0.021236 0.000000 0.002717 0.000000 0.011080 0.000000 0.000000 0.000000 0.016234 0.00000 0.00000 0.00000 Huber, C.P. Jia, Z. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 97.29 90.00 47.090 90.250 62.100 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 270 5527 5533 10.1074/jbc.270.10.5527 7890671 Crystal structures of recombinant rat cathepsin B and a cathepsin B-inhibitor complex. Implications for structure-based inhibitor design. 1995 US J.Biol.Chem. JBCHA3 0071 0021-9258 265 5950 Crystallization of Recombinant Rat Cathepsin B 1990 10.2210/pdb1cpj/pdb pdb_00001cpj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 AREA DETECTOR 1992-12 XUONG-HAMLIN MULTIWIRE M x-ray 1 1.5418 1.0 1.5418 28441.562 CATHEPSIN B 3.4.22.1 S115A 2 man polymer 18.015 water 190 nat water no no FSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGG YPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVS DSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKIL RGENHCGIESEIVAGIPRTQ FSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGG YPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVS DSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKIL RGENHCGIESEIVAGIPRTQ A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Norway rat Rattus baker's yeast Saccharomyces sample CDNA 10116 Rattus norvegicus 4932 Saccharomyces cerevisiae PLASMID 2.30 46.52 database_2 pdbx_database_status struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Other 1 0 1995-12-07 1 1 2008-03-24 1 2 2011-07-13 1 3 2021-11-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_ref_seq_dif.details SHEET THERE IS A BIFURCATED SHEET IN EACH MOLECULE. EACH IS REPRESENTED BY TWO SHEETS WITH SOME STRANDS IN COMMON. THUS STRANDS 4, 5, 6 OF SHEETS SA1 AND SA2 ARE IDENTICAL TO STRANDS 2, 3, 4 OF SHEETS SA2 AND SB2 IN CHAINS A AND B, RESPECTIVELY. Y BNL 1995-07-17 REL REL HOH water THE V223A SUBSTITUTION WAS PRESENT IN THE PLASMID SUPPLIED TO DR. J. S. MORT BY DR. SHU CHAN ALTHOUGH IT IS NOT MENTIONED IN THE PAPER GIVING THE CDNA SEQUENCE. IT IS POSSIBLE THAT THIS CHANGE, ALSO WITH RESPECT TO THE ORIGINAL PROTEIN SEQUENCE FROM A PREPARATION OF PURIFIED PROTEIN, COULD REPRESENT A POLYMORPHISM BETWEEN THE STRAINS OF RAT THAT WERE USED IN EACH CASE. THE SUBSTITUTION IS NOT STRUCTURALLY IMPORTANT. HOH 601 2 HOH HOH 601 A HOH 602 2 HOH HOH 602 A HOH 603 2 HOH HOH 603 A HOH 604 2 HOH HOH 604 A HOH 605 2 HOH HOH 605 A HOH 606 2 HOH HOH 606 A HOH 607 2 HOH HOH 607 A HOH 608 2 HOH HOH 608 A HOH 610 2 HOH HOH 610 A HOH 611 2 HOH HOH 611 A HOH 612 2 HOH HOH 612 A HOH 614 2 HOH HOH 614 A HOH 615 2 HOH HOH 615 A HOH 616 2 HOH HOH 616 A HOH 617 2 HOH HOH 617 A HOH 618 2 HOH HOH 618 A HOH 619 2 HOH HOH 619 A HOH 620 2 HOH HOH 620 A HOH 624 2 HOH HOH 624 A HOH 626 2 HOH HOH 626 A HOH 627 2 HOH HOH 627 A HOH 628 2 HOH HOH 628 A HOH 629 2 HOH HOH 629 A HOH 630 2 HOH HOH 630 A HOH 632 2 HOH HOH 632 A HOH 636 2 HOH HOH 636 A HOH 637 2 HOH HOH 637 A HOH 638 2 HOH HOH 638 A HOH 639 2 HOH HOH 639 A HOH 642 2 HOH HOH 642 A HOH 643 2 HOH HOH 643 A HOH 644 2 HOH HOH 644 A HOH 645 2 HOH HOH 645 A HOH 646 2 HOH HOH 646 A HOH 649 2 HOH HOH 649 A HOH 667 2 HOH