1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Katahira, R.
Katahira, M.
Yamashita, Y.
Ogawa, H.
Kyogoku, Y.
Yoshida, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C6 H12 O4
148.157
beta-D-Olivopyranose
beta-D-Olivose; 2,6-dideoxy-beta-D-arabino-hexopyranose; 2,6-dideoxy-beta-D-glucopyranose; 2,6-dideoxy-beta-D-mannopyranose; 2-deoxy-beta-D-quinovopyranose; 2-deoxy-beta-D-rhamnoopyranose; D-Olivose; Olivose; 2,6-DIDEOXY-BETA-D-GLUCOSE; 2,6-DIDEOXY-BETA-D-MANNOSE
D-saccharide, beta linking
C6 H12 O4
148.157
2,6-dideoxy-beta-D-galactopyranose
2,6-DIDEOXY-BETA-D-GALACTOSE; 2,6-DIDEOXY-BETA-D-TALOSE; 2,6-dideoxy-beta-D-lyxo-hexopyranose; 2-deoxy-beta-D-fucopyranose; 2,6-dideoxy-D-galactose; 2,6-dideoxy-galactose
D-saccharide, beta linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C7 H14 O4
162.184
2,6-dideoxy-4-O-methyl-beta-D-glucopyranose
4-O-METHYL-2,6-DIDEOXY-BETA-D-GLUCOSE; 4-O-METHYL-2,6-DIDEOXY-BETA-D-MANNOSE; 2,6-dideoxy-4-O-methyl-beta-D-glucose; 2,6-dideoxy-4-O-methyl-D-glucose; 2,6-dideoxy-4-O-methyl-glucose
D-saccharide, beta linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C24 H30 O7
430.491
1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-(SEC-BUTYL)-ANTHRACENE
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
R
C
N
72
N
C
N
73
R
C
N
74
S
C
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
O
N
79
N
O
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
R
C
N
94
N
C
N
95
R
C
N
96
R
C
N
97
R
C
N
98
N
C
N
99
N
O
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
O
N
116
N
P
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
O
N
123
S
C
N
124
N
O
N
125
N
C
N
126
R
C
Y
127
N
N
Y
128
N
C
Y
129
N
N
Y
130
N
C
N
131
N
C
N
132
N
O
N
133
N
N
N
134
N
C
N
135
N
N
N
136
N
N
Y
137
N
C
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
O
N
153
R
C
N
154
R
C
N
155
N
C
N
156
R
C
N
157
N
O
N
158
S
C
N
159
N
O
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
O
N
178
N
P
N
179
N
O
N
180
N
O
N
181
N
O
N
182
N
C
N
183
R
C
N
184
N
O
N
185
S
C
N
186
N
O
N
187
N
C
N
188
R
C
N
189
N
N
N
190
N
C
N
191
N
O
N
192
N
N
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
C
N
214
N
O
Y
215
N
C
N
216
N
C
N
217
R
C
N
218
N
C
Y
219
N
C
Y
220
N
C
Y
221
N
C
Y
222
N
C
Y
223
N
C
Y
224
N
C
Y
225
N
C
N
226
N
O
Y
227
N
C
Y
228
N
C
N
229
N
O
N
230
N
C
N
231
R
C
N
232
S
C
N
233
N
O
N
234
N
C
N
235
N
O
N
236
S
C
N
237
N
O
N
238
R
C
N
239
N
O
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
MG
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
Y
141
N
sing
Y
142
N
sing
Y
143
N
doub
N
144
N
sing
Y
145
N
sing
N
146
N
sing
Y
147
N
doub
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
Y
222
N
doub
Y
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
Y
233
N
sing
Y
234
N
doub
N
235
N
sing
Y
236
N
sing
Y
237
N
sing
Y
238
N
doub
N
239
N
sing
Y
240
N
sing
N
241
N
sing
Y
242
N
doub
N
243
N
sing
N
244
N
sing
Y
245
N
sing
N
246
N
sing
Y
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
26
744
755
10.1093/nar/26.3.744
9443966
Solution structure of the novel antitumor drug UCH9 complexed with d(TTGGCCAA)2 as determined by NMR.
1998
10.2210/pdb1cp8/pdb
pdb_00001cp8
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
TWO MOLECULES OF THE DRUG UCH9 (DDA-DXA-DDA-DDL-DRI-DDA) BOUND IN THE MINOR GROOVE
THE MODEL CONTAINS TWO MOLECULES OF UCH9 AND ONE MG CATION
WHICH IS COORDINATED TO TWO UCH9 MOLECULES. IN THIS ENTRY
UCH9 IS PRESENTED AS HET GROUP, DDA-DXA-DDA-DDL-DRI-DDA.
