0.036023
0.000000
0.004295
0.000000
0.014730
0.000000
0.000000
0.000000
0.016288
0.00000
0.00000
0.00000
Lewis, F.D.
Liu, X.
Wu, Y.
Miller, S.E.
Wasielewski, M.R.
Letsinger, R.L.
Sanishvili, R.
Joachimiak, A.
Tereshko, V.
Egli, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.0
96.8
90.0
27.76
67.89
61.83
C9 H12 Br N2 O8 P
387.078
n
5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
C18 H31 O7 P
390.408
PHOSPHORIC ACID MONO-[2-(4-{2-[4-(2-HYDROXY-ETHOXY)-CYCLOHEXYLIDENE]-ETHYLIDENE}-CYCLOHEXYLOXY) -ETHYL] ESTER
STILBENEDIETHER NUCLEOTIDE LINKER
non-polymer
Sr 2
87.620
STRONTIUM ION
non-polymer
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
O
N
8
N
O
N
9
N
BR
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
O
N
35
N
P
N
36
N
O
N
37
N
O
N
38
N
O
N
39
N
C
N
40
R
C
N
41
N
O
N
42
S
C
N
43
N
O
N
44
N
C
N
45
R
C
Y
46
N
N
Y
47
N
C
Y
48
N
N
Y
49
N
C
Y
50
N
C
N
51
N
N
Y
52
N
N
Y
53
N
C
Y
54
N
N
Y
55
N
C
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
O
N
71
N
P
N
72
N
O
N
73
N
O
N
74
N
O
N
75
N
C
N
76
R
C
N
77
N
O
N
78
S
C
N
79
N
O
N
80
N
C
N
81
R
C
N
82
N
N
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
C
N
87
N
N
N
88
N
C
N
89
N
C
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
O
N
105
N
P
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
C
N
110
R
C
N
111
N
O
N
112
S
C
N
113
N
O
N
114
N
C
N
115
R
C
Y
116
N
N
Y
117
N
C
Y
118
N
N
Y
119
N
C
N
120
N
C
N
121
N
O
N
122
N
N
N
123
N
C
N
124
N
N
N
125
N
N
Y
126
N
C
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
O
N
142
N
P
N
143
N
O
N
144
N
O
N
145
N
O
N
146
N
C
N
147
R
C
N
148
N
O
N
149
S
C
N
150
N
O
N
151
N
C
N
152
R
C
N
153
N
N
N
154
N
C
N
155
N
O
N
156
N
N
N
157
N
C
N
158
N
O
N
159
N
C
N
160
N
C
N
161
N
C
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
P
N
181
N
O
N
182
N
O
N
183
N
O
N
184
N
O
N
185
N
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
R
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
R
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
SR
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
doub
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
Y
58
N
sing
Y
59
N
sing
Y
60
N
doub
N
61
N
sing
Y
62
N
sing
Y
63
N
sing
Y
64
N
doub
N
65
N
sing
Y
66
N
doub
N
67
N
sing
N
68
N
sing
Y
69
N
sing
Y
70
N
doub
N
71
N
sing
Y
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
Y
131
N
sing
Y
132
N
sing
Y
133
N
doub
N
134
N
sing
Y
135
N
sing
N
136
N
sing
Y
137
N
doub