HOH 667 A HOH 675 2 HOH HOH 675 A HOH 681 2 HOH HOH 681 A HOH 685 2 HOH HOH 685 A HOH 686 2 HOH HOH 686 A HOH 687 2 HOH HOH 687 A HOH 690 2 HOH HOH 690 A HOH 691 2 HOH HOH 691 A HOH 692 2 HOH HOH 692 A HOH 693 2 HOH HOH 693 A HOH 694 2 HOH HOH 694 A HOH 695 2 HOH HOH 695 A HOH 696 2 HOH HOH 696 A HOH 698 2 HOH HOH 698 A HOH 699 2 HOH HOH 699 A HOH 701 2 HOH HOH 701 A HOH 702 2 HOH HOH 702 A HOH 703 2 HOH HOH 703 A HOH 704 2 HOH HOH 704 A HOH 705 2 HOH HOH 705 A HOH 706 2 HOH HOH 706 A HOH 707 2 HOH HOH 707 A HOH 708 2 HOH HOH 708 A HOH 709 2 HOH HOH 709 A HOH 710 2 HOH HOH 710 A HOH 712 2 HOH HOH 712 A HOH 714 2 HOH HOH 714 A HOH 731 2 HOH HOH 731 A HOH 736 2 HOH HOH 736 A HOH 737 2 HOH HOH 737 A HOH 738 2 HOH HOH 738 A HOH 739 2 HOH HOH 739 A HOH 740 2 HOH HOH 740 A HOH 741 2 HOH HOH 741 A HOH 742 2 HOH HOH 742 A HOH 743 2 HOH HOH 743 A HOH 744 2 HOH HOH 744 A HOH 745 2 HOH HOH 745 A HOH 746 2 HOH HOH 746 A HOH 747 2 HOH HOH 747 A HOH 752 2 HOH HOH 752 A HOH 754 2 HOH HOH 754 A HOH 756 2 HOH HOH 756 A HOH 761 2 HOH HOH 761 A HOH 762 2 HOH HOH 762 A HOH 763 2 HOH HOH 763 A HOH 764 2 HOH HOH 764 A HOH 767 2 HOH HOH 767 A HOH 770 2 HOH HOH 770 A HOH 771 2 HOH HOH 771 A HOH 772 2 HOH HOH 772 A HOH 774 2 HOH HOH 774 A HOH 776 2 HOH HOH 776 A HOH 778 2 HOH HOH 778 A HOH 780 2 HOH HOH 780 A HOH 781 2 HOH HOH 781 A HOH 782 2 HOH HOH 782 A HOH 784 2 HOH HOH 784 A HOH 785 2 HOH HOH 785 A HOH 786 2 HOH HOH 786 A HOH 787 2 HOH HOH 787 A HOH 609 2 HOH HOH 609 B HOH 613 2 HOH HOH 613 B HOH 621 2 HOH HOH 621 B HOH 622 2 HOH HOH 622 B HOH 623 2 HOH HOH 623 B HOH 625 2 HOH HOH 625 B HOH 631 2 HOH HOH 631 B HOH 633 2 HOH HOH 633 B HOH 634 2 HOH HOH 634 B HOH 635 2 HOH HOH 635 B HOH 640 2 HOH HOH 640 B HOH 641 2 HOH HOH 641 B HOH 647 2 HOH HOH 647 B HOH 648 2 HOH HOH 648 B HOH 650 2 HOH HOH 650 B HOH 651 2 HOH HOH 651 B HOH 652 2 HOH HOH 652 B HOH 653 2 HOH HOH 653 B HOH 654 2 HOH HOH 654 B HOH 655 2 HOH HOH 655 B HOH 656 2 HOH HOH 656 B HOH 657 2 HOH HOH 657 B HOH 658 2 HOH HOH 658 B HOH 659 2 HOH HOH 659 B HOH 660 2 HOH HOH 660 B HOH 661 2 HOH HOH 661 B HOH 662 2 HOH HOH 662 B HOH 663 2 HOH HOH 663 B HOH 664 2 HOH HOH 664 B HOH 665 2 HOH HOH 665 B HOH 666 2 HOH HOH 666 B HOH 668 2 HOH HOH 668 B HOH 669 2 HOH HOH 669 B HOH 670 2 HOH HOH 670 B HOH 671 2 HOH HOH 671 B HOH 672 2 HOH HOH 672 B HOH 673 2 HOH HOH 673 B HOH 674 2 HOH HOH 674 B HOH 676 2 HOH HOH 676 B HOH 677 2 HOH HOH 677 B HOH 678 2 HOH HOH 678 B HOH 679 2 HOH HOH 679 B HOH 680 2 HOH HOH 680 B HOH 682 2 HOH HOH 682 B HOH 683 2 HOH HOH 683 B HOH 684 2 HOH HOH 684 B HOH 688 2 HOH HOH 688 B HOH 689 2 HOH HOH 689 B HOH 697 2 HOH HOH 697 B HOH 700 2 HOH HOH 700 B HOH 711 2 HOH HOH 711 B HOH 713 2 HOH HOH 713 B HOH 715 2 HOH HOH 715 B HOH 716 2 HOH HOH 716 B HOH 717 2 HOH HOH 717 B HOH 718 2 HOH HOH 718 B HOH 719 2 HOH HOH 719 B HOH 720 2 HOH HOH 720 B HOH 721 2 HOH HOH 721 B HOH 722 2 HOH HOH 722 B HOH 723 2 HOH HOH 723 B HOH 724 2 HOH HOH 724 B HOH 725 2 HOH HOH 725 B HOH 726 2 HOH HOH 726 B HOH 727 2 HOH HOH 727 B HOH 728 2 HOH HOH 728 B HOH 729 2 HOH HOH 729 B HOH 730 2 HOH HOH 730 B HOH 732 2 HOH HOH 732 B HOH 733 2 HOH HOH 733 B HOH 734 2 HOH HOH 734 