0.014409 0.000000 0.000000 0.000000 0.011779 0.000000 0.000000 0.000000 0.011521 0.00000 0.00000 0.00000 Sheriff, S. Bajorath, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 69.400 84.900 86.800 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O5 164.156 alpha-L-fucopyranose L-saccharide, alpha linking C6 H12 O6 180.156 beta-D-galactopyranose D-saccharide, beta linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C10 H20 O2 172.265 METHYL NONANOATE (ESTER) non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 2 466 471 10.1038/nsb0695-466 7664109 The x-ray structure of an anti-tumour antibody in complex with antigen. 1995 UK J.Mol.Biol. JMOBAK 0070 0022-2836 235 372 Crystallization and Preliminary X-Ray Analysis of the Monoclonal Anti-Tumor Antibody Br96 and its Complex with the Lewis Y Determinant 1994 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295 1 MIRROR (SUPPER 6 CM) AREA DETECTOR 1993-01 SIEMENS-NICOLET X100 M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER 24246.910 IGG FAB (IGG3, KAPPA) FRAGMENT (MBR96) 1 nat polymer COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER 23759.754 IGG FAB (IGG3, KAPPA) FRAGMENT (MBR96) 1 nat polymer 675.630 alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 172.265 METHYL NONANOATE (ESTER) 1 syn non-polymer MBR96 FAB (IMMUNOGLOBULIN) MBR96 FAB (IMMUNOGLOBULIN) Lewis Y antigen, beta anomer no no DVLMTQIPVSLPVSLGDQASISCRSSQIIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC DVLMTQIPVSLPVSLGDQASISCRSSQIIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC L polypeptide(L) no no EVNLVESGGGLVQPGGSLKVSCVTSGFTFSDYYMYWVRQTPEKRLEWVAYISQGGDITDYPDTVKGRFTISRDNAKNSLY LQMSRLKSEDTAMYYCARGLDDGAWFAYWGQGTLVTVSVTTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWN YGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKRIEPR EVNLVESGGGLVQPGGSLKVSCVTSGFTFSDYYMYWVRQTPEKRLEWVAYISQGGDITDYPDTVKGRFTISRDNAKNSLY LQMSRLKSEDTAMYYCARGLDDGAWFAYWGQGTLVTVSVTTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWN YGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKRIEPR H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse HYBRIDIZED WITH P2X63-AG MOUSE Mus sample 10090 Mus musculus BALB/C house mouse HYBRIDIZED WITH P2X63-AG MOUSE Mus sample 10090 Mus musculus BALB/C 1 2.6 52. 