0.014409
0.000000
0.000000
0.000000
0.011779
0.000000
0.000000
0.000000
0.011521
0.00000
0.00000
0.00000
Sheriff, S.
Bajorath, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
69.400
84.900
86.800
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O5
164.156
alpha-L-fucopyranose
L-saccharide, alpha linking
C6 H12 O6
180.156
beta-D-galactopyranose
D-saccharide, beta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C10 H20 O2
172.265
METHYL NONANOATE (ESTER)
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
2
466
471
10.1038/nsb0695-466
7664109
The x-ray structure of an anti-tumour antibody in complex with antigen.
1995
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
235
372
Crystallization and Preliminary X-Ray Analysis of the Monoclonal Anti-Tumor Antibody Br96 and its Complex with the Lewis Y Determinant
1994
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
295
1
MIRROR (SUPPER 6 CM)
AREA DETECTOR
1993-01
SIEMENS-NICOLET X100
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER
24246.910
IGG FAB (IGG3, KAPPA)
FRAGMENT (MBR96)
1
nat
polymer
COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER
23759.754
IGG FAB (IGG3, KAPPA)
FRAGMENT (MBR96)
1
nat
polymer
675.630
alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
172.265
METHYL NONANOATE (ESTER)
1
syn
non-polymer
MBR96 FAB (IMMUNOGLOBULIN)
MBR96 FAB (IMMUNOGLOBULIN)
Lewis Y antigen, beta anomer
no
no
DVLMTQIPVSLPVSLGDQASISCRSSQIIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
DVLMTQIPVSLPVSLGDQASISCRSSQIIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
L
polypeptide(L)
no
no
EVNLVESGGGLVQPGGSLKVSCVTSGFTFSDYYMYWVRQTPEKRLEWVAYISQGGDITDYPDTVKGRFTISRDNAKNSLY
LQMSRLKSEDTAMYYCARGLDDGAWFAYWGQGTLVTVSVTTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWN
YGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKRIEPR
EVNLVESGGGLVQPGGSLKVSCVTSGFTFSDYYMYWVRQTPEKRLEWVAYISQGGDITDYPDTVKGRFTISRDNAKNSLY
LQMSRLKSEDTAMYYCARGLDDGAWFAYWGQGTLVTVSVTTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWN
YGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKRIEPR
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
HYBRIDIZED WITH P2X63-AG MOUSE
Mus
sample
10090
Mus musculus
BALB/C
house mouse
HYBRIDIZED WITH P2X63-AG MOUSE
Mus
sample
10090
Mus musculus
BALB/C
1
2.6
52.
7.8
pH 7.8
atom_site
chem_comp
entity
entity_name_com
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule_features
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Derived calculations
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
Other
Structure summary
1
0
1996-08-01
1
1
2008-03-24
1
2
2011-07-13
2
0
2020-07-29
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_database_status.process_site
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
Y
NAG
3
n
A
NAG
1
Y
GAL
2
n
A
GAL
2
Y
FUC
1
n
A
FUC
3
Y
FUC
4
n
A
FUC
4
LFucpa
a-L-fucopyranose
a-L-Fucp
Fuc
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
Y
BNL
1995-03-15
REL
REL
oligosaccharide
LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-ROH
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-2/a3-b1_a4-c1_c2-d1
3
PDB2Glycan
1.1.0
WURCS
[][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-Galp]{[(2+1)][a-L-Fucp]{}}}
3
PDB-CARE
LINUCS
C1
O4
GAL
NAG
2
1
3
O1
HO4
sing
C1
O2
FUC
GAL
3
2
3
O1
HO2
sing
C1
O3
FUC
NAG
4
1
3
O1
HO3
sing
n
n
n
n
NON
METHYL NONANOATE (ESTER)
THE FAB LIGHT CHAIN (RESIDUES 1 - 214) HAS BEEN ASSIGNED
CHAIN INDICATOR L. THE FAB HEAVY CHAIN (RESIDUES 1 - 231)
HAS BEEN ASSIGNED CHAIN INDICATOR H. THE FAB FRAGMENT
IS NUMBERED BY THE CONVENTION OF E. KABAT (E.A. KABAT,
T.T. WU, H.M. PERRY, K.S. GOTTESMAN, C. FOELLER SEQUENCES
OF PROTEINS OF IMMUNOLOGICAL INTEREST, 5TH ED.,.
