0.021245 0.000000 0.002771 0.000000 0.011088 0.000000 0.000000 0.000000 0.016211 0.00000 0.00000 0.00000 PRO A 117 - PRO A 118 OMEGA = 132.67 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION Huber, C.P. Jia, Z. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 97.43 90.00 47.070 90.190 62.210 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C5 H5 N S 111.165 2-PYRIDINETHIOL non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 270 5527 5533 10.1074/jbc.270.10.5527 7890671 Crystal structures of recombinant rat cathepsin B and a cathepsin B-inhibitor complex. Implications for structure-based inhibitor design. 1995 US J.Biol.Chem. JBCHA3 0071 0021-9258 265 5950 Crystallization of Recombinant Rat Cathepsin B 1990 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 1989-09 M x-ray 1 1.0 27735.850 CATHEPSIN B 3.4.22.1 2 man polymer 111.165 2-PYRIDINETHIOL 2 syn non-polymer 18.015 water 198 nat water no no LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAW NFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEI MAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHC GIESEIVAGIPRTQ LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAW NFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEI MAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHC GIESEIVAGIPRTQ A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Norway rat Rattus baker's yeast Saccharomyces sample CDNA 10116 Rattus norvegicus 4932 Saccharomyces cerevisiae PLASMID 2.36 47.87 repository Initial release Version format compliance Version format compliance 1 0 1995-07-31 1 1 2008-03-24 1 2 2011-07-13 SHEET THERE IS A BIFURCATED SHEET IN EACH MOLECULE. EACH IS REPRESENTED BY TWO SHEETS WITH SOME STRANDS IN COMMON. THUS STRANDS 4, 5, 6 OF SHEETS SA1 AND SA2 ARE IDENTICAL TO STRANDS 2, 3, 4 OF SHEETS SA2 AND SB2 IN CHAINS A AND B, RESPECTIVELY. Y 1995-05-03 REL REL PYS 2-PYRIDINETHIOL HOH water COMPND MOLECULE: CATHEPSIN B. RECOMBINANT RAT ENZYME. RESIDUE ASN 113 (BOTH CHAINS) IS NOT GLYCOSYLATED IN THIS STRUCTURE BECAUSE THE GLYCOSYLATION CONSENSUS SEQUENCE HAS BEEN MUTATED (SER115ALA) TO AVOID HETEROGENEOUS GLYCOSYLATION. CYSTEINE 29 AND PYRIDYL (HET) GROUP FORM DISULFIDE BOND IN BOTH MOLECULES A AND B. PYS 255 2 PYS PYS 255 A PYS 255 2 PYS PYS 255 B HOH 601 3 HOH HOH 601 A HOH 602 3 HOH HOH 602 A HOH 603 3 HOH HOH 603 A HOH 604 3 HOH HOH 604 A HOH 605 3 HOH HOH 605 A HOH 606 3 HOH HOH 606 A HOH 607 3 HOH HOH 607 A HOH 608 3 HOH HOH 608 A HOH 609 3 HOH HOH 609 A HOH 610 3 HOH HOH 610 A HOH 611 3 HOH HOH 611 A HOH 612 3 HOH HOH 612 A HOH 613 3 HOH HOH 613 A HOH 614 3 HOH HOH 614 A HOH 615 3 HOH HOH 615 A HOH 617 3 HOH HOH 617 A HOH 618 3 HOH HOH 618 A HOH 619 3 HOH HOH 619 A HOH 620 3 HOH HOH 620 A HOH 621 3 HOH HOH 621 