7.8 pH 7.8 atom_site chem_comp entity entity_name_com pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_database_status pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_molecule_features pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn struct_ref_seq_dif struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Derived calculations Version format compliance Atomic model Data collection Database references Derived calculations Other Structure summary 1 0 1996-08-01 1 1 2008-03-24 1 2 2011-07-13 2 0 2020-07-29 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_database_status.process_site _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details Y NAG 3 n A NAG 1 Y GAL 2 n A GAL 2 Y FUC 1 n A FUC 3 Y FUC 4 n A FUC 4 LFucpa a-L-fucopyranose a-L-Fucp Fuc DGalpb b-D-galactopyranose b-D-Galp Gal DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Y BNL 1995-03-15 REL REL oligosaccharide LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-ROH 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-2/a3-b1_a4-c1_c2-d1 3 PDB2Glycan 1.1.0 WURCS [][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-Galp]{[(2+1)][a-L-Fucp]{}}} 3 PDB-CARE LINUCS C1 O4 GAL NAG 2 1 3 O1 HO4 sing C1 O2 FUC GAL 3 2 3 O1 HO2 sing C1 O3 FUC NAG 4 1 3 O1 HO3 sing n n n n NON METHYL NONANOATE (ESTER) THE FAB LIGHT CHAIN (RESIDUES 1 - 214) HAS BEEN ASSIGNED CHAIN INDICATOR L. THE FAB HEAVY CHAIN (RESIDUES 1 - 231) HAS BEEN ASSIGNED CHAIN INDICATOR H. THE FAB FRAGMENT IS NUMBERED BY THE CONVENTION OF E. KABAT (E.A. KABAT, T.T. WU, H.M. PERRY, K.S. GOTTESMAN, C. FOELLER SEQUENCES OF PROTEINS OF IMMUNOLOGICAL INTEREST, 5TH ED.,. (1991), NATIONAL INSTITUTES OF HEALTH, BETHESDA, MD.). Antigen oligosaccharide with branches Lewis Y antigen, beta anomer Oligosaccharide NON 5 4 NON NON 236 H ASP 1 n 1 ASP 1 L VAL 2 n 2 VAL 2 L LEU 3 n 3 LEU 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L ILE 7 n 7 ILE 7 L PRO 8 n 8 PRO 8 L VAL 9 n 9 VAL 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L PRO 12 n 12 PRO 12 L VAL 13 n 13 VAL 13 L SER 14 n 14 SER 14 L LEU 15 n 15 LEU 15 L GLY 16 n 16 GLY 16 L ASP 17 n 17 ASP 17 L GLN 18 n 18 GLN 18 L ALA 19 n 19 ALA 19 L SER 20 n 20 SER 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L SER 25 n 25 SER 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L ILE 27 n 28 A ILE 27 L ILE 27 n 29 B ILE 27 L VAL 27 n 30 C VAL 27 L HIS 27 n 31 D HIS 27 L ASN 27 n 32 E ASN 27 L ASN 28 n 33 ASN 28 L GLY 29 n 34 GLY 29 L ASN 30 n 35 ASN 30 L THR 31 n 36 THR 31 L TYR 32 n 37 TYR 32 L LEU 33 n 38 LEU 33 L GLU 34 n 39 GLU 34 L TRP 35 n 40 TRP 35 L TYR 36 n 41 TYR 36 L LEU 37 n 42 LEU 37 L GLN 38 n 43 GLN 38 L LYS 39 n 44 LYS 39 L PRO 40 n 45 PRO 40 L GLY 41 n 46 GLY 41 L GLN 42 n 47 GLN 42 L SER 43 n 48 SER 43 L PRO 44 n 49 PRO 44 