(1991), NATIONAL INSTITUTES OF HEALTH, BETHESDA, MD.).
Antigen
oligosaccharide with branches
Lewis Y antigen, beta anomer
Oligosaccharide
NON
5
4
NON
NON
236
H
ASP
1
n
1
ASP
1
L
VAL
2
n
2
VAL
2
L
LEU
3
n
3
LEU
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
ILE
7
n
7
ILE
7
L
PRO
8
n
8
PRO
8
L
VAL
9
n
9
VAL
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
PRO
12
n
12
PRO
12
L
VAL
13
n
13
VAL
13
L
SER
14
n
14
SER
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
ASP
17
n
17
ASP
17
L
GLN
18
n
18
GLN
18
L
ALA
19
n
19
ALA
19
L
SER
20
n
20
SER
20
L
ILE
21
n
21
ILE
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
SER
25
n
25
SER
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
ILE
27
n
28
A
ILE
27
L
ILE
27
n
29
B
ILE
27
L
VAL
27
n
30
C
VAL
27
L
HIS
27
n
31
D
HIS
27
L
ASN
27
n
32
E
ASN
27
L
ASN
28
n
33
ASN
28
L
GLY
29
n
34
GLY
29
L
ASN
30
n
35
ASN
30
L
THR
31
n
36
THR
31
L
TYR
32
n
37
TYR
32
L
LEU
33
n
38
LEU
33
L
GLU
34
n
39
GLU
34
L
TRP
35
n
40
TRP
35
L
TYR
36
n
41
TYR
36
L
LEU
37
n
42
LEU
37
L
GLN
38
n
43
GLN
38
L
LYS
39
n
44
LYS
39
L
PRO
40
n
45
PRO
40
L
GLY
41
n
46
GLY
41
L
GLN
42
n
47
GLN
42
L
SER
43
n
48
SER
43
L
PRO
44
n
49
PRO
44
L
GLN
45
n
50
GLN
45
L
LEU
46
n
51
LEU
46
L
LEU
47
n
52
LEU
47
L
ILE
48
n
53
ILE
48
L
TYR
49
n
54
TYR
49
L
LYS
50
n
55
LYS
50
L
VAL
51
n
56
VAL
51
L
SER
52
n
57
SER
52
L
ASN
53
n
58
ASN
53
L
ARG
54
n
59
ARG
54
L
PHE
55
n
60
PHE
55
L
SER
56
n
61
SER
56
L
GLY
57
n
62
GLY
57
L
VAL
58
n
63
VAL
58
L
PRO
59
n
64
PRO
59
L
ASP
60
n
65
ASP
60
L
ARG
61
n
66
ARG
61
L
PHE
62
n
67
PHE
62
L
SER
63
n
68
SER
63
L
GLY
64
n
69
GLY
64
L
SER
65
n
70
SER
65
L
GLY
66
n
71
GLY
66
L
SER
67
n
72
SER
67
L
GLY
68
n
73
GLY
68
L
THR
69
n
74
THR
69
L
ASP
70
n
75
ASP
70
L
PHE
71
n
76
PHE
71
L
THR
72
n
77
THR
72
L
LEU
73
n
78
LEU
73
L
LYS
74
n
79
LYS
74
L
ILE
75
n
80
ILE
75
L
SER
76
n
81
SER
76
L
ARG
77
n
82
ARG
77
L
VAL
78
n
83
VAL
78
L
GLU
79
n
84
GLU
79
L
ALA
80
n
85
ALA
80
L
GLU
81
n
86
GLU
81
L
ASP
82
n
87
ASP
82
L
LEU
83
n
88
LEU
83
L
GLY
84
n
89
GLY
84
L
VAL
85
n
90
VAL
85
L
TYR
86
n
91
TYR
86
L
TYR
87
n
92
TYR
87
L
CYS
88
n
93
CYS
88
L
PHE
89
n
94
PHE
89
L
GLN
90
n
95
GLN
90
L
GLY
91
n
96
GLY
91
L
SER
92
n
97
SER
92
L
HIS
93
n
98
HIS
93
L
VAL
94
n
99
VAL
94
L
PRO
95
n
100
PRO
95
L
PHE
96
n
101
PHE
96
L
THR
97
n
102
THR
97
L
PHE
98
n
103
PHE
98
L
GLY
99
n
104
GLY
99
L
SER
100
n
105
SER
100
L
GLY
101
n
106
GLY
101
L
THR
102
n
107
THR
102
L
LYS
103
n
108
LYS
103
L
LEU
104
n
109
LEU
104
L
GLU
105
n
110
GLU
105
L
ILE
106
n
