0.029155
0.000000
0.000000
0.000000
0.015221
0.000000
0.000000
0.000000
0.012837
0.00000
0.00000
0.00000
Matthews, D.
Ferre, R.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.
90.
90.
34.3
65.7
77.9
C31 H41 F N4 O7
600.678
4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
RUPINTRIVIR, bound form
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
96
11000
11007
10.1073/pnas.96.20.11000
10500114
Structure-assisted design of mechanism-based irreversible inhibitors of human rhinovirus 3C protease with potent antiviral activity against multiple rhinovirus serotypes.
1999
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
IMAGE PLATE
1998-11-08
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU RU200
19981.662
TYPE 2 RHINOVIRUS 3C PROTEASE
1
nat
polymer
600.678
4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
1
syn
non-polymer
18.015
water
221
nat
water
no
no
GPEEEFGMSLIKHNSCVITTENGKFTGLGVYDRFVVVPTHADPGKEIQVDGITTKVIDSYDLYNKNGIKLEITVLKLDRN
EKFRDIRRYIPNNEDDYPNCNLALLANQPEPTIINVGDVVSYGNILLSGNQTARMLKYSYPTKSGYCGGVLYKIGQVLGI
HVGGNGRDGFSAMLLRSYFT
GPEEEFGMSLIKHNSCVITTENGKFTGLGVYDRFVVVPTHADPGKEIQVDGITTKVIDSYDLYNKNGIKLEITVLKLDRN
EKFRDIRRYIPNNEDDYPNCNLALLANQPEPTIINVGDVVSYGNILLSGNQTARMLKYSYPTKSGYCGGVLYKIGQVLGI
HVGGNGRDGFSAMLLRSYFT
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Rhinovirus
sample
12130
Human rhinovirus 2
Human rhinovirus A
1
2.20
43.98
VAPOR DIFFUSION, HANGING DROP
7.5
20% PEG10K, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 13K
286.0
exptl_crystal_grow
pdbx_unobs_or_zero_occ_atoms
repository
Initial release
Version format compliance
Version format compliance
Advisory
Experimental preparation
1
0
1999-09-20
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-01-31
_exptl_crystal_grow.temp
RCSB
Y
RCSB
1999-08-10
REL
AG7
4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
HOH
water
AG7
501
2
AG7
AG7
501
A
WAT
601
3
HOH
HOH
601
A
WAT
602
3
HOH
HOH
602
A
WAT
603
3
HOH
HOH
603
A
WAT
604
3
HOH
HOH
604
A
WAT
605
3
HOH
HOH
605
A
WAT
606
3
HOH
HOH
606
A
WAT
607
3
HOH
HOH
607
A
WAT
608
3
HOH
HOH
608
A
WAT
609
3
HOH
HOH
609
A
WAT
610
3
HOH
HOH
610
A
WAT
611
3
HOH
HOH
611
A
WAT
612
3
HOH
HOH
612
A
WAT
613
3
HOH
HOH
613
A
WAT
614
3
HOH
HOH
614
A
