0.008929 0.000000 0.000000 0.000000 0.008929 0.000000 0.000000 0.000000 0.008929 0.00000 0.00000 0.00000 CIS PROLINE - PRO 54 CIS PROLINE - PRO 96 Sorensen, S.B. Raaschou-Nielsen, M. Mortensen, U. Remington, S.J. Breddam, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 90.00 112.000 112.000 112.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Am.Chem.Soc. JACSAT 0004 0002-7863 117 5944 5950 -1 Site-Directed Mutagenesis on (Serine) Carboxypeptidase Y from Yeast. The Significance of Thr 60 and met 398 in Hydrolysis and Aminolysis Reactions 1995 US Biochemistry BICHAW 0033 0006-2960 33 11106 2.8 Angstroms Structure of Yeast Serine Carboxypeptidase 1994 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 47239.293 SERINE CARBOXYPEPTIDASE 3.4.16.5 E65A, E145A 1 nat polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 3 man non-polymer 18.015 water 38 nat water no no KIKDPKILGIDPNVTQYTGYLDVEDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFALGPSSIGPDLKPIGN PYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEIL SHKDRNFNLTSVLIGNGLTDPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIYC NNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAV TDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVP FDVPENALSMVNEWIHGGFSL KIKDPKILGIDPNVTQYTGYLDVEDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFALGPSSIGPDLKPIGN PYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEIL SHKDRNFNLTSVLIGNGLTDPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIYC NNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAV TDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVP FDVPENALSMVNEWIHGGFSL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces sample 4932 Saccharomyces cerevisiae 2.48 50.35 pdbx_database_status struct_conf struct_conf_type chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_ref_seq_dif struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Derived calculations Other Data collection Database references Derived calculations Structure summary 1 0 1995-09-15 1 1 2008-03-03 1 2 2011-07-13 1 3 2017-11-29 1 4 2020-07-29 _pdbx_database_status.process_site _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_ref_seq_dif.details DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. STRANDS 1, 2, 3, 5, 6, 7, 8, 9, 10 AND 11 OF S1A AND S1B ARE IDENTICAL. Y BNL 1995-03-24 REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose HOH water NAG 871 2 NAG NAG 871 A NAG 1681 2 NAG NAG 1681 A NAG 3681 2 NAG NAG 3681 A HOH 450 3 HOH HOH 450 A HOH 451 3 HOH HOH 451 A HOH 452 3 HOH HOH 452 A HOH 453 3 HOH HOH 453 A HOH 454 3 HOH HOH 454 A HOH 455 3 HOH HOH 455 A HOH 456 3 HOH HOH 456 A HOH 457 3 HOH HOH 457 A HOH 458 3 HOH HOH 458 A HOH 459 3 HOH HOH 459 A HOH 460 3 HOH HOH 460 A HOH 461 3 HOH HOH 461 A HOH 462 3 HOH HOH 462 A HOH 463 3 HOH HOH 463 A HOH 464 3 HOH HOH 464 A HOH 465 3 HOH HOH 465 A HOH 466 3 HOH HOH 466 A HOH 467 3 HOH HOH 467 A HOH 468 3 HOH HOH 468 A HOH 469 3 HOH HOH 469 A HOH 470 3 HOH HOH 470 A HOH 471 3 HOH HOH 471 A HOH 472 3 HOH HOH 472 A HOH 473 3 HOH HOH 473 A HOH 474 3 HOH HOH 474 A HOH 475 3 HOH HOH 475 A HOH 476 3 HOH HOH 476 A HOH 477 3 HOH HOH 477 A HOH 478 3 HOH HOH 478 A HOH 479 