111
ILE
106
L
LYS
107
n
112
LYS
107
L
ARG
108
n
113
ARG
108
L
ALA
109
n
114
ALA
109
L
ASP
110
n
115
ASP
110
L
ALA
111
n
116
ALA
111
L
ALA
112
n
117
ALA
112
L
PRO
113
n
118
PRO
113
L
THR
114
n
119
THR
114
L
VAL
115
n
120
VAL
115
L
SER
116
n
121
SER
116
L
ILE
117
n
122
ILE
117
L
PHE
118
n
123
PHE
118
L
PRO
119
n
124
PRO
119
L
PRO
120
n
125
PRO
120
L
SER
121
n
126
SER
121
L
SER
122
n
127
SER
122
L
GLU
123
n
128
GLU
123
L
GLN
124
n
129
GLN
124
L
LEU
125
n
130
LEU
125
L
THR
126
n
131
THR
126
L
SER
127
n
132
SER
127
L
GLY
128
n
133
GLY
128
L
GLY
129
n
134
GLY
129
L
ALA
130
n
135
ALA
130
L
SER
131
n
136
SER
131
L
VAL
132
n
137
VAL
132
L
VAL
133
n
138
VAL
133
L
CYS
134
n
139
CYS
134
L
PHE
135
n
140
PHE
135
L
LEU
136
n
141
LEU
136
L
ASN
137
n
142
ASN
137
L
ASN
138
n
143
ASN
138
L
PHE
139
n
144
PHE
139
L
TYR
140
n
145
TYR
140
L
PRO
141
n
146
PRO
141
L
LYS
142
n
147
LYS
142
L
ASP
143
n
148
ASP
143
L
ILE
144
n
149
ILE
144
L
ASN
145
n
150
ASN
145
L
VAL
146
n
151
VAL
146
L
LYS
147
n
152
LYS
147
L
TRP
148
n
153
TRP
148
L
LYS
149
n
154
LYS
149
L
ILE
150
n
155
ILE
150
L
ASP
151
n
156
ASP
151
L
GLY
152
n
157
GLY
152
L
SER
153
n
158
SER
153
L
GLU
154
n
159
GLU
154
L
ARG
155
n
160
ARG
155
L
GLN
156
n
161
GLN
156
L
ASN
157
n
162
ASN
157
L
GLY
158
n
163
GLY
158
L
VAL
159
n
164
VAL
159
L
LEU
160
n
165
LEU
160
L
ASN
161
n
166
ASN
161
L
SER
162
n
167
SER
162
L
TRP
163
n
168
TRP
163
L
THR
164
n
169
THR
164
L
ASP
165
n
170
ASP
165
L
GLN
166
n
171
GLN
166
L
ASP
167
n
172
ASP
167
L
SER
168
n
173
SER
168
L
LYS
169
n
174
LYS
169
L
ASP
170
n
175
ASP
170
L
SER
171
n
176
SER
171
L
THR
172
n
177
THR
172
L
TYR
173
n
178
TYR
173
L
SER
174
n
179
SER
174
L
MET
175
n
180
MET
175
L
SER
176
n
181
SER
176
L
SER
177
n
182
SER
177
L
THR
178
n
183
THR
178
L
LEU
179
n
184
LEU
179
L
THR
180
n
185
THR
180
L
LEU
181
n
186
LEU
181
L
THR
182
n
187
THR
182
L
LYS
183
n
188
LYS
183
L
ASP
184
n
189
ASP
184
L
GLU
185
n
190
GLU
185
L
TYR
186
n
191
TYR
186
L
GLU
187
n
192
GLU
187
L
ARG
188
n
193
ARG
188
L
HIS
189
n
194
HIS
189
L
ASN
190
n
195
ASN
190
L
SER
191
n
196
SER
191
L
TYR
192
n
197
TYR
192
L
THR
193
n
198
THR
193
L
CYS
194
n
199
CYS
194
L
GLU
195
n
200
GLU
195
L
ALA
196
n
201
ALA
196
L
THR
197
n
202
THR
197
L
HIS
198
n
203
HIS
198
L
LYS
199
n
204
LYS
199
L
THR
200
n
205
THR
200
L
SER
201
n
206
SER
201
L
THR
202
n
207
THR
202
L
SER
203
n
208
SER
203
L
PRO
204
n
209
PRO
204
L
ILE
205
n
210
ILE
205
L
VAL
206
n
211
VAL
206
L
LYS
207
n
212
LYS
207
L
SER
208
n
213
SER
208
L
PHE
209
n
214
PHE
209
L
ASN
