0.013423 0.000000 0.006751 0.000000 0.041152 0.000000 0.000000 0.000000 0.024281 0.00000 0.00000 0.00000 Ippolito, J.A. Steitz, T.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90 116.7 90 74.5 24.3 46.1 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N H N 113 N H N 114 N O N 115 N P N 116 N O N 117 N O N 118 N O N 119 N C N 120 R C N 121 N O N 122 S C N 123 N O N 124 R C N 125 N O N 126 R C N 127 N N N 128 N C N 129 N O N 130 N N N 131 N C N 132 N O N 133 N C N 134 N C N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N doub N 151 N sing N 152 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 295 711 717 10.1006/jmbi.1999.3405 10656783 The structure of the HIV-1 RRE high affinity rev binding site at 1.6 A resolution. 2000 10.2210/pdb1csl/pdb pdb_00001csl CHIRALITY OF C2' U 78 B IS INCORRECT 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 1998-05-09 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 0.918 1.0 F1 CHESS 0.918 SYNCHROTRON CHESS BEAMLINE F1 4242.646 5'-R(*AP*AP*CP*GP*GP*GP*CP*GP*CP*AP*GP*AP*A)-3' HIGH AFFINITY REV BINDING SITE 1 syn polymer 4746.817 5'-R(*UP*CP*UP*GP*AP*CP*GP*GP*UP*AP*CP*GP*UP*UP*U)-3' 1 syn polymer 18.015 water 144 nat water no no AACGGGCGCAGAA AACGGGCGCAGAA A polyribonucleotide no no UCUGACGGUACGUUU UCUGACGGUACGUUU B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.07 40.68 VAPOR DIFFUSION, HANGING DROP 6.0 LITHIUM SULFATE, MAGNESIUM SULFATE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 LI2SO4 1 MGSO4 1 SODIUM CACODYLATE 1 15.233 A 43 B 77 -25.887 A_A43:U77_B 1 -7.725 -5.436 0.139 -1.122 13.828 1 20 A 44 B 76 -4.184 A_A44:U76_B 2 -19.296 0.000 0.236 -0.028 11.101 1 19 A 45 B 75 1.687 A_C45:G75_B 3 -20.226 0.196 -0.052 -0.029 -10.279 1 19 A 46 B 74 1.941 A_G46:C74_B 4 -18.404 -0.147 -0.079 -0.064 -16.394 8 A 47 B 73 -20.733 A_G47:A73_B 5 0.009 -0.188 -0.208 1.503 -17.702 6 A 48 B 71 -85.555 A_G48:G71_B 6 -6.262 1.647 0.233 3.666 7.100 1 19 A 49 B 70 2.014 A_C49:G70_B 7 -13.820 0.285 -0.065 -0.068 1.576 1 19 A 50 B 69 1.971 A_G50:C69_B 8 -17.122 -0.284 0.073 -0.088 5.087 1 19 A 51 B 67 1.305 A_C51:G67_B 9 -16.912 0.287 0.104 -0.084 -5.007 1 20 A 52 B 66 -4.764 A_A52:U66_B 10 -15.415 0.221 0.056 -0.005 -11.010 1 19 A 53 B 65 -0.939 A_G53:C65_B 11 -21.403 -0.173 0.090 -0.075 -6.492 1 20 A 54 B 64 -1.827 A_A54:U64_B 12 -24.607 0.046 -0.129 -0.029 3.234 55.824 A A 43 44 5.822 B B 77 76 3.406 5.441 1.041 -1.143 AA_A43A44:U76U77_BB 1 -3.012 3.223 55.505 -1.540 -1.288 3.167 35.770 A A 44 45 7.436 B B 76 75 3.302 4.553 0.406 -1.036 AA_A44C45:G75U76_BB 2 2.149 -3.509 35.425 -2.339 -0.353 3.011 