WAT
615
3
HOH
HOH
615
A
WAT
616
3
HOH
HOH
616
A
WAT
617
3
HOH
HOH
617
A
WAT
619
3
HOH
HOH
619
A
WAT
622
3
HOH
HOH
622
A
WAT
625
3
HOH
HOH
625
A
WAT
626
3
HOH
HOH
626
A
WAT
628
3
HOH
HOH
628
A
WAT
629
3
HOH
HOH
629
A
WAT
630
3
HOH
HOH
630
A
WAT
632
3
HOH
HOH
632
A
WAT
634
3
HOH
HOH
634
A
WAT
635
3
HOH
HOH
635
A
WAT
636
3
HOH
HOH
636
A
WAT
637
3
HOH
HOH
637
A
WAT
639
3
HOH
HOH
639
A
WAT
641
3
HOH
HOH
641
A
WAT
642
3
HOH
HOH
642
A
WAT
643
3
HOH
HOH
643
A
WAT
644
3
HOH
HOH
644
A
WAT
645
3
HOH
HOH
645
A
WAT
646
3
HOH
HOH
646
A
WAT
647
3
HOH
HOH
647
A
WAT
648
3
HOH
HOH
648
A
WAT
649
3
HOH
HOH
649
A
WAT
650
3
HOH
HOH
650
A
WAT
653
3
HOH
HOH
653
A
WAT
654
3
HOH
HOH
654
A
WAT
656
3
HOH
HOH
656
A
WAT
657
3
HOH
HOH
657
A
WAT
658
3
HOH
HOH
658
A
WAT
659
3
HOH
HOH
659
A
WAT
660
3
HOH
HOH
660
A
WAT
661
3
HOH
HOH
661
A
WAT
664
3
HOH
HOH
664
A
WAT
665
3
HOH
HOH
665
A
WAT
666
3
HOH
HOH
666
A
WAT
667
3
HOH
HOH
667
A
WAT
668
3
HOH
HOH
668
A
WAT
669
3
HOH
HOH
669
A
WAT
670
3
HOH
HOH
670
A
WAT
672
3
HOH
HOH
672
A
WAT
673
3
HOH
HOH
673
A
WAT
674
3
HOH
HOH
674
A
WAT
675
3
HOH
HOH
675
A
WAT
676
3
HOH
HOH
676
A
WAT
677
3
HOH
HOH
677
A
WAT
678
3
HOH
HOH
678
A
WAT
679
3
HOH
HOH
679
A
WAT
680
3
HOH
HOH
680
A
WAT
681
3
HOH
HOH
681
A
WAT
682
3
HOH
HOH
682
A
WAT
683
3
HOH
HOH
683
A
WAT
684
3
HOH
HOH
684
A
WAT
685
3
HOH
HOH
685
A
WAT
686
3
HOH
HOH
686
A
WAT
687
3
HOH
HOH
687
A
WAT
689
3
HOH
HOH
689
A
WAT
690
3
HOH
HOH
690
A
WAT
691
3
HOH
HOH
691
A
WAT
692
3
HOH
HOH
692
A
WAT
693
3
HOH
HOH
693
A
WAT
694
3
HOH
HOH
694
A
WAT
695
3
HOH
HOH
695
A
WAT
696
3
HOH
HOH
696
A
WAT
700
3
HOH
HOH
700
A
WAT
701
3
HOH
HOH
701
A
WAT
702
3
HOH
HOH
702
A
WAT
704
3
HOH
HOH
704
A
WAT
705
3
HOH
HOH
705
A
WAT
706
3
HOH
HOH
706
A
WAT
710
3
HOH
HOH
710
A
WAT
711
3
HOH
HOH
711
A
WAT
712
3
HOH
HOH
712
A
WAT
713
3
HOH
HOH
713
A
WAT
714
3
HOH
HOH
714
A
WAT
715
3
HOH
HOH
715
A
WAT
717
3
HOH
HOH
717
A
WAT
718
3
HOH
HOH
718
A
WAT
720
3
HOH
HOH
720
A
WAT
724
3
HOH
HOH
724
A
WAT
725
3
HOH
HOH
725
A
WAT
728
3
HOH
HOH
728
A
WAT
730
3
HOH
HOH
730
A
WAT
731
3
HOH
HOH
731
A
WAT
734
3
HOH
HOH
734
A
WAT
735
3
HOH
HOH
735
A
WAT
737
3
HOH
HOH
737
A
WAT
738
3
HOH
HOH
738
A
WAT
739
3
HOH
HOH
739
A
WAT
740
3
HOH
HOH
740
A
WAT
741
3
HOH
HOH
741
A
WAT
742