L GLN 45 n 50 GLN 45 L LEU 46 n 51 LEU 46 L LEU 47 n 52 LEU 47 L ILE 48 n 53 ILE 48 L TYR 49 n 54 TYR 49 L LYS 50 n 55 LYS 50 L VAL 51 n 56 VAL 51 L SER 52 n 57 SER 52 L ASN 53 n 58 ASN 53 L ARG 54 n 59 ARG 54 L PHE 55 n 60 PHE 55 L SER 56 n 61 SER 56 L GLY 57 n 62 GLY 57 L VAL 58 n 63 VAL 58 L PRO 59 n 64 PRO 59 L ASP 60 n 65 ASP 60 L ARG 61 n 66 ARG 61 L PHE 62 n 67 PHE 62 L SER 63 n 68 SER 63 L GLY 64 n 69 GLY 64 L SER 65 n 70 SER 65 L GLY 66 n 71 GLY 66 L SER 67 n 72 SER 67 L GLY 68 n 73 GLY 68 L THR 69 n 74 THR 69 L ASP 70 n 75 ASP 70 L PHE 71 n 76 PHE 71 L THR 72 n 77 THR 72 L LEU 73 n 78 LEU 73 L LYS 74 n 79 LYS 74 L ILE 75 n 80 ILE 75 L SER 76 n 81 SER 76 L ARG 77 n 82 ARG 77 L VAL 78 n 83 VAL 78 L GLU 79 n 84 GLU 79 L ALA 80 n 85 ALA 80 L GLU 81 n 86 GLU 81 L ASP 82 n 87 ASP 82 L LEU 83 n 88 LEU 83 L GLY 84 n 89 GLY 84 L VAL 85 n 90 VAL 85 L TYR 86 n 91 TYR 86 L TYR 87 n 92 TYR 87 L CYS 88 n 93 CYS 88 L PHE 89 n 94 PHE 89 L GLN 90 n 95 GLN 90 L GLY 91 n 96 GLY 91 L SER 92 n 97 SER 92 L HIS 93 n 98 HIS 93 L VAL 94 n 99 VAL 94 L PRO 95 n 100 PRO 95 L PHE 96 n 101 PHE 96 L THR 97 n 102 THR 97 L PHE 98 n 103 PHE 98 L GLY 99 n 104 GLY 99 L SER 100 n 105 SER 100 L GLY 101 n 106 GLY 101 L THR 102 n 107 THR 102 L LYS 103 n 108 LYS 103 L LEU 104 n 109 LEU 104 L GLU 105 n 110 GLU 105 L ILE 106 n 111 ILE 106 L LYS 107 n 112 LYS 107 L ARG 108 n 113 ARG 108 L ALA 109 n 114 ALA 109 L ASP 110 n 115 ASP 110 L ALA 111 n 116 ALA 111 L ALA 112 n 117 ALA 112 L PRO 113 n 118 PRO 113 L THR 114 n 119 THR 114 L VAL 115 n 120 VAL 115 L SER 116 n 121 SER 116 L ILE 117 n 122 ILE 117 L PHE 118 n 123 PHE 118 L PRO 119 n 124 PRO 119 L PRO 120 n 125 PRO 120 L SER 121 n 126 SER 121 L SER 122 n 127 SER 122 L GLU 123 n 128 GLU 123 L GLN 124 n 129 GLN 124 L LEU 125 n 130 LEU 125 L THR 126 n 131 THR 126 L SER 127 n 132 SER 127 L GLY 128 n 133 GLY 128 L GLY 129 n 134 GLY 129 L ALA 130 n 135 ALA 130 L SER 131 n 136 SER 131 L VAL 132 n 137 VAL 132 L VAL 133 n 138 VAL 133 L CYS 134 n 139 CYS 134 L PHE 135 n 140 PHE 135 L LEU 136 n 141 LEU 136 L ASN 137 n 142 ASN 137 L ASN 138 n 143 ASN 138 L PHE 139 n 144 PHE 139 L TYR 140 n 145 TYR 140 L PRO 141 n 146 PRO 141 L LYS 142 n 147 LYS 142 L ASP 143 n 148 ASP 143 L ILE 144 n 149 ILE 144 L ASN 145 n 150 ASN 145 L VAL 146 n 151 VAL 146 L LYS 147 n 152 LYS 147 L TRP 148 n 153 TRP 148 L LYS 149 n 154 LYS 149 L ILE 150 n 155 ILE 150 L ASP 151 n 156 ASP 151 L GLY 152 n 157 GLY 152 L SER 153 n 158 SER 153 L GLU 154 n 159 GLU 154 L ARG 155 n 160 ARG 155 L GLN 156 n 161 GLN 156 L ASN 157 n 