A HOH 622 3 HOH HOH 622 A HOH 623 3 HOH HOH 623 A HOH 626 3 HOH HOH 626 A HOH 627 3 HOH HOH 627 A HOH 629 3 HOH HOH 629 A HOH 630 3 HOH HOH 630 A HOH 631 3 HOH HOH 631 A HOH 632 3 HOH HOH 632 A HOH 633 3 HOH HOH 633 A HOH 637 3 HOH HOH 637 A HOH 639 3 HOH HOH 639 A HOH 640 3 HOH HOH 640 A HOH 641 3 HOH HOH 641 A HOH 642 3 HOH HOH 642 A HOH 646 3 HOH HOH 646 A HOH 647 3 HOH HOH 647 A HOH 648 3 HOH HOH 648 A HOH 649 3 HOH HOH 649 A HOH 650 3 HOH HOH 650 A HOH 651 3 HOH HOH 651 A HOH 652 3 HOH HOH 652 A HOH 654 3 HOH HOH 654 A HOH 673 3 HOH HOH 673 A HOH 679 3 HOH HOH 679 A HOH 682 3 HOH HOH 682 A HOH 688 3 HOH HOH 688 A HOH 692 3 HOH HOH 692 A HOH 693 3 HOH HOH 693 A HOH 694 3 HOH HOH 694 A HOH 695 3 HOH HOH 695 A HOH 698 3 HOH HOH 698 A HOH 699 3 HOH HOH 699 A HOH 700 3 HOH HOH 700 A HOH 701 3 HOH HOH 701 A HOH 702 3 HOH HOH 702 A HOH 703 3 HOH HOH 703 A HOH 704 3 HOH HOH 704 A HOH 705 3 HOH HOH 705 A HOH 706 3 HOH HOH 706 A HOH 707 3 HOH HOH 707 A HOH 708 3 HOH HOH 708 A HOH 709 3 HOH HOH 709 A HOH 710 3 HOH HOH 710 A HOH 711 3 HOH HOH 711 A HOH 712 3 HOH HOH 712 A HOH 713 3 HOH HOH 713 A HOH 714 3 HOH HOH 714 A HOH 715 3 HOH HOH 715 A HOH 717 3 HOH HOH 717 A HOH 718 3 HOH HOH 718 A HOH 720 3 HOH HOH 720 A HOH 722 3 HOH HOH 722 A HOH 739 3 HOH HOH 739 A HOH 743 3 HOH HOH 743 A HOH 744 3 HOH HOH 744 A HOH 745 3 HOH HOH 745 A HOH 746 3 HOH HOH 746 A HOH 747 3 HOH HOH 747 A HOH 748 3 HOH HOH 748 A HOH 749 3 HOH HOH 749 A HOH 750 3 HOH HOH 750 A HOH 751 3 HOH HOH 751 A HOH 753 3 HOH HOH 753 A HOH 754 3 HOH HOH 754 A HOH 755 3 HOH HOH 755 A HOH 756 3 HOH HOH 756 A HOH 758 3 HOH HOH 758 A HOH 764 3 HOH HOH 764 A HOH 766 3 HOH HOH 766 A HOH 768 3 HOH HOH 768 A HOH 774 3 HOH HOH 774 A HOH 775 3 HOH HOH 775 A HOH 777 3 HOH HOH 777 A HOH 782 3 HOH HOH 782 A HOH 785 3 HOH HOH 785 A HOH 786 3 HOH HOH 786 A HOH 787 3 HOH HOH 787 A HOH 789 3 HOH HOH 789 A HOH 791 3 HOH HOH 791 A HOH 793 3 HOH HOH 793 A HOH 794 3 HOH HOH 794 A HOH 796 3 HOH HOH 796 A HOH 797 3 HOH HOH 797 A HOH 798 3 HOH HOH 798 A HOH 800 3 HOH HOH 800 A HOH 616 3 HOH HOH 616 B HOH 624 3 HOH HOH 624 B HOH 625 3 HOH HOH 625 B HOH 628 3 HOH HOH 628 B HOH 634 3 HOH HOH 634 B HOH 635 3 HOH HOH 635 B HOH 636 3 HOH HOH 636 B HOH 638 3 HOH HOH 638 B HOH 644 3 HOH HOH 644 B HOH 645 3 HOH HOH 645 B HOH 653 3 HOH HOH 653 B HOH 655 3 HOH HOH 655 B HOH 656 3 HOH HOH 656 B HOH 657 3 HOH HOH 657 B HOH 658 3 HOH HOH 658 B HOH 659 3 HOH HOH 659 B HOH 660 3 HOH HOH 660 B HOH 661 3 HOH HOH 661 B HOH 662 3 HOH HOH 662 B HOH 663 3 HOH HOH 663 B HOH 664 3 HOH HOH 664 B HOH 665 3 HOH HOH 665 B HOH 666 3 HOH HOH 666 B HOH 667 3 HOH HOH 667 B HOH 668 3 HOH HOH 668 B HOH 669 3 HOH HOH 669 B HOH 670 3 HOH HOH 670 B HOH 671 3 HOH HOH 671 B HOH 672 3 HOH HOH 672 B HOH 674 3 HOH HOH 