0.013135 0.007584 0.000000 0.000000 0.015167 0.000000 0.000000 0.000000 0.024752 0.00000 0.00000 0.00000 Miki, K. Sogabe, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 76.130 76.130 40.400 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H34 Fe N4 O4 618.503 HEME C non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 50 271 275 10.1107/S0907444993013952 15299438 Application of an automatic molecular-replacement procedure to crystal structure analysis of cytochrome c2 from Rhodopseudomonas viridis. 1994 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 11667.220 CYTOCHROME C2 1 man polymer 618.503 HEME C 1 syn non-polymer no no QDAASGEQVFKQCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKMI FAGVKDEQKVSDLIAYIKQFNADGSKK QDAASGEQVFKQCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKMI FAGVKDEQKVSDLIAYIKQFNADGSKK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Blastochloris sample 1079 Blastochloris viridis 2.90 57.52 pdbx_database_status struct_conf struct_conf_type software struct_conn software atom_site chem_comp entity pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Derived calculations Other Data collection Derived calculations Refinement description Data collection Refinement description Atomic model Data collection Derived calculations Non-polymer description Structure summary 1 0 1994-04-30 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 1 4 2019-07-17 1 5 2019-08-14 2 0 2021-03-03 _pdbx_database_status.process_site _software.classification _struct_conn.pdbx_leaving_atom_flag _software.classification _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.type_symbol _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.name _chem_comp.pdbx_synonyms _entity.formula_weight _entity.pdbx_description _pdbx_entity_nonpoly.comp_id _pdbx_entity_nonpoly.name _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1993-12-27 REL HEC HEME C HEM 108 2 HEC HEC 108 A GLN 1 n 1 GLN 1 A ASP 2 n 2 ASP 2 A ALA 3 n 3 ALA 3 A ALA 4 n 4 ALA 4 A SER 5 n 5 SER 5 A GLY 6 n 6 GLY 6 A GLU 7 n 7 GLU 7 A GLN 8 n 8 GLN 8 A VAL 9 n 9 VAL 9 A PHE 10 n 10 PHE 10 A LYS 11 n 11 LYS 11 A GLN 12 n 12 GLN 12 A CYS 13 n 13 CYS 13 A LEU 14 n 14 LEU 14 A VAL 15 n 15 VAL 15 A CYS 16 n 16 CYS 16 A HIS 17 n 17 HIS 17 A SER 18 n 18 SER 18 A ILE 19 n 19 ILE 19 A GLY 20 n 20 GLY 20 A PRO 21 n 21 PRO 21 A GLY 22 n 22 GLY 22 A ALA 23 n 23 ALA 23 A LYS 24 n 24 LYS 24 A ASN 25 n 25 ASN 25 A LYS 26 n 26 LYS 26 A VAL 27 n 27 VAL 27 A GLY 28 n 28 GLY 28 A PRO 29 n 29 PRO 29 A VAL 30 n 30 VAL 30 A LEU 31 n 31 LEU 31 A ASN 32 n 32 ASN 32 A GLY 33 n 33 GLY 33 A LEU 34 n 34 LEU 34 A PHE 35 n 35 PHE 35 A GLY 36 n 36 GLY 36 A ARG 37 n 37 ARG 37 A HIS 38 n 38 HIS 38 A SER 39 n 39 SER 39 A GLY 40 n 40 GLY 40 A THR 41 n 41 THR 41 A ILE 42 n 42 ILE 42 A GLU 43 n 43 