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
121
9905
9906
10.1021/ja991934u
-1
Structure and Photoinduced Electron Transfer in Exceptionally Stable Synthetic DNA Hairpins with Stilbenediether Linkers
1999
10.2210/pdb1cs7/pdb
pdb_00001cs7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1999-02-06
APS-1
SINGLE WAVELENGTH
M
x-ray
1
1.0
19-ID
APS
SYNCHROTRON
APS BEAMLINE 19-ID
4098.678
5'-D(GP*(BRU)P*TP*TP*TP*GP*(S02)*CP*AP*AP*AP*AP*C)-3'
4
syn
polymer
87.620
STRONTIUM ION
4
syn
non-polymer
18.015
water
11
nat
water
no
yes
(DG)(BRU)(DT)(DT)(DT)(DG)(S02)(DC)(DA)(DA)(DA)(DA)(DC)
GUTTTGXCAAAAC
A,B,C,D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
1
3.42
64.05
VAPOR DIFFUSION, HANGING DROP
6.3
OLIGONUCLEOTIDE, SRCL2, NA-CACODYLATE BUFFER, 2-METHYL-2,4-PENTANEDIOL, pH 6.3, VAPOR DIFFUSION, HANGING DROP at 298K
298
SRCL2
1
SODIUM CACODYLATE BUFFER
1
MPD
1
MPD
2
5.042
1
19
A
1
A
14
0.444
A_DG1:DC14_A
1
-7.993
-0.161
-0.054
-0.070
-3.341
1
20
A
2
A
13
-1.018
A_BRU2:DA13_A
2
-14.300
0.009
0.517
-0.135
-4.768
1
20
A
3
A
12
-2.024
A_DT3:DA12_A
3
-6.098
-0.066
0.729
-0.143
-3.860
1
20
A
4
A
11
-1.078
A_DT4:DA11_A
4
-13.531
-0.088
-0.040
-0.088
-8.223
1
20
A
5
A
10
3.516
A_DT5:DA10_A
5
-10.197
-0.020
0.366
-0.146
14.224
1
19
A
6
A
9
0.062
A_DG6:DC9_A
6
0.105
-0.158
0.670
-0.083
-9.084
1
19
B
101
B
114
-1.301
B_DG101:DC114_B
7
-5.160
-0.144
-0.178
-0.046
-15.916
1
20
B
102
B
113
-3.980
B_BRU102:DA113_B
8
-18.051
-0.144
0.664
-0.095
-6.568
1
20
B
103
B
112
-3.686
B_DT103:DA112_B
9
-23.690
-0.142
0.398
-0.088
-4.499
1
20
B
104
B
111
-2.482
B_DT104:DA111_B
10
-13.375
-0.104
0.012
-0.022
-10.138
1
20
B
105
B
110
2.601
B_DT105:DA110_B
11
-11.096
-0.067
-0.127
-0.099
6.209
1
19
B
106
B
109
-1.548
B_DG106:DC109_B
12
2.143
-0.117
-0.053
-0.075
0.985
1
19
C
201
C
214
-0.298
C_DG201:DC214_C
13
-6.738
-0.162
0.253
-0.078
-5.830
1
20
C
202
C
213
-4.465
C_BRU202:DA213_C
14
-9.938
-0.114
0.574
-0.037
-5.383
1
20
C
203
C
212
1.618
C_DT203:DA212_C
15
-18.709
-0.081
0.192
-0.112
-13.407
1
20
C
204
C
211
-3.866
C_DT204:DA211_C
16
-15.180
-0.121
0.824
-0.192
-16.416
1
20
C
205
C
210
6.417
C_DT205:DA210_C
17
-7.365
-0.031
0.630
-0.161
14.864
1
19
C
206
C
209
-3.692
C_DG206:DC209_C
18
5.705
-0.093
0.854
-0.164
-4.282
1
19
D
301
D
314
2.849
D_DG301:DC314_D
19
-10.841
-0.169
-0.380
-0.042
-8.273
1
20
D
302
D
313
3.737
D_BRU302:DA313_D
20
-14.807
0.040
0.459
-0.111
-5.433
1
20
D
303
D
312
2.029
D_DT303:DA312_D
21
-17.807
-0.081
0.384
-0.099
-7.053
1
20