674 B HOH 675 3 HOH HOH 675 B HOH 676 3 HOH HOH 676 B HOH 677 3 HOH HOH 677 B HOH 678 3 HOH HOH 678 B HOH 680 3 HOH HOH 680 B HOH 681 3 HOH HOH 681 B HOH 683 3 HOH HOH 683 B HOH 684 3 HOH HOH 684 B HOH 685 3 HOH HOH 685 B HOH 686 3 HOH HOH 686 B HOH 687 3 HOH HOH 687 B HOH 689 3 HOH HOH 689 B HOH 690 3 HOH HOH 690 B HOH 691 3 HOH HOH 691 B HOH 696 3 HOH HOH 696 B HOH 697 3 HOH HOH 697 B HOH 716 3 HOH HOH 716 B HOH 719 3 HOH HOH 719 B HOH 721 3 HOH HOH 721 B HOH 723 3 HOH HOH 723 B HOH 724 3 HOH HOH 724 B HOH 725 3 HOH HOH 725 B HOH 726 3 HOH HOH 726 B HOH 727 3 HOH HOH 727 B HOH 728 3 HOH HOH 728 B HOH 729 3 HOH HOH 729 B HOH 730 3 HOH HOH 730 B HOH 731 3 HOH HOH 731 B HOH 732 3 HOH HOH 732 B HOH 733 3 HOH HOH 733 B HOH 734 3 HOH HOH 734 B HOH 735 3 HOH HOH 735 B HOH 736 3 HOH HOH 736 B HOH 737 3 HOH HOH 737 B HOH 738 3 HOH HOH 738 B HOH 740 3 HOH HOH 740 B HOH 741 3 HOH HOH 741 B HOH 742 3 HOH HOH 742 B HOH 752 3 HOH HOH 752 B HOH 757 3 HOH HOH 757 B HOH 759 3 HOH HOH 759 B HOH 760 3 HOH HOH 760 B HOH 761 3 HOH HOH 761 B HOH 762 3 HOH HOH 762 B HOH 763 3 HOH HOH 763 B HOH 765 3 HOH HOH 765 B HOH 767 3 HOH HOH 767 B HOH 769 3 HOH HOH 769 B HOH 770 3 HOH HOH 770 B HOH 771 3 HOH HOH 771 B HOH 772 3 HOH HOH 772 B HOH 776 3 HOH HOH 776 B HOH 778 3 HOH HOH 778 B HOH 779 3 HOH HOH 779 B HOH 780 3 HOH HOH 780 B HOH 781 3 HOH HOH 781 B HOH 783 3 HOH HOH 783 B HOH 784 3 HOH HOH 784 B HOH 788 3 HOH HOH 788 B HOH 790 3 HOH HOH 790 B HOH 792 3 HOH HOH 792 B HOH 795 3 HOH HOH 795 B HOH 799 3 HOH HOH 799 B LEU 1 n 1 LEU 1 A PRO 2 n 2 PRO 2 A GLU 3 n 3 GLU 3 A SER 4 n 4 SER 4 A PHE 5 n 5 PHE 5 A ASP 6 n 6 ASP 6 A ALA 7 n 7 ALA 7 A ARG 8 n 8 ARG 8 A GLU 9 n 9 GLU 9 A GLN 10 n 10 GLN 10 A TRP 11 n 11 TRP 11 A SER 12 n 12 SER 12 A ASN 13 n 13 ASN 13 A CYS 14 n 14 CYS 14 A PRO 15 n 15 PRO 15 A THR 16 n 16 THR 16 A ILE 17 n 17 ILE 17 A ALA 18 n 18 ALA 18 A GLN 19 n 19 GLN 19 A ILE 20 n 20 ILE 20 A ARG 21 n 21 ARG 21 A ASP 22 n 22 ASP 22 A GLN 23 n 23 GLN 23 A GLY 24 n 24 GLY 24 A SER 25 n 25 SER 25 A CYS 26 n 26 CYS 26 A GLY 27 n 27 GLY 27 A SER 28 n 28 SER 28 A CYS 29 n 29 CYS 29 A TRP 30 n 30 TRP 30 A ALA 31 n 31 ALA 31 A PHE 32 n 32 PHE 32 A GLY 33 n 33 GLY 33 A ALA 34 n 34 ALA 34 A VAL 35 n 35 VAL 35 A GLU 36 n 36 GLU 36 A ALA 37 n 37 ALA 37 A MET 38 n 38 MET 38 A SER 39 n 39 SER 39 A ASP 40 n 40 ASP 40 A ARG 41 n 41 ARG 41 A ILE 42 n 42 ILE 42 A CYS 43 n 43 CYS 43 A ILE 44 n 44 ILE 44 A HIS 45 n 45 HIS 45 A THR 46 n 46 THR 46 A ASN 47 n 47 ASN 47 A GLY 48 n 48 GLY 48 A ARG 49 n 49 ARG 49 A VAL 50 n 50 VAL 50 A ASN 51 n 51 ASN 51 A VAL 52 n 52 VAL 52 A GLU 53 n 53 GLU 53 A VAL 54 n 54 VAL 54 A SER 55 n 55 SER 55 A ALA 56 n 56 ALA 56 A GLU 57 n 57 GLU 57 A ASP 58 n 58 ASP 58 A LEU 59 n 59 LEU 59 A LEU 60 n 60 LEU 60 A THR 