GLU 43 A GLY 44 n 44 GLY 44 A PHE 45 n 45 PHE 45 A ALA 46 n 46 ALA 46 A TYR 47 n 47 TYR 47 A SER 48 n 48 SER 48 A ASP 49 n 49 ASP 49 A ALA 50 n 50 ALA 50 A ASN 51 n 51 ASN 51 A LYS 52 n 52 LYS 52 A ASN 53 n 53 ASN 53 A SER 54 n 54 SER 54 A GLY 55 n 55 GLY 55 A ILE 56 n 56 ILE 56 A THR 57 n 57 THR 57 A TRP 58 n 58 TRP 58 A THR 59 n 59 THR 59 A GLU 60 n 60 GLU 60 A GLU 61 n 61 GLU 61 A VAL 62 n 62 VAL 62 A PHE 63 n 63 PHE 63 A ARG 64 n 64 ARG 64 A GLU 65 n 65 GLU 65 A TYR 66 n 66 TYR 66 A ILE 67 n 67 ILE 67 A ARG 68 n 68 ARG 68 A ASP 69 n 69 ASP 69 A PRO 70 n 70 PRO 70 A LYS 71 n 71 LYS 71 A ALA 72 n 72 ALA 72 A LYS 73 n 73 LYS 73 A ILE 74 n 74 ILE 74 A PRO 75 n 75 PRO 75 A GLY 76 n 76 GLY 76 A THR 77 n 77 THR 77 A LYS 78 n 78 LYS 78 A MET 79 n 79 MET 79 A ILE 80 n 80 ILE 80 A PHE 81 n 81 PHE 81 A ALA 82 n 82 ALA 82 A GLY 83 n 83 GLY 83 A VAL 84 n 84 VAL 84 A LYS 85 n 85 LYS 85 A ASP 86 n 86 ASP 86 A GLU 87 n 87 GLU 87 A GLN 88 n 88 GLN 88 A LYS 89 n 89 LYS 89 A VAL 90 n 90 VAL 90 A SER 91 n 91 SER 91 A ASP 92 n 92 ASP 92 A LEU 93 n 93 LEU 93 A ILE 94 n 94 ILE 94 A ALA 95 n 95 ALA 95 A TYR 96 n 96 TYR 96 A ILE 97 n 97 ILE 97 A LYS 98 n 98 LYS 98 A GLN 99 n 99 GLN 99 A PHE 100 n 100 PHE 100 A ASN 101 n 101 ASN 101 A ALA 102 n 102 ALA 102 A ASP 103 n 103 ASP 103 A GLY 104 n 104 GLY 104 A SER 105 n 105 SER 105 A LYS 106 n 106 LYS 106 A LYS 107 n 107 LYS 107 A author_defined_assembly 1 monomeric A HIS 17 A NE2 HIS 17 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B NA HEC 1_555 92.8 A HIS 17 A NE2 HIS 17 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B NB HEC 1_555 99.5 A HEC 108 B NA HEC 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B NB HEC 1_555 89.7 A HIS 17 A NE2 HIS 17 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B NC HEC 1_555 88.3 A HEC 108 B NA HEC 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B NC HEC 1_555 178.6 A HEC 108 B NB HEC 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B NC HEC 1_555 89.3 A HIS 17 A NE2 HIS 17 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B ND HEC 1_555 84.6 A HEC 108 B NA HEC 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B ND HEC 1_555 90.5 A HEC 108 B NB HEC 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B ND HEC 1_555 175.9 A HEC 108 B NC HEC 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B ND HEC 1_555 90.5 A HIS 17 A NE2 HIS 17 1_555 A HEC 108 B FE HEC 1_555 A MET 79 A SD MET 79 1_555 167.8 A HEC 108 B NA HEC 1_555 A HEC 108 B FE HEC 1_555 A MET 79 A SD MET 79 1_555 88.2 A HEC 108 B NB HEC 1_555 A HEC 108 B FE HEC 1_555 A MET 79 A SD MET 79 1_555 92.7 A HEC 108 B NC HEC 1_555 A HEC 108 B FE HEC 1_555 A MET 79 A SD MET 79 1_555 90.9 A HEC 108 B ND HEC 1_555 A HEC 108 B FE HEC 1_555 A MET 79 A SD MET 79 1_555 83.