
N
LYS
103
A
N
LYS
108
L
O
THR
102
A
O
THR
107
L
N
TYR
86
A
N
TYR
91
L
O
VAL
85
A
O
VAL
90
L
N
GLN
38
A
N
GLN
43
L
O
TRP
35
A
O
TRP
40
L
N
ILE
48
A
N
ILE
53
L
O
SER
114
A
O
SER
119
L
N
ASN
137
A
N
ASN
142
L
O
ALA
130
A
O
ALA
135
L
N
LEU
181
A
N
LEU
186
L
O
SER
176
A
O
SER
181
L
N
SER
162
A
N
SER
167
L
O
LYS
145
A
O
LYS
150
L
N
THR
197
A
N
THR
202
L
O
TYR
192
A
O
TYR
197
L
N
PHE
209
A
N
PHE
214
H
O
ASN
3
B
O
ASN
3
H
N
SER
25
B
N
SER
25
H
O
LEU
18
B
O
LEU
18
H
N
MET
82
B
N
MET
83
H
O
SER
77
B
O
SER
78
H
N
ASP
72
B
N
ASP
73
H
O
THR
107
B
O
THR
113
H
N
TYR
90
B
N
TYR
94
H
O
MET
89
B
O
MET
93
H
N
GLN
39
B
N
GLN
39
H
O
MET
34
B
O
MET
34
H
N
ILE
51
B
N
ILE
51
H
O
TYR
50
B
O
TYR
50
H
N
ASP
58
B
N
ASP
59
H
O
SER
120
B
O
SER
126
H
N
LYS
145
B
N
LYS
149
H
O
ALA
138
B
O
ALA
142
H
N
VAL
193
B
N
VAL
190
H
O
VAL
190
B
O
VAL
187
H
N
HIS
172
B
N
HIS
170
H
O
THR
153
B
O
THR
157
H
N
ASN
211
B
N
ASN
205
H
O
TYR
206
B
O
TYR
200
H
N
VAL
223
B
N
VAL
217
1
H
CG
GLU
1
B
CG
GLU
1
1
Y
1
H
CD
GLU
1
B
CD
GLU
1
1
Y
1
H
OE1
GLU
1
B
OE1
GLU
1
1
Y
1
H
OE2
GLU
1
B
OE2
GLU
1
1
Y
1
L
ASP
1
A
ASP
1
1
Y
1
L
VAL
2
A
VAL
2
1
Y
D
1
L
HIS
27
-86.90
-121.07
E
1
L
ASN
27
-86.44
40.63
1
L
ASN
28
58.46
6.76
1
L
ASN
30
73.27
165.54
1
L
VAL
51
67.40
-48.39
1
L
ASP
60
-64.96
2.58
1
L
THR
129
-47.97
106.82
1
L
ASN
138
19.64
82.60
1
L
PRO
141
-65.32
-172.92
1
L
ASP
151
66.78
-71.97
1
L
ASN
152
-159.68
9.30
1
L
ASN
158
-75.42
43.47
1
L
ASP
170
-153.32
8.11
1
L
LYS
183
-25.95
-50.95
1
H
ALA
88
-175.77
-176.43
B
1
H
PHE
100
-112.55
72.79
1
H
SER
128
-162.12
-43.28
1
H
SER
130
-175.60
-22.94
1
H
THR
137
-175.00
138.41
1
H
ASP
146
43.36
98.02
1
H
PHE
148
-173.31
139.61
1
H
ALA
165
-95.66
41.68
1
H
LEU
166
-172.72
82.01
1
H
THR
167
-90.95
-72.35
1
H
GLN
179
-58.74
-179.22
1
H
HIS
212
-117.57
78.38
1
H
PRO
214
-57.33
-7.03
PARHCSDX.PRO (ENGH & HUBE
TOPHCSDX.PRO (ENGH & HUBER)
PARAME_MOD.CHO
TOPH3.CHO
47.7
0.298
0.238
0.238
2.5
8.
1741
17177
10.
91.
1
EX POST FACTO
1.
0.37
2.5
8.
0
3395
58
0
3337
0.009
1.6
27.1
1.3
0.376
0.334
2.61
160
1558
7.5
71.7
2.51
57.8
1CLY
20051
0.0
0.059
1
11.9
3.