61 n 61 THR 61 A CYS 62 n 62 CYS 62 A CYS 63 n 63 CYS 63 A GLY 64 n 64 GLY 64 A ILE 65 n 65 ILE 65 A GLN 66 n 66 GLN 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A ASP 69 n 69 ASP 69 A GLY 70 n 70 GLY 70 A CYS 71 n 71 CYS 71 A ASN 72 n 72 ASN 72 A GLY 73 n 73 GLY 73 A GLY 74 n 74 GLY 74 A TYR 75 n 75 TYR 75 A PRO 76 n 76 PRO 76 A SER 77 n 77 SER 77 A GLY 78 n 78 GLY 78 A ALA 79 n 79 ALA 79 A TRP 80 n 80 TRP 80 A ASN 81 n 81 ASN 81 A PHE 82 n 82 PHE 82 A TRP 83 n 83 TRP 83 A THR 84 n 84 THR 84 A ARG 85 n 85 ARG 85 A LYS 86 n 86 LYS 86 A GLY 87 n 87 GLY 87 A LEU 88 n 88 LEU 88 A VAL 89 n 89 VAL 89 A SER 90 n 90 SER 90 A GLY 91 n 91 GLY 91 A GLY 92 n 92 GLY 92 A VAL 93 n 93 VAL 93 A TYR 94 n 94 TYR 94 A ASN 95 n 95 ASN 95 A SER 96 n 96 SER 96 A HIS 97 n 97 HIS 97 A ILE 98 n 98 ILE 98 A GLY 99 n 99 GLY 99 A CYS 100 n 100 CYS 100 A LEU 101 n 101 LEU 101 A PRO 102 n 102 PRO 102 A TYR 103 n 103 TYR 103 A THR 104 n 104 THR 104 A ILE 105 n 105 ILE 105 A PRO 106 n 106 PRO 106 A PRO 107 n 107 PRO 107 A CYS 108 n 108 CYS 108 A GLU 109 n 109 GLU 109 A HIS 110 n 110 HIS 110 A HIS 111 n 111 HIS 111 A VAL 112 n 112 VAL 112 A ASN 113 n 113 ASN 113 A GLY 114 n 114 GLY 114 A ALA 115 n 115 ALA 115 A ARG 116 n 116 ARG 116 A PRO 117 n 117 PRO 117 A PRO 118 n 118 PRO 118 A CYS 119 n 119 CYS 119 A THR 120 n 120 THR 120 A GLY 121 n 121 GLY 121 A GLU 122 n 122 GLU 122 A GLY 123 n 123 GLY 123 A ASP 124 n 124 ASP 124 A THR 125 n 125 THR 125 A PRO 126 n 126 PRO 126 A LYS 127 n 127 LYS 127 A CYS 128 n 128 CYS 128 A ASN 129 n 129 ASN 129 A LYS 130 n 130 LYS 130 A MET 131 n 131 MET 131 A CYS 132 n 132 CYS 132 A GLU 133 n 133 GLU 133 A ALA 134 n 134 ALA 134 A GLY 135 n 135 GLY 135 A TYR 136 n 136 TYR 136 A SER 137 n 137 SER 137 A THR 138 n 138 THR 138 A SER 139 n 139 SER 139 A TYR 140 n 140 TYR 140 A LYS 141 n 141 LYS 141 A GLU 142 n 142 GLU 142 A ASP 143 n 143 ASP 143 A LYS 144 n 144 LYS 144 A HIS 145 n 145 HIS 145 A TYR 146 n 146 TYR 146 A GLY 147 n 147 GLY 147 A TYR 148 n 148 TYR 148 A THR 149 n 149 THR 149 A SER 150 n 150 SER 150 A TYR 151 n 151 TYR 151 A SER 152 n 152 SER 152 A VAL 153 n 153 VAL 153 A SER 154 n 154 SER 154 A ASP 155 n 155 ASP 155 A SER 156 n 156 SER 156 A GLU 157 n 157 GLU 157 A LYS 158 n 158 LYS 158 A GLU 159 n 159 GLU 159 A ILE 160 n 160 ILE 160 A MET 161 n 161 MET 161 A ALA 162 n 162 ALA 162 A GLU 163 n 163 GLU 163 A ILE 164 n 164 ILE 164 A TYR 165 n 165 TYR 165 A LYS 166 n 166 LYS 166 A ASN 167 n 167 ASN 167 A GLY 168 n 168 GLY 168 A PRO 169 n 169 PRO 169 A VAL 170 n 170 VAL 170 A GLU 171 n 171 GLU 171 A GLY 172 n 172 GLY 172 A ALA 173 n 173 ALA 173 A PHE 174 n 174 PHE 174 A THR 175 n 175 THR 175 A VAL 176 n 176 VAL 176 A PHE 177 n 177 PHE 177 A SER 178 n 178 SER 178 A ASP 179 n 179 ASP 179 A PHE 180 n 180 