0.020912
0.000000
0.000000
0.000000
0.013776
0.000000
0.000000
0.000000
0.029138
0.00000
0.00000
0.00000
Tahirov, T.H.
Misaki, S.
Meyer, T.E.
Cusanovich, M.A.
Higuchi, Y.
Yasuoka, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
47.820
72.590
34.320
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
C
Y
141
N
C
Y
142
N
C
Y
143
N
C
Y
144
N
C
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
C
Y
158
N
C
Y
159
N
C
Y
160
N
C
Y
161
N
C
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
Y
175
N
N
N
176
N
N
Y
177
N
N
N
178
N
N
N
179
N
FE
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
Y
217
N
C
Y
218
N
N
Y
219
N
C
Y
220
N
C
Y
221
N
N
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
S
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
N
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
S
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
N
370
N
O
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
R
C
N
384
N
O
N
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
N
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
N
434
N
O
N
435
N
O
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
N
C
N
452
N
C
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
Y
141
N
doub
Y
142
N
sing
Y
143
N
sing
N
144
N
sing
Y
145
N
doub
N
146
N
sing
Y
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
sing
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
Y
222
N
sing
Y
223
N
doub
Y
224
N
doub
N
225
N
sing
Y
226
N
sing
N
227
N
sing
Y
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
sing
Y
408
N
doub
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
Y
427
N
doub
Y
428
N
sing
Y
429
N
sing
N
430
N
sing
Y
431
N
doub
N
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
259
467
479
10.1006/jmbi.1996.0333
8676382
High-resolution crystal structures of two polymorphs of cytochrome c' from the purple phototrophic bacterium rhodobacter capsulatus.
1996
10.2210/pdb1cpq/pdb
pdb_00001cpq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
283
1
IMAGE PLATE
1994-04-26
FUJI
Y
M
x-ray
1
1.0
1.0
BL-6A
Photon Factory
1.0
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
13154.733
CYTOCHROME C'
1
nat
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
1
syn
non-polymer
18.015
water
116
nat
water
no
no
ADTKEVLEAREAYFKSLGGSMKAMTGVAKAFDAEAAKVEAAKLEKILATDVAPLFPAGTSSTDLPGQTEAKAAIWANMDD
FGAKGKAMHEAGGAVIAAANAGDGAAFGAALQKLGGTCKACHDDYREED
ADTKEVLEAREAYFKSLGGSMKAMTGVAKAFDAEAAKVEAAKLEKILATDVAPLFPAGTSSTDLPGQTEAKAAIWANMDD
FGAKGKAMHEAGGAVIAAANAGDGAAFGAALQKLGGTCKACHDDYREED
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
STRAIN M110 WAS DERIVED FROM THE WILD TYPE GENETIC STRAIN ST. LOUIS. STRAIN M110 DIFFERS FROM STRAIN SP7 IN 12 RESIDUES.
Rhodobacter
sample
1061
Rhodobacter capsulatus
M110
1
2.26
42.