162 ASN 157 L GLY 158 n 163 GLY 158 L VAL 159 n 164 VAL 159 L LEU 160 n 165 LEU 160 L ASN 161 n 166 ASN 161 L SER 162 n 167 SER 162 L TRP 163 n 168 TRP 163 L THR 164 n 169 THR 164 L ASP 165 n 170 ASP 165 L GLN 166 n 171 GLN 166 L ASP 167 n 172 ASP 167 L SER 168 n 173 SER 168 L LYS 169 n 174 LYS 169 L ASP 170 n 175 ASP 170 L SER 171 n 176 SER 171 L THR 172 n 177 THR 172 L TYR 173 n 178 TYR 173 L SER 174 n 179 SER 174 L MET 175 n 180 MET 175 L SER 176 n 181 SER 176 L SER 177 n 182 SER 177 L THR 178 n 183 THR 178 L LEU 179 n 184 LEU 179 L THR 180 n 185 THR 180 L LEU 181 n 186 LEU 181 L THR 182 n 187 THR 182 L LYS 183 n 188 LYS 183 L ASP 184 n 189 ASP 184 L GLU 185 n 190 GLU 185 L TYR 186 n 191 TYR 186 L GLU 187 n 192 GLU 187 L ARG 188 n 193 ARG 188 L HIS 189 n 194 HIS 189 L ASN 190 n 195 ASN 190 L SER 191 n 196 SER 191 L TYR 192 n 197 TYR 192 L THR 193 n 198 THR 193 L CYS 194 n 199 CYS 194 L GLU 195 n 200 GLU 195 L ALA 196 n 201 ALA 196 L THR 197 n 202 THR 197 L HIS 198 n 203 HIS 198 L LYS 199 n 204 LYS 199 L THR 200 n 205 THR 200 L SER 201 n 206 SER 201 L THR 202 n 207 THR 202 L SER 203 n 208 SER 203 L PRO 204 n 209 PRO 204 L ILE 205 n 210 ILE 205 L VAL 206 n 211 VAL 206 L LYS 207 n 212 LYS 207 L SER 208 n 213 SER 208 L PHE 209 n 214 PHE 209 L ASN 210 n 215 ASN 210 L ARG 211 n 216 ARG 211 L ASN 212 n 217 ASN 212 L GLU 213 n 218 GLU 213 L CYS 214 n 219 CYS 214 L GLU 1 n 1 GLU 1 H VAL 2 n 2 VAL 2 H ASN 3 n 3 ASN 3 H LEU 4 n 4 LEU 4 H VAL 5 n 5 VAL 5 H GLU 6 n 6 GLU 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H GLY 9 n 9 GLY 9 H GLY 10 n 10 GLY 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H GLN 13 n 13 GLN 13 H PRO 14 n 14 PRO 14 H GLY 15 n 15 GLY 15 H GLY 16 n 16 GLY 16 H SER 17 n 17 SER 17 H LEU 18 n 18 LEU 18 H LYS 19 n 19 LYS 19 H VAL 20 n 20 VAL 20 H SER 21 n 21 SER 21 H CYS 22 n 22 CYS 22 H VAL 23 n 23 VAL 23 H THR 24 n 24 THR 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H PHE 27 n 27 PHE 27 H THR 28 n 28 THR 28 H PHE 29 n 29 PHE 29 H SER 30 n 30 SER 30 H ASP 31 n 31 ASP 31 H TYR 32 n 32 TYR 32 H TYR 33 n 33 TYR 33 H MET 34 n 34 MET 34 H TYR 35 n 35 TYR 35 H TRP 36 n 36 TRP 36 H VAL 37 n 37 VAL 37 H ARG 38 n 38 ARG 38 H GLN 39 n 39 GLN 39 H THR 40 n 40 THR 40 H PRO 41 n 41 PRO 41 H GLU 42 n 42 GLU 42 H LYS 43 n 43 LYS 43 H ARG 44 n 44 ARG 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TRP 47 n 47 TRP 47 H VAL 48 n 48 VAL 48 H ALA 49 n 49 ALA 49 H TYR 50 n 50 TYR 50 H ILE 51 n 51 ILE 51 H SER 52 n 52 SER 52 H GLN 52 n 53 A GLN 52 H GLY 53 n 54 GLY 53 H GLY 54 n 55 