B HOH 748 2 HOH HOH 748 B HOH 749 2 HOH HOH 749 B HOH 750 2 HOH HOH 750 B HOH 751 2 HOH HOH 751 B HOH 753 2 HOH HOH 753 B HOH 755 2 HOH HOH 755 B HOH 757 2 HOH HOH 757 B HOH 758 2 HOH HOH 758 B HOH 759 2 HOH HOH 759 B HOH 760 2 HOH HOH 760 B HOH 765 2 HOH HOH 765 B HOH 766 2 HOH HOH 766 B HOH 768 2 HOH HOH 768 B HOH 769 2 HOH HOH 769 B HOH 773 2 HOH HOH 773 B HOH 775 2 HOH HOH 775 B HOH 777 2 HOH HOH 777 B HOH 779 2 HOH HOH 779 B HOH 783 2 HOH HOH 783 B HOH 788 2 HOH HOH 788 B HOH 789 2 HOH HOH 789 B HOH 790 2 HOH HOH 790 B HOH 791 2 HOH HOH 791 B n 1 -5 A n 2 -4 A n 3 -3 A n 4 -2 A n 5 -1 A n 6 0 A LEU 1 n 7 LEU 1 A PRO 2 n 8 PRO 2 A GLU 3 n 9 GLU 3 A SER 4 n 10 SER 4 A PHE 5 n 11 PHE 5 A ASP 6 n 12 ASP 6 A ALA 7 n 13 ALA 7 A ARG 8 n 14 ARG 8 A GLU 9 n 15 GLU 9 A GLN 10 n 16 GLN 10 A TRP 11 n 17 TRP 11 A SER 12 n 18 SER 12 A ASN 13 n 19 ASN 13 A CYS 14 n 20 CYS 14 A PRO 15 n 21 PRO 15 A THR 16 n 22 THR 16 A ILE 17 n 23 ILE 17 A ALA 18 n 24 ALA 18 A GLN 19 n 25 GLN 19 A ILE 20 n 26 ILE 20 A ARG 21 n 27 ARG 21 A ASP 22 n 28 ASP 22 A GLN 23 n 29 GLN 23 A GLY 24 n 30 GLY 24 A SER 25 n 31 SER 25 A CYS 26 n 32 CYS 26 A GLY 27 n 33 GLY 27 A SER 28 n 34 SER 28 A CYS 29 n 35 CYS 29 A TRP 30 n 36 TRP 30 A ALA 31 n 37 ALA 31 A PHE 32 n 38 PHE 32 A GLY 33 n 39 GLY 33 A ALA 34 n 40 ALA 34 A VAL 35 n 41 VAL 35 A GLU 36 n 42 GLU 36 A ALA 37 n 43 ALA 37 A MET 38 n 44 MET 38 A SER 39 n 45 SER 39 A ASP 40 n 46 ASP 40 A ARG 41 n 47 ARG 41 A ILE 42 n 48 ILE 42 A CYS 43 n 49 CYS 43 A ILE 44 n 50 ILE 44 A HIS 45 n 51 HIS 45 A THR 46 n 52 THR 46 A ASN 47 n 53 ASN 47 A GLY 48 n 54 GLY 48 A ARG 49 n 55 ARG 49 A VAL 50 n 56 VAL 50 A ASN 51 n 57 ASN 51 A VAL 52 n 58 VAL 52 A GLU 53 n 59 GLU 53 A VAL 54 n 60 VAL 54 A SER 55 n 61 SER 55 A ALA 56 n 62 ALA 56 A GLU 57 n 63 GLU 57 A ASP 58 n 64 ASP 58 A LEU 59 n 65 LEU 59 A LEU 60 n 66 LEU 60 A THR 61 n 67 THR 61 A CYS 62 n 68 CYS 62 A CYS 63 n 69 CYS 63 A GLY 64 n 70 GLY 64 A ILE 65 n 71 ILE 65 A GLN 66 n 72 GLN 66 A CYS 67 n 73 CYS 67 A GLY 68 n 74 GLY 68 A ASP 69 n 75 ASP 69 A GLY 70 n 76 GLY 70 A CYS 71 n 77 CYS 71 A ASN 72 n 78 ASN 72 A GLY 73 n 79 GLY 73 A GLY 74 n 80 GLY 74 A TYR 75 n 81 TYR 75 A PRO 76 n 82 PRO 76 A SER 77 n 83 SER 77 A GLY 78 n 84 GLY 78 A ALA 79 n 85 ALA 79 A TRP 80 n 86 TRP 80 A ASN 81 n 87 ASN 81 A PHE 82 n 88 PHE 82 A TRP 83 n 89 TRP 83 A THR 84 n 90 THR 84 A ARG 85 n 91 ARG 85 A LYS 86 n 92 LYS 86 A GLY 87 n 93 GLY 87 A LEU 88 n 94 LEU 88 A VAL 89 n 95 VAL 89 A SER 90 n 96 SER 90 A GLY 91 n 97 GLY 91 A GLY 92 n 98 GLY 92 A VAL 93 n 99 VAL 93 A TYR 94 n 100 TYR 94 A ASN 95 n 101 ASN 95 A SER 96 n 102 SER 96 A HIS 97 n 103 HIS 97 A ILE 98 n 104 ILE 98 A GLY 99 n 105 GLY 99 A CYS 100 n 106 CYS 100 A LEU 101 n 107 LEU 101 A PRO 102 n 108 PRO 102 A TYR 103 n 109 TYR 103 A THR 104 n 110 THR 104 A ILE 105 n 111 ILE 105 A PRO 106 n 112 PRO 106 A PRO 107 n 113 PRO 107 A CYS 108 n 114 CYS 108 A GLU 109 n 115 GLU 109 A HIS 110 n 116 HIS 110 A HIS 111 n 117 HIS 111 A VAL 112 n 118 VAL 112 A ASN 113 n 119 ASN 113 A GLY 114 n 120 GLY 114 A ALA 115 n 121 ALA 115 A ARG 116 n 122 ARG 116 A PRO 117 n 123 PRO 117 A PRO 118 n 124 PRO 118 A CYS 119 n 125 CYS 119 A THR 