3
HOH
HOH
742
A
WAT
743
3
HOH
HOH
743
A
WAT
744
3
HOH
HOH
744
A
WAT
745
3
HOH
HOH
745
A
WAT
746
3
HOH
HOH
746
A
WAT
749
3
HOH
HOH
749
A
WAT
750
3
HOH
HOH
750
A
WAT
751
3
HOH
HOH
751
A
WAT
753
3
HOH
HOH
753
A
WAT
755
3
HOH
HOH
755
A
WAT
757
3
HOH
HOH
757
A
WAT
758
3
HOH
HOH
758
A
WAT
759
3
HOH
HOH
759
A
WAT
763
3
HOH
HOH
763
A
WAT
765
3
HOH
HOH
765
A
WAT
766
3
HOH
HOH
766
A
WAT
767
3
HOH
HOH
767
A
WAT
768
3
HOH
HOH
768
A
WAT
769
3
HOH
HOH
769
A
WAT
771
3
HOH
HOH
771
A
WAT
777
3
HOH
HOH
777
A
WAT
778
3
HOH
HOH
778
A
WAT
780
3
HOH
HOH
780
A
WAT
802
3
HOH
HOH
802
A
WAT
803
3
HOH
HOH
803
A
WAT
809
3
HOH
HOH
809
A
WAT
812
3
HOH
HOH
812
A
WAT
814
3
HOH
HOH
814
A
WAT
815
3
HOH
HOH
815
A
WAT
816
3
HOH
HOH
816
A
WAT
817
3
HOH
HOH
817
A
WAT
818
3
HOH
HOH
818
A
WAT
819
3
HOH
HOH
819
A
WAT
820
3
HOH
HOH
820
A
WAT
821
3
HOH
HOH
821
A
WAT
823
3
HOH
HOH
823
A
WAT
825
3
HOH
HOH
825
A
WAT
826
3
HOH
HOH
826
A
WAT
827
3
HOH
HOH
827
A
WAT
829
3
HOH
HOH
829
A
WAT
831
3
HOH
HOH
831
A
WAT
832
3
HOH
HOH
832
A
WAT
833
3
HOH
HOH
833
A
WAT
834
3
HOH
HOH
834
A
WAT
836
3
HOH
HOH
836
A
WAT
837
3
HOH
HOH
837
A
WAT
838
3
HOH
HOH
838
A
WAT
839
3
HOH
HOH
839
A
WAT
840
3
HOH
HOH
840
A
WAT
841
3
HOH
HOH
841
A
WAT
842
3
HOH
HOH
842
A
WAT
843
3
HOH
HOH
843
A
WAT
844
3
HOH
HOH
844
A
WAT
845
3
HOH
HOH
845
A
WAT
846
3
HOH
HOH
846
A
WAT
848
3
HOH
HOH
848
A
WAT
849
3
HOH
HOH
849
A
WAT
850
3
HOH
HOH
850
A
WAT
851
3
HOH
HOH
851
A
WAT
852
3
HOH
HOH
852
A
WAT
853
3
HOH
HOH
853
A
WAT
854
3
HOH
HOH
854
A
WAT
855
3
HOH
HOH
855
A
WAT
856
3
HOH
HOH
856
A
WAT
857
3
HOH
HOH
857
A
WAT
858
3
HOH
HOH
858
A
WAT
859
3
HOH
HOH
859
A
WAT
861
3
HOH
HOH
861
A
WAT
863
3
HOH
HOH
863
A
WAT
865
3
HOH
HOH
865
A
WAT
866
3
HOH
HOH
866
A
WAT
867
3
HOH
HOH
867
A
WAT
868
3
HOH
HOH
868
A
WAT
871
3
HOH
HOH
871
A
WAT
872
3
HOH
HOH
872
A
WAT
873
3
HOH
HOH
873
A
WAT
874
3
HOH
HOH
874
A
WAT
875
3
HOH
HOH
875
A
WAT
876
3
HOH
HOH
876
A
WAT
878
3
HOH
HOH
878
A
WAT
879
3
HOH
HOH
879
A
WAT
880
3
HOH
HOH
880
A
WAT
883
3
HOH
HOH
883
A
WAT
884
3
HOH
HOH
884
A
WAT
885
3
HOH
HOH
885
A
WAT
887
3
HOH
HOH
887
A
WAT
888
3
HOH
HOH
888
A
WAT
891
3
HOH
HOH
891
A
WAT
892
3
HOH
HOH
892
A
WAT
893
3
HOH
HOH
893
A
WAT
894
3
HOH
HOH
894
A
WAT
895
3
HOH
HOH
895
A
WAT
897
3
HOH