GLY 54 H ASP 55 n 56 ASP 55 H ILE 56 n 57 ILE 56 H THR 57 n 58 THR 57 H ASP 58 n 59 ASP 58 H TYR 59 n 60 TYR 59 H PRO 60 n 61 PRO 60 H ASP 61 n 62 ASP 61 H THR 62 n 63 THR 62 H VAL 63 n 64 VAL 63 H LYS 64 n 65 LYS 64 H GLY 65 n 66 GLY 65 H ARG 66 n 67 ARG 66 H PHE 67 n 68 PHE 67 H THR 68 n 69 THR 68 H ILE 69 n 70 ILE 69 H SER 70 n 71 SER 70 H ARG 71 n 72 ARG 71 H ASP 72 n 73 ASP 72 H ASN 73 n 74 ASN 73 H ALA 74 n 75 ALA 74 H LYS 75 n 76 LYS 75 H ASN 76 n 77 ASN 76 H SER 77 n 78 SER 77 H LEU 78 n 79 LEU 78 H TYR 79 n 80 TYR 79 H LEU 80 n 81 LEU 80 H GLN 81 n 82 GLN 81 H MET 82 n 83 MET 82 H SER 82 n 84 A SER 82 H ARG 82 n 85 B ARG 82 H LEU 82 n 86 C LEU 82 H LYS 83 n 87 LYS 83 H SER 84 n 88 SER 84 H GLU 85 n 89 GLU 85 H ASP 86 n 90 ASP 86 H THR 87 n 91 THR 87 H ALA 88 n 92 ALA 88 H MET 89 n 93 MET 89 H TYR 90 n 94 TYR 90 H TYR 91 n 95 TYR 91 H CYS 92 n 96 CYS 92 H ALA 93 n 97 ALA 93 H ARG 94 n 98 ARG 94 H GLY 95 n 99 GLY 95 H LEU 96 n 100 LEU 96 H ASP 97 n 101 ASP 97 H ASP 98 n 102 ASP 98 H GLY 99 n 103 GLY 99 H ALA 100 n 104 ALA 100 H TRP 100 n 105 A TRP 100 H PHE 100 n 106 B PHE 100 H ALA 101 n 107 ALA 101 H TYR 102 n 108 TYR 102 H TRP 103 n 109 TRP 103 H GLY 104 n 110 GLY 104 H GLN 105 n 111 GLN 105 H GLY 106 n 112 GLY 106 H THR 107 n 113 THR 107 H LEU 108 n 114 LEU 108 H VAL 109 n 115 VAL 109 H THR 110 n 116 THR 110 H VAL 111 n 117 VAL 111 H SER 112 n 118 SER 112 H VAL 113 n 119 VAL 113 H THR 115 n 120 THR 115 H THR 116 n 121 THR 116 H THR 117 n 122 THR 117 H ALA 118 n 123 ALA 118 H PRO 119 n 124 PRO 119 H SER 120 n 125 SER 120 H VAL 121 n 126 VAL 121 H TYR 122 n 127 TYR 122 H PRO 123 n 128 PRO 123 H LEU 124 n 129 LEU 124 H VAL 125 n 130 VAL 125 H PRO 126 n 131 PRO 126 H GLY 127 n 132 GLY 127 H CYS 128 n 133 CYS 128 H SER 129 n 134 SER 129 H ASP 130 n 135 ASP 130 H THR 133 n 136 THR 133 H SER 134 n 137 SER 134 H GLY 135 n 138 GLY 135 H SER 136 n 139 SER 136 H SER 137 n 140 SER 137 H VAL 138 n 141 VAL 138 H THR 139 n 142 THR 139 H LEU 140 n 143 LEU 140 H GLY 141 n 144 GLY 141 H CYS 142 n 145 CYS 142 H LEU 143 n 146 LEU 143 H VAL 144 n 147 VAL 144 H LYS 145 n 148 LYS 145 H GLY 146 n 149 GLY 146 H TYR 147 n 150 TYR 147 H PHE 148 n 151 PHE 148 H PRO 149 n 152 PRO 149 H GLU 150 n 153 GLU 150 H PRO 151 n 154 PRO 151 H VAL 152 n 155 VAL 152 H THR 153 n 156 THR 153 H VAL 154 n 157 VAL 154 H LYS 156 n 158 LYS 156 H TRP 157 n 159 TRP 157 H ASN 162 n 160 ASN 162 H TYR 163 n 161 TYR 163 H GLY 164 n 162 GLY 164 H ALA 165 n 163 ALA 165 H LEU 166 n 164 LEU 166 H SER 167 n 165 SER 167 H SER 168 n 166 SER 168 