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_conn
struct_conn_type
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
1996-12-07
1
1
2008-03-03
1
2
2011-07-13
1
3
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1995-08-14
REL
REL
HEM
PROTOPORPHYRIN IX CONTAINING FE
HOH
water
RHODOSPIRILLUM RUBRUM CYTOCHROME C
Other
experimental model
HEM
1
2
HEM
HEM
130
A
HOH
1
3
HOH
HOH
131
A
HOH
2
3
HOH
HOH
132
A
HOH
3
3
HOH
HOH
133
A
HOH
4
3
HOH
HOH
134
A
HOH
5
3
HOH
HOH
135
A
HOH
6
3
HOH
HOH
136
A
HOH
7
3
HOH
HOH
137
A
HOH
8
3
HOH
HOH
138
A
HOH
9
3
HOH
HOH
139
A
HOH
10
3
HOH
HOH
140
A
HOH
11
3
HOH
HOH
141
A
HOH
12
3
HOH
HOH
142
A
HOH
13
3
HOH
HOH
143
A
HOH
14
3
HOH
HOH
144
A
HOH
15
3
HOH
HOH
145
A
HOH
16
3
HOH
HOH
146
A
HOH
17
3
HOH
HOH
147
A
HOH
18
3
HOH
HOH
148
A
HOH
19
3
HOH
HOH
149
A
HOH
20
3
HOH
HOH
150
A
HOH
21
3
HOH
HOH
151
A
HOH
22
3
HOH
HOH
152
A
HOH
23
3
HOH
HOH
153
A
HOH
24
3
HOH
HOH
154
A
HOH
25
3
HOH
HOH
155
A
HOH
26
3
HOH
HOH
156
A
HOH
27
3
HOH
HOH
157
A
HOH
28
3
HOH
HOH
158
A
HOH
29
3
HOH
HOH
159
A
HOH
30
3
HOH
HOH
160
A
HOH
31
3
HOH
HOH
161
A
HOH
32
3
HOH
HOH
162
A
HOH
33
3
HOH
HOH
163
A
HOH
34
3
HOH
HOH
164
A
HOH
35
3
HOH
HOH
165
A
HOH
36
3
HOH
HOH
166
A
HOH
37
3
HOH
HOH
167
A
HOH
38
3
HOH
HOH
168
A
HOH
39
3
HOH
HOH
169
A
HOH
40
3
HOH
HOH
170
A
HOH
41
3
HOH
HOH
171
A
HOH
42
3
HOH
HOH
172
A
HOH
43
3
HOH
HOH
173
A
HOH
44
3
HOH
HOH
174
A
HOH
45
3
HOH
HOH
175
A
HOH
46
3
HOH
HOH
176
A
HOH
47
3
HOH
HOH
177
A
HOH
48
3
HOH
HOH
178
A
HOH
49
3
HOH
HOH
179
A
HOH
50
3
HOH
HOH
180
A
HOH
51
3
HOH
HOH
181
A
HOH
52
3
HOH
HOH
182
A
HOH
53
3
HOH
HOH
183
A
HOH
54
3
HOH
HOH
184
A
HOH
55
3
HOH
HOH
185
A
HOH
56
3
HOH
HOH
186
A
HOH
57
3
HOH
HOH
187
A
HOH
58
3
HOH
HOH
188
A
HOH
59
3
HOH
HOH
189
A
HOH
60
3
HOH
HOH
190
A
HOH
61
3
HOH
HOH
191
A
HOH
62
3
HOH
HOH
192
A
HOH
63
3
HOH
HOH
193
A
HOH
64
3
HOH
HOH
194
A
HOH
65
3
HOH
HOH
195
A
HOH
66
3
HOH
HOH
196
A
HOH
67
3
HOH
HOH
197
A
HOH
68
3
HOH
HOH
198
A
HOH
69
3
HOH
HOH
199
A
HOH
70
3
HOH
HOH
200
A
HOH
71
3
HOH
HOH
201
A
HOH
72
3
HOH
HOH
202
A
HOH
73
3
HOH
HOH
203
A
HOH
74
3
HOH
HOH
204
A
HOH
75
3
HOH
HOH
205
A
HOH
76
3
HOH
HOH
206
A
HOH
77
3
HOH
HOH
207
A
HOH
78
3
HOH
HOH
208
A
HOH
79
3
HOH
HOH
209
A
HOH
80
3
HOH
HOH
210
A
HOH
81
3
HOH
HOH
211
A
HOH
82
3
HOH
HOH
212
A
HOH
83
3
HOH
HOH
213
A
HOH
84
3
HOH
HOH