120 n 126 THR 120 A GLY 121 n 127 GLY 121 A GLU 122 n 128 GLU 122 A GLY 123 n 129 GLY 123 A ASP 124 n 130 ASP 124 A THR 125 n 131 THR 125 A PRO 126 n 132 PRO 126 A LYS 127 n 133 LYS 127 A CYS 128 n 134 CYS 128 A ASN 129 n 135 ASN 129 A LYS 130 n 136 LYS 130 A MET 131 n 137 MET 131 A CYS 132 n 138 CYS 132 A GLU 133 n 139 GLU 133 A ALA 134 n 140 ALA 134 A GLY 135 n 141 GLY 135 A TYR 136 n 142 TYR 136 A SER 137 n 143 SER 137 A THR 138 n 144 THR 138 A SER 139 n 145 SER 139 A TYR 140 n 146 TYR 140 A LYS 141 n 147 LYS 141 A GLU 142 n 148 GLU 142 A ASP 143 n 149 ASP 143 A LYS 144 n 150 LYS 144 A HIS 145 n 151 HIS 145 A TYR 146 n 152 TYR 146 A GLY 147 n 153 GLY 147 A TYR 148 n 154 TYR 148 A THR 149 n 155 THR 149 A SER 150 n 156 SER 150 A TYR 151 n 157 TYR 151 A SER 152 n 158 SER 152 A VAL 153 n 159 VAL 153 A SER 154 n 160 SER 154 A ASP 155 n 161 ASP 155 A SER 156 n 162 SER 156 A GLU 157 n 163 GLU 157 A LYS 158 n 164 LYS 158 A GLU 159 n 165 GLU 159 A ILE 160 n 166 ILE 160 A MET 161 n 167 MET 161 A ALA 162 n 168 ALA 162 A GLU 163 n 169 GLU 163 A ILE 164 n 170 ILE 164 A TYR 165 n 171 TYR 165 A LYS 166 n 172 LYS 166 A ASN 167 n 173 ASN 167 A GLY 168 n 174 GLY 168 A PRO 169 n 175 PRO 169 A VAL 170 n 176 VAL 170 A GLU 171 n 177 GLU 171 A GLY 172 n 178 GLY 172 A ALA 173 n 179 ALA 173 A PHE 174 n 180 PHE 174 A THR 175 n 181 THR 175 A VAL 176 n 182 VAL 176 A PHE 177 n 183 PHE 177 A SER 178 n 184 SER 178 A ASP 179 n 185 ASP 179 A PHE 180 n 186 PHE 180 A LEU 181 n 187 LEU 181 A THR 182 n 188 THR 182 A TYR 183 n 189 TYR 183 A LYS 184 n 190 LYS 184 A SER 185 n 191 SER 185 A GLY 186 n 192 GLY 186 A VAL 187 n 193 VAL 187 A TYR 188 n 194 TYR 188 A LYS 189 n 195 LYS 189 A HIS 190 n 196 HIS 190 A GLU 191 n 197 GLU 191 A ALA 192 n 198 ALA 192 A GLY 193 n 199 GLY 193 A ASP 194 n 200 ASP 194 A VAL 195 n 201 VAL 195 A MET 196 n 202 MET 196 A GLY 197 n 203 GLY 197 A GLY 198 n 204 GLY 198 A HIS 199 n 205 HIS 199 A ALA 200 n 206 ALA 200 A ILE 201 n 207 ILE 201 A ARG 202 n 208 ARG 202 A ILE 203 n 209 ILE 203 A LEU 204 n 210 LEU 204 A GLY 205 n 211 GLY 205 A TRP 206 n 212 TRP 206 A GLY 207 n 213 GLY 207 A ILE 208 n 214 ILE 208 A GLU 209 n 215 GLU 209 A ASN 210 n 216 ASN 210 A GLY 211 n 217 GLY 211 A VAL 212 n 218 VAL 212 A PRO 213 n 219 PRO 213 A TYR 214 n 220 TYR 214 A TRP 215 n 221 TRP 215 A LEU 216 n 222 LEU 216 A VAL 217 n 223 VAL 217 A ALA 218 n 224 ALA 218 A ASN 219 n 225 ASN 219 A SER 220 n 226 SER 220 A TRP 221 n 227 TRP 221 A ASN 222 n 228 ASN 222 A ALA 223 n 229 ALA 223 A ASP 224 n 230 ASP 224 A TRP 225 n 231 TRP 225 A GLY 226 n 232 GLY 226 A ASP 227 n 233 ASP 227 A ASN 228 n 234 ASN 228 A GLY 229 n 235 GLY 229 A PHE 230 n 236 PHE 230 A PHE 231 n 237 PHE 231 A LYS 232 n 238 LYS 232 A ILE 233 n 239 ILE 233 A LEU 234 n 240 LEU 234 A ARG 235 n 241 ARG 235 A GLY 236 n 242 GLY 236 A GLU 237 n 243 GLU 237 A ASN 238 n 244 ASN 238 A HIS 239 n 245 HIS 239 A CYS 240 n 246 CYS 240 A GLY 241 n 247 GLY 241 A ILE 242 n 248 ILE 242 A GLU 243 n 249 GLU 243 A SER 244 n 250 SER 244 A GLU 245 n 251 GLU 245 A ILE 246 n 252 ILE 246 A VAL 247 n 253 VAL 247 A ALA 248 n 254 ALA 248 A GLY 249 n 255 GLY 249 A ILE 250 n 256 ILE 250 A PRO 251 n 257 