91.7
0.305
2.51
2.75
2.0
1
90.8
data collection
R-AXIS
data reduction
R-AXIS
refinement
X-PLOR
data scaling
R-AXIS
IGG FAB (HUMAN IGG1, KAPPA), METHYL NONANOATE (ESTER)
IGG FAB (HUMAN IGG1, KAPPA) CHIMERIC FRAGMENT (CBR96) COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER
1
N
N
2
N
N
3
N
N
4
N
N
L
ALA
80
A
ALA
85
HELX_P
L
ASP
82
A
ASP
87
5
1
3
L
ASP
122
A
ASP
127
HELX_P
L
LEU
125
A
LEU
130
1
2
4
L
LYS
183
A
LYS
188
HELX_P
L
GLU
187
A
GLU
192
1
3
5
H
PHE
29
B
PHE
29
HELX_P
H
ASP
31
B
ASP
31
5
4
3
H
ASP
61
B
ASP
62
HELX_P
H
VAL
63
B
VAL
64
5
5
3
H
ASN
73
B
ASN
74
HELX_P
H
LYS
75
B
LYS
76
5
6
3
H
SER
84
B
SER
88
HELX_P
H
ASP
86
B
ASP
90
5
7
3
H
ASN
162
B
ASN
161
HELX_P
H
GLY
164
B
GLY
163
5
8
3
H
SER
195
B
SER
192
HELX_P
H
SER
197
B
SER
194
5
9
3
H
LYS
213
B
LYS
207
HELX_P
H
SER
215
B
SER
209
5
10
3
disulf
2.030
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
88
A
SG
CYS
93
1_555
disulf
2.027
L
CYS
134
A
SG
CYS
139
1_555
L
CYS
194
A
SG
CYS
199
1_555
disulf
2.029
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
92
B
SG
CYS
96
1_555
disulf
2.019
H
CYS
142
B
SG
CYS
146
1_555
H
CYS
208
B
SG
CYS
202
1_555
covale
1.442
one
H
NON
232
D
C9
NON
1_555
A
NAG
1
C
O1
NAG
1_555
covale
1.399
both
A
NAG
1
C
O4
NAG
1_555
A
GAL
2
C
C1
GAL
1_555
covale
1.414
both
A
NAG
1
C
O3
NAG
1_555
A
FUC
4
C
C1
FUC
1_555
covale
1.390
both
A
GAL
2
C
O2
GAL
1_555
A
FUC
3
C
C1
FUC
1_555
IMMUNOGLOBULIN
IMMUNOGLOBULIN, IMMUNOGLOBULIN C REGION, GLYCOPROTEIN, ANTIB
L
ILE
7
A
ILE
7
1
L
PRO
8
A
PRO
8
-0.28
L
VAL
94
A
VAL
99
1
L
PRO
95
A
PRO
100
0.06
L
TYR
140
A
TYR
145
1
L
PRO
141
A
PRO
146
-0.43
H
PHE
148
B
PHE
152
1
H
PRO
149
B
PRO
153
-0.34
H
GLN
150
B
GLN
154
1
H
PRO
151
B
PRO
155
0.41
1CLY
PDB
1
1CLY
1CLY
PDB
2
1CLY
1
214
1CLY
1
214
1CLY
L
1
1
219
1
227
1CLY
1
227
1CLY
H
2
1
219
4
5
4
3
4
5
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
MET
4
A
MET
4
L
ILE
7
A
ILE
7
L
ALA
19
A
ALA
19
L
SER
25
A
SER
25
L
ASP
70
A
ASP
75
L
ILE
75
A
ILE
80
L
PHE
62
A
PHE
67
L
SER
67
A
SER
72
L
SER
10
A
SER
10
L
SER
14
A
SER
14
L
THR
102
A
THR
107
L
LYS
107
A
LYS
112
L
GLY
84
A
GLY
89
L
GLN
90
A
GLN
95
L
LEU
33
A
LEU
38
L
GLN
38
A
GLN
43
L
GLN
45
A
GLN
50
L
ILE
48
A
ILE
53
L
SER
114
A
SER
119
L
PHE
118
A
PHE
123
L
ALA
130
A
ALA
135
L
ASN
137
A
ASN
142
L
LEU
175
A
LEU
180
L
LEU
181
A
LEU
186
L
SER
159
A
SER
164
L
VAL
163
A
VAL
168
L
ALA
144
A
ALA
149
L
VAL
150
A
VAL
155
L
VAL
191
A
VAL
196
L
HIS
198
A
HIS
203
L
VAL
205
A
VAL
210
L
ASN
210
A
ASN
215
H
ASN
3
B
ASN
3
H
SER
7
B
SER
7
H
SER
17
B
SER
17
H
SER
25
B
SER
25
H
SER
77
B
SER
78
H
SER
82
B
SER
84
A
H
PHE
67
B
PHE
68
H
ASP
72
B
ASP
73
H
THR
107
B
THR
113
H
VAL
109
B
VAL
115
H
ALA
88
B
ALA
92
H
ARG
94
B
ARG
98
H
MET
34
B
MET
34
H
THR
40
B
THR
40
H
LEU
45
B
LEU
45
H
ILE
51
B
ILE
51
H
THR
57
B
THR
58
H
TYR
59
B
TYR
60
H
SER
120
B
SER
126
H
LEU
124
B
LEU
130
H
ALA
138
B
ALA
142
H
LYS
145
B
LYS
149
H
LEU
187
B
LEU
184
H
VAL
193
B
VAL
190
H
VAL
171
B
VAL
169
H
THR
173
B
THR
171
H
THR
153
B
THR
157
H
TRP
157
B
TRP
160
H
TYR
206
B
TYR
200
H
HIS
212
B
HIS
206
H
THR
217
B
THR
211
H
VAL
223
B
VAL
217
96
P 43 21 2