214
A
HOH
85
3
HOH
HOH
215
A
HOH
86
3
HOH
HOH
216
A
HOH
87
3
HOH
HOH
217
A
HOH
88
3
HOH
HOH
218
A
HOH
89
3
HOH
HOH
219
A
HOH
90
3
HOH
HOH
220
A
HOH
91
3
HOH
HOH
221
A
HOH
92
3
HOH
HOH
222
A
HOH
93
3
HOH
HOH
223
A
HOH
94
3
HOH
HOH
224
A
HOH
95
3
HOH
HOH
225
A
HOH
96
3
HOH
HOH
226
A
HOH
97
3
HOH
HOH
227
A
HOH
98
3
HOH
HOH
228
A
HOH
99
3
HOH
HOH
229
A
HOH
100
3
HOH
HOH
230
A
HOH
101
3
HOH
HOH
231
A
HOH
102
3
HOH
HOH
232
A
HOH
103
3
HOH
HOH
233
A
HOH
104
3
HOH
HOH
234
A
HOH
105
3
HOH
HOH
235
A
HOH
106
3
HOH
HOH
236
A
HOH
107
3
HOH
HOH
237
A
HOH
108
3
HOH
HOH
238
A
HOH
109
3
HOH
HOH
239
A
HOH
110
3
HOH
HOH
240
A
HOH
111
3
HOH
HOH
241
A
HOH
112
3
HOH
HOH
242
A
HOH
113
3
HOH
HOH
243
A
HOH
114
3
HOH
HOH
244
A
HOH
115
3
HOH
HOH
245
A
HOH
116
3
HOH
HOH
246
A
ALA
1
n
1
ALA
1
A
ASP
2
n
2
ASP
2
A
THR
3
n
3
THR
3
A
LYS
4
n
4
LYS
4
A
GLU
5
n
5
GLU
5
A
VAL
6
n
6
VAL
6
A
LEU
7
n
7
LEU
7
A
GLU
8
n
8
GLU
8
A
ALA
9
n
9
ALA
9
A
ARG
10
n
10
ARG
10
A
GLU
11
n
11
GLU
11
A
ALA
12
n
12
ALA
12
A
TYR
13
n
13
TYR
13
A
PHE
14
n
14
PHE
14
A
LYS
15
n
15
LYS
15
A
SER
16
n
16
SER
16
A
LEU
17
n
17
LEU
17
A
GLY
18
n
18
GLY
18
A
GLY
19
n
19
GLY
19
A
SER
20
n
20
SER
20
A
MET
21
n
21
MET
21
A
LYS
22
n
22
LYS
22
A
ALA
23
n
23
ALA
23
A
MET
24
n
24
MET
24
A
THR
25
n
25
THR
25
A
GLY
26
n
26
GLY
26
A
VAL
27
n
27
VAL
27
A
ALA
28
n
28
ALA
28
A
LYS
29
n
29
LYS
29
A
ALA
30
n
30
ALA
30
A
PHE
31
n
31
PHE
31
A
ASP
32
n
32
ASP
32
A
ALA
33
n
33
ALA
33
A
GLU
34
n
34
GLU
34
A
ALA
35
n
35
ALA
35
A
ALA
36
n
36
ALA
36
A
LYS
37
n
37
LYS
37
A
VAL
38
n
38
VAL
38
A
GLU
39
n
39
GLU
39
A
ALA
40
n
40
ALA
40
A
ALA
41
n
41
ALA
41
A
LYS
42
n
42
LYS
42
A
LEU
43
n
43
LEU
43
A
GLU
44
n
44
GLU
44
A
LYS
45
n
45
LYS
45
A
ILE
46
n
46
ILE
46
A
LEU
47
n
47
LEU
47
A
ALA
48
n
48
ALA
48
A
THR
49
n
49
THR
49
A
ASP
50
n
50
ASP
50
A
VAL
51
n
51
VAL
51
A
ALA
52
n
52
ALA
52
A
PRO
53
n
53
PRO
53
A
LEU
54
n
54
LEU
54
A
PHE
55
n
55
PHE
55
A
PRO
56
n
56
PRO
56
A
ALA
57
n
57
ALA
57
A
GLY
58
n
58
GLY
58
A
THR
59
n
59
THR
59
A
SER
60
n
60
SER
60
A
SER
61
n
61
SER
61
A
THR
62
n
62
THR
62
A
ASP
63
n
63
ASP
63
A
LEU
64
n
64
LEU
64
A
PRO
65
n
65
PRO
65
A
GLY
66
n
66
GLY
66
A
GLN
67
n
67
GLN
67
A
THR
68
n
68
THR
68
A
GLU
69
n
69
GLU
69
A
ALA
70
n
70
ALA
70
A
LYS
71
n
71
LYS
71
A
ALA
72
n
72
ALA
72
A
ALA
73
n
73
ALA
73
A
ILE
74
n
74
ILE
74
A
TRP
75
n