PRO 251 A ARG 252 n 258 ARG 252 A THR 253 n 259 THR 253 A n 260 254 A n 1 -5 B n 2 -4 B n 3 -3 B n 4 -2 B n 5 -1 B n 6 0 B LEU 1 n 7 LEU 1 B PRO 2 n 8 PRO 2 B GLU 3 n 9 GLU 3 B SER 4 n 10 SER 4 B PHE 5 n 11 PHE 5 B ASP 6 n 12 ASP 6 B ALA 7 n 13 ALA 7 B ARG 8 n 14 ARG 8 B GLU 9 n 15 GLU 9 B GLN 10 n 16 GLN 10 B TRP 11 n 17 TRP 11 B SER 12 n 18 SER 12 B ASN 13 n 19 ASN 13 B CYS 14 n 20 CYS 14 B PRO 15 n 21 PRO 15 B THR 16 n 22 THR 16 B ILE 17 n 23 ILE 17 B ALA 18 n 24 ALA 18 B GLN 19 n 25 GLN 19 B ILE 20 n 26 ILE 20 B ARG 21 n 27 ARG 21 B ASP 22 n 28 ASP 22 B GLN 23 n 29 GLN 23 B GLY 24 n 30 GLY 24 B SER 25 n 31 SER 25 B CYS 26 n 32 CYS 26 B GLY 27 n 33 GLY 27 B SER 28 n 34 SER 28 B CYS 29 n 35 CYS 29 B TRP 30 n 36 TRP 30 B ALA 31 n 37 ALA 31 B PHE 32 n 38 PHE 32 B GLY 33 n 39 GLY 33 B ALA 34 n 40 ALA 34 B VAL 35 n 41 VAL 35 B GLU 36 n 42 GLU 36 B ALA 37 n 43 ALA 37 B MET 38 n 44 MET 38 B SER 39 n 45 SER 39 B ASP 40 n 46 ASP 40 B ARG 41 n 47 ARG 41 B ILE 42 n 48 ILE 42 B CYS 43 n 49 CYS 43 B ILE 44 n 50 ILE 44 B HIS 45 n 51 HIS 45 B THR 46 n 52 THR 46 B ASN 47 n 53 ASN 47 B GLY 48 n 54 GLY 48 B ARG 49 n 55 ARG 49 B VAL 50 n 56 VAL 50 B ASN 51 n 57 ASN 51 B VAL 52 n 58 VAL 52 B GLU 53 n 59 GLU 53 B VAL 54 n 60 VAL 54 B SER 55 n 61 SER 55 B ALA 56 n 62 ALA 56 B GLU 57 n 63 GLU 57 B ASP 58 n 64 ASP 58 B LEU 59 n 65 LEU 59 B LEU 60 n 66 LEU 60 B THR 61 n 67 THR 61 B CYS 62 n 68 CYS 62 B CYS 63 n 69 CYS 63 B GLY 64 n 70 GLY 64 B ILE 65 n 71 ILE 65 B GLN 66 n 72 GLN 66 B CYS 67 n 73 CYS 67 B GLY 68 n 74 GLY 68 B ASP 69 n 75 ASP 69 B GLY 70 n 76 GLY 70 B CYS 71 n 77 CYS 71 B ASN 72 n 78 ASN 72 B GLY 73 n 79 GLY 73 B GLY 74 n 80 GLY 74 B TYR 75 n 81 TYR 75 B PRO 76 n 82 PRO 76 B SER 77 n 83 SER 77 B GLY 78 n 84 GLY 78 B ALA 79 n 85 ALA 79 B TRP 80 n 86 TRP 80 B ASN 81 n 87 ASN 81 B PHE 82 n 88 PHE 82 B TRP 83 n 89 TRP 83 B THR 84 n 90 THR 84 B ARG 85 n 91 ARG 85 B LYS 86 n 92 LYS 86 B GLY 87 n 93 GLY 87 B LEU 88 n 94 LEU 88 B VAL 89 n 95 VAL 89 B SER 90 n 96 SER 90 B GLY 91 n 97 GLY 91 B GLY 92 n 98 GLY 92 B VAL 93 n 99 VAL 93 B TYR 94 n 100 TYR 94 B ASN 95 n 101 ASN 95 B SER 96 n 102 SER 96 B HIS 97 n 103 HIS 97 B ILE 98 n 104 ILE 98 B GLY 99 n 105 GLY 99 B CYS 100 n 106 CYS 100 B LEU 101 n 107 LEU 101 B PRO 102 n 108 PRO 102 B TYR 103 n 109 TYR 103 B THR 104 n 110 THR 104 B ILE 105 n 111 ILE 105 B PRO 106 n 112 PRO 106 B PRO 107 n 113 PRO 107 B CYS 108 n 114 CYS 108 B GLU 109 n 115 GLU 109 B HIS 110 n 116 HIS 110 B HIS 111 n 117 HIS 111 B VAL 112 n 118 VAL 112 B ASN 113 n 119 ASN 113 B GLY 114 n 120 GLY 114 B ALA 115 n 121 ALA 115 B ARG 116 n 122 ARG 116 B PRO 117 n 123 PRO 117 B PRO 118 n 124 PRO 118 B CYS 119 n 125 CYS 119 B THR 120 n 126 THR 120 B GLY 121 n 127 GLY 121 B GLU 122 n 128 GLU 122 B GLY 123 n 129 GLY 123 B ASP 124 n 130 ASP 124 B THR 125 n 131 THR 125 B PRO 126 n 132 PRO 126 B LYS 127 n 133 LYS 127 B CYS 128 n 134 CYS 128 B ASN 129 n 135 ASN 129 B LYS 130 n 136 LYS 130 B MET 131 n 137 MET 131 B CYS 132 n 138 CYS 132 B GLU 133 n 139 GLU 133 B ALA 134 n 140 ALA 134 B GLY 135 n 141 GLY 135 B TYR 136 n 142 TYR 136 B SER 137 n 143 SER 137 B THR 138 n 144 THR 138 B SER 139 n 145 SER 139 B TYR 