0.013135
0.007584
0.000000
0.000000
0.015167
0.000000
0.000000
0.000000
0.024752
0.00000
0.00000
0.00000
Miki, K.
Sogabe, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
76.130
76.130
40.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H34 Fe N4 O4
618.503
HEME C
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
FE
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
C
Y
142
N
N
Y
143
N
C
Y
144
N
C
Y
145
N
C
Y
146
N
C
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
Y
153
N
N
Y
154
N
C
Y
155
N
C
Y
156
N
C
Y
157
N
C
N
158
N
C
N
159
N
C
N
160
N
C
Y
161
N
N
Y
162
N
C
Y
163
N
C
Y
164
N
C
Y
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
Y
169
N
N
Y
170
N
C
Y
171
N
C
Y
172
N
C
Y
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
N
C
Y
219
N
C
Y
220
N
N
Y
221
N
C
Y
222
N
C
Y
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
S
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
N
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
C
N
313
N
S
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
N
372
N
O
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
R
C
N
386
N
O
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
N
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
N
436
N
O
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
N
N
450
S
C
N
451
N
C
N
452
N
O
N
453
N
C
N
454
N
C
N
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
Y
145
N
sing
Y
146
N
sing
Y
147
N
sing
Y
148
N
doub
N
149
N
sing
Y
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
sing
Y
166
N
doub
Y
167
N
sing
N
168
N
sing
Y
169
N
sing
N
170
E
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
Y
182
N
sing
N
183
N
sing
Y
184
N
sing
N
185
E
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
Y
194
N
sing
Y
195
N
sing
Y
196
N
doub
Y
197
N
sing
N
198
N
sing
Y
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
Y
224
N
sing
Y
225
N
doub
Y
226
N
doub
N
227
N
sing
Y
228
N
sing
N
229
N
sing
Y
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
doub
Y
406
N
sing
Y
407
N
sing
N
408
N
sing
Y
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
Y
429
N
doub
Y
430
N
sing
Y
431
N
sing
N
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
doub
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
252
235
246
10.1006/jmbi.1995.0491
7674304
Refined crystal structure of ferrocytochrome c2 from Rhodopseudomonas viridis at 1.6 A resolution.
1995
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
50
271
10.1107/S0907444993013952
Application of Automatic Molecular-Replacement Procedure to Crystal Structure Analysis of Cytochrrome c2 from Rhodopseudomonas Viridis
1994
NE
FEBS Lett.
FEBLAL
0165
0014-5793
345
5
10.1016/0014-5793(94)00389-0
Structure Similarity of Cytochrrome c2 from Rhodopseudomonas Viridis to Mitochondrial Cytochrome C Revealed by its Crystal Structure at 2.7 A Resokution