HOH
897
A
WAT
899
3
HOH
HOH
899
A
WAT
900
3
HOH
HOH
900
A
WAT
903
3
HOH
HOH
903
A
WAT
904
3
HOH
HOH
904
A
WAT
905
3
HOH
HOH
905
A
WAT
907
3
HOH
HOH
907
A
WAT
908
3
HOH
HOH
908
A
WAT
909
3
HOH
HOH
909
A
WAT
910
3
HOH
HOH
910
A
WAT
911
3
HOH
HOH
911
A
WAT
912
3
HOH
HOH
912
A
WAT
913
3
HOH
HOH
913
A
WAT
914
3
HOH
HOH
914
A
WAT
915
3
HOH
HOH
915
A
WAT
916
3
HOH
HOH
916
A
WAT
918
3
HOH
HOH
918
A
WAT
919
3
HOH
HOH
919
A
WAT
921
3
HOH
HOH
921
A
WAT
922
3
HOH
HOH
922
A
WAT
923
3
HOH
HOH
923
A
WAT
924
3
HOH
HOH
924
A
WAT
928
3
HOH
HOH
928
A
GLY
1
n
1
GLY
1
A
PRO
2
n
2
PRO
2
A
GLU
3
n
3
GLU
3
A
GLU
4
n
4
GLU
4
A
GLU
5
n
5
GLU
5
A
PHE
6
n
6
PHE
6
A
GLY
7
n
7
GLY
7
A
MET
8
n
8
MET
8
A
SER
9
n
9
SER
9
A
LEU
10
n
10
LEU
10
A
ILE
11
n
11
ILE
11
A
LYS
12
n
12
LYS
12
A
HIS
13
n
13
HIS
13
A
ASN
14
n
14
ASN
14
A
SER
15
n
15
SER
15
A
CYS
16
n
16
CYS
16
A
VAL
17
n
17
VAL
17
A
ILE
18
n
18
ILE
18
A
THR
19
n
19
THR
19
A
THR
20
n
20
THR
20
A
GLU
21
n
21
GLU
21
A
ASN
22
n
22
ASN
22
A
GLY
23
n
23
GLY
23
A
LYS
24
n
24
LYS
24
A
PHE
25
n
25
PHE
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
LEU
28
n
28
LEU
28
A
GLY
29
n
29
GLY
29
A
VAL
30
n
30
VAL
30
A
TYR
31
n
31
TYR
31
A
ASP
32
n
32
ASP
32
A
ARG
33
n
33
ARG
33
A
PHE
34
n
34
PHE
34
A
VAL
35
n
35
VAL
35
A
VAL
36
n
36
VAL
36
A
VAL
37
n
37
VAL
37
A
PRO
38
n
38
PRO
38
A
THR
39
n
39
THR
39
A
HIS
40
n
40
HIS
40
A
ALA
41
n
41
ALA
41
A
ASP
42
n
42
ASP
42
A
PRO
43
n
43
PRO
43
A
GLY
44
n
44
GLY
44
A
LYS
45
n
45
LYS
45
A
GLU
46
n
46
GLU
46
A
ILE
47
n
47
ILE
47
A
GLN
48
n
48
GLN
48
A
VAL
49
n
49
VAL
49
A
ASP
50
n
50
ASP
50
A
GLY
51
n
51
GLY
51
A
ILE
52
n
52
ILE
52
A
THR
53
n
53
THR
53
A
THR
54
n
54
THR
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ILE
57
n
57
ILE
57
A
ASP
58
n
58
ASP
58
A
SER
59
n
59
SER
59
A
TYR
60
n
60
TYR
60
A
ASP
61
n
61
ASP
61
A
LEU
62
n
62
LEU
62
A
TYR
63
n
63
TYR
63
A
ASN
64
n
64
ASN
64
A
LYS
65
n
65
LYS
65
A
ASN
66
n
66
ASN
66
A
GLY
67
n
67
GLY
67
A
ILE
68
n
68
ILE
68
A
LYS
69
n
69
LYS
69
A
LEU
70
n
70
LEU
70
A
GLU
71
n
71
GLU
71
A
ILE
72
n
72
ILE
72
A
THR
73
n
73
THR
73
A
VAL
74
n
74
VAL
74
A
LEU
75
n
75
LEU
75
A
LYS
76
n
76
LYS
76
A
LEU
77
n
77
LEU
77
A
ASP
78
n
78
ASP
78
A
ARG
79
n
79
ARG
79
A
ASN
80
n
80
ASN
80
A
GLU
81
n