210
n
215
ASN
210
L
ARG
211
n
216
ARG
211
L
ASN
212
n
217
ASN
212
L
GLU
213
n
218
GLU
213
L
CYS
214
n
219
CYS
214
L
GLU
1
n
1
GLU
1
H
VAL
2
n
2
VAL
2
H
ASN
3
n
3
ASN
3
H
LEU
4
n
4
LEU
4
H
VAL
5
n
5
VAL
5
H
GLU
6
n
6
GLU
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
GLY
9
n
9
GLY
9
H
GLY
10
n
10
GLY
10
H
LEU
11
n
11
LEU
11
H
VAL
12
n
12
VAL
12
H
GLN
13
n
13
GLN
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
GLY
16
n
16
GLY
16
H
SER
17
n
17
SER
17
H
LEU
18
n
18
LEU
18
H
LYS
19
n
19
LYS
19
H
VAL
20
n
20
VAL
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
VAL
23
n
23
VAL
23
H
THR
24
n
24
THR
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
PHE
27
n
27
PHE
27
H
THR
28
n
28
THR
28
H
PHE
29
n
29
PHE
29
H
SER
30
n
30
SER
30
H
ASP
31
n
31
ASP
31
H
TYR
32
n
32
TYR
32
H
TYR
33
n
33
TYR
33
H
MET
34
n
34
MET
34
H
TYR
35
n
35
TYR
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
ARG
38
n
38
ARG
38
H
GLN
39
n
39
GLN
39
H
THR
40
n
40
THR
40
H
PRO
41
n
41
PRO
41
H
GLU
42
n
42
GLU
42
H
LYS
43
n
43
LYS
43
H
ARG
44
n
44
ARG
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
VAL
48
n
48
VAL
48
H
ALA
49
n
49
ALA
49
H
TYR
50
n
50
TYR
50
H
ILE
51
n
51
ILE
51
H
SER
52
n
52
SER
52
H
GLN
52
n
53
A
GLN
52
H
GLY
53
n
54
GLY
53
H
GLY
54
n
55
GLY
54
H
ASP
55
n
56
ASP
55
H
ILE
56
n
57
ILE
56
H
THR
57
n
58
THR
57
H
ASP
58
n
59
ASP
58
H
TYR
59
n
60
TYR
59
H
PRO
60
n
61
PRO
60
H
ASP
61
n
62
ASP
61
H
THR
62
n
63
THR
62
H
VAL
63
n
64
VAL
63
H
LYS
64
n
65
LYS
64
H
GLY
65
n
66
GLY
65
H
ARG
66
n
67
ARG
66
H
PHE
67
n
68
PHE
67
H
THR
68
n
69
THR
68
H
ILE
69
n
70
ILE
69
H
SER
70
n
71
SER
70
H
ARG
71
n
72
ARG
71
H
ASP
72
n
73
ASP
72
H
ASN
73
n
74
ASN
73
H
ALA
74
n
75
ALA
74
H
LYS
75
n
76
LYS
75
H
ASN
76
n
77
ASN
76
H
SER
77
n
78
SER
77
H
LEU
78
n
79
LEU
78
H
TYR
79
n
80
TYR
79
H
LEU
80
n
81
LEU
80
H
GLN
81
n
82
GLN
81
H
MET
82
n
83
MET
82
H
SER
82
n
84
A
SER
82
H
ARG
82
n
85
B
ARG
82
H
LEU
82
n
86
C
LEU
82
H
LYS
83
n
87
LYS
83
H
SER
84
n
88
SER
84
H
GLU
85
n
89
GLU
85
H
ASP
86
n
90
ASP
86
H
THR
87
n
91
THR
87
H
ALA
88
n
92
ALA
88
H
MET
89
n
93
MET
89
H
TYR
90
n
94
TYR
90
H
TYR
91
n
95
TYR
91
H
CYS
92
n
96
CYS
92
H
ALA
93
n
97
ALA
93
H
ARG
94
n
98
ARG
94
H
GLY
95
n
99
GLY
95
H
LEU
96
n
100
LEU
96
H
ASP
97
n
101
ASP
97
H
ASP
98
n
102
ASP
98
H
GLY
99
n
103
GLY
99
H
ALA
100
n
104
ALA
100
H
TRP
100
n
105
A
TRP
100
H
PHE
100
n
106
B
PHE
100
H
ALA
101
n
107
ALA
101
H
TYR
102
n
108
TYR
102
H
TRP
103
n
109
TRP
103
H
GLY
104
n
110
GLY
104
H
GLN
105
n
111
GLN
105
H
GLY