1994
10.2210/pdb1co6/pdb
pdb_00001co6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
291
1
DIFFRACTOMETER
1994-07-15
WEISSENBERG
SI(111)
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
BL-6A
Photon Factory
1.00
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
11667.220
PROTEIN (CYTOCHROME C2)
1
nat
polymer
618.503
HEME C
1
syn
non-polymer
18.015
water
145
nat
water
no
no
QDAASGEQVFKQCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKMI
FAGVKDEQKVSDLIAYIKQFNADGSKK
QDAASGEQVFKQCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKMI
FAGVKDEQKVSDLIAYIKQFNADGSKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Blastochloris
sample
1079
Blastochloris viridis
1
2.37
57.52
VAPOR DIFFUSION, HANGING DROP
8.5
CRYSTALS WERE GROWN FROM AN AMMONIUM SULFATE SOLUTION AT PH 8.5, VAPOR DIFFUSION, HANGING DROP
software
atom_site
chem_comp
entity
pdbx_distant_solvent_atoms
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Advisory
Atomic model
Data collection
Derived calculations
Non-polymer description
Structure summary
Data collection
Database references
Refinement description
1
0
1999-06-18
1
1
2008-04-26
1
2
2011-07-13
1
3
2017-10-04
2
0
2021-03-03
2
1
2023-08-09
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.name
_chem_comp.pdbx_synonyms
_entity.formula_weight
_entity.pdbx_description
_pdbx_entity_nonpoly.comp_id
_pdbx_entity_nonpoly.name
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
RCSB
1999-06-05
REL
REL
1
A
O
HOH
218
5.90
1
A
O
HOH
240
7.42
HEC
HEME C
HOH
water
5CYT
PDB
experimental model
HEM
108
2
HEC
HEC
108
A
HOH
109
3
HOH
HOH
109
A
HOH
110
3
HOH
HOH
110
A
HOH
111
3
HOH
HOH
111
A
HOH
112
3
HOH
HOH
112
A
HOH
113
3
HOH
HOH
113
A
HOH
114
3
HOH
HOH
114
A
HOH
115
3
HOH
HOH
115
A
HOH
116
3
HOH
HOH
116
A
HOH
117
3
HOH
HOH
117
A
HOH
118
3
HOH
HOH
118
A
HOH
119
3
HOH
HOH
119
A
HOH
120
3
HOH
HOH
120
A
HOH
121
3
HOH
HOH
121
A
HOH
122
3
HOH
HOH
122
A
HOH
123
3
HOH
HOH
123
A
HOH
124
3
HOH
HOH
124
A
HOH
125
3
HOH
HOH
125
A
HOH
126
3
HOH
HOH
126
A
HOH
127
3
HOH
HOH
127
A
HOH
128
3
HOH
HOH
128
A
HOH
129
3
HOH
HOH
129
A
HOH
130
3
HOH
HOH
130
A
HOH
131
3
HOH
HOH
131
A
HOH
132
3
HOH
HOH
132
A
HOH
133
3
HOH
HOH
133
A
HOH
134
3
HOH
HOH
134
A
HOH
135
3
HOH
HOH
135
A
HOH
136
3
HOH
HOH
136
A
HOH
137
3
HOH
HOH
137
A
HOH
138
3
HOH
HOH
138
A
HOH
139
3
HOH
HOH
139
A
HOH
140
3
HOH
HOH
140
A
HOH
141
3
HOH
HOH
141
A
HOH
142
3
HOH
HOH
142
A
HOH
143
3
HOH
HOH
143
A
HOH
144
3
HOH
HOH
144
A
HOH
145
3
HOH
HOH
145
A
HOH
146
3
HOH
HOH
146
A
HOH
147
3
HOH
HOH
147
A
HOH
148
3
HOH
HOH
148
A
HOH
149
3
HOH
HOH
149
A
HOH
150
3
HOH
HOH
150
A
HOH
151
3
HOH
HOH
151
A
HOH
152
3
HOH
HOH
152
A
HOH
153
3
HOH
HOH
153
A
HOH
154
3
HOH
HOH
154
A
HOH
155
3
HOH
HOH
155
A
HOH
156
3
HOH
HOH
156
A
HOH
157
3
HOH
HOH
157