D
304
D
311
-3.824
D_DT304:DA311_D
22
-12.855
-0.186
0.377
-0.060
7.755
1
20
D
305
D
310
-0.009
D_DT305:DA310_D
23
-15.217
-0.011
0.179
-0.092
12.706
1
19
D
306
D
309
-3.205
D_DG306:DC309_D
24
-9.561
-0.081
0.558
-0.057
3.563
32.984
A
A
1
2
-4.661
A
A
14
13
3.470
-2.638
-0.420
-1.008
AA_DG1BRU2:DA13DC14_AA
1
-3.732
6.594
32.675
-1.292
0.055
3.338
37.438
A
A
2
3
-10.373
A
A
13
12
3.276
-6.612
0.039
-0.787
AA_BRU2DT3:DA12DA13_AA
2
-4.236
6.645
36.634
-0.338
-0.629
2.856
45.297
A
A
3
4
-10.070
A
A
12
11
2.947
-7.679
-0.122
-0.107
AA_DT3DT4:DA11DA12_AA
3
8.544
-11.204
43.890
0.477
0.843
3.390
33.739
A
A
4
5
0.189
A
A
11
10
3.397
0.109
0.316
-0.249
AA_DT4DT5:DA10DA11_AA
4
-0.611
1.052
33.734
-0.448
-0.648
3.127
35.689
A
A
5
6
5.165
A
A
10
9
3.137
3.156
0.399
0.667
AA_DT5DG6:DC9DA10_AA
5
-3.685
6.031
35.368
0.650
-1.164
3.401
33.446
B
B
101
102
3.229
B
B
114
113
3.393
1.847
-0.653
-0.914
BB_DG101BRU102:DA113DC114_BB
6
-6.230
10.890
32.827
-1.909
0.056
2.983
39.544
B
B
102
103
-15.923
B
B
113
112
2.892
-10.649
-0.406
-0.696
BB_BRU102DT103:DA112DA113_BB
7
-0.944
1.412
38.127
0.116
0.499
2.994
44.764
B
B
103
104
-8.900
B
B
112
111
2.978
-6.743
0.474
-0.100
BB_DT103DT104:DA111DA112_BB
8
4.679
-6.176
44.043
0.435
-0.230
3.481
33.555
B
B
104
105
4.156
B
B
111
110
3.443
2.390
0.405
0.339
BB_DT104DT105:DA110DA111_BB
9
4.690
-8.156
33.151
0.170
0.119
3.566
31.998
B
B
105
106
6.569
B
B
110
109
3.463
3.613
0.288
1.245
BB_DT105DG106:DC109DA110_BB
10
-1.141
2.075
31.779
1.555
-0.745
3.499
34.073
C
C
201
202
-4.245
C
C
214
213
3.418
-2.485
-0.276
-1.143
CC_DG201BRU202:DA213DC214_CC
11
-1.636
2.795
33.947
-1.532
0.195
3.082
36.211
C
C
202
203
-5.548
C
C
213
212
3.081
-3.435
-0.035
-0.418
CC_BRU202DT203:DA212DA213_CC
12
4.366
-7.050
35.797
-0.214
0.638
3.350
43.181
C
C
203
204
-3.868
C
C
212
211
3.355
-2.833
-0.138
-0.344
CC_DT203DT204:DA211DA212_CC
13
-7.114
9.713
42.529
-0.181
-0.533
3.417
36.701
C
C
204
205
-10.998
C
C
211
210
3.400
-6.875
0.412
-0.276
CC_DT204DT205:DA210DA211_CC
14
3.722
-5.954
35.886
0.553
-0.118
2.894
32.009
C
C
205
206
9.373
C
C
210
209
2.811
5.121
-0.224
0.780
CC_DT205DG206:DC209DA210_CC
15
-5.686
10.408
31.104
0.596
-0.503
3.332
34.244
D
D
301
302
-2.560
D
D
314
313
3.312
-1.499
-0.206
-0.923
DD_DG301BRU302:DA313DC314_DD
16
-6.248
10.671
33.653
-1.326
-0.658
3.107
40.345
D
D
302
303
-7.317
D
D
313
312
3.073
-5.034
-0.502
-0.584
DD_BRU302DT303:DA312DA313_DD
17
1.087
-1.580
40.029
-0.309
0.844
3.120
41.104