PHE 180 A LEU 181 n 181 LEU 181 A THR 182 n 182 THR 182 A TYR 183 n 183 TYR 183 A LYS 184 n 184 LYS 184 A SER 185 n 185 SER 185 A GLY 186 n 186 GLY 186 A VAL 187 n 187 VAL 187 A TYR 188 n 188 TYR 188 A LYS 189 n 189 LYS 189 A HIS 190 n 190 HIS 190 A GLU 191 n 191 GLU 191 A ALA 192 n 192 ALA 192 A GLY 193 n 193 GLY 193 A ASP 194 n 194 ASP 194 A VAL 195 n 195 VAL 195 A MET 196 n 196 MET 196 A GLY 197 n 197 GLY 197 A GLY 198 n 198 GLY 198 A HIS 199 n 199 HIS 199 A ALA 200 n 200 ALA 200 A ILE 201 n 201 ILE 201 A ARG 202 n 202 ARG 202 A ILE 203 n 203 ILE 203 A LEU 204 n 204 LEU 204 A GLY 205 n 205 GLY 205 A TRP 206 n 206 TRP 206 A GLY 207 n 207 GLY 207 A ILE 208 n 208 ILE 208 A GLU 209 n 209 GLU 209 A ASN 210 n 210 ASN 210 A GLY 211 n 211 GLY 211 A VAL 212 n 212 VAL 212 A PRO 213 n 213 PRO 213 A TYR 214 n 214 TYR 214 A TRP 215 n 215 TRP 215 A LEU 216 n 216 LEU 216 A VAL 217 n 217 VAL 217 A ALA 218 n 218 ALA 218 A ASN 219 n 219 ASN 219 A SER 220 n 220 SER 220 A TRP 221 n 221 TRP 221 A ASN 222 n 222 ASN 222 A ALA 223 n 223 ALA 223 A ASP 224 n 224 ASP 224 A TRP 225 n 225 TRP 225 A GLY 226 n 226 GLY 226 A ASP 227 n 227 ASP 227 A ASN 228 n 228 ASN 228 A GLY 229 n 229 GLY 229 A PHE 230 n 230 PHE 230 A PHE 231 n 231 PHE 231 A LYS 232 n 232 LYS 232 A ILE 233 n 233 ILE 233 A LEU 234 n 234 LEU 234 A ARG 235 n 235 ARG 235 A GLY 236 n 236 GLY 236 A GLU 237 n 237 GLU 237 A ASN 238 n 238 ASN 238 A HIS 239 n 239 HIS 239 A CYS 240 n 240 CYS 240 A GLY 241 n 241 GLY 241 A ILE 242 n 242 ILE 242 A GLU 243 n 243 GLU 243 A SER 244 n 244 SER 244 A GLU 245 n 245 GLU 245 A ILE 246 n 246 ILE 246 A VAL 247 n 247 VAL 247 A ALA 248 n 248 ALA 248 A GLY 249 n 249 GLY 249 A ILE 250 n 250 ILE 250 A PRO 251 n 251 PRO 251 A ARG 252 n 252 ARG 252 A THR 253 n 253 THR 253 A n 254 254 A LEU 1 n 1 LEU 1 B PRO 2 n 2 PRO 2 B GLU 3 n 3 GLU 3 B SER 4 n 4 SER 4 B PHE 5 n 5 PHE 5 B ASP 6 n 6 ASP 6 B ALA 7 n 7 ALA 7 B ARG 8 n 8 ARG 8 B GLU 9 n 9 GLU 9 B GLN 10 n 10 GLN 10 B TRP 11 n 11 TRP 11 B SER 12 n 12 SER 12 B ASN 13 n 13 ASN 13 B CYS 14 n 14 CYS 14 B PRO 15 n 15 PRO 15 B THR 16 n 16 THR 16 B ILE 17 n 17 ILE 17 B ALA 18 n 18 ALA 18 B GLN 19 n 19 GLN 19 B ILE 20 n 20 ILE 20 B ARG 21 n 21 ARG 21 B ASP 22 n 22 ASP 22 B GLN 23 n 23 GLN 23 B GLY 24 n 24 GLY 24 B SER 25 n 25 SER 25 B CYS 26 n 26 CYS 26 B GLY 27 n 27 GLY 27 B SER 28 n 28 SER 28 B CYS 29 n 29 CYS 29 B TRP 30 n 30 TRP 30 B ALA 31 n 31 ALA 31 B PHE 32 n 32 PHE 32 B GLY 33 n 33 GLY 33 B ALA 34 n 34 ALA 34 B VAL 35 n 35 VAL 35 B GLU 36 n 36 GLU 36 B ALA 37 n 37 ALA 37 B MET 38 n 38 MET 38 B SER 39 n 39 SER 39 B ASP 40 n 40 ASP 40 B ARG 41 n 41 ARG 41 B ILE 42 n 42 ILE 42 B CYS 43 n 43 CYS 43 B ILE 44 n 44 ILE 44 B HIS 45 n 45 HIS 45 B THR 46 n 46 THR 46 B ASN 47 n 47 ASN 47 B GLY 48 n 48 GLY 48 B