THESE GROUPS ARE NUMBERED 1-6 FOR ONE UCH9 AND 7-12 FOR THE
OTHER UCH9.
2426.617
DNA (5'-D(P*TP*TP*GP*GP*CP*CP*AP*A)-3')
2
syn
polymer
UCH9 WAS ISOLATED FROM STREPTOMYCES SP. THE DETAILS ARE
SHOWN IN THE FOLLOWING PAPER: J. ANTIBIOTICS 51, 261-266,
552.609
beta-D-Olivopyranose-(1-3)-2,6-dideoxy-4-O-methyl-beta-D-glucopyranose-(1-3)-2,6-dideoxy-beta-D-galactopyranose-(1-3)-beta-D-Olivopyranose
2
syn
branched
UCH9 WAS ISOLATED FROM STREPTOMYCES SP. THE DETAILS ARE
SHOWN IN THE FOLLOWING PAPER: J. ANTIBIOTICS 51, 261-266,
148.157
beta-D-Olivopyranose
2
syn
non-polymer
430.491
1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-(SEC-BUTYL)-ANTHRACENE
2
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
no
no
(DT)(DT)(DG)(DG)(DC)(DC)(DA)(DA)
TTGGCCAA
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
-0.803
1
20
A
1
B
8
-9.521
A_DT1:DA8_B
1
0.213
0.156
0.028
0.086
-0.997
1
20
A
2
B
7
-14.325
A_DT2:DA7_B
2
-0.123
-0.034
-0.008
0.176
0.424
1
19
A
3
B
6
0.642
A_DG3:DC6_B
3
-0.784
0.646
0.028
0.150
0.862
1
19
A
4
B
5
0.434
A_DG4:DC5_B
4
-1.411
0.569
0.027
0.152
-0.911
1
19
A
5
B
4
0.283
A_DC5:DG4_B
5
-1.516
-0.570
0.028
0.152
-0.465
1
19
A
6
B
3
0.540
A_DC6:DG3_B
6
-0.782
-0.631
0.030
0.147
0.986
1
20
A
7
B
2
-14.391
A_DA7:DT2_B
7
-0.056
0.032
-0.007
0.172
0.807
1
20
A
8
B
1
-9.472
A_DA8:DT1_B
8
0.231
-0.153
0.029
0.081
3.787
32.782
A
A
1
2
-4.701
B
B
8
7
3.765
-2.650
-0.826
-0.298
AA_DT1DT2:DA7DA8_BB
1
-0.457
0.810
32.674
-0.002
1.372
3.430
34.654
A
A
2
3
-14.253
B
B
7
6
3.753
-8.404
1.612
0.438
AA_DT2DG3:DC6DA7_BB
2
-2.333
3.957
33.571
2.177
-3.106
2.690
30.309
A
A
3
4
9.956
B
B
6
5
2.998
5.180
0.560
-1.504
AA_DG3DG4:DC5DC6_BB
3
-0.759
1.459
29.864
-3.792
-1.205
3.584
29.742
A
A
4
5
-13.050
B
B
5
4
3.327
-6.645
-0.004
-1.544
AA_DG4DC5:DG4DC5_BB
4
-0.028
0.055
29.006
-1.518
0.002
2.687
30.426
A
A
5
6
10.057
B
B
4
3
2.999
5.252
-0.562
-1.509
AA_DC5DC6:DG3DG4_BB
5
0.769
-1.473
29.970
-3.796
1.206
3.428
34.596
A
A
6
7
-14.341
B
B
3
2
3.750
-8.441
-1.614
0.433
AA_DC6DA7:DT2DG3_BB
6
2.306
-3.918
33.504
2.181
3.110
3.787
32.818
A
A
7
8
-4.778
B
B
2
1
3.765
-2.697
0.829
-0.298
AA_DA7DA8:DT1DT2_BB
7
0.458
-0.812
32.707
0.009
-1.377
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Structure summary
1
0
1999-07-01
1
1
2008-04-26
1
2
2011-07-13
2
0
2020-07-29
2
1
2023-12-27
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_value_order
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
DDA
9
n
C
DDA
1
N
DDL
10
n
C
DDL
2
N
DRI
11
n
C
DRI
3
N
DDA
12
n
C
DDA
4
M
DDA
3
n
D
DDA
1
M
DDL
4
n
D
DDL
2
M
DRI
5
n
D
DRI
3
M
DDA
6
n
D
DDA
4
DOlib
b-D-Olivopyranose
b-D-2,6-deoxy-Glcp
Oli
b-D-2-deoxy-Fucp
b-D-2,6-deoxy-Glcp4OMe
RCSB
Y
RCSB
1999-06-11
REL
oligosaccharide
WURCS=2.0/3,4,3/[ad122m-1b_1-5][ad112m-1b_1-5][ad122m-1b_1-5_4*OC]/1-2-3-1/a3-b1_b3-c1_c3-d1
2
PDB2Glycan
1.1.0
WURCS
[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2-deoxy-Fucp]{[(3+1)][b-D-2,6-deoxy-Glcp4Me]{[(3+1)][b-D-2,6-deoxy-Glcp]{}}}}
2
PDB-CARE
LINUCS
C1
O3
DDL
DDA
2
1
2
O1
HO3
sing
C1
O3
DRI
DDL
3
2
2
O1
HO3
sing
C1
O3
DDA
DRI
4
3
2
O1
HO3
sing
n
n
n
n
DDA
beta-D-Olivopyranose
DXA
1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-(SEC-BUTYL)-ANTHRACENE
MG
MAGNESIUM ION
BEST STRUCTURE
LEAST RESTRAINT VIOLATION
1
NOESY
DQF-COSY
TOCSY
E.COSY
6.9
303
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.