D
D
303
304
-7.077
D
D
312
311
3.127
-4.958
0.172
-0.106
DD_DT303DT304:DA311DA312_DD
18
0.655
-0.935
40.812
0.364
-0.177
2.976
36.079
D
D
304
305
-13.177
D
D
311
310
2.964
-8.072
0.448
-0.227
DD_DT304DT305:DA310DA311_DD
19
4.891
-7.984
34.863
0.690
-0.082
3.227
38.267
D
D
305
306
34.423
D
D
310
309
3.395
21.346
-0.132
0.690
DD_DT305DG306:DC309DA310_DD
20
-1.917
3.091
31.890
-1.934
-0.067
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-10-19
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
NDB
Y
RCSB
1999-08-17
REL
REL
SR
STRONTIUM ION
HOH
water
SR
402
2
SR
SR
402
A
SR
404
2
SR
SR
404
B
SR
403
2
SR
SR
403
C
SR
401
2
SR
SR
401
D
TIP
410
3
HOH
HOH
410
A
TIP
413
3
HOH
HOH
413
A
TIP
414
3
HOH
HOH
414
A
TIP
415
3
HOH
HOH
415
A
TIP
405
3
HOH
HOH
405
B
TIP
407
3
HOH
HOH
407
B
TIP
409
3
HOH
HOH
409
B
TIP
406
3
HOH
HOH
406
C
TIP
408
3
HOH
HOH
408
D
TIP
411
3
HOH
HOH
411
D
TIP
412
3
HOH
HOH
412
D
G
1
n
1
DG
1
A
BRU
2
n
2
BRU
2
A
T
3
n
3
DT
3
A
T
4
n
4
DT
4
A
T
5
n
5
DT
5
A
G
6
n
6
DG
6
A
S02
7
n
7
S02
7
A
C
9
n
8
DC
9
A
A
10
n
9
DA
10
A
A
11
n
10
DA
11
A
A
12
n
11
DA
12
A
A
13
n
12
DA
13
A
C
14
n
13
DC
14
A
G
101
n
1
DG
101
B
BRU
102
n
2
BRU
102
B
T
103
n
3
DT
103
B
T
104
n
4
DT
104
B
T
105
n
5
DT
105
B
G
106
n
6
DG
106
B
S02
107
n
7
S02
107
B
C
109
n
8
DC
109
B
A
110
n
9
DA
110
B
A
111
n
10
DA
111
B
A
112
n
11
DA
112
B
A
113
n
12
DA
113
B
C
114
n
13
DC
114
B
G
201
n
1
DG
201
C
BRU
202
n
2
BRU
202
C
T
203
n
3
DT
203
C
T
204
n
4
DT
204
C
T
205
n
5
DT
205
C
G
206
n
6
DG
206
C
S02
207
n
7
S02
207
C
C
209
n
8
DC
209
C
A
210
n
9
DA
210
C
A
211
n
10
DA
211
C
A
212
n
11
DA
212
C
A
213
n
12
DA
213
C
C
214
n
13
DC
214
C
G
301
n
1
DG
301
D
BRU
302
n
2
BRU
302
D
T
303
n
3
DT
303
D
T
304
n
4
DT
304
D
T
305
n
5
DT
305
D
G
306
n
6
DG
306
D
S02
307
n
7
S02
307
D
C
309
n
8
DC
309
D
A
310
n
9
DA
310
D
A
311
n
10
DA
311
D
A
312
n
11
DA
312
D
A
313
n
12
DA
313
D
C
314
n
13
DC
314
D
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
A
BRU
2
A
BRU
2
DU
B
BRU
102
B
BRU
2
DU
C
BRU
202
C
BRU
2
DU
D
BRU
302
D
BRU
2
DU
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
C4A
S02
7
PLANAR
1
A
C4B
S02
7
PLANAR
1
B
C4A
S02
107
PLANAR
1
B
C4B
S02
107
PLANAR
1
C
C4A
S02
207
PLANAR
1
C
C4B
S02
207
PLANAR
1
D
C4A
S02
307
PLANAR
1
D
C4B
S02
307
PLANAR
1
9.18
1.10
109.80
118.98
A
A
A
C5'
C4'
O4'
DA
DA
DA
13
13
13
N
0.2660000
0.2570000
0.2570000
3.2
8.0
202
3046
2864
7
80.1
RANDOM
1
THROUGHOUT
0.5
MOLECULAR REPLACEMENT
PARKINSON et al.