35.153 A A 45 46 19.467 B B 75 74 3.737 11.550 0.423 -1.696 AA_C45G46:C74G75_BB 3 1.051 -1.771 33.242 -4.639 -0.534 2.825 35.426 A A 46 47 8.310 B B 74 73 3.256 5.038 -1.160 -2.433 AA_G46G47:A73C74_BB 4 1.898 -3.130 35.027 -4.690 2.167 2.404 73.350 A A 47 48 12.726 B B 73 71 2.951 15.110 1.262 -3.226 AA_G47G48:G71A73_BB 5 5.448 -4.588 71.812 -3.104 -0.911 1.988 -19.790 A A 48 49 -32.457 B B 71 70 3.086 10.545 -0.600 1.281 AA_G48C49:G70G71_BB 6 2.724 8.384 -16.548 -7.980 -0.648 2.137 31.176 A A 49 50 28.574 B B 70 69 3.297 14.765 0.086 -1.675 AA_C49G50:C69G70_BB 7 -1.102 2.132 27.512 -5.608 -0.346 3.063 40.960 A A 50 51 4.539 B B 69 67 3.161 3.173 0.707 -1.210 AA_G50C51:G67C69_BB 8 0.013 -0.018 40.842 -2.060 -1.009 2.863 37.079 A A 51 52 15.979 B B 67 66 3.372 10.041 -0.328 -1.445 AA_C51A52:U66G67_BB 9 1.309 -2.084 35.716 -3.579 0.686 2.955 34.256 A A 52 53 16.644 B B 66 65 3.399 9.673 0.447 -1.212 AA_A52G53:C65U66_BB 10 1.987 -3.420 32.843 -3.569 -0.449 3.026 36.733 A A 53 54 12.034 B B 65 64 3.225 7.517 0.168 -0.668 AA_G53A54:U64C65_BB 11 4.373 -7.001 35.724 -2.055 0.313 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Advisory Data collection Database references 1 0 2000-02-14 1 1 2008-04-27 1 2 2011-07-13 1 3 2011-12-28 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y RCSB 1999-08-18 REL REL HOH water SEQUENCE NATURALLY OCCURS IN RRE OF HIV-1 sample HOH 85 3 HOH HOH 85 A HOH 87 3 HOH HOH 87 A HOH 90 3 HOH HOH 90 A HOH 93 3 HOH HOH 93 A HOH 95 3 HOH HOH 95 A HOH 96 3 HOH HOH 96 A HOH 97 3 HOH HOH 97 A HOH 99 3 HOH HOH 99 A HOH 102 3 HOH HOH 102 A HOH 107 3 HOH HOH 107 A HOH 108 3 HOH HOH 108 A HOH 110 3 HOH HOH 110 A HOH 113 3 HOH HOH 113 A HOH 116 3 HOH HOH 116 A HOH 118 3 HOH HOH 118 A HOH 119 3 HOH HOH 119 A HOH 121 3 HOH HOH 121 A HOH 126 3 HOH HOH 126 A HOH 131 3 HOH HOH 131 A HOH 134 3 HOH HOH 134 A HOH 141 3 HOH HOH 141 A HOH 142 3 HOH HOH 142 A HOH 144 3 HOH HOH 144 A HOH 145 3 HOH HOH 145 A HOH 146 3 HOH HOH 146 A HOH 149 3 HOH HOH 149 A HOH 150 3 HOH HOH 150 A HOH 151 3 HOH HOH 151 A HOH 154 3 HOH HOH 154 A HOH 157 3 HOH HOH 157 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 218 3 HOH HOH 218 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 229 3 HOH HOH 229 A HOH 239 3 HOH HOH 239 A HOH 249 3 HOH HOH 249 A HOH 250 3 HOH HOH 250 A HOH 254 3 HOH HOH 254 A HOH 259 3 HOH HOH 259 A HOH 260 3 HOH HOH 260 A HOH 262 3 HOH HOH 262 A HOH 263 3 HOH HOH 263 A HOH 264 3 HOH HOH 264 A HOH 267 3 HOH HOH 267 A HOH 270 3 HOH HOH 270 A HOH 271 3 HOH HOH 271 A HOH 272 3 HOH HOH 272 A HOH 274 3 HOH HOH 274 A HOH 275 3 HOH HOH 275 A HOH 79 3 HOH