3 HOH HOH 479 A HOH 480 3 HOH HOH 480 A HOH 481 3 HOH HOH 481 A HOH 482 3 HOH HOH 482 A HOH 483 3 HOH HOH 483 A HOH 484 3 HOH HOH 484 A HOH 485 3 HOH HOH 485 A HOH 486 3 HOH HOH 486 A HOH 487 3 HOH HOH 487 A LYS 1 n 1 LYS 1 A ILE 2 n 2 ILE 2 A LYS 3 n 3 LYS 3 A ASP 4 n 4 ASP 4 A PRO 5 n 5 PRO 5 A LYS 6 n 6 LYS 6 A ILE 7 n 7 ILE 7 A LEU 8 n 8 LEU 8 A GLY 9 n 9 GLY 9 A ILE 10 n 10 ILE 10 A ASP 11 n 11 ASP 11 A PRO 12 n 12 PRO 12 A ASN 13 n 13 ASN 13 A VAL 14 n 14 VAL 14 A THR 15 n 15 THR 15 A GLN 16 n 16 GLN 16 A TYR 17 n 17 TYR 17 A THR 18 n 18 THR 18 A GLY 19 n 19 GLY 19 A TYR 20 n 20 TYR 20 A LEU 21 n 21 LEU 21 A ASP 22 n 22 ASP 22 A VAL 23 n 23 VAL 23 A GLU 24 n 24 GLU 24 A ASP 25 n 25 ASP 25 A GLU 26 n 26 GLU 26 A ASP 27 n 27 ASP 27 A LYS 28 n 28 LYS 28 A HIS 29 n 29 HIS 29 A PHE 30 n 30 PHE 30 A PHE 31 n 31 PHE 31 A PHE 32 n 32 PHE 32 A TRP 33 n 33 TRP 33 A THR 34 n 34 THR 34 A PHE 35 n 35 PHE 35 A GLU 36 n 36 GLU 36 A SER 37 n 37 SER 37 A ARG 38 n 38 ARG 38 A ASN 39 n 39 ASN 39 A ASP 40 n 40 ASP 40 A PRO 41 n 41 PRO 41 A ALA 42 n 42 ALA 42 A LYS 43 n 43 LYS 43 A ASP 44 n 44 ASP 44 A PRO 45 n 45 PRO 45 A VAL 46 n 46 VAL 46 A ILE 47 n 47 ILE 47 A LEU 48 n 48 LEU 48 A TRP 49 n 49 TRP 49 A LEU 50 n 50 LEU 50 A ASN 51 n 51 ASN 51 A GLY 52 n 52 GLY 52 A GLY 53 n 53 GLY 53 A PRO 54 n 54 PRO 54 A GLY 55 n 55 GLY 55 A CYS 56 n 56 CYS 56 A SER 57 n 57 SER 57 A SER 58 n 58 SER 58 A LEU 59 n 59 LEU 59 A THR 60 n 60 THR 60 A GLY 61 n 61 GLY 61 A LEU 62 n 62 LEU 62 A PHE 63 n 63 PHE 63 A PHE 64 n 64 PHE 64 A ALA 65 n 65 ALA 65 A LEU 66 n 66 LEU 66 A GLY 67 n 67 GLY 67 A PRO 68 n 68 PRO 68 A SER 69 n 69 SER 69 A SER 70 n 70 SER 70 A ILE 71 n 71 ILE 71 A GLY 72 n 72 GLY 72 A PRO 73 n 73 PRO 73 A ASP 74 n 74 ASP 74 A LEU 75 n 75 LEU 75 A LYS 76 n 76 LYS 76 A PRO 77 n 77 PRO 77 A ILE 78 n 78 ILE 78 A GLY 79 n 79 GLY 79 A ASN 80 n 80 ASN 80 A PRO 81 n 81 PRO 81 A TYR 82 n 82 TYR 82 A SER 83 n 83 SER 83 A TRP 84 n 84 TRP 84 A ASN 85 n 85 ASN 85 A SER 86 n 86 SER 86 A ASN 87 n 87 ASN 87 A ALA 88 n 88 ALA 88 A THR 89 n 89 THR 89 A VAL 90 n 90 VAL 90 A ILE 91 n 91 ILE 91 A PHE 92 n 92 PHE 92 A LEU 93 n 93 LEU 93 A ASP 94 n 94 ASP 94 A GLN 95 n 95 GLN 95 A PRO 96 n 96 PRO 96 A VAL 97 n 97 VAL 97 A ASN 98 n 98 ASN 98 A VAL 99 n 99 VAL 99 A GLY 100 n 100 GLY 100 A PHE 101 n 101 PHE 101 A SER 102 n 102 SER 102 A TYR 103 n 103 TYR 103 A SER 104 n 104 SER 104 A GLY 105 n 105 GLY 105 A SER 106 n 106 SER 106 A SER 107 n 107 SER 107 A GLY 108 n 108 GLY 108 A VAL 109 n 109 VAL 109 A SER 110 n 110 SER 110 A ASN 111 n 111 ASN 111 A THR 112 n 112 THR 112 A VAL 113 n 113 VAL 113 A ALA 114 n 114 ALA 114 A ALA 115 n 115 ALA 115 A GLY 116 n 116 GLY 116 A LYS 117 n 117 LYS 117 A ASP 118 n 118 ASP 118 A VAL 119 n 119 VAL 119 A TYR 120 n 120 TYR 120 A ASN 121 n 121 ASN 121 A PHE 122 n 122 PHE 122 A LEU 123 n 123 LEU 123 A GLU 124 n 124 GLU 124 A LEU 125 n 125 LEU 125 A PHE 126 n 126 PHE 126 A PHE 127 n 127 PHE 127 A ASP 128 n 128 ASP 128 A GLN 129 n 129 GLN 129 A PHE 130 n 130 PHE 130 A PRO 131 n 131 PRO 131 A GLU 132 n 132 GLU 132 A TYR 133 n 133 TYR 133 A VAL 134 n 134 VAL 134 A ASN 135 n 135 ASN 135 A LYS 136 n 136 LYS 136 A GLY 137 n 137 GLY 137 A GLN 138 n 138 GLN 