A
HOH
158
3
HOH
HOH
158
A
HOH
159
3
HOH
HOH
159
A
HOH
160
3
HOH
HOH
160
A
HOH
161
3
HOH
HOH
161
A
HOH
162
3
HOH
HOH
162
A
HOH
163
3
HOH
HOH
163
A
HOH
164
3
HOH
HOH
164
A
HOH
165
3
HOH
HOH
165
A
HOH
166
3
HOH
HOH
166
A
HOH
167
3
HOH
HOH
167
A
HOH
168
3
HOH
HOH
168
A
HOH
169
3
HOH
HOH
169
A
HOH
170
3
HOH
HOH
170
A
HOH
171
3
HOH
HOH
171
A
HOH
172
3
HOH
HOH
172
A
HOH
173
3
HOH
HOH
173
A
HOH
174
3
HOH
HOH
174
A
HOH
175
3
HOH
HOH
175
A
HOH
176
3
HOH
HOH
176
A
HOH
177
3
HOH
HOH
177
A
HOH
178
3
HOH
HOH
178
A
HOH
179
3
HOH
HOH
179
A
HOH
180
3
HOH
HOH
180
A
HOH
182
3
HOH
HOH
182
A
HOH
183
3
HOH
HOH
183
A
HOH
184
3
HOH
HOH
184
A
HOH
185
3
HOH
HOH
185
A
HOH
186
3
HOH
HOH
186
A
HOH
187
3
HOH
HOH
187
A
HOH
188
3
HOH
HOH
188
A
HOH
189
3
HOH
HOH
189
A
HOH
190
3
HOH
HOH
190
A
HOH
191
3
HOH
HOH
191
A
HOH
192
3
HOH
HOH
192
A
HOH
193
3
HOH
HOH
193
A
HOH
194
3
HOH
HOH
194
A
HOH
195
3
HOH
HOH
195
A
HOH
196
3
HOH
HOH
196
A
HOH
197
3
HOH
HOH
197
A
HOH
198
3
HOH
HOH
198
A
HOH
199
3
HOH
HOH
199
A
HOH
200
3
HOH
HOH
200
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
207
3
HOH
HOH
207
A
HOH
208
3
HOH
HOH
208
A
HOH
209
3
HOH
HOH
209
A
HOH
210
3
HOH
HOH
210
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
213
3
HOH
HOH
213
A
HOH
214
3
HOH
HOH
214
A
HOH
215
3
HOH
HOH
215
A
HOH
216
3
HOH
HOH
216
A
HOH
217
3
HOH
HOH
217
A
HOH
218
3
HOH
HOH
218
A
HOH
219
3
HOH
HOH
219
A
HOH
220
3
HOH
HOH
220
A
HOH
221
3
HOH
HOH
221
A
HOH
222
3
HOH
HOH
222
A
HOH
223
3
HOH
HOH
223
A
HOH
224
3
HOH
HOH
224
A
HOH
225
3
HOH
HOH
225
A
HOH
226
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
228
3
HOH
HOH
228
A
HOH
229
3
HOH
HOH
229
A
HOH
230
3
HOH
HOH
230
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
235
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
238
3
HOH
HOH
238
A
HOH
239
3
HOH
HOH
239
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
243
3
HOH
HOH
243
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
252
3
HOH
HOH
252
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
GLN
1
n
1
GLN
1
A
ASP
2
n
2
ASP
2
A
ALA
3
n
3
ALA
3
A
ALA
4
n
4
ALA
4
A
SER
5
n
5
SER
5
A
GLY
6
n
6
GLY
6
A
GLU
7
n
7
GLU
7
A
GLN
8
n
8
GLN
8
A
VAL
9
n
9
VAL
9
A
PHE
10
n
10
PHE
10
A
LYS
11
n
11
LYS
11
A
GLN
12
n
12
GLN
12
A
CYS
13
n
13
CYS
13
A
LEU
14
n
14
LEU
14
A
VAL
15
n
15
VAL
15
A
CYS
16
n
16
CYS
16
A
HIS
17
n
17
HIS
17
A
SER
18
n
18
SER
18
A
ILE
19
n
19
ILE
19
A
GLY
20
n
20
GLY
20
A
PRO
21
n
21
PRO
21
A
GLY
22
n
22
GLY
22
A
ALA
23
n
23
ALA
23
A
LYS
24
n
24
LYS
24
A
ASN
25
n
25
ASN
25
A
LYS
26
n
26
LYS
26
A
VAL
27
n
27
VAL
27
A
GLY
28
n
28
GLY
28
A
PRO
29
n
29
PRO
29
A
VAL
30
n
30
VAL
30
A
LEU
31
n
31
LEU
31
A
ASN
32
n
32
ASN
32
A
GLY
33
n
33
GLY
33
A
LEU
34
n
34
LEU
34
A
PHE
35
n
35
PHE
35
A
GLY
36
n
36
GLY
36
A
ARG
37
n
37
ARG
37
A
HIS
38
n
38
HIS
38
A
SER
39
n
39
SER
39
A
GLY
40
n