THE ABSOLUTE CONFIGURATION OF THE HYDROPHILIC SIDECHAIN HAS
NOT BEEN DETERMINED. IN THIS MODEL, IT WAS SET TO THE SAME
CONFIGURATION AS THAT OF THE OTHER AUREOLIC ACID GROUP
COMPOUNDS, SUCH AS CHROMOMYCIN A3.
simulated annealing
1
10% WATER/90% D2O, 100% D2O
BRUNGER
refinement
X-PLOR
3.1
structure solution
X-PLOR
500
Bruker
DMX500
DDA
7
3
DDA
DDA
13
A
DXA
8
4
DXA
DXA
14
A
DDA
1
3
DDA
DDA
13
B
MG
13
5
MG
MG
14
B
DXA
2
4
DXA
DXA
15
B
T
1
n
1
DT
1
A
T
2
n
2
DT
2
A
G
3
n
3
DG
3
A
G
4
n
4
DG
4
A
C
5
n
5
DC
5
A
C
6
n
6
DC
6
A
A
7
n
7
DA
7
A
A
8
n
8
DA
8
A
T
1
n
1
DT
1
B
T
2
n
2
DT
2
B
G
3
n
3
DG
3
B
G
4
n
4
DG
4
B
C
5
n
5
DC
5
B
C
6
n
6
DC
6
B
A
7
n
7
DA
7
B
A
8
n
8
DA
8
B
author_defined_assembly
2
dimeric
A
DXA
14
F
O1
DXA
1_555
B
MG
14
H
MG
MG
1_555
A
DXA
14
F
O9
DXA
1_555
59.7
A
DXA
14
F
O1
DXA
1_555
B
MG
14
H
MG
MG
1_555
B
DXA
15
I
O9
DXA
1_555
89.4
A
DXA
14
F
O9
DXA
1_555
B
MG
14
H
MG
MG
1_555
B
DXA
15
I
O9
DXA
1_555
146.4
A
DXA
14
F
O1
DXA
1_555
B
MG
14
H
MG
MG
1_555
B
DXA
15
I
O1
DXA
1_555
75.2
A
DXA
14
F
O9
DXA
1_555
B
MG
14
H
MG
MG
1_555
B
DXA
15
I
O1
DXA
1_555
94.2
B
DXA
15
I
O9
DXA
1_555
B
MG
14
H
MG
MG
1_555
B
DXA
15
I
O1
DXA
1_555
63.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
2.26
0.30
108.30
110.56
A
A
A
O4'
C1'
N1
DT
DT
DT
1
1
1
N
1
4.16
0.30
108.30
112.46
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
4.78
0.50
113.10
117.88
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
1
-2.91
0.40
106.40
103.49
A
A
A
C8
N9
C4
DG
DG
DG
3
3
3
N
1
5.03
0.30
108.30
113.33
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
4.56
0.50
113.10
117.66
A
A
A
N7
C8
N9
DG
DG
DG
4
4
4
N
1
-2.61
0.40
106.40
103.79
A
A
A
C8
N9
C4
DG
DG
DG
4
4
4
N
1
3.45
0.30
108.30
111.75
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
1.86
0.30
108.30
110.16
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
3.00
0.30
108.30
111.30
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
1
3.68
0.50
113.80
117.48
A
A
A
N7
C8
N9
DA
DA
DA
7
7
7
N
1
3.39
0.30
108.30
111.69
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
1
3.98
0.50
113.80
117.78
A
A
A
N7
C8
N9
DA
DA
DA
8
8
8
N
1
2.32
0.30
108.30
110.62
B
B
B
O4'
C1'
N1
DT
DT
DT
1
1
1
N
1
4.17
0.30
108.30
112.47
B
B
B
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
4.77
0.50
113.10
117.87
B
B
B
N7
C8
N9
DG
DG
DG
3
3
3
N
1
-2.84
0.40
106.40
103.56
B
B
B
C8
N9
C4
DG
DG
DG
3
3
3
N
1
5.01
0.30
108.30
113.31
B
B
B
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
4.58
0.50
113.10
117.68
B
B
B
N7
C8
N9
DG
DG
DG
4
4
4
N
1
-2.61
0.40
106.40
103.79
B
B
B
C8
N9
C4
DG
DG
DG
4
4
4
N
1
3.28
0.30
108.30
111.58
B
B
B
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