138 A ASP 139 n 139 ASP 139 A PHE 140 n 140 PHE 140 A HIS 141 n 141 HIS 141 A ILE 142 n 142 ILE 142 A ALA 143 n 143 ALA 143 A GLY 144 n 144 GLY 144 A ALA 145 n 145 ALA 145 A SER 146 n 146 SER 146 A TYR 147 n 147 TYR 147 A ALA 148 n 148 ALA 148 A GLY 149 n 149 GLY 149 A HIS 150 n 150 HIS 150 A TYR 151 n 151 TYR 151 A ILE 152 n 152 ILE 152 A PRO 153 n 153 PRO 153 A VAL 154 n 154 VAL 154 A PHE 155 n 155 PHE 155 A ALA 156 n 156 ALA 156 A SER 157 n 157 SER 157 A GLU 158 n 158 GLU 158 A ILE 159 n 159 ILE 159 A LEU 160 n 160 LEU 160 A SER 161 n 161 SER 161 A HIS 162 n 162 HIS 162 A LYS 163 n 163 LYS 163 A ASP 164 n 164 ASP 164 A ARG 165 n 165 ARG 165 A ASN 166 n 166 ASN 166 A PHE 167 n 167 PHE 167 A ASN 168 n 168 ASN 168 A LEU 169 n 169 LEU 169 A THR 170 n 170 THR 170 A SER 171 n 171 SER 171 A VAL 172 n 172 VAL 172 A LEU 173 n 173 LEU 173 A ILE 174 n 174 ILE 174 A GLY 175 n 175 GLY 175 A ASN 176 n 176 ASN 176 A GLY 177 n 177 GLY 177 A LEU 178 n 178 LEU 178 A THR 179 n 179 THR 179 A ASP 180 n 180 ASP 180 A PRO 181 n 181 PRO 181 A LEU 182 n 182 LEU 182 A THR 183 n 183 THR 183 A GLN 184 n 184 GLN 184 A TYR 185 n 185 TYR 185 A ASN 186 n 186 ASN 186 A TYR 187 n 187 TYR 187 A TYR 188 n 188 TYR 188 A GLU 189 n 189 GLU 189 A PRO 190 n 190 PRO 190 A MET 191 n 191 MET 191 A ALA 192 n 192 ALA 192 A CYS 193 n 193 CYS 193 A GLY 194 n 194 GLY 194 A GLU 195 n 195 GLU 195 A GLY 196 n 196 GLY 196 A GLY 197 n 197 GLY 197 A GLU 198 n 198 GLU 198 A PRO 199 n 199 PRO 199 A SER 200 n 200 SER 200 A VAL 201 n 201 VAL 201 A LEU 202 n 202 LEU 202 A PRO 203 n 203 PRO 203 A SER 204 n 204 SER 204 A GLU 205 n 205 GLU 205 A GLU 206 n 206 GLU 206 A CYS 207 n 207 CYS 207 A SER 208 n 208 SER 208 A ALA 209 n 209 ALA 209 A MET 210 n 210 MET 210 A GLU 211 n 211 GLU 211 A ASP 212 n 212 ASP 212 A SER 213 n 213 SER 213 A LEU 214 n 214 LEU 214 A GLU 215 n 215 GLU 215 A ARG 216 n 216 ARG 216 A CYS 217 n 217 CYS 217 A LEU 218 n 218 LEU 218 A GLY 219 n 219 GLY 219 A LEU 220 n 220 LEU 220 A ILE 221 n 221 ILE 221 A GLU 222 n 222 GLU 222 A SER 223 n 223 SER 223 A CYS 224 n 224 CYS 224 A TYR 225 n 225 TYR 225 A ASP 226 n 226 ASP 226 A SER 227 n 227 SER 227 A GLN 228 n 228 GLN 228 A SER 229 n 229 SER 229 A VAL 230 n 230 VAL 230 A TRP 231 n 231 TRP 231 A SER 232 n 232 SER 232 A CYS 233 n 233 CYS 233 A VAL 234 n 234 VAL 234 A PRO 235 n 235 PRO 235 A ALA 236 n 236 ALA 236 A THR 237 n 237 THR 237 A ILE 238 n 238 ILE 238 A TYR 239 n 239 TYR 239 A CYS 240 n 240 CYS 240 A ASN 241 n 241 ASN 241 A ASN 242 n 242 ASN 242 A ALA 243 n 243 ALA 243 A GLN 244 n 244 GLN 244 A LEU 245 n 245 LEU 245 A ALA 246 n 246 ALA 246 A PRO 247 n 247 PRO 247 A TYR 248 n 248 TYR 248 A GLN 249 n 249 GLN 249 A ARG 250 n 250 ARG 250 A THR 251 n 251 THR 251 A GLY 252 n 252 GLY 252 A ARG 253 n 253 ARG 253 A ASN 254 n 254 ASN 254 A VAL 255 n 255 VAL 255 A TYR 256 n 256 TYR 256 A ASP 257 n 257 ASP 257 A ILE 258 n 258 ILE 258 A ARG 259 n 259 ARG 259 A LYS 260 n 260 LYS 260 A ASP 261 n 261 ASP 261 A CYS 262 n 262 CYS 262 A GLU 263 n 263 GLU 263 A GLY 264 n 264 GLY 264 A GLY 265 n 265 GLY 265 A ASN 266 n 266 ASN 266 A LEU 267 n 267 LEU 267 A CYS 268 n 268 CYS 268 A TYR 269 n 269 TYR 269 A PRO 270 n 270 PRO 270 A THR 271 n 271 