106
n
112
GLY
106
H
THR
107
n
113
THR
107
H
LEU
108
n
114
LEU
108
H
VAL
109
n
115
VAL
109
H
THR
110
n
116
THR
110
H
VAL
111
n
117
VAL
111
H
SER
112
n
118
SER
112
H
VAL
113
n
119
VAL
113
H
THR
115
n
120
THR
115
H
THR
116
n
121
THR
116
H
THR
117
n
122
THR
117
H
ALA
118
n
123
ALA
118
H
PRO
119
n
124
PRO
119
H
SER
120
n
125
SER
120
H
VAL
121
n
126
VAL
121
H
TYR
122
n
127
TYR
122
H
PRO
123
n
128
PRO
123
H
LEU
124
n
129
LEU
124
H
VAL
125
n
130
VAL
125
H
PRO
126
n
131
PRO
126
H
GLY
127
n
132
GLY
127
H
CYS
128
n
133
CYS
128
H
SER
129
n
134
SER
129
H
ASP
130
n
135
ASP
130
H
THR
133
n
136
THR
133
H
SER
134
n
137
SER
134
H
GLY
135
n
138
GLY
135
H
SER
136
n
139
SER
136
H
SER
137
n
140
SER
137
H
VAL
138
n
141
VAL
138
H
THR
139
n
142
THR
139
H
LEU
140
n
143
LEU
140
H
GLY
141
n
144
GLY
141
H
CYS
142
n
145
CYS
142
H
LEU
143
n
146
LEU
143
H
VAL
144
n
147
VAL
144
H
LYS
145
n
148
LYS
145
H
GLY
146
n
149
GLY
146
H
TYR
147
n
150
TYR
147
H
PHE
148
n
151
PHE
148
H
PRO
149
n
152
PRO
149
H
GLU
150
n
153
GLU
150
H
PRO
151
n
154
PRO
151
H
VAL
152
n
155
VAL
152
H
THR
153
n
156
THR
153
H
VAL
154
n
157
VAL
154
H
LYS
156
n
158
LYS
156
H
TRP
157
n
159
TRP
157
H
ASN
162
n
160
ASN
162
H
TYR
163
n
161
TYR
163
H
GLY
164
n
162
GLY
164
H
ALA
165
n
163
ALA
165
H
LEU
166
n
164
LEU
166
H
SER
167
n
165
SER
167
H
SER
168
n
166
SER
168
H
GLY
169
n
167
GLY
169
H
VAL
171
n
168
VAL
171
H
ARG
172
n
169
ARG
172
H
THR
173
n
170
THR
173
H
VAL
174
n
171
VAL
174
H
SER
175
n
172
SER
175
H
SER
176
n
173
SER
176
H
VAL
177
n
174
VAL
177
H
LEU
178
n
175
LEU
178
H
GLN
179
n
176
GLN
179
H
SER
180
n
177
SER
180
H
GLY
183
n
178
GLY
183
H
PHE
184
n
179
PHE
184
H
TYR
185
n
180
TYR
185
H
SER
186
n
181
SER
186
H
LEU
187
n
182
LEU
187
H
SER
188
n
183
SER
188
H
SER
189
n
184
SER
189
H
LEU
190
n
185
LEU
190
H
VAL
191
n
186
VAL
191
H
THR
192
n
187
THR
192
H
VAL
193
n
188
VAL
193
H
PRO
194
n
189
PRO
194
H
SER
195
n
190
SER
195
H
SER
196
n
191
SER
196
H
THR
198
n
192
THR
198
H
TRP
199
n
193
TRP
199
H
PRO
200
n
194
PRO
200
H
SER
202
n
195
SER
202
H
GLN
203
n
196
GLN
203
H
THR
204
n
197
THR
204
H
VAL
205
n
198
VAL
205
H
ILE
206
n
199
ILE
206
H
CYS
208
n
200
CYS
208
H
ASN
209
n
201
ASN
209
H
VAL
210
n
202
VAL
210
H
ALA
211
n
203
ALA
211
H
HIS
212
n
204
HIS
212
H
PRO
213
n
205
PRO
213
H
ALA
214
n
206
ALA
214
H
SER
215
n
207
SER
215
H
LYS
216
n
208
LYS
216
H
THR
217
n
209
THR
217
H
GLU
218
n
210
GLU
218
H
LEU
219
n
211
LEU
219
H
ILE
220
n
212
ILE
220
H
LYS
221
n
213
LYS
221
H
ARG
222
n
214
ARG
222
H
ILE
223
n
215
ILE
223