1.84
0.30
108.30
110.14
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
3.06
0.30
108.30
111.36
B
B
B
O4'
C1'
N9
DA
DA
DA
7
7
7
N
1
3.75
0.50
113.80
117.55
B
B
B
N7
C8
N9
DA
DA
DA
7
7
7
N
1
3.37
0.30
108.30
111.67
B
B
B
O4'
C1'
N9
DA
DA
DA
8
8
8
N
1
4.01
0.50
113.80
117.81
B
B
B
N7
C8
N9
DA
DA
DA
8
8
8
N
1
-2.46
0.40
105.80
103.34
B
B
B
C8
N9
C4
DA
DA
DA
8
8
8
N
NMR STRUCTURE OF DNA (5'-D(TTGGCCAA)2-3') COMPLEXED WITH NOVEL ANTITUMOR DRUG UCH9
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
3
N
N
5
N
N
4
N
N
covale
1.406
one
A
DDA
13
E
O1
DDA
1_555
A
DXA
14
F
C6
DXA
1_555
covale
1.421
one
A
DXA
14
F
C2
DXA
1_555
C
DDA
1
C
O1
DDA
1_555
covale
1.406
one
B
DDA
13
G
O1
DDA
1_555
B
DXA
15
I
C6
DXA
1_555
covale
1.421
one
B
DXA
15
I
C2
DXA
1_555
D
DDA
1
D
O1
DDA
1_555
covale
1.417
both
sing
C
DDA
1
C
O3
DDA
1_555
C
DDL
2
C
C1
DDL
1_555
covale
1.427
both
sing
C
DDL
2
C
O3
DDL
1_555
C
DRI
3
C
C1
DRI
1_555
covale
1.419
both
C
DRI
3
C
O3
DRI
1_555
C
DDA
4
C
C1
DDA
1_555
covale
1.418
both
sing
D
DDA
1
D
O3
DDA
1_555
D
DDL
2
D
C1
DDL
1_555
covale
1.427
both
sing
D
DDL
2
D
O3
DDL
1_555
D
DRI
3
D
C1
DRI
1_555
covale
1.419
both
D
DRI
3
D
O3
DRI
1_555
D
DDA
4
D
C1
DDA
1_555
metalc
2.749
A
DXA
14
F
O1
DXA
1_555
B
MG
14
H
MG
MG
1_555
metalc
2.357
A
DXA
14
F
O9
DXA
1_555
B
MG
14
H
MG
MG
1_555
metalc
2.358
B
MG
14
H
MG
MG
1_555
B
DXA
15
I
O9
DXA
1_555
metalc
2.538
B
MG
14
H
MG
MG
1_555
B
DXA
15
I
O1
DXA
1_555
hydrog
WATSON-CRICK
A
DT
1
A
N3
DT
1
1_555
B
DA
8
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
A
DT
1
A
O4
DT
1
1_555
B
DA
8
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
A
DT
2
A
N3
DT
2
1_555
B
DA
7
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
A
DT
2
A
O4
DT
2
1_555
B
DA
7
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
6
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
6
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
6
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
5
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
5
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
5
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
3
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
3
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
3
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N1
DA
7
1_555
B
DT
2
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N6
DA
7
1_555
B
DT
2
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N1
DA
8
1_555
B
DT
1
B
N3
DT
1
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N6
DA
8
1_555
B
DT
1
B
O4
DT
1
1_555
DNA
DNA
1CP8
PDB
1
1CP8
1
8
1CP8
1
8
1CP8
A
1
1
8
1
8
1CP8
1
8
1CP8
B
1
1
8
1
P 1