THR 271 A LEU 272 n 272 LEU 272 A GLN 273 n 273 GLN 273 A ASP 274 n 274 ASP 274 A ILE 275 n 275 ILE 275 A ASP 276 n 276 ASP 276 A ASP 277 n 277 ASP 277 A TYR 278 n 278 TYR 278 A LEU 279 n 279 LEU 279 A ASN 280 n 280 ASN 280 A GLN 281 n 281 GLN 281 A ASP 282 n 282 ASP 282 A TYR 283 n 283 TYR 283 A VAL 284 n 284 VAL 284 A LYS 285 n 285 LYS 285 A GLU 286 n 286 GLU 286 A ALA 287 n 287 ALA 287 A VAL 288 n 288 VAL 288 A GLY 289 n 289 GLY 289 A ALA 290 n 290 ALA 290 A GLU 291 n 291 GLU 291 A VAL 292 n 292 VAL 292 A ASP 293 n 293 ASP 293 A HIS 294 n 294 HIS 294 A TYR 295 n 295 TYR 295 A GLU 296 n 296 GLU 296 A SER 297 n 297 SER 297 A CYS 298 n 298 CYS 298 A ASN 299 n 299 ASN 299 A PHE 300 n 300 PHE 300 A ASP 301 n 301 ASP 301 A ILE 302 n 302 ILE 302 A ASN 303 n 303 ASN 303 A ARG 304 n 304 ARG 304 A ASN 305 n 305 ASN 305 A PHE 306 n 306 PHE 306 A LEU 307 n 307 LEU 307 A PHE 308 n 308 PHE 308 A ALA 309 n 309 ALA 309 A GLY 310 n 310 GLY 310 A ASP 311 n 311 ASP 311 A TRP 312 n 312 TRP 312 A MET 313 n 313 MET 313 A LYS 314 n 314 LYS 314 A PRO 315 n 315 PRO 315 A TYR 316 n 316 TYR 316 A HIS 317 n 317 HIS 317 A THR 318 n 318 THR 318 A ALA 319 n 319 ALA 319 A VAL 320 n 320 VAL 320 A THR 321 n 321 THR 321 A ASP 322 n 322 ASP 322 A LEU 323 n 323 LEU 323 A LEU 324 n 324 LEU 324 A ASN 325 n 325 ASN 325 A GLN 326 n 326 GLN 326 A ASP 327 n 327 ASP 327 A LEU 328 n 328 LEU 328 A PRO 329 n 329 PRO 329 A ILE 330 n 330 ILE 330 A LEU 331 n 331 LEU 331 A VAL 332 n 332 VAL 332 A TYR 333 n 333 TYR 333 A ALA 334 n 334 ALA 334 A GLY 335 n 335 GLY 335 A ASP 336 n 336 ASP 336 A LYS 337 n 337 LYS 337 A ASP 338 n 338 ASP 338 A PHE 339 n 339 PHE 339 A ILE 340 n 340 ILE 340 A CYS 341 n 341 CYS 341 A ASN 342 n 342 ASN 342 A TRP 343 n 343 TRP 343 A LEU 344 n 344 LEU 344 A GLY 345 n 345 GLY 345 A ASN 346 n 346 ASN 346 A LYS 347 n 347 LYS 347 A ALA 348 n 348 ALA 348 A TRP 349 n 349 TRP 349 A THR 350 n 350 THR 350 A ASP 351 n 351 ASP 351 A VAL 352 n 352 VAL 352 A LEU 353 n 353 LEU 353 A PRO 354 n 354 PRO 354 A TRP 355 n 355 TRP 355 A LYS 356 n 356 LYS 356 A TYR 357 n 357 TYR 357 A ASP 358 n 358 ASP 358 A GLU 359 n 359 GLU 359 A GLU 360 n 360 GLU 360 A PHE 361 n 361 PHE 361 A ALA 362 n 362 ALA 362 A SER 363 n 363 SER 363 A GLN 364 n 364 GLN 364 A LYS 365 n 365 LYS 365 A VAL 366 n 366 VAL 366 A ARG 367 n 367 ARG 367 A ASN 368 n 368 ASN 368 A TRP 369 n 369 TRP 369 A THR 370 n 370 THR 370 A ALA 371 n 371 ALA 371 A SER 372 n 372 SER 372 A ILE 373 n 373 ILE 373 A THR 374 n 374 THR 374 A ASP 375 n 375 ASP 375 A GLU 376 n 376 GLU 376 A VAL 377 n 377 VAL 377 A ALA 378 n 378 ALA 378 A GLY 379 n 379 GLY 379 A GLU 380 n 380 GLU 380 A VAL 381 n 381 VAL 381 A LYS 382 n 382 LYS 382 A SER 383 n 383 SER 383 A TYR 384 n 384 TYR 384 A LYS 385 n 385 LYS 385 A HIS 386 n 386 HIS 386 A PHE 387 n 387 PHE 387 A THR 388 n 388 THR 388 A TYR 389 n 389 TYR 389 A LEU 390 n 390 LEU 390 A ARG 391 n 391 ARG 391 A VAL 392 n 392 VAL 392 A PHE 393 n 393 PHE 393 A ASN 394 n 394 ASN 394 A GLY 395 n 395 GLY 395 A GLY 396 n 396 GLY 396 A HIS 397 n 397 HIS 397 A MET 398 n 398 MET 398 A VAL 399 n 399 VAL 399 A PRO 400 n 400 PRO 400 A PHE 401 n 401 PHE 401 A ASP 402 n 402 ASP 402 A VAL 403 n 403 VAL 403 A PRO 404 n 404 