H GLY 169 n 167 GLY 169 H VAL 171 n 168 VAL 171 H ARG 172 n 169 ARG 172 H THR 173 n 170 THR 173 H VAL 174 n 171 VAL 174 H SER 175 n 172 SER 175 H SER 176 n 173 SER 176 H VAL 177 n 174 VAL 177 H LEU 178 n 175 LEU 178 H GLN 179 n 176 GLN 179 H SER 180 n 177 SER 180 H GLY 183 n 178 GLY 183 H PHE 184 n 179 PHE 184 H TYR 185 n 180 TYR 185 H SER 186 n 181 SER 186 H LEU 187 n 182 LEU 187 H SER 188 n 183 SER 188 H SER 189 n 184 SER 189 H LEU 190 n 185 LEU 190 H VAL 191 n 186 VAL 191 H THR 192 n 187 THR 192 H VAL 193 n 188 VAL 193 H PRO 194 n 189 PRO 194 H SER 195 n 190 SER 195 H SER 196 n 191 SER 196 H THR 198 n 192 THR 198 H TRP 199 n 193 TRP 199 H PRO 200 n 194 PRO 200 H SER 202 n 195 SER 202 H GLN 203 n 196 GLN 203 H THR 204 n 197 THR 204 H VAL 205 n 198 VAL 205 H ILE 206 n 199 ILE 206 H CYS 208 n 200 CYS 208 H ASN 209 n 201 ASN 209 H VAL 210 n 202 VAL 210 H ALA 211 n 203 ALA 211 H HIS 212 n 204 HIS 212 H PRO 213 n 205 PRO 213 H ALA 214 n 206 ALA 214 H SER 215 n 207 SER 215 H LYS 216 n 208 LYS 216 H THR 217 n 209 THR 217 H GLU 218 n 210 GLU 218 H LEU 219 n 211 LEU 219 H ILE 220 n 212 ILE 220 H LYS 221 n 213 LYS 221 H ARG 222 n 214 ARG 222 H ILE 223 n 215 ILE 223 H GLU 229 n 216 GLU 229 H PRO 230 n 217 PRO 230 H ARG 231 n 218 ARG 231 H author_and_software_defined_assembly PQS 2 dimeric software_defined_assembly PISA 2 dimeric 4960 -2 19650 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_654 -x+1,y+1/2,-z-1/2 crystal symmetry operation 69.4000000000 42.4500000000 -43.4000000000 L O THR 5 A O THR 5 L N ARG 24 A N ARG 24 L O ALA 19 A O ALA 19 L N ILE 75 A N ILE 80 L O ASP 70 A O ASP 75 L N SER 67 A N SER 72 L O LEU 11 A O LEU 11 L N LYS 103 A N LYS 108 L O THR 102 A O THR 107 L N TYR 86 A N TYR 91 L O VAL 85 A O VAL 90 L N GLN 38 A N GLN 43 L O TRP 35 A O TRP 40 L N ILE 48 A N ILE 53 L O THR 114 A O THR 119 L N ASN 137 A N ASN 142 L O ALA 130 A O ALA 135 L N LEU 181 A N LEU 186 L O SER 176 A O SER 181 L N SER 162 A N SER 167 L O LYS 147 A O LYS 152 L N GLU 195 A N GLU 200 L O TYR 192 A O TYR 197 L N PHE 209 A N PHE 214 H O ASN 3 B O ASN 3 H N SER 25 B N SER 25 H O LEU 18 B O LEU 18 H N MET 82 B N MET 83 H O SER 77 B O SER 78 H N ASP 72 B N ASP 73 H O GLY 10 B O GLY 10 H N THR 110 B N THR 116 H O MET 89 B O MET 93 H N GLN 39 B N GLN 39 H O MET 34 B O MET 34 H N ILE 51 B N ILE 51 H O TYR 50 B O TYR 50 H N ASP 58 B N ASP 59 H O SER 120 B O SER 125 H N LYS 145 B N LYS 148 H O VAL 138 B O VAL 141 H N VAL 193 B N VAL 188 H O LEU 190 B O LEU 185 H N ARG 172 B N ARG 169 H O THR 153 B O THR 156 H N ALA 211 