0.013135
0.007584
0.000000
0.000000
0.015167
0.000000
0.000000
0.000000
0.024752
0.00000
0.00000
0.00000
Miki, K.
Sogabe, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
76.130
76.130
40.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H34 Fe N4 O4
618.503
HEME C
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
50
271
275
10.1107/S0907444993013952
15299438
Application of an automatic molecular-replacement procedure to crystal structure analysis of cytochrome c2 from Rhodopseudomonas viridis.
1994
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
11667.220
CYTOCHROME C2
1
man
polymer
618.503
HEME C
1
syn
non-polymer
no
no
QDAASGEQVFKQCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKMI
FAGVKDEQKVSDLIAYIKQFNADGSKK
QDAASGEQVFKQCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKMI
FAGVKDEQKVSDLIAYIKQFNADGSKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Blastochloris
sample
1079
Blastochloris viridis
2.90
57.52
pdbx_database_status
struct_conf
struct_conf_type
software
struct_conn
software
atom_site
chem_comp
entity
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
Data collection
Derived calculations
Refinement description
Data collection
Refinement description
Atomic model
Data collection
Derived calculations
Non-polymer description
Structure summary
1
0
1994-04-30
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
1
4
2019-07-17
1
5
2019-08-14
2
0
2021-03-03
_pdbx_database_status.process_site
_software.classification
_struct_conn.pdbx_leaving_atom_flag
_software.classification
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.name
_chem_comp.pdbx_synonyms
_entity.formula_weight
_entity.pdbx_description
_pdbx_entity_nonpoly.comp_id
_pdbx_entity_nonpoly.name
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1993-12-27
REL
HEC
HEME C
HEM
108
2
HEC
HEC
108
A
GLN
1
n
1
GLN
1
A
ASP
2
n
2
ASP
2
A
ALA
3
n
3
ALA
3
A
ALA
4
n
4
ALA
4
A
SER
5
n
5
SER
5
A
GLY
6
n
6
GLY
6
A
GLU
7
n
7
GLU
7
A
GLN
8
n
8
GLN
8
A
VAL
9
n
9
VAL
9
A
PHE
10
n
10
PHE
10
A
LYS
11
n
11
LYS
11
A
GLN
12
n
12
GLN
12
A
CYS
13
n
13
CYS
13
A
LEU
14
n
14
LEU
14
A
VAL
15
n
15
VAL
15
A
CYS
16
n
16
CYS
16
A
HIS
17
n
17
HIS
17
A
SER
18
n
18
SER
18
A
ILE
19
n
19
ILE
19
A
GLY
20
n
20
GLY
20
A
PRO
21
n
21
PRO
21
A
GLY
22
n
22
GLY
22
A
ALA
23
n
23
ALA
23
A
LYS
24
n
24
LYS
24
A
ASN
25
n
25
ASN
25
A
LYS
26
n
26
LYS
26
A
VAL
27
n
27
VAL
27
A
GLY
28
n
28
GLY
28
A
PRO
29
n
29
PRO
29
A
VAL
30
n
30
VAL
30
A
LEU
31
n
31
LEU
31
A
ASN
32
n
32
ASN
32
A
GLY
33
n
33
GLY
33
A
LEU
34
n
34
LEU
34
A
PHE
35
n
35
PHE
35
A
GLY
36
n
36
GLY
36
A
ARG
37
n
37
ARG
37
A
HIS
38
n
38
HIS
38
A
SER
39
n
39
SER
39
A
GLY
40
n
40
GLY
40
A
THR
41
n
41
THR
41
A
ILE
42
n
42
ILE
42
A
GLU
43
n
43
GLU
43
A
GLY
44
n
44
GLY
44
A
PHE
45
n
45
PHE
45
A
ALA
46
n
46
ALA
46
A
TYR
47
n