ARG 49 n 49 ARG 49 B VAL 50 n 50 VAL 50 B ASN 51 n 51 ASN 51 B VAL 52 n 52 VAL 52 B GLU 53 n 53 GLU 53 B VAL 54 n 54 VAL 54 B SER 55 n 55 SER 55 B ALA 56 n 56 ALA 56 B GLU 57 n 57 GLU 57 B ASP 58 n 58 ASP 58 B LEU 59 n 59 LEU 59 B LEU 60 n 60 LEU 60 B THR 61 n 61 THR 61 B CYS 62 n 62 CYS 62 B CYS 63 n 63 CYS 63 B GLY 64 n 64 GLY 64 B ILE 65 n 65 ILE 65 B GLN 66 n 66 GLN 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B ASP 69 n 69 ASP 69 B GLY 70 n 70 GLY 70 B CYS 71 n 71 CYS 71 B ASN 72 n 72 ASN 72 B GLY 73 n 73 GLY 73 B GLY 74 n 74 GLY 74 B TYR 75 n 75 TYR 75 B PRO 76 n 76 PRO 76 B SER 77 n 77 SER 77 B GLY 78 n 78 GLY 78 B ALA 79 n 79 ALA 79 B TRP 80 n 80 TRP 80 B ASN 81 n 81 ASN 81 B PHE 82 n 82 PHE 82 B TRP 83 n 83 TRP 83 B THR 84 n 84 THR 84 B ARG 85 n 85 ARG 85 B LYS 86 n 86 LYS 86 B GLY 87 n 87 GLY 87 B LEU 88 n 88 LEU 88 B VAL 89 n 89 VAL 89 B SER 90 n 90 SER 90 B GLY 91 n 91 GLY 91 B GLY 92 n 92 GLY 92 B VAL 93 n 93 VAL 93 B TYR 94 n 94 TYR 94 B ASN 95 n 95 ASN 95 B SER 96 n 96 SER 96 B HIS 97 n 97 HIS 97 B ILE 98 n 98 ILE 98 B GLY 99 n 99 GLY 99 B CYS 100 n 100 CYS 100 B LEU 101 n 101 LEU 101 B PRO 102 n 102 PRO 102 B TYR 103 n 103 TYR 103 B THR 104 n 104 THR 104 B ILE 105 n 105 ILE 105 B PRO 106 n 106 PRO 106 B PRO 107 n 107 PRO 107 B CYS 108 n 108 CYS 108 B GLU 109 n 109 GLU 109 B HIS 110 n 110 HIS 110 B HIS 111 n 111 HIS 111 B VAL 112 n 112 VAL 112 B ASN 113 n 113 ASN 113 B GLY 114 n 114 GLY 114 B ALA 115 n 115 ALA 115 B ARG 116 n 116 ARG 116 B PRO 117 n 117 PRO 117 B PRO 118 n 118 PRO 118 B CYS 119 n 119 CYS 119 B THR 120 n 120 THR 120 B GLY 121 n 121 GLY 121 B GLU 122 n 122 GLU 122 B GLY 123 n 123 GLY 123 B ASP 124 n 124 ASP 124 B THR 125 n 125 THR 125 B PRO 126 n 126 PRO 126 B LYS 127 n 127 LYS 127 B CYS 128 n 128 CYS 128 B ASN 129 n 129 ASN 129 B LYS 130 n 130 LYS 130 B MET 131 n 131 MET 131 B CYS 132 n 132 CYS 132 B GLU 133 n 133 GLU 133 B ALA 134 n 134 ALA 134 B GLY 135 n 135 GLY 135 B TYR 136 n 136 TYR 136 B SER 137 n 137 SER 137 B THR 138 n 138 THR 138 B SER 139 n 139 SER 139 B TYR 140 n 140 TYR 140 B LYS 141 n 141 LYS 141 B GLU 142 n 142 GLU 142 B ASP 143 n 143 ASP 143 B LYS 144 n 144 LYS 144 B HIS 145 n 145 HIS 145 B TYR 146 n 146 TYR 146 B GLY 147 n 147 GLY 147 B TYR 148 n 148 TYR 148 B THR 149 n 149 THR 149 B SER 150 n 150 SER 150 B TYR 151 n 151 TYR 151 B SER 152 n 152 SER 152 B VAL 153 n 153 VAL 153 B SER 154 n 154 SER 154 B ASP 155 n 155 ASP 155 B SER 156 n 156 SER 156 B GLU 157 n 157 GLU 157 B LYS 158 n 158 LYS 158 B GLU 159 n 159 GLU 159 B ILE 160 n 160 ILE 160 B MET 161 n 161 MET 161 B ALA 162 n 162 ALA 162 B GLU 163 n 163 GLU 163 B ILE 164 n 164 ILE 164 B TYR 165 n 165 TYR 165 B LYS 166 n 166 LYS 166 B ASN 167 n 167 ASN 167 B GLY 168 n 168 GLY 168 B PRO 169 n 169 PRO 169 