1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 McAteer, K. Jing, Y. Kao, J. Taylor, J.-S. Kennedy, M.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 282 1013 1032 10.1006/jmbi.1998.2062 9753551 Solution-state structure of a DNA dodecamer duplex containing a Cis-syn thymine cyclobutane dimer, the major UV photoproduct of DNA. 1998 10.2210/pdb1coc/pdb pdb_00001coc 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3695.443 DNA (5'-D(*GP*CP*AP*CP*GP*AP*AP*TP*TP*AP*AP*G)-3') 1 syn polymer 3628.377 DNA (5'-D(*CP*TP*TP*AP*AP*TP*TP*CP*GP*TP*GP*C)-3') 1 syn polymer no no (DG)(DC)(DA)(DC)(DG)(DA)(DA)(DT)(DT)(DA)(DA)(DG) GCACGAATTAAG A polydeoxyribonucleotide no no (DC)(DT)(DT)(DA)(DA)(DT)(DT)(DC)(DG)(DT)(DG)(DC) CTTAATTCGTGC B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n -6.256 1 19 A 1 B 12 -9.602 A_DG1:DC12_B 1 24.386 0.355 -0.872 -0.187 0.725 1 19 A 2 B 11 -6.565 A_DC2:DG11_B 2 18.097 1.061 -0.434 -0.486 13.828 1 20 A 3 B 10 1.824 A_DA3:DT10_B 3 16.413 -0.206 0.177 -0.016 7.809 1 19 A 4 B 9 -0.210 A_DC4:DG9_B 4 14.130 1.062 -0.384 -0.326 -23.338 1 19 A 5 B 8 -4.840 A_DG5:DC8_B 5 10.002 -0.612 -0.814 -0.228 -13.405 1 20 A 6 B 7 -10.392 A_DA6:DT7_B 6 15.056 0.332 -0.639 0.000 -1.106 1 20 A 7 B 6 -16.640 A_DA7:DT6_B 7 10.135 -0.144 -0.787 -0.071 -2.852 1 20 A 8 B 5 -19.065 A_DT8:DA5_B 8 12.954 -0.078 -1.010 -0.134 7.587 1 20 A 9 B 4 -20.471 A_DT9:DA4_B 9 24.921 -0.125 -1.113 -0.307 -2.413 1 20 A 10 B 3 -11.664 A_DA10:DT3_B 10 2.016 -0.268 0.968 -0.127 9.771 1 20 A 11 B 2 -16.032 A_DA11:DT2_B 11 -8.372 -0.573 1.147 -0.457 6.368 1 19 A 12 B 1 -8.485 A_DG12:DC1_B 12 -17.981 -0.703 0.839 -0.416 3.515 39.452 A A 1 2 -2.438 B B 12 11 3.441 -1.645 -0.132 -1.855 AA_DG1DC2:DG11DC12_BB 1 -2.132 3.160 39.363 -2.541 -0.072 3.785 26.922 A A 2 3 -26.940 B B 11 10 3.229 -11.958 0.410 -2.535 AA_DC2DA3:DT10DG11_BB 2 -7.048 15.879 23.125 -1.899 -2.972 3.401 35.783 A A 3 4 2.953 B B 10 9 3.529 1.814 -0.370 -2.391 AA_DA3DC4:DG9DT10_BB 3 0.605 -0.985 35.733 -4.169 0.694 4.594 21.777 A A 4 5 -9.765 B B 9 8 4.368 -3.642 -0.557 -3.101 AA_DC4DG5:DC8DG9_BB 4 4.784 -12.827 20.940 -6.209 4.101 3.227 34.583 A A 5 6 -0.925 B B 8 7 3.234 -0.548 0.031 -1.781 AA_DG5DA6:DT7DC8_BB 5 5.517 -9.318 34.149 -2.912 0.794 3.253 33.191 A A 6 7 -10.994 B B 7 6 3.170 -6.227 -0.423 -1.192 AA_DA6DA7:DT6DT7_BB 6 4.397 -7.763 32.328 -1.046 1.476 3.444 35.610 A A 7 8 5.543 B B 6 5 3.579 3.384 -0.095 -1.228 AA_DA7DT8:DA5DT6_BB 7 1.540 -2.522 35.421 -2.537 0.397 3.442 34.027 A A 8 9 -4.680 B B 5 4 3.404 -2.735 0.205 -0.803 AA_DT8DT9:DA4DA5_BB 8 -1.712 2.929 33.878 -0.915 -0.636 4.424 39.169 A A 9 10 -26.514 B B 4 3 4.578 -17.093 0.195 -0.972 AA_DT9DA10:DT3DA4_BB 9 -7.865 12.200 34.510 1.564 -1.678 3.082 33.113 A A 10 11 -8.428 B B 3 2 2.974 -4.782 0.176 -0.953 AA_DA10DA11:DT2DT3_BB 10 2.714 -4.783 32.666 -0.920 0.118 3.280 35.968 A A 11 12 -1.999 B B 2 1 3.189 -1.229 0.655 -0.904 AA_DA11DG12:DC1DT2_BB 11 5.833 -9.487 35.486 -1.290 -0.233 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Data collection 1 0 1999-06-09 1 1 2008-04-26 1 2 2011-07-13 1 3 2022-02-16 1 