HOH 79 B HOH 80 3 HOH HOH 80 B HOH 81 3 HOH HOH 81 B HOH 82 3 HOH HOH 82 B HOH 83 3 HOH HOH 83 B HOH 84 3 HOH HOH 84 B HOH 86 3 HOH HOH 86 B HOH 88 3 HOH HOH 88 B HOH 89 3 HOH HOH 89 B HOH 91 3 HOH HOH 91 B HOH 92 3 HOH HOH 92 B HOH 94 3 HOH HOH 94 B HOH 98 3 HOH HOH 98 B HOH 100 3 HOH HOH 100 B HOH 101 3 HOH HOH 101 B HOH 103 3 HOH HOH 103 B HOH 104 3 HOH HOH 104 B HOH 105 3 HOH HOH 105 B HOH 106 3 HOH HOH 106 B HOH 109 3 HOH HOH 109 B HOH 111 3 HOH HOH 111 B HOH 112 3 HOH HOH 112 B HOH 114 3 HOH HOH 114 B HOH 115 3 HOH HOH 115 B HOH 120 3 HOH HOH 120 B HOH 122 3 HOH HOH 122 B HOH 123 3 HOH HOH 123 B HOH 128 3 HOH HOH 128 B HOH 129 3 HOH HOH 129 B HOH 130 3 HOH HOH 130 B HOH 133 3 HOH HOH 133 B HOH 136 3 HOH HOH 136 B HOH 137 3 HOH HOH 137 B HOH 139 3 HOH HOH 139 B HOH 140 3 HOH HOH 140 B HOH 147 3 HOH HOH 147 B HOH 148 3 HOH HOH 148 B HOH 152 3 HOH HOH 152 B HOH 153 3 HOH HOH 153 B HOH 156 3 HOH HOH 156 B HOH 158 3 HOH HOH 158 B HOH 159 3 HOH HOH 159 B HOH 201 3 HOH HOH 201 B HOH 203 3 HOH HOH 203 B HOH 211 3 HOH HOH 211 B HOH 222 3 HOH HOH 222 B HOH 223 3 HOH HOH 223 B HOH 224 3 HOH HOH 224 B HOH 225 3 HOH HOH 225 B HOH 226 3 HOH HOH 226 B HOH 227 3 HOH HOH 227 B HOH 228 3 HOH HOH 228 B HOH 230 3 HOH HOH 230 B HOH 231 3 HOH HOH 231 B HOH 232 3 HOH HOH 232 B HOH 233 3 HOH HOH 233 B HOH 234 3 HOH HOH 234 B HOH 235 3 HOH HOH 235 B HOH 236 3 HOH HOH 236 B HOH 237 3 HOH HOH 237 B HOH 238 3 HOH HOH 238 B HOH 240 3 HOH HOH 240 B HOH 241 3 HOH HOH 241 B HOH 242 3 HOH HOH 242 B HOH 243 3 HOH HOH 243 B HOH 244 3 HOH HOH 244 B HOH 245 3 HOH HOH 245 B HOH 246 3 HOH HOH 246 B HOH 247 3 HOH HOH 247 B HOH 248 3 HOH HOH 248 B HOH 251 3 HOH HOH 251 B HOH 252 3 HOH HOH 252 B HOH 253 3 HOH HOH 253 B HOH 255 3 HOH HOH 255 B HOH 256 3 HOH HOH 256 B HOH 257 3 HOH HOH 257 B HOH 258 3 HOH HOH 258 B HOH 261 3 HOH HOH 261 B HOH 265 3 HOH HOH 265 B HOH 266 3 HOH HOH 266 B HOH 268 3 HOH HOH 268 B HOH 269 3 HOH HOH 269 B HOH 273 3 HOH HOH 273 B A 43 n 1 A 43 A A 44 n 2 A 44 A C 45 n 3 C 45 A G 46 n 4 G 46 A G 47 n 5 G 47 A G 48 n 6 G 48 A C 49 n 7 C 49 A G 50 n 8 G 50 A C 51 n 9 C 51 A A 52 n 10 A 52 A G 53 n 11 G 53 A A 54 n 12 A 54 A A 55 n 13 A 55 A U 64 n 1 U 64 B C 65 n 2 C 65 B U 66 n 3 U 66 B G 67 n 4 G 67 B A 68 n 5 A 68 B C 69 n 6 C 69 B G 70 n 7 G 70 B G 71 n 8 G 71 B U 72 n 9 U 72 B A 73 n 10 A 73 B C 74 n 11 C 74 B G 75 n 12 G 75 B U 76 n 13 U 76 B U 77 n 14 U 77 B U 78 n 15 U 78 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B C2' U 78 WRONG HAND DNA-RNA-MULTI-ENDO.PARAM DNA-RNA-MULTI-ENDO.TOP 17.8 -1.59 0.00 -0.83 0.35 0.00 1.24 0.2410000 0.008 0.2110000 0.2110000 