H
GLU
229
n
216
GLU
229
H
PRO
230
n
217
PRO
230
H
ARG
231
n
218
ARG
231
H
author_and_software_defined_assembly
PQS
2
dimeric
software_defined_assembly
PISA
2
dimeric
4960
-2
19650
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_654
-x+1,y+1/2,-z-1/2
crystal symmetry operation
69.4000000000
42.4500000000
-43.4000000000
L
O
THR
5
A
O
THR
5
L
N
ARG
24
A
N
ARG
24
L
O
ALA
19
A
O
ALA
19
L
N
ILE
75
A
N
ILE
80
L
O
ASP
70
A
O
ASP
75
L
N
SER
67
A
N
SER
72
L
O
LEU
11
A
O
LEU
11
L
N
LYS
103
A
N
LYS
108
L
O
THR
102
A
O
THR
107
L
N
TYR
86
A
N
TYR
91
L
O
VAL
85
A
O
VAL
90
L
N
GLN
38
A
N
GLN
43
L
O
TRP
35
A
O
TRP
40
L
N
ILE
48
A
N
ILE
53
L
O
THR
114
A
O
THR
119
L
N
ASN
137
A
N
ASN
142
L
O
ALA
130
A
O
ALA
135
L
N
LEU
181
A
N
LEU
186
L
O
SER
176
A
O
SER
181
L
N
SER
162
A
N
SER
167
L
O
LYS
147
A
O
LYS
152
L
N
GLU
195
A
N
GLU
200
L
O
TYR
192
A
O
TYR
197
L
N
PHE
209
A
N
PHE
214
H
O
ASN
3
B
O
ASN
3
H
N
SER
25
B
N
SER
25
H
O
LEU
18
B
O
LEU
18
H
N
MET
82
B
N
MET
83
H
O
SER
77
B
O
SER
78
H
N
ASP
72
B
N
ASP
73
H
O
GLY
10
B
O
GLY
10
H
N
THR
110
B
N
THR
116
H
O
MET
89
B
O
MET
93
H
N
GLN
39
B
N
GLN
39
H
O
MET
34
B
O
MET
34
H
N
ILE
51
B
N
ILE
51
H
O
TYR
50
B
O
TYR
50
H
N
ASP
58
B
N
ASP
59
H
O
SER
120
B
O
SER
125
H
N
LYS
145
B
N
LYS
148
H
O
VAL
138
B
O
VAL
141
H
N
VAL
193
B
N
VAL
188
H
O
LEU
190
B
O
LEU
185
H
N
ARG
172
B
N
ARG
169
H
O
THR
153
B
O
THR
156
H
N
ALA
211
B
N
ALA
203
H
O
VAL
205
B
O
VAL
198
H
N
ILE
223
B
N
ILE
215
H
O
VAL
177
B
O
VAL
174
H
N
SER
186
B
N
SER
181
1
H
CG
GLU
1
B
CG
GLU
1
1
Y
1
H
CD
GLU
1
B
CD
GLU
1
1
Y
1
H
OE1
GLU
1
B
OE1
GLU
1
1
Y
1
H
OE2
GLU
1
B
OE2
GLU
1
1
Y
B
1
L
ILE
27
-94.55
-96.60
C
1
L
VAL
27
52.14
112.39
D
1
L
HIS
27
-85.83
-114.58
1
L
ASN
28
64.38
-77.84
1
L
ASN
30
57.40
175.39
1
L
VAL
51
78.77
-42.77
1
L
SER
56
-39.00
122.08
1
L
ARG
77
80.13
92.54
1
L
GLU
81
-64.18
0.00
1
L
ASP
151
71.44
-5.19
1
L
LYS
169
-154.49
27.71
1
L
ASP
170
-150.67
-25.68
1
L
ARG
188
-155.43
-24.88
1
L
ARG
211
-50.57
10.55
1
L
GLU
213
-126.84
-168.99
1
H
PRO
41
-37.44
-25.40
1
H
LYS
43
56.99
17.39
1
H
VAL
63
-130.49
-30.98
1
H
ASN
76
29.76
46.86
1
H
ALA
88
-173.00
-179.11
A
1
H
TRP
100
-79.36
-79.15
1
H
SER
112
177.66
-121.66
1
H
THR
115
54.68
155.33
1
H
SER
134
-99.43
-154.95
1
H
SER
136
79.32
-48.35
1
H
PRO
151
-115.60
-168.49
1
H
GLN
179
-69.44
-157.18
1
H
SER
180
-62.53
79.87
1
H
THR
198
-66.08
-85.98
1
H
ALA
214
-62.96
11.07
1
H
SER
215
-150.22
2.32
PARHCSDX.PRO (ENGH & HUBE
TOPHCSDX.PRO (ENGL & HUBER)
PARAM3_MOD.CHO
TOPH3.CHO
14.9
0.295
0.197
0.197
2.8
8.