40
GLY
40
A
THR
41
n
41
THR
41
A
ILE
42
n
42
ILE
42
A
GLU
43
n
43
GLU
43
A
GLY
44
n
44
GLY
44
A
PHE
45
n
45
PHE
45
A
ALA
46
n
46
ALA
46
A
TYR
47
n
47
TYR
47
A
SER
48
n
48
SER
48
A
ASP
49
n
49
ASP
49
A
ALA
50
n
50
ALA
50
A
ASN
51
n
51
ASN
51
A
LYS
52
n
52
LYS
52
A
ASN
53
n
53
ASN
53
A
SER
54
n
54
SER
54
A
GLY
55
n
55
GLY
55
A
ILE
56
n
56
ILE
56
A
THR
57
n
57
THR
57
A
TRP
58
n
58
TRP
58
A
THR
59
n
59
THR
59
A
GLU
60
n
60
GLU
60
A
GLU
61
n
61
GLU
61
A
VAL
62
n
62
VAL
62
A
PHE
63
n
63
PHE
63
A
ARG
64
n
64
ARG
64
A
GLU
65
n
65
GLU
65
A
TYR
66
n
66
TYR
66
A
ILE
67
n
67
ILE
67
A
ARG
68
n
68
ARG
68
A
ASP
69
n
69
ASP
69
A
PRO
70
n
70
PRO
70
A
LYS
71
n
71
LYS
71
A
ALA
72
n
72
ALA
72
A
LYS
73
n
73
LYS
73
A
ILE
74
n
74
ILE
74
A
PRO
75
n
75
PRO
75
A
GLY
76
n
76
GLY
76
A
THR
77
n
77
THR
77
A
LYS
78
n
78
LYS
78
A
MET
79
n
79
MET
79
A
ILE
80
n
80
ILE
80
A
PHE
81
n
81
PHE
81
A
ALA
82
n
82
ALA
82
A
GLY
83
n
83
GLY
83
A
VAL
84
n
84
VAL
84
A
LYS
85
n
85
LYS
85
A
ASP
86
n
86
ASP
86
A
GLU
87
n
87
GLU
87
A
GLN
88
n
88
GLN
88
A
LYS
89
n
89
LYS
89
A
VAL
90
n
90
VAL
90
A
SER
91
n
91
SER
91
A
ASP
92
n
92
ASP
92
A
LEU
93
n
93
LEU
93
A
ILE
94
n
94
ILE
94
A
ALA
95
n
95
ALA
95
A
TYR
96
n
96
TYR
96
A
ILE
97
n
97
ILE
97
A
LYS
98
n
98
LYS
98
A
GLN
99
n
99
GLN
99
A
PHE
100
n
100
PHE
100
A
ASN
101
n
101
ASN
101
A
ALA
102
n
102
ALA
102
A
ASP
103
n
103
ASP
103
A
GLY
104
n
104
GLY
104
A
SER
105
n
105
SER
105
A
LYS
106
n
106
LYS
106
A
LYS
107
n
107
LYS
107
A
author_defined_assembly
1
monomeric
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
NA
HEC
1_555
87.0
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
NB
HEC
1_555
89.3
A
HEC
108
B
NA
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
NB
HEC
1_555
89.9
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
NC
HEC
1_555
90.2
A
HEC
108
B
NA
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
NC
HEC
1_555
177.1
A
HEC
108
B
NB
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
NC
HEC
1_555
89.3
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
ND
HEC
1_555
86.5
A
HEC
108
B
NA
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
ND
HEC
1_555
91.3
A
HEC
108
B
NB
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
ND
HEC
1_555
175.5
A
HEC
108
B
NC
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
ND
HEC
1_555
89.3
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
108
B
FE
HEC
1_555
A
MET
79
A
SD
MET
79
1_555
172.4
A
HEC
108
B
NA
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
MET
79
A
SD
MET
79
1_555
87.3
A
HEC
108
B
NB
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
MET
79
A
SD
MET
79
1_555
95.8
A
HEC
108
B
NC
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
MET
79
A
SD
MET
79
1_555
95.5
A
HEC
108
B
ND
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
MET
79
A
SD
MET
79
1_555