47
TYR
47
A
SER
48
n
48
SER
48
A
ASP
49
n
49
ASP
49
A
ALA
50
n
50
ALA
50
A
ASN
51
n
51
ASN
51
A
LYS
52
n
52
LYS
52
A
ASN
53
n
53
ASN
53
A
SER
54
n
54
SER
54
A
GLY
55
n
55
GLY
55
A
ILE
56
n
56
ILE
56
A
THR
57
n
57
THR
57
A
TRP
58
n
58
TRP
58
A
THR
59
n
59
THR
59
A
GLU
60
n
60
GLU
60
A
GLU
61
n
61
GLU
61
A
VAL
62
n
62
VAL
62
A
PHE
63
n
63
PHE
63
A
ARG
64
n
64
ARG
64
A
GLU
65
n
65
GLU
65
A
TYR
66
n
66
TYR
66
A
ILE
67
n
67
ILE
67
A
ARG
68
n
68
ARG
68
A
ASP
69
n
69
ASP
69
A
PRO
70
n
70
PRO
70
A
LYS
71
n
71
LYS
71
A
ALA
72
n
72
ALA
72
A
LYS
73
n
73
LYS
73
A
ILE
74
n
74
ILE
74
A
PRO
75
n
75
PRO
75
A
GLY
76
n
76
GLY
76
A
THR
77
n
77
THR
77
A
LYS
78
n
78
LYS
78
A
MET
79
n
79
MET
79
A
ILE
80
n
80
ILE
80
A
PHE
81
n
81
PHE
81
A
ALA
82
n
82
ALA
82
A
GLY
83
n
83
GLY
83
A
VAL
84
n
84
VAL
84
A
LYS
85
n
85
LYS
85
A
ASP
86
n
86
ASP
86
A
GLU
87
n
87
GLU
87
A
GLN
88
n
88
GLN
88
A
LYS
89
n
89
LYS
89
A
VAL
90
n
90
VAL
90
A
SER
91
n
91
SER
91
A
ASP
92
n
92
ASP
92
A
LEU
93
n
93
LEU
93
A
ILE
94
n
94
ILE
94
A
ALA
95
n
95
ALA
95
A
TYR
96
n
96
TYR
96
A
ILE
97
n
97
ILE
97
A
LYS
98
n
98
LYS
98
A
GLN
99
n
99
GLN
99
A
PHE
100
n
100
PHE
100
A
ASN
101
n
101
ASN
101
A
ALA
102
n
102
ALA
102
A
ASP
103
n
103
ASP
103
A
GLY
104
n
104
GLY
104
A
SER
105
n
105
SER
105
A
LYS
106
n
106
LYS
106
A
LYS
107
n
107
LYS
107
A
author_defined_assembly
1
monomeric
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
NA
HEC
1_555
92.8
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
NB
HEC
1_555
99.5
A
HEC
108
B
NA
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
NB
HEC
1_555
89.7
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
NC
HEC
1_555
88.3
A
HEC
108
B
NA
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
NC
HEC
1_555
178.6
A
HEC
108
B
NB
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
NC
HEC
1_555
89.3
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
ND
HEC
1_555
84.6
A
HEC
108
B
NA
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
ND
HEC
1_555
90.5
A
HEC
108
B
NB
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
ND
HEC
1_555
175.9
A
HEC
108
B
NC
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
HEC
108
B
ND
HEC
1_555
90.5
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
108
B
FE
HEC
1_555
A
MET
79
A
SD
MET
79
1_555
167.8
A
HEC
108
B
NA
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
MET
79
A
SD
MET
79
1_555
88.2
A
HEC
108
B
NB
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
MET
79
A
SD
MET
79
1_555
92.7
A
HEC
108
B
NC
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
MET
79
A
SD
MET
79
1_555
90.9
A
HEC
108
B
ND
HEC
1_555
A
HEC
108
B
FE
HEC
1_555
A
MET
79
A
SD
MET
79
1_555
83.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
15.64
2.20
113.40
129.04
A
A
A
CA
CB
CG
LYS
LYS
LYS
24
24
24
N
1
3.16
0.50
120.30
123.46