81
GLU
81
A
LYS
82
n
82
LYS
82
A
PHE
83
n
83
PHE
83
A
ARG
84
n
84
ARG
84
A
ASP
85
n
85
ASP
85
A
ILE
86
n
86
ILE
86
A
ARG
87
n
87
ARG
87
A
ARG
88
n
88
ARG
88
A
TYR
89
n
89
TYR
89
A
ILE
90
n
90
ILE
90
A
PRO
91
n
91
PRO
91
A
ASN
92
n
92
ASN
92
A
ASN
93
n
93
ASN
93
A
GLU
94
n
94
GLU
94
A
ASP
95
n
95
ASP
95
A
ASP
96
n
96
ASP
96
A
TYR
97
n
97
TYR
97
A
PRO
98
n
98
PRO
98
A
ASN
99
n
99
ASN
99
A
CYS
100
n
100
CYS
100
A
ASN
101
n
101
ASN
101
A
LEU
102
n
102
LEU
102
A
ALA
103
n
103
ALA
103
A
LEU
104
n
104
LEU
104
A
LEU
105
n
105
LEU
105
A
ALA
106
n
106
ALA
106
A
ASN
107
n
107
ASN
107
A
GLN
108
n
108
GLN
108
A
PRO
109
n
109
PRO
109
A
GLU
110
n
110
GLU
110
A
PRO
111
n
111
PRO
111
A
THR
112
n
112
THR
112
A
ILE
113
n
113
ILE
113
A
ILE
114
n
114
ILE
114
A
ASN
115
n
115
ASN
115
A
VAL
116
n
116
VAL
116
A
GLY
117
n
117
GLY
117
A
ASP
118
n
118
ASP
118
A
VAL
119
n
119
VAL
119
A
VAL
120
n
120
VAL
120
A
SER
121
n
121
SER
121
A
TYR
122
n
122
TYR
122
A
GLY
123
n
123
GLY
123
A
ASN
124
n
124
ASN
124
A
ILE
125
n
125
ILE
125
A
LEU
126
n
126
LEU
126
A
LEU
127
n
127
LEU
127
A
SER
128
n
128
SER
128
A
GLY
129
n
129
GLY
129
A
ASN
130
n
130
ASN
130
A
GLN
131
n
131
GLN
131
A
THR
132
n
132
THR
132
A
ALA
133
n
133
ALA
133
A
ARG
134
n
134
ARG
134
A
MET
135
n
135
MET
135
A
LEU
136
n
136
LEU
136
A
LYS
137
n
137
LYS
137
A
TYR
138
n
138
TYR
138
A
SER
139
n
139
SER
139
A
TYR
140
n
140
TYR
140
A
PRO
141
n
141
PRO
141
A
THR
142
n
142
THR
142
A
LYS
143
n
143
LYS
143
A
SER
144
n
144
SER
144
A
GLY
145
n
145
GLY
145
A
TYR
146
n
146
TYR
146
A
CYS
147
n
147
CYS
147
A
GLY
148
n
148
GLY
148
A
GLY
149
n
149
GLY
149
A
VAL
150
n
150
VAL
150
A
LEU
151
n
151
LEU
151
A
TYR
152
n
152
TYR
152
A
LYS
153
n
153
LYS
153
A
ILE
154
n
154
ILE
154
A
GLY
155
n
155
GLY
155
A
GLN
156
n
156
GLN
156
A
VAL
157
n
157
VAL
157
A
LEU
158
n
158
LEU
158
A
GLY
159
n
159
GLY
159
A
ILE
160
n
160
ILE
160
A
HIS
161
n
161
HIS
161
A
VAL
162
n
162
VAL
162
A
GLY
163
n
163
GLY
163
A
GLY
164
n
164
GLY
164
A
ASN
165
n
165
ASN
165
A
GLY
166
n
166
GLY
166
A
ARG
167
n
167
ARG
167
A
ASP
168
n
168
ASP
168
A
GLY
169
n
169
GLY
169
A
PHE
170
n
170
PHE
170
A
SER
171
n
171
SER
171
A
ALA
172
n
172
ALA
172
A
MET
173
n
173
MET
173
A
LEU
174
n
174
LEU
174
A
LEU
175
n
175
LEU
175
A