140 n 146 TYR 140 B LYS 141 n 147 LYS 141 B GLU 142 n 148 GLU 142 B ASP 143 n 149 ASP 143 B LYS 144 n 150 LYS 144 B HIS 145 n 151 HIS 145 B TYR 146 n 152 TYR 146 B GLY 147 n 153 GLY 147 B TYR 148 n 154 TYR 148 B THR 149 n 155 THR 149 B SER 150 n 156 SER 150 B TYR 151 n 157 TYR 151 B SER 152 n 158 SER 152 B VAL 153 n 159 VAL 153 B SER 154 n 160 SER 154 B ASP 155 n 161 ASP 155 B SER 156 n 162 SER 156 B GLU 157 n 163 GLU 157 B LYS 158 n 164 LYS 158 B GLU 159 n 165 GLU 159 B ILE 160 n 166 ILE 160 B MET 161 n 167 MET 161 B ALA 162 n 168 ALA 162 B GLU 163 n 169 GLU 163 B ILE 164 n 170 ILE 164 B TYR 165 n 171 TYR 165 B LYS 166 n 172 LYS 166 B ASN 167 n 173 ASN 167 B GLY 168 n 174 GLY 168 B PRO 169 n 175 PRO 169 B VAL 170 n 176 VAL 170 B GLU 171 n 177 GLU 171 B GLY 172 n 178 GLY 172 B ALA 173 n 179 ALA 173 B PHE 174 n 180 PHE 174 B THR 175 n 181 THR 175 B VAL 176 n 182 VAL 176 B PHE 177 n 183 PHE 177 B SER 178 n 184 SER 178 B ASP 179 n 185 ASP 179 B PHE 180 n 186 PHE 180 B LEU 181 n 187 LEU 181 B THR 182 n 188 THR 182 B TYR 183 n 189 TYR 183 B LYS 184 n 190 LYS 184 B SER 185 n 191 SER 185 B GLY 186 n 192 GLY 186 B VAL 187 n 193 VAL 187 B TYR 188 n 194 TYR 188 B LYS 189 n 195 LYS 189 B HIS 190 n 196 HIS 190 B GLU 191 n 197 GLU 191 B ALA 192 n 198 ALA 192 B GLY 193 n 199 GLY 193 B ASP 194 n 200 ASP 194 B VAL 195 n 201 VAL 195 B MET 196 n 202 MET 196 B GLY 197 n 203 GLY 197 B GLY 198 n 204 GLY 198 B HIS 199 n 205 HIS 199 B ALA 200 n 206 ALA 200 B ILE 201 n 207 ILE 201 B ARG 202 n 208 ARG 202 B ILE 203 n 209 ILE 203 B LEU 204 n 210 LEU 204 B GLY 205 n 211 GLY 205 B TRP 206 n 212 TRP 206 B GLY 207 n 213 GLY 207 B ILE 208 n 214 ILE 208 B GLU 209 n 215 GLU 209 B ASN 210 n 216 ASN 210 B GLY 211 n 217 GLY 211 B VAL 212 n 218 VAL 212 B PRO 213 n 219 PRO 213 B TYR 214 n 220 TYR 214 B TRP 215 n 221 TRP 215 B LEU 216 n 222 LEU 216 B VAL 217 n 223 VAL 217 B ALA 218 n 224 ALA 218 B ASN 219 n 225 ASN 219 B SER 220 n 226 SER 220 B TRP 221 n 227 TRP 221 B ASN 222 n 228 ASN 222 B ALA 223 n 229 ALA 223 B ASP 224 n 230 ASP 224 B TRP 225 n 231 TRP 225 B GLY 226 n 232 GLY 226 B ASP 227 n 233 ASP 227 B ASN 228 n 234 ASN 228 B GLY 229 n 235 GLY 229 B PHE 230 n 236 PHE 230 B PHE 231 n 237 PHE 231 B LYS 232 n 238 LYS 232 B ILE 233 n 239 ILE 233 B LEU 234 n 240 LEU 234 B ARG 235 n 241 ARG 235 B GLY 236 n 242 GLY 236 B GLU 237 n 243 GLU 237 B ASN 238 n 244 ASN 238 B HIS 239 n 245 HIS 239 B CYS 240 n 246 CYS 240 B GLY 241 n 247 GLY 241 B ILE 242 n 248 ILE 242 B GLU 243 n 249 GLU 243 B SER 244 n 250 SER 244 B GLU 245 n 251 GLU 245 B ILE 246 n 252 ILE 246 B VAL 247 n 253 VAL 247 B ALA 248 n 254 ALA 248 B GLY 249 n 255 GLY 249 B ILE 250 n 256 ILE 250 B PRO 251 n 257 PRO 251 B ARG 252 n 258 ARG 252 B THR 253 n 259 THR 253 B n 260 254 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CB GLU 122 A CB GLU 128 0 Y 1 A CG GLU 122 A CG GLU 128 0 Y 1 A CD GLU 122 A CD GLU 128 0 Y 1 A OE1 GLU 122 A OE1 GLU 128 0 Y 1 A OE2 GLU 122 A OE2 GLU 128 0 Y 1 A CG LYS 127 A CG LYS 133 0 Y 1 A CD LYS 127 A CD LYS 133 0 Y 1 A CE LYS 127 A CE LYS 133 0 Y 1 A NZ LYS 127 A NZ LYS 133 0 Y 1 A CG GLU 142 A CG GLU 148 0 Y 1 A CD GLU 142 A CD GLU 148 0 Y 1 A OE1 GLU 142 A OE1 GLU 148 0 Y 1 A OE2 GLU 142 A OE2 GLU 148 0 Y 1 A CG LYS 158 A CG LYS 164 0 Y 1 A CD LYS 158 A CD LYS 164 0 Y 1 A CE LYS 158 A CE LYS 164 0 Y 1 A NZ LYS 158 A NZ LYS 164 0 Y 1 B CB GLU 122 B CB GLU 128 0 Y 1 B CG GLU 122 B CG GLU 128 0 Y 1 B CD GLU 122 B CD GLU 128 0 Y 1 B OE1 GLU 122 B OE1 GLU 128 0 Y 1 B OE2 GLU 122 B OE2 GLU 128 0 Y 1 B CG LYS 127 B CG LYS 133 0 Y 1 B CD LYS 127 B CD LYS 133 0 Y 1 B CE LYS 127 B CE LYS 133 0 Y 1 B NZ LYS 127 B NZ LYS 133 0 Y 1 B CG LYS 158 B CG LYS 164 0 Y 1 B CD LYS 158 B CD LYS 164 0 Y 1 B CE LYS 158 B CE LYS 164 0 Y 1 B NZ LYS 158 B NZ LYS 164 0 Y 1 B CG LYS 184 B CG LYS 190 0 Y 1 B CD LYS 184 B CD LYS 190 0 Y 1 B CE LYS 184 B CE LYS 190 0 Y 1 B NZ LYS 184 B NZ LYS 190 0 Y 1 B CG ASP 194 B CG ASP 200 0 Y 1 B OD1 ASP 194 B OD1 ASP 200 0 Y 1 B OD2 ASP 194 B OD2 ASP 200 0 Y 1 A PHE -5 A PHE 1 1 Y 1 A SER -4 A SER 2 1 Y 1 A GLU -3 A GLU 3 1 Y 1 A ASP -2 A ASP 4 1 Y 1 A ILE -1 A ILE 5 1 Y 1 A ASN 0 A ASN 6 1 Y 1 A GLN 254 A GLN 260 1 Y 1 B PHE -5 B PHE 1 1 Y 1 B SER -4 B SER 2 1 Y 1 B GLU -3 B GLU 3 1 Y 1 B ASP -2 B ASP 4 1 Y 1 B ILE -1 B ILE 5 1 Y 1 B ASN 0 B ASN 6 1 Y 1 B GLN 254 B GLN 260 1 Y 1 A SER 96 11.99 1 B GLY 91 10.25 1 A PHE 32 0.078 SIDE CHAIN 1 A ARG 85 0.081 SIDE CHAIN 1 A TYR 94 0.097 SIDE CHAIN 1 A TYR 103 0.081 SIDE CHAIN 1 A TYR 136 0.105 SIDE CHAIN 1 A TYR 140 0.066 SIDE CHAIN 1 A ARG 202 0.105 SIDE CHAIN 1 A TYR 214 0.101 SIDE CHAIN 1 B TYR 75 0.081 SIDE CHAIN 1 B TYR 151 0.079 SIDE CHAIN 1 B TYR 214 0.075 SIDE CHAIN 1 35.05 2.20 113.40 148.45 A A A CA CB CG LYS LYS LYS 127 127 127 N 1 -15.47 1.20 123.30 107.83 A A A OE1 CD OE2 GLU GLU GLU 142 142 142 N 1 14.94 2.00 118.30 133.24 A A A CG CD OE2 GLU GLU GLU 142 142 142 N 1 A A CB CG LYS LYS 127 127 -0.712 0.027 1.521 0.809 N 1 B B CD OE2 GLU GLU 122 122 0.084 0.011 1.252 1.336 N 1 A TYR 94 -34.97 129.33 1 A ASN 95 44.53 24.75 1 A ASP 155 -59.84 75.89 1 A PRO 169 -41.00 152.86 1 A SER 178 -23.90 -53.34 1 A SER 185 179.91 168.71 1 A GLU 191 -133.19 -45.66 1 A ASN 210 60.40 62.01 1 A SER 220 -103.12 40.50 1 A ASN 222 62.14 -179.96 1 A LEU 234 -36.49 130.58 1 A GLU 237 -106.51 50.30 1 A ASN 238 38.41 26.99 1 B CYS 14 -113.51 79.48 1 B ASN 95 59.85 19.74 1 B CYS 100 -68.75 -71.57 1 B GLU 122 -43.43 106.42 1 B LYS 130 -85.67 37.60 1 B ASP 155 -63.52 69.69 1 B ASN 167 -140.88 -12.39 1 B PRO 169 -40.38 153.86 1 B LYS 184 -141.00 -40.26 1 B GLU 191 -91.85 -96.79 1 B ASN 222 66.91 178.60 1 B LEU 234 -45.50 157.20 1 B ASN 238 39.33 32.62 1 B ALA 248 -165.58 -166.56 21.5 RESIDUE ASN 222 OF BOTH CHAINS HAS PHI-PSI ANGLES OUTSIDE THE NORMALLY PERMITTED RANGE BECAUSE ITS SIDE CHAIN OXYGEN ATOM IS INVOLVED IN A HYDROGEN BOND WITH THE ADJACENT MAIN-CHAIN N-H 223. 0.175 0.175 2.2 8.0 23373 93.9 1 2. 