4 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name BNL Y RCSB 1999-05-26 REL REL MEAN STRUCTURE 1 NOESY DQF-COSY HELCO HETERO-TOCSY 6.6 1 atm 278 K REFINEMENT DETAILS CAN BE FOUND IN THE JOURNAL CITATION ABOVE. molecular dynamics BIOSYM/MSI refinement Discover 3.1 structure solution Felix structure solution Discover structure solution BIRDER 750 Varian UNITYPLUS 500 Varian UNITYPLUS G 1 n 1 DG 1 A C 2 n 2 DC 2 A A 3 n 3 DA 3 A C 4 n 4 DC 4 A G 5 n 5 DG 5 A A 6 n 6 DA 6 A A 7 n 7 DA 7 A T 8 n 8 DT 8 A T 9 n 9 DT 9 A A 10 n 10 DA 10 A A 11 n 11 DA 11 A G 12 n 12 DG 12 A C 1 n 1 DC 1 B T 2 n 2 DT 2 B T 3 n 3 DT 3 B A 4 n 4 DA 4 B A 5 n 5 DA 5 B T 6 n 6 DT 6 B T 7 n 7 DT 7 B C 8 n 8 DC 8 B G 9 n 9 DG 9 B T 10 n 10 DT 10 B G 11 n 11 DG 11 B C 12 n 12 DC 12 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DG 5 0.063 SIDE CHAIN 1 A DA 7 0.058 SIDE CHAIN 1 A DT 8 0.089 SIDE CHAIN 1 A DT 9 0.076 SIDE CHAIN 1 B DC 1 0.101 SIDE CHAIN 1 B DT 2 0.079 SIDE CHAIN 1 B DT 3 0.059 SIDE CHAIN 1 B DA 4 0.050 SIDE CHAIN 1 B DA 5 0.066 SIDE CHAIN 1 B DT 6 0.084 SIDE CHAIN 1 B DG 9 0.064 SIDE CHAIN 1 5.04 0.30 108.30 113.34 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 4.27 0.30 108.30 112.57 A A A O4' C1' N9 DA DA DA 3 3 3 N 1 -5.84 0.80 105.90 100.06 A A A O4' C1' C2' DC DC DC 4 4 4 N 1 1.97 0.30 108.30 110.27 A A A O4' C1' N1 DC DC DC 4 4 4 N 1 6.71 0.30 108.30 115.01 A A A O4' C1' N9 DG DG DG 5 5 5 N 1 -5.42 0.80 105.90 100.48 A A A O4' C1' C2' DA DA DA 6 6 6 N 1 2.76 0.30 108.30 111.06 A A A O4' C1' N9 DA DA DA 6 6 6 N 1 -4.82 0.80 105.90 101.08 A A A O4' C1' C2' DT DT DT 8 8 8 N 1 4.48 0.30 108.30 112.78 A A A O4' C1' N9 DA DA DA 10 10 10 N 1 11.58 1.40 114.30 125.88 A A A N9 C1' C2' DA DA DA 11 11 11 N 1 4.21 0.30 108.30 112.51 A A A O4' C1' N9 DA DA DA 11 11 11 N 1 5.32 0.30 108.30 113.62 A A A O4' C1' N9 DG DG DG 12 12 12 N 1 5.13 0.30 108.30 113.43 B B B O4' C1' N9 DA DA DA 4 4 4 N 1 3.13 0.50 113.80 116.93 B B B N7 C8 N9 DA DA DA 4 4 4 N 1 9.52 1.40 114.30 123.82 B B B N9 C1' C2' DA DA DA 5 5 5 N 1 2.22 0.30 108.30 110.52 B B B O4' C1' N9 DA DA DA 5 5 5 N 1 3.29 0.50 113.80 117.09 B B B N7 C8 N9 DA DA DA 5 5 5 N 1 -5.77 0.80 105.90 100.13 B B B O4' C1' C2' DT DT DT 7 7 7 N 1 2.26 0.30 108.30 110.56 B B B O4' C1' N1 DC DC DC 8 8 8 N 1 -4.89 0.80 105.90 101.01 B B B O4' C1' C2' DG DG DG 9 9 9 N 1 7.24 0.30 108.30 115.54 B B B O4' C1' N9 DG DG DG 9 9 9 N 1 2.42 0.30 108.30 110.72 B B B O4' C1' N1 DT DT DT 10 10 10 N 1 4.48 0.30 108.30 112.78 B B B O4' C1' N9 DG DG DG 11 11 11 N 1 -2.58 0.40 106.40 103.82 B B B C8 N9 C4 DG DG DG 11 11 11 N 1 2.07 0.30 108.30 110.37 B B B O4' C1' N1 DC DC DC 12 12 12 N 1 A A C5' C4' DC DC 2 2 0.048 0.007 1.512 1.560 N 1 A A C5' C4' DC DC 4 4 0.051 0.007 1.512 1.563 N 1 A A C5' C4' DA DA 6 6 0.042 0.007 1.512 1.554 N 1 A A C5' C4' DT DT 8 8 0.045 0.007 1.512 1.557 N 1 A A C5 C7 DT DT 8 8 0.054 0.006 1.496 1.550 N 1 A A C5' C4' DT DT 9 9 0.054 0.007 1.512 1.566 N 1 A A C5 C7 DT DT 9 9 0.049 0.006 1.496 1.545 N 1 B B C5' C4' DC DC 1 1 0.044 0.007 1.512 1.556 N 1 B B C5' C4' DT DT 2 2 0.049 0.007 