ARG
176
n
176
ARG
176
A
SER
177
n
177
SER
177
A
TYR
178
n
178
TYR
178
A
PHE
179
n
179
PHE
179
A
THR
180
n
180
THR
180
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
20
A
N
THR
20
A
O
GLY
23
A
O
GLY
23
A
N
GLY
27
A
N
GLY
27
A
O
CYS
16
A
O
CYS
16
A
N
THR
19
A
N
THR
19
A
O
GLN
48
A
O
GLN
48
A
N
VAL
49
A
N
VAL
49
A
O
ILE
52
A
O
ILE
52
A
O
LEU
62
A
O
LEU
62
A
N
LEU
70
A
N
LEU
70
A
N
LEU
75
A
N
LEU
75
A
O
VAL
35
A
O
VAL
35
A
N
LEU
104
A
N
LEU
104
A
O
THR
112
A
O
THR
112
A
O
VAL
119
A
O
VAL
119
A
N
TYR
97
A
N
TYR
97
A
O
ALA
103
A
O
ALA
103
A
N
VAL
150
A
N
VAL
150
A
O
LYS
153
A
O
LYS
153
A
N
GLN
156
A
N
GLN
156
A
N
VAL
162
A
N
VAL
162
A
O
PHE
170
A
O
PHE
170
A
O
SER
171
A
O
SER
171
A
N
LEU
136
A
N
LEU
136
A
O
LEU
127
A
O
LEU
127
A
N
ASN
130
A
N
ASN
130
1
A
CD
LYS
12
A
CD
LYS
12
1
Y
1
A
CE
LYS
12
A
CE
LYS
12
1
Y
1
A
NZ
LYS
12
A
NZ
LYS
12
1
Y
1
A
CG
GLU
21
A
CG
GLU
21
1
Y
1
A
CD
GLU
21
A
CD
GLU
21
1
Y
1
A
OE1
GLU
21
A
OE1
GLU
21
1
Y
1
A
OE2
GLU
21
A
OE2
GLU
21
1
Y
1
A
CG
LYS
45
A
CG
LYS
45
1
Y
1
A
CD
LYS
45
A
CD
LYS
45
1
Y
1
A
CE
LYS
45
A
CE
LYS
45
1
Y
1
A
NZ
LYS
45
A
NZ
LYS
45
1
Y
1
A
CG
LYS
65
A
CG
LYS
65
1
Y
1
A
CD
LYS
65
A
CD
LYS
65
1
Y
1
A
CE
LYS
65
A
CE
LYS
65
1
Y
1
A
NZ
LYS
65
A
NZ
LYS
65
1
Y
1
A
TYR
152
0.072
SIDE CHAIN
1
4.19
0.50
120.30
124.49
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
33
33
33
N
1
3.34
0.50
120.30
123.64
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
84
84
84
N
1
-3.59
0.50
120.30
116.71
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
87
87
87
N
1
3.00
0.50
120.30
123.30
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
87
87
87
N
1
-4.33
0.50
120.30
115.97
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
88
88
88
N
1
-5.96
0.60
121.00
115.04
A
A
A
CB
CG
CD2
TYR
TYR
TYR
89
89
89
N
1
4.16
0.50
120.30
124.46
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
134
134
134
N
1
-8.93
1.40
123.60
114.67
A
A
A
CD
NE
CZ
ARG
ARG
ARG
176
176
176
N
1
-3.65
0.60
121.00
117.35
A
A
A
CB
CG
CD1
TYR
TYR
TYR
178
178
178
N
1
24.89
2.70
111.60
136.49
A
A
A
CB
CA
C
THR
THR
THR
180
180
180
N
1
-12.60
1.90
110.30
97.70
A
A
A
N
CA
CB
THR
THR
THR
180
180
180
N
1
-19.52
2.70
111.00
91.48
A
A
A
N
CA
C
THR
THR
THR
180
180
180
N
1
A
ASP
32
40.21