969
8858
10.
70.
1
EX POST FACTO
1.
0.30
2.8
8.
0
3431
58
0
3373
0.008
1.6
27.5
1.4
0.312
0.255
2.87
28
237
1.9
18.
2.78
38.1
1CLZ
9937
0.0
0.07
1
12.6
2.
73.9
2.78
2.95
3.8
0.151
1
43.8
data collection
XENGEN
data reduction
XENGEN
refinement
X-PLOR
data scaling
XENGEN
IGG FAB (IGG3, KAPPA), METHYL NONANOATE (ESTER)
IGG FAB (IGG3, KAPPA) FRAGMENT (MBR96) COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER
1
N
N
2
N
N
3
N
N
4
N
N
L
ALA
80
A
ALA
85
HELX_P
L
ASP
82
A
ASP
87
5
1
3
L
SER
122
A
SER
127
HELX_P
L
THR
126
A
THR
131
1
2
5
L
LYS
183
A
LYS
188
HELX_P
L
TYR
186
A
TYR
191
1
3
4
H
PHE
29
B
PHE
29
HELX_P
H
ASP
31
B
ASP
31
5
4
3
H
SER
84
B
SER
88
HELX_P
H
ASP
86
B
ASP
90
5
5
3
H
PRO
213
B
PRO
205
HELX_P
H
SER
215
B
SER
207
5
6
3
disulf
2.020
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
88
A
SG
CYS
93
1_555
disulf
2.028
L
CYS
134
A
SG
CYS
139
1_555
L
CYS
194
A
SG
CYS
199
1_555
disulf
2.036
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
92
B
SG
CYS
96
1_555
disulf
2.045
H
CYS
142
B
SG
CYS
145
1_555
H
CYS
208
B
SG
CYS
200
1_555
covale
1.439
one
H
NON
236
D
C9
NON
1_555
A
NAG
1
C
O1
NAG
1_555
covale
1.375
both
A
NAG
1
C
O4
NAG
1_555
A
GAL
2
C
C1
GAL
1_555
covale
1.409
both
A
NAG
1
C
O3
NAG
1_555
A
FUC
4
C
C1
FUC
1_555
covale
1.394
both
A
GAL
2
C
O2
GAL
1_555
A
FUC
3
C
C1
FUC
1_555
IMMUNOGLOBULIN
IMMUNOGLOBULIN C REGION, GLYCOPROTEIN, TRANSMEMBRANE, IMMUNOGLOBULIN
L
ILE
7
A
ILE
7
1
L
PRO
8
A
PRO
8
-0.30
L
VAL
94
A
VAL
99
1
L
PRO
95
A
PRO
100
-0.25
L
TYR
140
A
TYR
145
1
L
PRO
141
A
PRO
146
-0.09
H
PHE
148
B
PHE
151
1
H
PRO
149
B
PRO
152
-0.31
H
GLU
150
B
GLU
153
1
H
PRO
151
B
PRO
154
-0.83
H
TRP
199
B
TRP
193
1
H
PRO
200
B
PRO
194
0.01
PC4203
PIR
1
1
PC4203
DVLMTQTPLSLPVSLGDQASISCRSSQSIVHTNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYYCFQGSHVPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
GC3_MOUSE
UNP
2
1
P22436
TTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVI
CNVAHPASKTELIKRIEPRIPKPSTPPGSSCPPGNILGGPSVFIFPPKPKDALMISLTPKVTCVVVDVSEDDPDVHVSWF