B N ALA 203 H O VAL 205 B O VAL 198 H N ILE 223 B N ILE 215 H O VAL 177 B O VAL 174 H N SER 186 B N SER 181 1 H CG GLU 1 B CG GLU 1 1 Y 1 H CD GLU 1 B CD GLU 1 1 Y 1 H OE1 GLU 1 B OE1 GLU 1 1 Y 1 H OE2 GLU 1 B OE2 GLU 1 1 Y B 1 L ILE 27 -94.55 -96.60 C 1 L VAL 27 52.14 112.39 D 1 L HIS 27 -85.83 -114.58 1 L ASN 28 64.38 -77.84 1 L ASN 30 57.40 175.39 1 L VAL 51 78.77 -42.77 1 L SER 56 -39.00 122.08 1 L ARG 77 80.13 92.54 1 L GLU 81 -64.18 0.00 1 L ASP 151 71.44 -5.19 1 L LYS 169 -154.49 27.71 1 L ASP 170 -150.67 -25.68 1 L ARG 188 -155.43 -24.88 1 L ARG 211 -50.57 10.55 1 L GLU 213 -126.84 -168.99 1 H PRO 41 -37.44 -25.40 1 H LYS 43 56.99 17.39 1 H VAL 63 -130.49 -30.98 1 H ASN 76 29.76 46.86 1 H ALA 88 -173.00 -179.11 A 1 H TRP 100 -79.36 -79.15 1 H SER 112 177.66 -121.66 1 H THR 115 54.68 155.33 1 H SER 134 -99.43 -154.95 1 H SER 136 79.32 -48.35 1 H PRO 151 -115.60 -168.49 1 H GLN 179 -69.44 -157.18 1 H SER 180 -62.53 79.87 1 H THR 198 -66.08 -85.98 1 H ALA 214 -62.96 11.07 1 H SER 215 -150.22 2.32 PARHCSDX.PRO (ENGH & HUBE TOPHCSDX.PRO (ENGL & HUBER) PARAM3_MOD.CHO TOPH3.CHO 14.9 0.295 0.197 0.197 2.8 8. 969 8858 10. 70. 1 EX POST FACTO 1. 0.30 2.8 8. 0 3431 58 0 3373 0.008 1.6 27.5 1.4 0.312 0.255 2.87 28 237 1.9 18. 2.78 38.1 1CLZ 9937 0.0 0.07 1 12.6 2. 73.9 2.78 2.95 3.8 0.151 1 43.8 data collection XENGEN data reduction XENGEN refinement X-PLOR data scaling XENGEN IGG FAB (IGG3, KAPPA), METHYL NONANOATE (ESTER) IGG FAB (IGG3, KAPPA) FRAGMENT (MBR96) COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER 1 N N 2 N N 3 N N 4 N N L ALA 80 A ALA 85 HELX_P L ASP 82 A ASP 87 5 1 3 L SER 122 A SER 127 HELX_P L THR 126 A THR 131 1 2 5 L LYS 183 A LYS 188 HELX_P L TYR 186 A TYR 191 1 3 4 H PHE 29 B PHE 29 HELX_P H ASP 31 B ASP 31 5 4 3 H SER 84 B SER 88 HELX_P H ASP 86 B ASP 90 5 5 3 H PRO 213 B PRO 205 HELX_P H SER 215 B SER 207 5 6 3 disulf 2.020 L CYS 23 A SG CYS 23 1_555 L CYS 88 A SG CYS 93 1_555 disulf 2.028 L CYS 134 A SG CYS 139 1_555 L CYS 194 A SG CYS 199 1_555 disulf 2.036 H CYS 22 B SG CYS 22 1_555 H CYS 92 B SG CYS 96 1_555 disulf 2.045 H CYS 142 B SG CYS 145 1_555 H CYS 208 B SG CYS 200 1_555 covale 1.439 one H NON 236 D C9 NON 1_555 A NAG 1 C O1 NAG 1_555 covale 1.375 both A NAG 1 C O4 NAG 1_555 A GAL 2 C C1 GAL 1_555 covale 1.409 both A NAG 1 C O3 NAG 1_555 A FUC 4 C C1 FUC 1_555 covale 1.394 both A GAL 2 C O2 GAL 1_555 A FUC 3 C C1 FUC 1_555 IMMUNOGLOBULIN IMMUNOGLOBULIN C REGION, GLYCOPROTEIN, TRANSMEMBRANE, IMMUNOGLOBULIN L ILE 7 A ILE 7 1 L PRO 8 A PRO 8 -0.30 L VAL 94 A