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
37
37
37
N
1
-11.50
1.70
113.60
102.10
A
A
A
CA
CB
CG
HIS
HIS
HIS
38
38
38
N
1
10.19
0.90
118.30
128.49
A
A
A
CB
CG
OD1
ASP
ASP
ASP
49
49
49
N
1
-6.84
0.90
118.30
111.46
A
A
A
CB
CG
OD2
ASP
ASP
ASP
49
49
49
N
1
3.89
0.50
120.30
124.19
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
64
64
64
N
1
-16.48
2.70
111.00
94.52
A
A
A
N
CA
C
ALA
ALA
ALA
82
82
82
N
1
8.41
0.90
118.30
126.71
A
A
A
CB
CG
OD2
ASP
ASP
ASP
86
86
86
N
1
20.09
2.50
121.70
141.79
A
A
A
C
N
CA
ASN
ALA
ALA
101
102
102
Y
1
-6.43
0.90
118.30
111.87
A
A
A
CB
CG
OD2
ASP
ASP
ASP
103
103
103
N
1
A
A
OE2
OE2
GLU
GLU
87
87
2.14
1_555
5_555
1
A
A
OD1
ND2
ASP
ASN
49
101
2.19
1_555
2_544
1
A
LYS
26
-151.26
-134.06
1
A
THR
57
55.21
93.76
1
A
TRP
58
-64.59
94.27
1
A
TYR
66
-60.96
-70.09
1
A
ASP
69
-160.85
90.40
1
A
ALA
95
-161.20
-45.28
1
A
PHE
100
-90.89
-70.37
1
A
ASN
101
57.64
141.32
1
A
ALA
102
44.43
-63.60
1
A
SER
105
-153.80
-147.36
0.2190000
0.2190000
3.0
1
3.0
0
864
43
0
821
0.012
model building
X-PLOR
refinement
PROLSQ
refinement
X-PLOR
phasing
X-PLOR
CYTOCHROME C2
APPLICATION OF AN AUTOMATIC MOLECULAR REPLACEMENT PROCEDURE TO CRYSTAL STRUCTURE OF CYTOCHROME C2 FROM RHODOPSEUDOMONAS VIRIDIS
1
N
N
2
N
N
A
ASP
2
A
ASP
2
HELX_P
A
PHE
10
A
PHE
10
1
A
9
A
PHE
10
A
PHE
10
HELX_P
A
LEU
14
A
LEU
14
1
B
5
A
SER
48
A
SER
48
HELX_P
A
ASN
53
A
ASN
53
1
C
6
A
THR
59
A
THR
59
HELX_P
A
ASP
69
A
ASP
69
1
D
11
A
ASP
69
A
ASP
69
HELX_P
A
ILE
74
A
ILE
74
1
E
6
A
ASP
86
A
ASP
86
HELX_P
A
TYR
96
A
TYR
96
1
F
11
covale
1.931
none
A
CYS
13
A
SG
CYS
13
1_555
A
HEC
108
B
CAB
HEC
1_555
covale
2.058
none
A
CYS
16
A
SG
CYS
16
1_555
A
HEC
108
B
CAC
HEC
1_555
metalc
1.876
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
108
B
FE
HEC
1_555
metalc
2.314
A
MET
79
A
SD
MET
79
1_555
A
HEC
108
B
FE
HEC
1_555
ELECTRON TRANSPORT(HEME PROTEIN)
ELECTRON TRANSPORT(HEME PROTEIN)
CYC2_RHOVI
UNP
1
1
P00083
MRKLVFGLFVLAASVAPAAAQDAASGEQVFKQCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTE
EVFREYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQFNADGSKK
21
127
1CRY
1
107
P00083
A
1
1
107
BINDING SITE FOR RESIDUE HEC A 108
A
HEC
108
Software
22
A
GLN
12
A
GLN
12
22
1_555
A
CYS
13
A
CYS
13
22
1_555
A
CYS
16
A
CYS
16
22
1_555
A
HIS
17
A
HIS
17
22
1_555
A
VAL
27
A
VAL
27
22
6_555
A
VAL
27
A
VAL
27
22
1_555
A
ARG
37
A
ARG
37
22
1_555
A
SER
39
A
SER
39
22
1_555
A
GLY
40
A
GLY
40
22
1_555
A
ILE
42
A
ILE
42
22
1_555
A
PHE
45
A
PHE
45
22
1_555
A
TYR
47
A
TYR
47
22
1_555
A
SER
48
A
SER
48
22
1_555
A
ASN
51
A
ASN
51
22
1_555
A
TRP
58
A
TRP
58
22
1_555
A
PHE
63
A
PHE
63
22
1_555
A
ILE
67
A
ILE
67
22
1_555
A
THR
77
A
THR
77
22
1_555
A
LYS
78
A
LYS
78
22
1_555
A
MET
79
A
MET
79
22
1_555
A
ILE
80
A
ILE
80
22
1_555
A
PHE
81
A
PHE
81
22
1_555
154
P 32 2 1