88.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
19.14
2.70
114.20
133.34
A
A
A
CB
CG
CD
GLU
GLU
GLU
43
43
43
N
1
13.66
2.00
118.30
131.96
A
A
A
CG
CD
OE1
GLU
GLU
GLU
43
43
43
N
1
5.67
0.90
118.30
123.97
A
A
A
CB
CG
OD1
ASP
ASP
ASP
49
49
49
N
1
16.60
2.20
113.40
130.00
A
A
A
CA
CB
CG
GLU
GLU
GLU
61
61
61
N
1
6.56
0.50
120.30
126.86
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
64
64
64
N
1
-5.08
0.50
120.30
115.22
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
64
64
64
N
1
7.58
0.90
118.30
125.88
A
A
A
CB
CG
OD2
ASP
ASP
ASP
69
69
69
N
1
14.25
2.20
113.40
127.65
A
A
A
CA
CB
CG
LYS
LYS
LYS
78
78
78
N
1
5.68
0.90
118.30
123.98
A
A
A
CB
CG
OD1
ASP
ASP
ASP
86
86
86
N
1
-6.47
0.90
118.30
111.83
A
A
A
CB
CG
OD2
ASP
ASP
ASP
86
86
86
N
1
6.71
0.90
118.30
125.01
A
A
A
CB
CG
OD1
ASP
ASP
ASP
103
103
103
N
1
A
A
CB
O
SER
HOH
91
221
0.45
1_555
5_555
1
A
A
CA
O
SER
HOH
91
221
1.47
1_555
5_555
1
A
A
OG
O
SER
HOH
91
221
1.87
1_555
5_555
1
A
A
O
O
HOH
HOH
140
166
2.05
1_555
5_555
1
A
LYS
26
-126.86
-132.65
1
A
ASP
69
-163.15
85.53
INITIAL REFINEMENT WITH X-PLOR 3.1
0.1820000
1.6
6.0
15014
85.2
1
1.0
MOLECULAR REPLACEMENT
5CYT
1.6
6.0
145
1009
43
0
821
0.015
0.020
0.037
0.037
0.044
0.050
1.131
1.500
1.696
2.000
2.267
2.000
3.481
2.500
0.014
0.200
0.141
0.150
0.176
0.300
0.226
0.300
0.223
0.300
2.4
3.0
18.9
15.0
15
20
1.6
20.0
1CO6
16166
1
0.0720000
1
1.
89.1
phasing
PHASER
refinement
PROLSQ
data reduction
WEIS
data scaling
PROTEIN
CRYSTAL STRUCTURE OF FERROCYTOCHROME C2 FROM RHODOPSEUDOMONAS VIRIDIS
1
N
N
2
N
N
3
N
N
A
ASP
2
A
ASP
2
HELX_P
A
PHE
10
A
PHE
10
1
A
9
A
PHE
10
A
PHE
10
HELX_P
A
LEU
14
A
LEU
14
1
B
5
A
SER
48
A
SER
48
HELX_P
A
ASN
53
A
ASN
53
1
C
6
A
THR
59
A
THR
59
HELX_P
A
ASP
69
A
ASP
69
1
D
11
A
ASP
69
A
ASP
69
HELX_P
A
ILE
74
A
ILE
74
1
E
6
covale
1.875
none
A
CYS
13
A
SG
CYS
13
1_555
A
HEC
108
B
CAB
HEC
1_555
covale
2.008
none
A
CYS
16
A
SG
CYS
16
1_555
A
HEC
108
B
CAC
HEC
1_555
metalc
1.974
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
108
B
FE
HEC
1_555
metalc
2.286
A
MET
79
A
SD
MET
79
1_555
A
HEC
108
B
FE
HEC
1_555
ELECTRON TRANSPORT
ELECTRON TRANSPORT(HEME PROTEIN), ELECTRON TRANSPORT
CYC2_RHOVI
UNP
1
P00083
21
127
1CO6
1
107
P00083
A
1
1
107
BINDING SITE FOR RESIDUE HEC A 108
A
HEC
108
Software
19
A
GLN
12
A
GLN
12
19
1_555
A
CYS
13
A
CYS
13
19
1_555
A
CYS
16
A
CYS
16
19
1_555
A
HIS
17
A
HIS
17
19
1_555
A
VAL
27
A
VAL
27
19
1_555
A
ARG
37
A
ARG
37
19
1_555
A
SER
39
A
SER
39
19
1_555
A
GLY
40
A
GLY
40
19
1_555
A
TYR
47
A
TYR
47
19
1_555
A
SER
48
A
SER
48
19
1_555
A
ASN
51
A
ASN
51
19
1_555
A
TRP
58
A
TRP
58
19
1_555
A
PHE
63
A
PHE
63
19
1_555
A
ILE
67
A
ILE
67
19
1_555
A
THR
77
A
THR
77
19
1_555
A
LYS
78
A
LYS
78
19
1_555
A
MET
79
A
MET
79
19
1_555
A
PHE
81
A
PHE
81
19
1_555
A
HOH
115
C
HOH
19
1_555
154
trigonal
P 32 2 1