VAL 99 1 L PRO 95 A PRO 100 -0.25 L TYR 140 A TYR 145 1 L PRO 141 A PRO 146 -0.09 H PHE 148 B PHE 151 1 H PRO 149 B PRO 152 -0.31 H GLU 150 B GLU 153 1 H PRO 151 B PRO 154 -0.83 H TRP 199 B TRP 193 1 H PRO 200 B PRO 194 0.01 PC4203 PIR 1 1 PC4203 DVLMTQTPLSLPVSLGDQASISCRSSQSIVHTNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYYCFQGSHVPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC GC3_MOUSE UNP 2 1 P22436 TTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVI CNVAHPASKTELIKRIEPRIPKPSTPPGSSCPPGNILGGPSVFIFPPKPKDALMISLTPKVTCVVVDVSEDDPDVHVSWF VDNKEVHTAWTQPREAQYNSTFRVVSALPIQHQDWMRGKEFKCKVNNKALPAPIERTISKPKGRAQTPQVYTIPPPREQM SKKKVSLTCLVTNFFSEAISVEWERNGELEQDYKNTPPILDSDGTYFLYSKLTVDTDSWLQGEIFTCSVVHEALHNHHTQ KNLSRSPGK 1 219 1CLZ 1 214 PC4203 L 1 1 219 1 99 1CLZ 115 231 P22436 H 2 120 218 1 THR conflict ILE 7 1CLZ L PC4203 PIR 7 7 1 LEU conflict VAL 9 1CLZ L PC4203 PIR 9 9 1 SER conflict ILE 27 1CLZ A L PC4203 PIR 28 28 1 THR conflict ASN 27 1CLZ E L PC4203 PIR 32 32 1 LYS conflict GLN 45 1CLZ L PC4203 PIR 50 50 1 ARG conflict PHE 96 1CLZ L PC4203 PIR 101 101 1 GLY conflict SER 100 1CLZ L PC4203 PIR 105 105 4 5 4 3 4 2 4 4 3 2 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L MET 4 A MET 4 L ILE 7 A ILE 7 L ALA 19 A ALA 19 L SER 25 A SER 25 L ASP 70 A ASP 75 L ILE 75 A ILE 80 L PHE 62 A PHE 67 L SER 67 A SER 72 L SER 10 A SER 10 L SER 14 A SER 14 L THR 102 A THR 107 L LYS 107 A LYS 112 L GLY 84 A GLY 89 L GLN 90 A GLN 95 L LEU 33 A LEU 38 L GLN 38 A GLN 43 L PRO 44 A PRO 49 L ILE 48 A ILE 53 L THR 114 A THR 119 L PHE 118 A PHE 123 L GLY 129 A GLY 134 L ASN 137 A ASN 142 L MET 175 A MET 180 L THR 182 A THR 187 L VAL 159 A VAL 164 L TRP 163 A TRP 168 L VAL 146 A VAL 151 L ILE 150 A ILE 155 L SER 191 A SER 196 L ALA 196 A ALA 201 L ILE 205 A ILE 210 L ASN 210 A ASN 215 H ASN 3 B ASN 3 H SER 7 B SER 7 H LEU 18 B LEU 18 H SER 25 B SER 25 H SER 77 B SER 78 H MET 82 B MET 83 H PHE 67 B PHE 68 H ASP 72 B ASP 73 H GLY 10 B GLY 10 H VAL 12 B VAL 12 H VAL 109 B VAL 115 H VAL 111 B VAL 117 H ALA 88 B ALA 92 H ARG 94 B ARG 98 H MET 34 B MET 34 H THR 40 B THR 40 H ARG 44 B ARG 44 H ILE 51 B ILE 51 H THR 57 B THR 58 H TYR 59 B TYR 60 H SER 120 B SER 125 H LEU 124 B LEU 129 H SER 137 B SER 140 H TYR 147 B TYR 150 H TYR 185 B TYR 180 H PRO 194 B PRO 189 H VAL 171 B VAL 168 H THR 173 B THR 170 H VAL 152 B VAL 155 H TRP 157 B TRP 159 H VAL 205 B VAL 198 H HIS 212 B HIS 204 H THR 217 B THR 209 H ILE 223 B ILE 215 H VAL 177 B VAL 174 H GLN 179 B GLN 176 H PHE 184 B PHE 179 H SER 186 B SER 181 19 P 21 21 21