PRO 404 A GLU 405 n 405 GLU 405 A ASN 406 n 406 ASN 406 A ALA 407 n 407 ALA 407 A LEU 408 n 408 LEU 408 A SER 409 n 409 SER 409 A MET 410 n 410 MET 410 A VAL 411 n 411 VAL 411 A ASN 412 n 412 ASN 412 A GLU 413 n 413 GLU 413 A TRP 414 n 414 TRP 414 A ILE 415 n 415 ILE 415 A HIS 416 n 416 HIS 416 A GLY 417 n 417 GLY 417 A GLY 418 n 418 GLY 418 A PHE 419 n 419 PHE 419 A SER 420 n 420 SER 420 A LEU 421 n 421 LEU 421 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG LYS 1 A CG LYS 1 1 Y 1 A CD LYS 1 A CD LYS 1 1 Y 1 A CE LYS 1 A CE LYS 1 1 Y 1 A NZ LYS 1 A NZ LYS 1 1 Y 1 A CG1 ILE 2 A CG1 ILE 2 1 Y 1 A CG2 ILE 2 A CG2 ILE 2 1 Y 1 A CD1 ILE 2 A CD1 ILE 2 1 Y 1 A CG LYS 3 A CG LYS 3 1 Y 1 A CD LYS 3 A CD LYS 3 1 Y 1 A CE LYS 3 A CE LYS 3 1 Y 1 A NZ LYS 3 A NZ LYS 3 1 Y 1 A CG ASP 4 A CG ASP 4 1 Y 1 A OD1 ASP 4 A OD1 ASP 4 1 Y 1 A OD2 ASP 4 A OD2 ASP 4 1 Y 1 A CG LYS 6 A CG LYS 6 1 Y 1 A CD LYS 6 A CD LYS 6 1 Y 1 A CE LYS 6 A CE LYS 6 1 Y 1 A NZ LYS 6 A NZ LYS 6 1 Y 1 A CG1 ILE 7 A CG1 ILE 7 1 Y 1 A CG2 ILE 7 A CG2 ILE 7 1 Y 1 A CD1 ILE 7 A CD1 ILE 7 1 Y 1 A CG ASN 13 A CG ASN 13 1 Y 1 A OD1 ASN 13 A OD1 ASN 13 1 Y 1 A ND2 ASN 13 A ND2 ASN 13 1 Y 1 A CG1 VAL 14 A CG1 VAL 14 1 Y 1 A CG2 VAL 14 A CG2 VAL 14 1 Y 1 A OG1 THR 15 A OG1 THR 15 1 Y 1 A CG2 THR 15 A CG2 THR 15 1 Y 1 A CG GLN 16 A CG GLN 16 1 Y 1 A CD GLN 16 A CD GLN 16 1 Y 1 A OE1 GLN 16 A OE1 GLN 16 1 Y 1 A NE2 GLN 16 A NE2 GLN 16 1 Y 1 A CG TYR 17 A CG TYR 17 1 Y 1 A CD1 TYR 17 A CD1 TYR 17 1 Y 1 A CD2 TYR 17 A CD2 TYR 17 1 Y 1 A CE1 TYR 17 A CE1 TYR 17 1 Y 1 A CE2 TYR 17 A CE2 TYR 17 1 Y 1 A CZ TYR 17 A CZ TYR 17 1 Y 1 A OH TYR 17 A OH TYR 17 1 Y 1 A CG GLU 24 A CG GLU 24 1 Y 1 A CD GLU 24 A CD GLU 24 1 Y 1 A OE1 GLU 24 A OE1 GLU 24 1 Y 1 A OE2 GLU 24 A OE2 GLU 24 1 Y 1 A CG GLU 26 A CG GLU 26 1 Y 1 A CD GLU 26 A CD GLU 26 1 Y 1 A OE1 GLU 26 A OE1 GLU 26 1 Y 1 A OE2 GLU 26 A OE2 GLU 26 1 Y 1 A CG PHE 35 A CG PHE 35 1 Y 1 A CD1 PHE 35 A CD1 PHE 35 1 Y 1 A CD2 PHE 35 A CD2 PHE 35 1 Y 1 A CE1 PHE 35 A CE1 PHE 35 1 Y 1 A CE2 PHE 35 A CE2 PHE 35 1 Y 1 A CZ PHE 35 A CZ PHE 35 1 Y 1 A CG LYS 43 A CG LYS 43 1 Y 1 A CD LYS 43 A CD LYS 43 1 Y 1 A CE LYS 43 A CE LYS 43 1 Y 1 A NZ LYS 43 A NZ LYS 43 1 Y 1 A OG SER 69 A OG SER 69 1 Y 1 A OG SER 86 A OG SER 86 1 Y 1 A CG1 VAL 90 A CG1 VAL 90 1 Y 1 A CG2 VAL 90 A CG2 VAL 90 1 Y 1 A OG SER 204 A OG SER 204 1 Y 1 A OG SER 213 A OG SER 213 1 Y 1 A OG SER 232 A OG SER 232 1 Y 1 A CD1 ILE 275 A CD1 ILE 275 1 Y 1 A CG GLN 281 A CG GLN 281 1 Y 1 A CD GLN 281 A CD GLN 281 1 Y 1 A OE1 GLN 281 A OE1 GLN 281 1 Y 1 A NE2 GLN 281 A NE2 GLN 281 1 Y 1 A CG1 VAL 284 A CG1 VAL 284 1 Y 1 A CG2 VAL 284 A CG2 VAL 284 1 Y 1 A CG GLU 291 A CG GLU 291 1 Y 1 A CD GLU 291 A CD GLU 291 1 Y 1 A OE1 GLU 291 A OE1 GLU 291 1 Y 1 A OE2 GLU 291 A OE2 GLU 291 1 Y 1 A CD1 ILE 302 A CD1 ILE 302 1 Y 1 A CG GLU 359 A CG GLU 359 1 Y 1 A CD GLU 359 A CD GLU 359 1 Y 1 A OE1 GLU 359 A OE1 GLU 359 1 Y 1 A OE2 GLU 359 A OE2 GLU 359 1 Y 1 A CG GLN 364 A CG GLN 364 1 Y 1 A CD GLN 364 A CD GLN 364 1 Y 1 A OE1 GLN 364 A OE1 GLN 364 1 Y 1 A NE2 GLN 364 A NE2 GLN 364 1 Y 1 A CG LYS 365 A CG LYS 365 1 Y 1 A CD LYS 365 A CD LYS 365 1 Y 1 A CE LYS 365 A CE LYS 365 1 Y 1 A NZ LYS 365 A NZ LYS 365 1 Y 1 A OG SER 372 A OG SER 372 1 Y 1 A CD1 ILE 415 A CD1 ILE 415 1 Y 1 A O1 NAG 871 B O1 NAG 1 1 N 1 A O1 NAG 1681 C O1 NAG 1 1 N 1 A O1 NAG 3681 D O1 NAG 1 1 N 1 A TYR 333 0.085 SIDE CHAIN 1 -11.74 1.70 111.00 99.26 A A A CB CG CD1 LEU LEU LEU 21 21 21 N 1 -5.52 0.90 118.30 112.78 A A A CB CG OD1 ASP ASP ASP 22 22 22 N 1 5.70 0.90 118.30 124.00 A A A CB CG OD1 ASP ASP ASP 25 25 25 N 1 -8.12 0.90 118.30 110.18 A A A CB CG OD2 ASP ASP ASP 25 25 25 N 1 5.54 0.90 118.30 123.84 A A A CB CG OD2 ASP ASP ASP 27 27 27 N 1 6.87 0.90 118.30 125.17 A A A CB CG OD1 ASP ASP ASP 40 40 40 N 1 -9.67 0.90 118.30 108.63 A A A CB CG OD2 ASP ASP ASP 40 40 40 N 1 -16.06 2.10 128.40 112.34 A A A C N CD GLY PRO PRO 72 73 73 Y 1 6.03 0.90 118.30 124.33 A A A CB CG OD1 ASP ASP ASP 74 74 74 N 1 -7.10 0.90 118.30 111.20 A A A CB CG OD2 ASP ASP ASP 74 74 74 N 1 -12.42 1.80 110.60 98.18 A A A N CA CB ASN ASN ASN 87 87 87 N 1 -5.98 0.90 118.30 112.32 A A A CB CG OD2 ASP ASP ASP 94 94 94 N 1 -3.99 0.60 121.00 117.01 A A A CB CG CD2 TYR TYR TYR 151 151 151 N 1 6.23 0.90 118.30 124.53 A A A CB CG OD2 ASP ASP ASP 180 180 180 N 1 -10.16 1.40 112.40 102.24 A A A CA CB CG2 THR THR THR 237 237 237 N 1 -10.45 1.50 110.10 99.65 A A A CB CA C ALA ALA ALA 243 243 243 N 1 8.22 1.20 103.30 111.52 A A A N CA CB PRO PRO PRO 247 247 247 N 1 3.13 0.50 120.30 123.43 A A A NE CZ NH2 ARG ARG ARG 250 250 250 N 1 9.54 1.40 123.60 133.14 A A A CD NE CZ ARG ARG ARG 259 259 259 N 1 4.30 0.50 120.30 124.60 A A A NE CZ NH1 ARG ARG ARG 259 259 259 N 1 -3.69 0.50 120.30 116.61 A A A NE CZ NH2 ARG ARG ARG 259 259 259 N 1 -6.35 0.90 118.30 111.95 A A A CB CG OD2 ASP ASP ASP 261 261 261 N 1 -5.70 0.90 118.30 112.60 A A A CB CG OD2 ASP ASP ASP 274 274 274 N 1 7.03 0.90 118.30 125.33 A A A CB CG OD2 ASP ASP ASP 276 276 276 N 1 -12.22 2.00 110.40 98.18 A A A CB CA C ASN ASN ASN 280 280 280 N 1 7.42 0.90 118.30 125.72 A A A CB CG OD1 ASP ASP ASP 293 293 293 N 1 -7.29 0.90 118.30 111.01 A A A CB CG OD2 ASP ASP ASP 293 293 293 N 1 -7.23 0.90 118.30 111.07 A A A CB CG OD2 ASP ASP ASP 301 301 301 N 1 5.22 0.50 120.30 125.52 A A A NE CZ NH1 ARG ARG ARG 304 304 304 N 1 -3.82 0.50 120.30 116.48 A A A NE CZ NH2 ARG ARG ARG 304 304 304 N 1 -5.92 0.90 118.30 112.38 A A A CB CG OD1 ASP ASP ASP 311 311 311 N 1 6.28 0.90 118.30 124.58 A A A CB CG OD2 ASP ASP ASP 311 311 311 N 1 -12.19 2.00 110.40 98.21 A A A CB CA C TRP TRP TRP 312 312 312 N 1 6.17 0.90 118.30 124.47 A A A CB CG OD1 ASP ASP ASP 322 322 322 N 1 -6.64 0.90 118.30 111.66 A A A CB CG OD2 ASP ASP ASP 322 322 322 N 1 6.71 0.90 118.30 125.01 A A A CB CG OD1 ASP ASP ASP 327 327 327 N 1 -6.16 0.90 118.30 112.14 A A A CB CG OD2 ASP ASP ASP 327 327 327 N 1 -3.69 0.60 121.00 117.31 A A A CB CG CD1 TYR TYR TYR 333 333 333 N 1 -7.80 0.90 118.30 110.50 A A A CB CG OD2 ASP ASP ASP 338 338 338 N 1 -12.69 2.00 110.40 97.71 A A A CB CA C ASN ASN ASN 342 342 342 N 1 -14.59 2.00 110.40 95.81 A A A CB CA C LYS LYS LYS 347 347 347 N 1 -37.49 2.10 128.40 90.91 A A A C N CD LEU PRO PRO 353 354 354 Y 1 5.01 0.50 120.30 125.31 A A A NE CZ NH1 ARG ARG ARG 367 367 367 N 1 12.09 1.80 110.60 122.69 A A A N CA CB ASN ASN ASN 368 368 368 N 1 -6.82 0.90 118.30 111.48 A