75
TRP
75
A
ALA
76
n
76
ALA
76
A
ASN
77
n
77
ASN
77
A
MET
78
n
78
MET
78
A
ASP
79
n
79
ASP
79
A
ASP
80
n
80
ASP
80
A
PHE
81
n
81
PHE
81
A
GLY
82
n
82
GLY
82
A
ALA
83
n
83
ALA
83
A
LYS
84
n
84
LYS
84
A
GLY
85
n
85
GLY
85
A
LYS
86
n
86
LYS
86
A
ALA
87
n
87
ALA
87
A
MET
88
n
88
MET
88
A
HIS
89
n
89
HIS
89
A
GLU
90
n
90
GLU
90
A
ALA
91
n
91
ALA
91
A
GLY
92
n
92
GLY
92
A
GLY
93
n
93
GLY
93
A
ALA
94
n
94
ALA
94
A
VAL
95
n
95
VAL
95
A
ILE
96
n
96
ILE
96
A
ALA
97
n
97
ALA
97
A
ALA
98
n
98
ALA
98
A
ALA
99
n
99
ALA
99
A
ASN
100
n
100
ASN
100
A
ALA
101
n
101
ALA
101
A
GLY
102
n
102
GLY
102
A
ASP
103
n
103
ASP
103
A
GLY
104
n
104
GLY
104
A
ALA
105
n
105
ALA
105
A
ALA
106
n
106
ALA
106
A
PHE
107
n
107
PHE
107
A
GLY
108
n
108
GLY
108
A
ALA
109
n
109
ALA
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
GLN
112
n
112
GLN
112
A
LYS
113
n
113
LYS
113
A
LEU
114
n
114
LEU
114
A
GLY
115
n
115
GLY
115
A
GLY
116
n
116
GLY
116
A
THR
117
n
117
THR
117
A
CYS
118
n
118
CYS
118
A
LYS
119
n
119
LYS
119
A
ALA
120
n
120
ALA
120
A
CYS
121
n
121
CYS
121
A
HIS
122
n
122
HIS
122
A
ASP
123
n
123
ASP
123
A
ASP
124
n
124
ASP
124
A
TYR
125
n
125
TYR
125
A
ARG
126
n
126
ARG
126
A
GLU
127
n
127
GLU
127
A
GLU
128
n
128
GLU
128
A
ASP
129
n
129
ASP
129
A
author_defined_assembly
1
monomeric
A
HIS
122
A
NE2
HIS
122
1_555
A
HEM
130
B
FE
HEM
1_555
A
HEM
130
B
NA
HEM
1_555
96.0
A
HIS
122
A
NE2
HIS
122
1_555
A
HEM
130
B
FE
HEM
1_555
A
HEM
130
B
NB
HEM
1_555
91.8
A
HEM
130
B
NA
HEM
1_555
A
HEM
130
B
FE
HEM
1_555
A
HEM
130
B
NB
HEM
1_555
87.5
A
HIS
122
A
NE2
HIS
122
1_555
A
HEM
130
B
FE
HEM
1_555
A
HEM
130
B
NC
HEM
1_555
95.1
A
HEM
130
B
NA
HEM
1_555
A
HEM
130
B
FE
HEM
1_555
A
HEM
130
B
NC
HEM
1_555
168.7
A
HEM
130
B
NB
HEM
1_555
A
HEM
130
B
FE
HEM
1_555
A
HEM
130
B
NC
HEM
1_555
90.1
A
HIS
122
A
NE2
HIS
122
1_555
A
HEM
130
B
FE
HEM
1_555
A
HEM
130
B
ND
HEM
1_555
99.8
A
HEM
130
B
NA
HEM
1_555
A
HEM
130
B
FE
HEM
1_555
A
HEM
130
B
ND
HEM
1_555
91.7
A
HEM
130
B
NB
HEM
1_555
A
HEM
130
B
FE
HEM
1_555
A
HEM
130
B
ND
HEM
1_555
168.4
A
HEM
130
B
NC
HEM
1_555
A
HEM
130
B
FE
HEM
1_555
A
HEM
130
B
ND
HEM
1_555
88.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
HZ2
H2
LYS
HOH
119
190
1.32
1_555
4_556
1
A
THR
3
-26.62
-52.19
1
A
PHE
55
-118.26
56.31
1
A
GLU
128
-115.92
54.50
27.46
0.1500000
0.1500000
1.72
6.