-117.92
1
A
LEU
105
-128.28
-65.60
1
A
ASN
107
57.39
5.92
1
A
ARG
167
-101.80
-62.05
1
A
PHE
179
-106.16
44.44
0.2180000
1.85
10.0
0
13981
12184
87.1
1
1.5
1.5
ENGH & HUBER
1.85
10.0
663
2446
83
0
1700
1.85
20.00
1CQQ
14527
13981
1.0
1.0
0.0480000
1
10.3
89.2
0.2310000
1.85
1.92
1.6
48.7
model building
X-PLOR
refinement
X-PLOR
3.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
TYPE 2 RHINOVIRUS 3C PROTEASE
TYPE 2 RHINOVIRUS 3C PROTEASE WITH AG7088 INHIBITOR
1
N
N
2
N
N
3
N
N
A
GLY
1
A
GLY
1
HELX_P
A
ASN
14
A
ASN
14
1
1
14
A
HIS
40
A
HIS
40
HELX_P
A
ASP
42
A
ASP
42
5
2
3
A
ASP
85
A
ASP
85
HELX_P
A
ILE
90
A
ILE
90
5
3
6
A
LEU
175
A
LEU
175
HELX_P
A
PHE
179
A
PHE
179
5
4
5
covale
1.819
A
CYS
147
A
SG
CYS
147
1_555
A
AG7
501
B
C19
AG7
1_555
HYDROLASE
VIRAL PROTEIN, HYDROLASE
POLG_HRV2
UNP
1
P04936
1508
1687
1CQQ
1
180
P04936
A
1
1
180
7
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
15
A
SER
15
A
THR
20
A
THR
20
A
GLY
23
A
GLY
23
A
TYR
31
A
TYR
31
A
SER
15
A
SER
15
A
THR
20
A
THR
20
A
GLU
46
A
GLU
46
A
VAL
49
A
VAL
49
A
ILE
52
A
ILE
52
A
TYR
63
A
TYR
63
A
LYS
69
A
LYS
69
A
LEU
77
A
LEU
77
A
PHE
34
A
PHE
34
A
PRO
38
A
PRO
38
A
TYR
97
A
TYR
97
A
LEU
104
A
LEU
104
A
THR
112
A
THR
112
A
SER
121
A
SER
121
A
TYR
97
A
TYR
97
A
LEU
104
A
LEU
104
A
VAL
150
A
VAL
150
A
LYS
153
A
LYS
153
A
GLN
156
A
GLN
156
A
GLY
164
A
GLY
164
A
GLY
169
A
GLY
169
A
MET
173
A
MET
173
A
MET
135
A
MET
135
A
TYR
138
A
TYR
138
A
ILE
125
A
ILE
125
A
LEU
127
A
LEU
127
A
ASN
130
A
ASN
130
A
THR
132
A
THR
132
BINDING SITE FOR RESIDUE AG7 A 501
Software
23
A
PRO
2
A
PRO
2
23
1_455
A
ASN
22
A
ASN
22
23
1_555
A
LYS
24
A
LYS
24
23
1_555
A
PHE
25
A
PHE
25
23
1_555
A
HIS
40
A
HIS
40
23
1_555
A
GLU
71
A
GLU
71
23
1_555
A
LEU
126
A
LEU
126
23
1_555
A
LEU
127
A
LEU
127
23
1_555
A
SER
128
A
SER
128
23
1_555
A
ASN
130
A
ASN
130
23
1_555
A
THR
142
A
THR
142
23
1_555
A
LYS
143
A
LYS
143
23
1_555
A
GLY
145
A
GLY
145
23
1_555
A
TYR
146
A
TYR
146
23
1_555
A
CYS
147
A
CYS
147
23
1_555
A
HIS
161
A
HIS
161
23
1_555
A
VAL
162
A
VAL
162
23
1_555
A
GLY
163
A
GLY
163
23
1_555
A
GLY
164
A
GLY
164
23
1_555
A
ASN
165
A
ASN
165
23
1_555
A
PHE
170
A
PHE
170
23
1_555
A
HOH
739
C
HOH
23
1_555
A
HOH
823
C
HOH
23
1_555
19
P 21 21 21