A A CB CG OD2 ASP ASP ASP 375 375 375 N 1 10.13 1.50 110.90 121.03 A A A CA CB CG2 VAL VAL VAL 381 381 381 N 1 5.45 0.50 120.30 125.75 A A A NE CZ NH1 ARG ARG ARG 391 391 391 N 1 -11.08 1.50 110.90 99.82 A A A CA CB CG2 VAL VAL VAL 411 411 411 N 1 A A CD OE2 GLU GLU 158 158 0.071 0.011 1.252 1.323 N 1 A A CD OE2 GLU GLU 189 189 0.073 0.011 1.252 1.325 N 1 A A CD OE2 GLU GLU 195 195 0.067 0.011 1.252 1.319 N 1 A A CD OE2 GLU GLU 198 198 0.077 0.011 1.252 1.329 N 1 A A CD OE1 GLU GLU 205 205 0.114 0.011 1.252 1.366 N 1 A A CD OE2 GLU GLU 206 206 0.068 0.011 1.252 1.320 N 1 A A CD OE1 GLU GLU 211 211 0.074 0.011 1.252 1.326 N 1 A A CD OE1 GLU GLU 215 215 0.076 0.011 1.252 1.328 N 1 A A CD OE1 GLU GLU 222 222 0.120 0.011 1.252 1.372 N 1 A A CD OE2 GLU GLU 263 263 0.100 0.011 1.252 1.352 N 1 A A CD OE1 GLU GLU 286 286 0.074 0.011 1.252 1.326 N 1 A A CD OE1 GLU GLU 360 360 0.069 0.011 1.252 1.321 N 1 A A CD OE2 GLU GLU 376 376 0.076 0.011 1.252 1.328 N 1 A A CD OE2 GLU GLU 405 405 0.099 0.011 1.252 1.351 N 1 A A CD OE1 GLU GLU 413 413 0.077 0.011 1.252 1.329 N 1 A A C OXT LEU LEU 421 421 1.506 0.019 1.229 2.735 N 1 A LYS 3 -112.82 -162.17 1 A LYS 6 -21.35 -67.22 1 A ILE 10 18.37 -157.24 1 A PRO 12 -70.84 -115.28 1 A ASN 13 -16.95 -19.01 1 A VAL 14 -61.72 -101.30 1 A THR 15 135.05 87.47 1 A GLU 24 -10.81 -80.17 1 A ASN 39 -93.88 -98.28 1 A LYS 43 -93.25 -60.28 1 A ASP 44 -31.13 125.52 1 A PRO 45 -63.02 -179.49 1 A PHE 63 -95.69 46.44 1 A PHE 64 -166.70 -24.47 1 A ALA 65 -138.33 -37.13 1 A LEU 66 -146.30 18.53 1 A PRO 73 -27.69 -32.42 1 A PRO 77 -41.74 163.58 1 A TYR 82 -162.88 24.09 1 A ASN 87 -147.56 42.65 1 A ALA 88 172.70 143.17 1 A ASP 94 -110.54 74.10 1 A PRO 96 -89.59 -156.65 1 A ASN 98 100.62 10.00 1 A TYR 103 178.47 172.80 1 A SER 107 -150.52 -143.76 1 A LEU 125 -54.36 -86.52 1 A PHE 126 -23.72 -48.33 1 A PRO 131 -60.03 8.62 1 A VAL 134 -98.84 -95.86 1 A ASN 135 6.26 -62.43 1 A LYS 136 -47.93 -12.61 1 A SER 146 59.86 -113.20 1 A LEU 160 -65.73 11.16 1 A ARG 165 -36.86 133.77 1 A ASN 176 34.95 51.86 1 A SER 200 -38.52 124.19 1 A THR 237 -58.57 -70.42 1 A ASP 257 -175.70 100.75 1 A ASN 266 -44.94 172.05 1 A PHE 300 -26.65 -49.87 1 A ASP 311 -26.13 -77.88 1 A TRP 312 -39.76 -28.39 1 A GLN 326 -105.65 40.98 1 A ASP 336 -69.19 9.11 1 A ASN 342 -22.72 142.54 1 A ASP 351 -57.67 -9.13 1 A TRP 355 175.55 166.60 1 A ASP 358 -16.66 -87.10 1 A GLU 360 -54.64 -72.98 1 A ILE 373 -76.66 -72.30 1 A LYS 385 51.82 -129.25 1 A HIS 397 -34.31 -30.13 1 A VAL 411 -57.16 -75.51 1 A TRP 414 -98.16 -61.79 0.18 2.6 1 2.6 38 3325 42 0 3245 0.023 3.3 refinement TNT SERINE CARBOXYPEPTIDASE SITE-DIRECTED MUTAGENESIS ON (SERINE) CARBOXYPEPTIDASE Y FROM YEAST. THE SIGNIFICANCE OF THR 60 AND MET 398 IN HYDROLYSIS AND AMINOLYSIS REACTIONS 1 N N 2 N N 2 N N 2 N N 3 N N A LEU 59 A LEU 59 HELX_P A LEU 62 A LEU 62 1 A 4 A TRP 84 A TRP 84 HELX_P A ASN 87 A ASN 87 5 B 4 A VAL 113 A VAL 113 HELX_P A GLN 129 A GLN 129 1 C 17 A PRO 131 A PRO 131 HELX_P A TYR 133 A TYR 133 5 D 3 A ALA 148 A ALA 148 HELX_P A LEU 160 A LEU 160 1 E 13 A PRO 181 A PRO 181 HELX_P A ALA 192 A ALA 192 1 F 12 A SER 204 A SER 204 HELX_P A SER 227 A SER 227 1 G 24 A VAL 230 A VAL 230 HELX_P A THR 251 