B VAL 170 n 170 VAL 170 B GLU 171 n 171 GLU 171 B GLY 172 n 172 GLY 172 B ALA 173 n 173 ALA 173 B PHE 174 n 174 PHE 174 B THR 175 n 175 THR 175 B VAL 176 n 176 VAL 176 B PHE 177 n 177 PHE 177 B SER 178 n 178 SER 178 B ASP 179 n 179 ASP 179 B PHE 180 n 180 PHE 180 B LEU 181 n 181 LEU 181 B THR 182 n 182 THR 182 B TYR 183 n 183 TYR 183 B LYS 184 n 184 LYS 184 B SER 185 n 185 SER 185 B GLY 186 n 186 GLY 186 B VAL 187 n 187 VAL 187 B TYR 188 n 188 TYR 188 B LYS 189 n 189 LYS 189 B HIS 190 n 190 HIS 190 B GLU 191 n 191 GLU 191 B ALA 192 n 192 ALA 192 B GLY 193 n 193 GLY 193 B ASP 194 n 194 ASP 194 B VAL 195 n 195 VAL 195 B MET 196 n 196 MET 196 B GLY 197 n 197 GLY 197 B GLY 198 n 198 GLY 198 B HIS 199 n 199 HIS 199 B ALA 200 n 200 ALA 200 B ILE 201 n 201 ILE 201 B ARG 202 n 202 ARG 202 B ILE 203 n 203 ILE 203 B LEU 204 n 204 LEU 204 B GLY 205 n 205 GLY 205 B TRP 206 n 206 TRP 206 B GLY 207 n 207 GLY 207 B ILE 208 n 208 ILE 208 B GLU 209 n 209 GLU 209 B ASN 210 n 210 ASN 210 B GLY 211 n 211 GLY 211 B VAL 212 n 212 VAL 212 B PRO 213 n 213 PRO 213 B TYR 214 n 214 TYR 214 B TRP 215 n 215 TRP 215 B LEU 216 n 216 LEU 216 B VAL 217 n 217 VAL 217 B ALA 218 n 218 ALA 218 B ASN 219 n 219 ASN 219 B SER 220 n 220 SER 220 B TRP 221 n 221 TRP 221 B ASN 222 n 222 ASN 222 B ALA 223 n 223 ALA 223 B ASP 224 n 224 ASP 224 B TRP 225 n 225 TRP 225 B GLY 226 n 226 GLY 226 B ASP 227 n 227 ASP 227 B ASN 228 n 228 ASN 228 B GLY 229 n 229 GLY 229 B PHE 230 n 230 PHE 230 B PHE 231 n 231 PHE 231 B LYS 232 n 232 LYS 232 B ILE 233 n 233 ILE 233 B LEU 234 n 234 LEU 234 B ARG 235 n 235 ARG 235 B GLY 236 n 236 GLY 236 B GLU 237 n 237 GLU 237 B ASN 238 n 238 ASN 238 B HIS 239 n 239 HIS 239 B CYS 240 n 240 CYS 240 B GLY 241 n 241 GLY 241 B ILE 242 n 242 ILE 242 B GLU 243 n 243 GLU 243 B SER 244 n 244 SER 244 B GLU 245 n 245 GLU 245 B ILE 246 n 246 ILE 246 B VAL 247 n 247 VAL 247 B ALA 248 n 248 ALA 248 B GLY 249 n 249 GLY 249 B ILE 250 n 250 ILE 250 B PRO 251 n 251 PRO 251 B ARG 252 n 252 ARG 252 B THR 253 n 253 THR 253 B n 254 254 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CB GLU 122 A CB GLU 122 1 Y 1 A CG GLU 122 A CG GLU 122 1 Y 1 A CD GLU 122 A CD GLU 122 1 Y 1 A OE1 GLU 122 A OE1 GLU 122 1 Y 1 A OE2 GLU 122 A OE2 GLU 122 1 Y 1 A CG LYS 127 A CG LYS 127 0 Y 1 A CD LYS 127 A CD LYS 127 0 Y 1 A CE LYS 127 A CE LYS 127 0 Y 1 A NZ LYS 127 A NZ LYS 127 0 Y 1 A CG GLU 142 A CG GLU 142 0 Y 1 A CD GLU 142 A CD GLU 142 0 Y 1 A OE1 GLU 142 A OE1 GLU 142 0 Y 1 A OE2 GLU 142 A OE2 GLU 142 0 Y 1 A CG LYS 158 A CG LYS 158 1 Y 1 A CD LYS 158 A CD LYS 158 1 Y 1 A CE LYS 158 A CE LYS 158 1 Y 1 A NZ LYS 158 A NZ LYS 158 1 Y 1 B CB GLU 122 B CB GLU 122 1 Y 1 B CG GLU 122 B CG GLU 122 1 Y 1 B CD GLU 122 B CD GLU 122 1 Y 1 B OE1 GLU 122 B OE1 GLU 122 1 