VDNKEVHTAWTQPREAQYNSTFRVVSALPIQHQDWMRGKEFKCKVNNKALPAPIERTISKPKGRAQTPQVYTIPPPREQM
SKKKVSLTCLVTNFFSEAISVEWERNGELEQDYKNTPPILDSDGTYFLYSKLTVDTDSWLQGEIFTCSVVHEALHNHHTQ
KNLSRSPGK
1
219
1CLZ
1
214
PC4203
L
1
1
219
1
99
1CLZ
115
231
P22436
H
2
120
218
1
THR
conflict
ILE
7
1CLZ
L
PC4203
PIR
7
7
1
LEU
conflict
VAL
9
1CLZ
L
PC4203
PIR
9
9
1
SER
conflict
ILE
27
1CLZ
A
L
PC4203
PIR
28
28
1
THR
conflict
ASN
27
1CLZ
E
L
PC4203
PIR
32
32
1
LYS
conflict
GLN
45
1CLZ
L
PC4203
PIR
50
50
1
ARG
conflict
PHE
96
1CLZ
L
PC4203
PIR
101
101
1
GLY
conflict
SER
100
1CLZ
L
PC4203
PIR
105
105
4
5
4
3
4
2
4
4
3
2
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
MET
4
A
MET
4
L
ILE
7
A
ILE
7
L
ALA
19
A
ALA
19
L
SER
25
A
SER
25
L
ASP
70
A
ASP
75
L
ILE
75
A
ILE
80
L
PHE
62
A
PHE
67
L
SER
67
A
SER
72
L
SER
10
A
SER
10
L
SER
14
A
SER
14
L
THR
102
A
THR
107
L
LYS
107
A
LYS
112
L
GLY
84
A
GLY
89
L
GLN
90
A
GLN
95
L
LEU
33
A
LEU
38
L
GLN
38
A
GLN
43
L
PRO
44
A
PRO
49
L
ILE
48
A
ILE
53
L
THR
114
A
THR
119
L
PHE
118
A
PHE
123
L
GLY
129
A
GLY
134
L
ASN
137
A
ASN
142
L
MET
175
A
MET
180
L
THR
182
A
THR
187
L
VAL
159
A
VAL
164
L
TRP
163
A
TRP
168
L
VAL
146
A
VAL
151
L
ILE
150
A
ILE
155
L
SER
191
A
SER
196
L
ALA
196
A
ALA
201
L
ILE
205
A
ILE
210
L
ASN
210
A
ASN
215
H
ASN
3
B
ASN
3
H
SER
7
B
SER
7
H
LEU
18
B
LEU
18
H
SER
25
B
SER
25
H
SER
77
B
SER
78
H
MET
82
B
MET
83
H
PHE
67
B
PHE
68
H
ASP
72
B
ASP
73
H
GLY
10
B
GLY
10
H
VAL
12
B
VAL
12
H
VAL
109
B
VAL
115
H
VAL
111
B
VAL
117
H
ALA
88
B
ALA
92
H
ARG
94
B
ARG
98
H
MET
34
B
MET
34
H
THR
40
B
THR
40
H
ARG
44
B
ARG
44
H
ILE
51
B
ILE
51
H
THR
57
B
THR
58
H
TYR
59
B
TYR
60
H
SER
120
B
SER
125
H
LEU
124
B
LEU
129
H
SER
137
B
SER
140
H
TYR
147
B
TYR
150
H
TYR
185
B
TYR
180
H
PRO
194
B
PRO
189
H
VAL
171
B
VAL
168
H
THR
173
B
THR
170
H
VAL
152
B
VAL
155
H
TRP
157
B
TRP
159
H
VAL
205
B
VAL
198
H
HIS
212
B
HIS
204
H
THR
217
B
THR
209
H
ILE
223
B
ILE
215
H
VAL
177
B
VAL
174
H
GLN
179
B
GLN
176
H
PHE
184
B
PHE
179
H
SER
186
B
SER
181
19
P 21 21 21