8479
1
2.
MOLECULAR
RHODOSPIRILLUM RUBRUM CYTOCHROME C
0.15
1.72
6.
116
2066
43
0
1907
0.01
1.34
19.40
1.37
1.7
30.
1CPQ
11127
-3.
0.0710000
1
12.4
3.95
80.2
refinement
X-PLOR
data reduction
DENZO
data scaling
SCALEPACK
CYTOCHROME C' FROM RHODOPSEUDOMONAS CAPSULATA
1
N
N
2
N
N
3
N
N
A
THR
3
A
THR
3
HELX_P
A
LYS
29
A
LYS
29
1
1
27
A
ALA
33
A
ALA
33
HELX_P
A
ILE
46
A
ILE
46
1
2
14
A
ALA
73
A
ALA
73
HELX_P
A
ALA
76
A
ALA
76
5
3
4
A
MET
78
A
MET
78
HELX_P
A
ALA
101
A
ALA
101
1
4
24
A
GLY
104
A
GLY
104
HELX_P
A
TYR
125
A
TYR
125
1
5
22
covale
1.814
none
A
CYS
118
A
SG
CYS
118
1_555
A
HEM
130
B
CAB
HEM
1_555
covale
1.811
none
A
CYS
121
A
SG
CYS
121
1_555
A
HEM
130
B
CAC
HEM
1_555
metalc
2.009
A
HIS
122
A
NE2
HIS
122
1_555
A
HEM
130
B
FE
HEM
1_555
ELECTRON TRANSPORT
ELECTRON TRANSPORT, CYTOCHROME
CYCP_RHOCA
UNP
1
1
P00147
MRKILLALPVAALVLGSAAYAADTKEVLEAREAYFKSLGGSMKAMTGVAKAFDAEAAKVEAAKLEKILATDVAPLFPAGT
SSTDLPGQTEAKAAIWANMDDFGAKGKAMHDAGGAVIAAANAGDGAAFGAALQKLGGTCKACHDDYREED
22
150
1CPQ
1
129
P00147
A
1
1
129
1
ASP
variant
GLU
90
1CPQ
A
P00147
UNP
111
90
BINDING SITE FOR RESIDUE HEM A 130
A
HEM
130
Software
15
A
ARG
10
A
ARG
10
15
1_555
A
GLU
11
A
GLU
11
15
1_555
A
PHE
14
A
PHE
14
15
1_555
A
LYS
15
A
LYS
15
15
1_555
A
THR
68
A
THR
68
15
1_555
A
GLU
69
A
GLU
69
15
1_555
A
ILE
74
A
ILE
74
15
1_555
A
PHE
81
A
PHE
81
15
1_555
A
GLY
85
A
GLY
85
15
1_555
A
THR
117
A
THR
117
15
1_555
A
CYS
118
A
CYS
118
15
1_555
A
CYS
121
A
CYS
121
15
1_555
A
HIS
122
A
HIS
122
15
1_555
A
ARG
126
A
ARG
126
15
1_555
A
HOH
143
C
HOH
15
1_555
18
P 21 21 2