3.2
8.0
11
1087
4
1072
0
0.010
1.71
3.15
30.0
1CS7
3434
3434
0
0
0.0970000
1
3
97.1
0.0950000
3.15
3.26
99.0
phasing
AMoRE
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
covale
1.622
both
A
DG
1
A
O3'
DG
1
1_555
A
BRU
2
A
P
BRU
2
1_555
covale
1.599
both
A
BRU
2
A
O3'
BRU
2
1_555
A
DT
3
A
P
DT
3
1_555
covale
1.597
both
A
DG
6
A
O3'
DG
6
1_555
A
S02
7
A
P
S02
7
1_555
covale
1.600
one
A
S02
7
A
O3'
S02
7
1_555
A
DC
9
A
P
DC
8
1_555
covale
1.586
both
B
DG
101
B
O3'
DG
1
1_555
B
BRU
102
B
P
BRU
2
1_555
covale
1.610
both
B
BRU
102
B
O3'
BRU
2
1_555
B
DT
103
B
P
DT
3
1_555
covale
1.590
both
B
DG
106
B
O3'
DG
6
1_555
B
S02
107
B
P
S02
7
1_555
covale
1.605
one
B
S02
107
B
O3'
S02
7
1_555
B
DC
109
B
P
DC
8
1_555
covale
1.612
both
C
DG
201
C
O3'
DG
1
1_555
C
BRU
202
C
P
BRU
2
1_555
covale
1.595
both
C
BRU
202
C
O3'
BRU
2
1_555
C
DT
203
C
P
DT
3
1_555
covale
1.570
both
C
DG
206
C
O3'
DG
6
1_555
C
S02
207
C
P
S02
7
1_555
covale
1.603
one
C
S02
207
C
O3'
S02
7
1_555
C
DC
209
C
P
DC
8
1_555
covale
1.625
both
D
DG
301
D
O3'
DG
1
1_555
D
BRU
302
D
P
BRU
2
1_555
covale
1.587
both
D
BRU
302
D
O3'
BRU
2
1_555
D
DT
303
D
P
DT
3
1_555
covale
1.597
both
D
DG
306
D
O3'
DG
6
1_555
D
S02
307
D
P
S02
7
1_555
covale
1.606
one
D
S02
307
D
O3'
S02
7
1_555
D
DC
309
D
P
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
A
DC
14
A
N3
DC
13
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
A
DC
14
A
O2
DC
13
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
A
DC
14
A
N4
DC
13
1_555
hydrog
WATSON-CRICK
A
BRU
2
A
N3
BRU
2
1_555
A
DA
13
A
N1
DA
12
1_555
hydrog
WATSON-CRICK
A
BRU
2
A
O4
BRU
2
1_555
A
DA
13
A
N6
DA
12
1_555
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
A
DA
12
A
N1
DA
11
1_555
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
A
DA
12
A
N6
DA
11
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
A
DA
11
A
N1
DA
10
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
A
DA
11
A
N6
DA
10
1_555
hydrog
WATSON-CRICK
A
DT
5
A
N3
DT
5
1_555
A
DA
10
A
N1
DA
9
1_555
hydrog
WATSON-CRICK
A
DT
5
A
O4
DT
5
1_555
A
DA
10
A
N6
DA
9
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
A
DC
9
A
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
A
DC
9
A
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
A
DC
9
A
N4
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
101
B
N1
DG
1
1_555
B
DC
114
B
N3
DC
13
1_555
hydrog
WATSON-CRICK
B
DG
101
B
N2
DG
1
1_555
B
DC
114
B
O2
DC
13
1_555
hydrog
WATSON-CRICK
B
DG
101
B
O6
DG
1
1_555
B
DC
114
B
N4
DC
13
1_555
hydrog
BRU-DA PAIR
B
BRU
102
B
O4
BRU
2
1_555
B
DA
112
B
N6
DA
11
1_555
hydrog
WATSON-CRICK
B
BRU
102
B
N3
BRU
2
1_555
B
DA
113
B
N1
DA
12
1_555
hydrog
WATSON-CRICK
B
BRU
102
B
O4
BRU
2
1_555
B
DA
113
B
N6
DA
12
1_555
hydrog
WATSON-CRICK
B
DT
103
B
N3
DT
3
1_555
B
DA
112
B
N1
DA
11
1_555
hydrog
WATSON-CRICK
B
DT
103
B
O4
DT
3
1_555
B
DA
112
B
N6