1.512 1.561 N 1 B B C5 C7 DT DT 2 2 0.037 0.006 1.496 1.533 N 1 B B C5' C4' DT DT 3 3 0.044 0.007 1.512 1.556 N 1 B B C5 C7 DT DT 3 3 0.039 0.006 1.496 1.535 N 1 B B C5' C4' DT DT 6 6 0.046 0.007 1.512 1.558 N 1 B B C5 C7 DT DT 6 6 0.045 0.006 1.496 1.541 N 1 B B C5' C4' DT DT 7 7 0.052 0.007 1.512 1.564 N 1 B B C5 C7 DT DT 7 7 0.043 0.006 1.496 1.539 N 1 B B C5' C4' DC DC 8 8 0.051 0.007 1.512 1.563 N 1 B B C5' C4' DT DT 10 10 0.050 0.007 1.512 1.562 N 1 B B C5 C7 DT DT 10 10 0.042 0.006 1.496 1.538 N SOLUTION-STATE STRUCTURE OF A DNA DODECAMER DUPLEX CONTAINING A CIS-SYN THYMINE CYCLOBUTANE DIMER. 1 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 12 B N3 DC 12 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 12 B O2 DC 12 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 12 B N4 DC 12 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 11 B N1 DG 11 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 11 B O6 DG 11 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 11 B N2 DG 11 1_555 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 B DT 10 B N3 DT 10 1_555 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 B DT 10 B O4 DT 10 1_555 hydrog WATSON-CRICK A DC 4 A N3 DC 4 1_555 B DG 9 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 4 A N4 DC 4 1_555 B DG 9 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 4 A O2 DC 4 1_555 B DG 9 B N2 DG 9 1_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 B DC 8 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 B DC 8 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 B DC 8 B N4 DC 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 7 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 7 B O4 DT 7 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 6 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 6 B O4 DT 6 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 7 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 7 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 5 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 5 B N6 DA 5 1_555 hydrog WATSON-CRICK A DT 9 A N3 DT 9 1_555 B DA 4 B N1 DA 4 1_555 hydrog WATSON-CRICK A DT 9 A O4 DT 9 1_555 B DA 4 B N6 DA 4 1_555 hydrog WATSON-CRICK A DT 9 A N3 DT 9 1_555 B DA 5 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 9 A O4 DT 9 1_555 B DA 5 B N6 DA 5 1_555 hydrog DA-DT PAIR A DA 10 A N6 DA 10 1_555 B DT 2 B O4 DT 2 1_555 hydrog WATSON-CRICK A DA 10 A N1 DA 10 1_555 B DT 3 B N3 DT 3 1_555 hydrog WATSON-CRICK A DA 10 A N6 DA 10 1_555 B DT 3 B O4 DT 3 1_555 hydrog DA-DC MISPAIR A DA 11 A N6 DA 11 1_555 B DC 1 B N3 DC 1 1_555 hydrog WATSON-CRICK A DA 11 A N1 DA 11 1_555 B DT 2 B N3 DT 2 1_555 hydrog WATSON-CRICK A DA 11 A N6 DA 11 1_555 B DT 2 B O4 DT 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 1 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 1 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 1 B N4 DC 1 1_555 DNA DNA STRUCTURE, UV-PHOTOPRODUCTS, BII BACKBONE, DNA 1COC PDB 1 1COC 1COC PDB 2 1COC 1 12 1COC 1 12 1COC A 1 1 12 1 12 1COC 1 12 1COC B 2 1 12 1 P 1