A THR 251 1 H 22 A THR 271 A THR 271 HELX_P A ASN 280 A ASN 280 1 I 10 A ASP 282 A ASP 282 HELX_P A ALA 287 A ALA 287 1 J 6 A PHE 300 A PHE 300 HELX_P A LEU 307 A LEU 307 1 K 8 A ASP 311 A ASP 311 HELX_P A MET 313 A MET 313 5 L 3 A HIS 317 A HIS 317 HELX_P A ASN 325 A ASN 325 1 M 9 A TRP 343 A TRP 343 HELX_P A THR 350 A THR 350 1 N 8 A GLU 359 A GLU 359 HELX_P A SER 363 A SER 363 1 O 5 A VAL 399 A VAL 399 HELX_P A ASP 402 A ASP 402 1 P 4 A PRO 404 A PRO 404 HELX_P A ILE 415 A ILE 415 1 Q 12 disulf 2.152 A CYS 56 A SG CYS 56 1_555 A CYS 298 A SG CYS 298 1_555 disulf 2.044 A CYS 193 A SG CYS 193 1_555 A CYS 207 A SG CYS 207 1_555 disulf 2.114 A CYS 217 A SG CYS 217 1_555 A CYS 240 A SG CYS 240 1_555 disulf 2.060 A CYS 224 A SG CYS 224 1_555 A CYS 233 A SG CYS 233 1_555 disulf 2.185 A CYS 262 A SG CYS 262 1_555 A CYS 268 A SG CYS 268 1_555 HYDROLASE (CARBOXYPEPTIDASE) HYDROLASE (CARBOXYPEPTIDASE) A GLY 53 A GLY 53 1 A PRO 54 A PRO 54 9.30 A GLN 95 A GLN 95 1 A PRO 96 A PRO 96 2.03 CBPY_YEAST UNP 1 1 P00729 MKAFTSLLCGLGLSTTLAKAISLQRPLGLDKDVLLQAAEKFGLDLDLDHLLKELDSNVLDAWAQIEHLYPNQVMSLETST KPKFPEAIKTKKDWDFVVKNDAIENYQLRVNKIKDPKILGIDPNVTQYTGYLDVEDEDKHFFFWTFESRNDPAKDPVILW LNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYNFLELFFDQ FPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTDPLTQYNYYEPMACGEGGEPSVLPSEECSA MEDSLERCLGLIESCYDSQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVG AEVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNW TASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEWIHGGFSL 112 532 1CPY 1 421 P00729 A 1 1 421 1 GLU conflict ALA 65 1CPY A P00729 UNP 176 65 1 GLU conflict ALA 145 1CPY A P00729 UNP 256 145 11 11 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A LYS 1 A LYS 1 A LYS 3 A LYS 3 A TYR 17 A TYR 17 A VAL 23 A VAL 23 A LYS 28 A LYS 28 A PHE 35 A PHE 35 A THR 89 A THR 89 A ILE 91 A ILE 91 A VAL 46 A VAL 46 A LEU 50 A LEU 50 A PHE 140 A PHE 140 A ALA 145 A ALA 145 A LEU 169 A LEU 169 A GLY 175 A GLY 175 A ILE 330 A ILE 330 A GLY 335 A GLY 335 A PHE 387 A PHE 387 A VAL 392 A VAL 392 A VAL 377 A VAL 377 A TYR 384 A TYR 384 A ARG 367 A ARG 367 A THR 370 A THR 370 A LYS 1 A LYS 1 A LYS 3 A LYS 3 A TYR 17 A TYR 17 A VAL 23 A VAL 23 A LYS 28 A LYS 28 A PHE 35 A PHE 35 A TYR 103 A TYR 103 A SER 104 A SER 104 A VAL 46 A VAL 46 A LEU 50 A LEU 50 A PHE 140 A PHE 140 A ALA 145 A ALA 145 A LEU 169 A LEU 169 A GLY 175 A GLY 175 A ILE 330 A ILE 330 A GLY 335 A GLY 335 A PHE 387 A PHE 387 A VAL 392 A VAL 392 A VAL 377 A VAL 377 A TYR 384 A TYR 384 A ARG 367 A ARG 367 A THR 370 A THR 370 Unknown 4 Unknown 4 Unknown 7 Unknown 6 A SER 146 A SER 146 4 1_555 A ASP 338 A ASP 338 4 1_555 A HIS 397 A HIS 397 4 1_555 A ALA 145 A ALA 145 4 1_555 A ASN 51 A ASN 51 4 1_555 A GLY 52 A GLY 52 4 1_555 A ALA 145 A ALA 145 4 1_555 A HIS 397 A HIS 397 4 1_555 A THR 60 A THR 60 7 1_555 A PHE 64 A PHE 64 7 1_555 A ALA 65 A ALA 65 7 1_555 A TYR 256 A TYR 256 7 1_555 A TYR 269 A TYR 269 7 1_555 A LEU 272 A LEU 272 7 1_555 A MET 398 A MET 398 7 1_555 A TYR 147 A TYR 147 6 1_555 A LEU 178 A LEU 178 6 1_555 A LEU 245 A LEU 245 6 1_555 A TRP 312 A TRP 312 6 1_555 A ILE 340 A ILE 340 6 1_555 A CYS 341 A CYS 341 6 1_555 198 P 21 3