DA
11
1_555
hydrog
WATSON-CRICK
B
DT
104
B
N3
DT
4
1_555
B
DA
111
B
N1
DA
10
1_555
hydrog
WATSON-CRICK
B
DT
104
B
O4
DT
4
1_555
B
DA
111
B
N6
DA
10
1_555
hydrog
WATSON-CRICK
B
DT
105
B
N3
DT
5
1_555
B
DA
110
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
B
DT
105
B
O4
DT
5
1_555
B
DA
110
B
N6
DA
9
1_555
hydrog
WATSON-CRICK
B
DG
106
B
N1
DG
6
1_555
B
DC
109
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
106
B
N2
DG
6
1_555
B
DC
109
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
106
B
O6
DG
6
1_555
B
DC
109
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
201
C
N1
DG
1
1_555
C
DC
214
C
N3
DC
13
1_555
hydrog
WATSON-CRICK
C
DG
201
C
N2
DG
1
1_555
C
DC
214
C
O2
DC
13
1_555
hydrog
WATSON-CRICK
C
DG
201
C
O6
DG
1
1_555
C
DC
214
C
N4
DC
13
1_555
hydrog
WATSON-CRICK
C
BRU
202
C
N3
BRU
2
1_555
C
DA
213
C
N1
DA
12
1_555
hydrog
WATSON-CRICK
C
BRU
202
C
O4
BRU
2
1_555
C
DA
213
C
N6
DA
12
1_555
hydrog
WATSON-CRICK
C
DT
203
C
N3
DT
3
1_555
C
DA
212
C
N1
DA
11
1_555
hydrog
WATSON-CRICK
C
DT
203
C
O4
DT
3
1_555
C
DA
212
C
N6
DA
11
1_555
hydrog
WATSON-CRICK
C
DT
204
C
N3
DT
4
1_555
C
DA
211
C
N1
DA
10
1_555
hydrog
WATSON-CRICK
C
DT
204
C
O4
DT
4
1_555
C
DA
211
C
N6
DA
10
1_555
hydrog
DT-DC MISPAIR
C
DT
205
C
O4
DT
5
1_555
C
DC
209
C
N4
DC
8
1_555
hydrog
WATSON-CRICK
C
DT
205
C
N3
DT
5
1_555
C
DA
210
C
N1
DA
9
1_555
hydrog
WATSON-CRICK
C
DT
205
C
O4
DT
5
1_555
C
DA
210
C
N6
DA
9
1_555
hydrog
WATSON-CRICK
C
DG
206
C
N1
DG
6
1_555
C
DC
209
C
N3
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
206
C
N2
DG
6
1_555
C
DC
209
C
O2
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
206
C
O6
DG
6
1_555
C
DC
209
C
N4
DC
8
1_555
hydrog
WATSON-CRICK
D
DG
301
D
N1
DG
1
1_555
D
DC
314
D
N3
DC
13
1_555
hydrog
WATSON-CRICK
D
DG
301
D
N2
DG
1
1_555
D
DC
314
D
O2
DC
13
1_555
hydrog
WATSON-CRICK
D
DG
301
D
O6
DG
1
1_555
D
DC
314
D
N4
DC
13
1_555
hydrog
WATSON-CRICK
D
BRU
302
D
N3
BRU
2
1_555
D
DA
313
D
N1
DA
12
1_555
hydrog
WATSON-CRICK
D
BRU
302
D
O4
BRU
2
1_555
D
DA
313
D
N6
DA
12
1_555
hydrog
WATSON-CRICK
D
DT
303
D
N3
DT
3
1_555
D
DA
312
D
N1
DA
11
1_555
hydrog
WATSON-CRICK
D
DT
303
D
O4
DT
3
1_555
D
DA
312
D
N6
DA
11
1_555
hydrog
WATSON-CRICK
D
DT
304
D
N3
DT
4
1_555
D
DA
311
D
N1
DA
10
1_555
hydrog
WATSON-CRICK
D
DT
304
D
O4
DT
4
1_555
D
DA
311
D
N6
DA
10
1_555
hydrog
WATSON-CRICK
D
DT
305
D
N3
DT
5
1_555
D
DA
310
D
N1
DA
9
1_555
hydrog
WATSON-CRICK
D
DT
305
D
O4
DT
5
1_555
D
DA
310
D
N6
DA
9
1_555
hydrog
WATSON-CRICK
D
DG
306
D
N1
DG
6
1_555
D
DC
309
D
N3
DC
8
1_555
hydrog
WATSON-CRICK
D
DG
306
D
N2
DG
6
1_555
D
DC
309
D
O2
DC
8
1_555
hydrog
WATSON-CRICK
D
DG
306
D
O6
DG
6
1_555
D
DC
309
D
N4
DC
8
1_555
DNA
DNA HAIRPIN, DNA
1CS7
PDB
1
1CS7
1
14
1CS7
1
14
1CS7
A
1
1
13
101
114
1CS7
101
114
1CS7
B
1
1
13
201
214
1CS7
201
214
1CS7
C
1
1
13
301
314
1CS7
301
314
1CS7
D
1
1
13
4
monoclinic
P 1 21 1