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 15.64 2.20 113.40 129.04 A A A CA CB CG LYS LYS LYS 24 24 24 N 1 3.16 0.50 120.30 123.46 A A A NE CZ NH1 ARG ARG ARG 37 37 37 N 1 -11.50 1.70 113.60 102.10 A A A CA CB CG HIS HIS HIS 38 38 38 N 1 10.19 0.90 118.30 128.49 A A A CB CG OD1 ASP ASP ASP 49 49 49 N 1 -6.84 0.90 118.30 111.46 A A A CB CG OD2 ASP ASP ASP 49 49 49 N 1 3.89 0.50 120.30 124.19 A A A NE CZ NH1 ARG ARG ARG 64 64 64 N 1 -16.48 2.70 111.00 94.52 A A A N CA C ALA ALA ALA 82 82 82 N 1 8.41 0.90 118.30 126.71 A A A CB CG OD2 ASP ASP ASP 86 86 86 N 1 20.09 2.50 121.70 141.79 A A A C N CA ASN ALA ALA 101 102 102 Y 1 -6.43 0.90 118.30 111.87 A A A CB CG OD2 ASP ASP ASP 103 103 103 N 1 A A OE2 OE2 GLU GLU 87 87 2.14 1_555 5_555 1 A A OD1 ND2 ASP ASN 49 101 2.19 1_555 2_544 1 A LYS 26 -151.26 -134.06 1 A THR 57 55.21 93.76 1 A TRP 58 -64.59 94.27 1 A TYR 66 -60.96 -70.09 1 A ASP 69 -160.85 90.40 1 A ALA 95 -161.20 -45.28 1 A PHE 100 -90.89 -70.37 1 A ASN 101 57.64 141.32 1 A ALA 102 44.43 -63.60 1 A SER 105 -153.80 -147.36 0.2190000 0.2190000 3.0 1 3.0 0 864 43 0 821 0.012 model building X-PLOR refinement PROLSQ refinement X-PLOR phasing X-PLOR CYTOCHROME C2 APPLICATION OF AN AUTOMATIC MOLECULAR REPLACEMENT PROCEDURE TO CRYSTAL STRUCTURE OF CYTOCHROME C2 FROM RHODOPSEUDOMONAS VIRIDIS 1 N N 2 N N A ASP 2 A ASP 2 HELX_P A PHE 10 A PHE 10 1 A 9 A PHE 10 A PHE 10 HELX_P A LEU 14 A LEU 14 1 B 5 A SER 48 A SER 48 HELX_P A ASN 53 A ASN 53 1 C 6 A THR 59 A THR 59 HELX_P A ASP 69 A ASP 69 1 D 11 A ASP 69 A ASP 69 HELX_P A ILE 74 A ILE 74 1 E 6 A ASP 86 A ASP 86 HELX_P A TYR 96 A TYR 96 1 F 11 covale 1.931 none A CYS 13 A SG CYS 13 1_555 A HEC 108 B CAB HEC 1_555 covale 2.058 none A CYS 16 A SG CYS 16 1_555 A HEC 108 B CAC HEC 1_555 metalc 1.876 A HIS 17 A NE2 HIS 17 1_555 A HEC 108 B FE HEC 1_555 metalc 2.314 A MET 79 A SD MET 79 1_555 A HEC 108 B FE HEC 1_555 ELECTRON TRANSPORT(HEME PROTEIN) ELECTRON TRANSPORT(HEME PROTEIN) CYC2_RHOVI UNP 1 1 P00083 MRKLVFGLFVLAASVAPAAAQDAASGEQVFKQCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTE EVFREYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQFNADGSKK 21 127 1CRY 1 107 P00083 A 1 1 107 BINDING SITE FOR RESIDUE HEC A 108 A HEC 108 Software 22 A GLN 12 A GLN 12 22 1_555 A CYS 13 A CYS 13 22 1_555 A CYS 16 A CYS 16 22 1_555 A HIS 17 A HIS 17 22 1_555 A VAL 27 A VAL 27 22 6_555 A VAL 27 A VAL 27 22 1_555 A ARG 37 A ARG 37 22 1_555 A SER 39 A SER 39 22 1_555 A GLY 40 A GLY 40 22 1_555 A ILE 42 A ILE 42 22 1_555 A PHE 45 A PHE 45 22 1_555 A TYR 47 A TYR 47 22 1_555 A SER 48 A SER 48 22 1_555 A ASN 51 A ASN 51 22 1_555 A TRP 58 A TRP 58 22 1_555 A PHE 63 A PHE 63 22 1_555 A ILE 67 A ILE 67 22 1_555 A THR 77 A THR 77 22 1_555 A LYS 78 A LYS 78 22 1_555 A MET 79 A MET 79 22 1_555 A ILE 80 A ILE 80 22 1_555 A PHE 81 A PHE 81 22 1_555 154 P 32 2 1