0.22 2.2 8.0 190 4058 0 0 3868 0.012 1.3 2.2 20.0 1CPJ 24886 0.095 1 90.7 data collection SDMS model building X-PLOR 3.0 refinement X-PLOR 3.0 data reduction SDMS phasing X-PLOR 3.0 CRYSTAL STRUCTURES OF RECOMBINANT RAT CATHEPSIN B AND A CATHEPSIN B-INHIBITOR COMPLEX: IMPLICATIONS FOR STRUCTURE-BASED INHIBITOR DESIGN 1 N N 1 N N 2 N N 2 N N MTRIX THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED SECOND. APPLIED TO TRANSFORMED TO MTRIX RESIDUES RESIDUES RMSD M1 A 1 .. A 253 B 1 .. B 253 0.457 A CYS 29 A CYS 35 HELX_P A THR 46 A THR 52 1 3 18 A ALA 56 A ALA 62 HELX_P A CYS 62 A CYS 68 1 4 7 A PRO 76 A PRO 82 HELX_P A ARG 85 A ARG 91 1 6 10 A GLU 157 A GLU 163 HELX_P A ASN 167 A ASN 173 1 7 11 B CYS 29 B CYS 35 HELX_P B HIS 45 B HIS 51 1 12 17 B ALA 56 B ALA 62 HELX_P B CYS 62 B CYS 68 1 13 7 B PRO 76 B PRO 82 HELX_P B LYS 86 B LYS 92 1 15 11 B GLU 157 B GLU 163 HELX_P B ASN 167 B ASN 173 1 17 11 disulf 2.033 A CYS 14 A SG CYS 20 1_555 A CYS 43 A SG CYS 49 1_555 disulf 2.026 A CYS 26 A SG CYS 32 1_555 A CYS 71 A SG CYS 77 1_555 disulf 2.030 A CYS 62 A SG CYS 68 1_555 A CYS 128 A SG CYS 134 1_555 disulf 2.043 A CYS 63 A SG CYS 69 1_555 A CYS 67 A SG CYS 73 1_555 disulf 2.026 A CYS 100 A SG CYS 106 1_555 A CYS 132 A SG CYS 138 1_555 disulf 2.024 A CYS 108 A SG CYS 114 1_555 A CYS 119 A SG CYS 125 1_555 disulf 2.061 B CYS 14 B SG CYS 20 1_555 B CYS 43 B SG CYS 49 1_555 disulf 2.022 B CYS 26 B SG CYS 32 1_555 B CYS 71 B SG CYS 77 1_555 disulf 2.037 B CYS 62 B SG CYS 68 1_555 B CYS 128 B SG CYS 134 1_555 disulf 2.032 B CYS 63 B SG CYS 69 1_555 B CYS 67 B SG CYS 73 1_555 disulf 2.035 B CYS 100 B SG CYS 106 1_555 B CYS 132 B SG CYS 138 1_555 disulf 2.024 B CYS 108 B SG CYS 114 1_555 B CYS 119 B SG CYS 125 1_555 HYDROLASE THIOL PROTEASE, HYDROLASE given 0.633800 0.738600 0.229700 0.739400 -0.665700 0.100200 0.226900 0.106400 -0.968100 -52.75100 88.13200 93.84400 CATB_RAT UNP 1 1 P00787 MWWSLIPLSCLLALTSAHDKPSSHPLSDDMINYINKQNTTWQAGRNFYNVDISYLKKLCGTVLGGPNLPERVGFSEDINL PESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWN FWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGSRPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIM AEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNVDWGDNGFFKILRGENHCG IESEIVAGIPRTQQYWGRF 74 333 1CPJ -5 254 P00787 A 1 1 260 74 333 1CPJ -5 254 P00787 B 1 1 260 1 SER engineered mutation ALA 115 1CPJ A P00787 UNP 194 121 1 VAL cloning artifact ALA 223 1CPJ A P00787 UNP 302 229 2 SER engineered mutation ALA 115 1CPJ B P00787 UNP 194 121 2 VAL cloning artifact ALA 223 1CPJ B P00787 UNP 302 229 6 4 6 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 146 A TYR 152 A VAL 153 A VAL 159 A ILE 246 A ILE 252 A ARG 252 A ARG 258 A VAL 170 A VAL 176 A SER 178 A SER 184 A ASP 194 A ASP 200 A GLU 209 A GLU 215 A VAL 212 A VAL 218 A ASN 219 A ASN 225 A GLY 229 A GLY 235 A ARG 235 A ARG 241 A PHE 5 A PHE 11 A ALA 7 A ALA 13 A ASP 194 A ASP 200 A GLU 209 A GLU 215 A VAL 212 A VAL 218 A ASN 219 A ASN 225 A GLY 229 A GLY 235 A ARG 235 A ARG 241 B TYR 146 B TYR 152 B VAL 153 B VAL 159 B ILE 246 B ILE 252 B ARG 252 B ARG 258 B VAL 170 B VAL 176 B SER 178 B SER 184 B ASP 194 B ASP 200 B GLU 209 B GLU 215 B VAL 212 B VAL 218 B ASN 219 B ASN 225 B GLY 229 B GLY 235 B ARG 235 B ARG 241 B PHE 5 B PHE 11 B ALA 7 B ALA 13 B ASP 194 B ASP 200 B GLU 209 B GLU 215 B VAL 212 B VAL 218 B ASN 219 B ASN 225 B GLY 229 B GLY 235 B ARG 235 B ARG 241 ACTIVE SITE RESIDUES FOR RAT CATHEPSIN B Author 3 A CYS 29 A CYS 35 3 1_555 A HIS 199 A HIS 205 3 1_555 A ASN 219 A ASN 225 3 1_555 4 P 1 21 1