1.60 15.0 993 9640 9640 10 96.3 RANDOM 17752510.83 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT PARKINSON ET AL., ACTA CRYST. D, 52 (1996) 57-64 FLAT MODEL 40.4733 0.411304 0.24 0.21 15.0 0.18 0.18 1.60 15.0 144 739 0 595 0 0.004 1.1 29.2 2.99 0.15 1.50 0.26 2.00 0.08 2.00 0.14 2.50 0.2720000 0.033 0.2950000 1.66 69 723 10 8.7 81.2 1.6 20.0 1CSL 9651 9651 -3.0 0.0840000 1 17.6 3.1 96.4 0.2770000 1.60 1.66 3.4 1 1.8 81.0 phasing AMoRE refinement CNS data reduction DENZO data scaling SCALEPACK CRYSTAL STRUCTURE OF THE RRE HIGH AFFINITY SITE 1 N N 2 N N 3 N N 3 N N hydrog A-U PAIR A A 43 A N6 A 1 1_555 B U 77 B O2 U 14 1_555 hydrog WATSON-CRICK A A 44 A N1 A 2 1_555 B U 76 B N3 U 13 1_555 hydrog WATSON-CRICK A A 44 A N6 A 2 1_555 B U 76 B O4 U 13 1_555 hydrog WATSON-CRICK A C 45 A N3 C 3 1_555 B G 75 B N1 G 12 1_555 hydrog WATSON-CRICK A C 45 A N4 C 3 1_555 B G 75 B O6 G 12 1_555 hydrog WATSON-CRICK A C 45 A O2 C 3 1_555 B G 75 B N2 G 12 1_555 hydrog WATSON-CRICK A G 46 A N1 G 4 1_555 B C 74 B N3 C 11 1_555 hydrog WATSON-CRICK A G 46 A N2 G 4 1_555 B C 74 B O2 C 11 1_555 hydrog WATSON-CRICK A G 46 A O6 G 4 1_555 B C 74 B N4 C 11 1_555 hydrog TYPE_8_PAIR A G 47 A N1 G 5 1_555 B A 73 B N1 A 10 1_555 hydrog TYPE_8_PAIR A G 47 A O6 G 5 1_555 B A 73 B N6 A 10 1_555 hydrog TYPE_6_PAIR A G 48 A N1 G 6 1_555 B G 71 B O6 G 8 1_555 hydrog TYPE_6_PAIR A G 48 A N2 G 6 1_555 B G 71 B N7 G 8 1_555 hydrog WATSON-CRICK A C 49 A N3 C 7 1_555 B G 70 B N1 G 7 1_555 hydrog WATSON-CRICK A C 49 A N4 C 7 1_555 B G 70 B O6 G 7 1_555 hydrog WATSON-CRICK A C 49 A O2 C 7 1_555 B G 70 B N2 G 7 1_555 hydrog WATSON-CRICK A G 50 A N1 G 8 1_555 B C 69 B N3 C 6 1_555 hydrog WATSON-CRICK A G 50 A N2 G 8 1_555 B C 69 B O2 C 6 1_555 hydrog WATSON-CRICK A G 50 A O6 G 8 1_555 B C 69 B N4 C 6 1_555 hydrog WATSON-CRICK A C 51 A N3 C 9 1_555 B G 67 B N1 G 4 1_555 hydrog WATSON-CRICK A C 51 A N4 C 9 1_555 B G 67 B O6 G 4 1_555 hydrog WATSON-CRICK A C 51 A O2 C 9 1_555 B G 67 B N2 G 4 1_555 hydrog WATSON-CRICK A A 52 A N1 A 10 1_555 B U 66 B N3 U 3 1_555 hydrog WATSON-CRICK A A 52 A N6 A 10 1_555 B U 66 B O4 U 3 1_555 hydrog WATSON-CRICK A G 53 A N1 G 11 1_555 B C 65 B N3 C 2 1_555 hydrog WATSON-CRICK A G 53 A N2 G 11 1_555 B C 65 B O2 C 2 1_555 hydrog WATSON-CRICK A G 53 A O6 G 11 1_555 B C 65 B N4 C 2 1_555 hydrog WATSON-CRICK A A 54 A N1 A 12 1_555 B U 64 B N3 U 1 1_555 hydrog WATSON-CRICK A A 54 A N6 A 12 1_555 B U 64 B O4 U 1 1_555 RNA RRE HIGH AFFINITY SITE, HIV-1, RNA 1CSL PDB 1 1CSL 1CSL PDB 2 1CSL 43 55 1CSL 43 55 1CSL A 1 1 13 64 78 1CSL 64 78 1CSL B 2 1 15 5 monoclinic C 1 2 1