Y 1 B OE2 GLU 122 B OE2 GLU 122 1 Y 1 B CG LYS 127 B CG LYS 127 0 Y 1 B CD LYS 127 B CD LYS 127 0 Y 1 B CE LYS 127 B CE LYS 127 0 Y 1 B NZ LYS 127 B NZ LYS 127 0 Y 1 B CG LYS 158 B CG LYS 158 0 Y 1 B CD LYS 158 B CD LYS 158 0 Y 1 B CE LYS 158 B CE LYS 158 0 Y 1 B NZ LYS 158 B NZ LYS 158 0 Y 1 B CG LYS 184 B CG LYS 184 0 Y 1 B CD LYS 184 B CD LYS 184 0 Y 1 B CE LYS 184 B CE LYS 184 0 Y 1 B NZ LYS 184 B NZ LYS 184 0 Y 1 B CG ASP 194 B CG ASP 194 0 Y 1 B OD1 ASP 194 B OD1 ASP 194 0 Y 1 B OD2 ASP 194 B OD2 ASP 194 0 Y 1 A GLN 254 A GLN 254 1 Y 1 B GLN 254 B GLN 254 1 Y 1 A GLU 237 -10.77 1 A SER 244 10.28 1 B ILE 42 -10.21 1 B PHE 231 10.11 1 B GLU 243 -10.98 1 A PHE 32 0.074 SIDE CHAIN 1 A ARG 41 0.098 SIDE CHAIN 1 A ARG 49 0.090 SIDE CHAIN 1 A TYR 75 0.067 SIDE CHAIN 1 A ARG 85 0.137 SIDE CHAIN 1 A TYR 136 0.138 SIDE CHAIN 1 A TYR 148 0.067 SIDE CHAIN 1 B ARG 21 0.100 SIDE CHAIN 1 B ARG 41 0.131 SIDE CHAIN 1 B TYR 75 0.062 SIDE CHAIN 1 B ARG 85 0.087 SIDE CHAIN 1 B HIS 199 0.106 SIDE CHAIN 1 B TYR 214 0.115 SIDE CHAIN 1 10.04 1.60 122.70 132.74 A A A O C N PRO PRO CYS 118 118 119 Y 1 6.66 1.10 114.20 120.86 A A A CA CB SG CYS CYS CYS 119 119 119 N 1 19.65 2.20 113.40 133.05 A A A CA CB CG LYS LYS LYS 127 127 127 N 1 A A CG CD GLU GLU 3 3 0.103 0.015 1.515 1.618 N 1 A A CB SG CYS CYS 119 119 0.143 0.017 1.818 1.961 N 1 A A CB CG LYS LYS 127 127 -0.352 0.027 1.521 1.169 N 1 A A CD OE1 GLU GLU 142 142 -0.170 0.011 1.252 1.082 N 1 A ASN 47 56.67 16.21 1 A ASN 95 54.07 9.49 1 A THR 120 -102.68 77.25 1 A ASP 155 -54.98 74.72 1 A PRO 169 -41.53 155.25 1 A SER 178 -35.30 -35.67 1 A SER 185 -171.70 -174.48 1 A LEU 204 -144.44 16.10 1 A ASN 222 66.15 174.47 1 A LEU 234 -39.14 127.21 1 A ASN 238 33.03 37.59 1 A CYS 240 45.17 26.59 1 A ALA 248 -170.13 -172.23 1 B ASN 95 58.80 14.04 1 B ASP 124 -43.79 150.79 1 B PRO 126 -38.14 138.31 1 B ASP 155 -62.38 80.02 1 B PRO 169 -45.01 151.11 1 B GLU 191 -130.49 -87.35 1 B ASN 222 66.79 173.06 1 B LEU 234 -37.99 131.02 25.1 RESIDUE ASN 222 OF BOTH CHAINS HAS PHI-PSI ANGLES OUTSIDE THE NORMALLY PERMITTED RANGE BECAUSE ITS SIDE CHAIN OXYGEN ATOM IS INVOLVED IN A HYDROGEN BOND WITH THE ADJACENT MAIN-CHAIN N-H 223. 0.166 0.166 2.1 8.0 24997 89.9 1 2. 0.21 2.1 8.0 198 4066 14 0 3854 0.015 1CTE 28689 0.075 1 4.2 92.6 data collection SDMS model building X-PLOR refinement X-PLOR data reduction SDMS phasing X-PLOR CATHEPSIN B, 2-PYRIDINETHIOL CRYSTAL STRUCTURES OF RECOMBINANT RAT CATHEPSIN B AND A CATHEPSIN B-INHIBITOR COMPLEX: IMPLICATIONS FOR STRUCTURE-BASED INHIBITOR DESIGN 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N MTRIX THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED SECOND. APPLIED TO TRANSFORMED TO MTRIX RESIDUES RESIDUES RMSD M1 A 1 .. 253 B 1 .. 253 0.347 A CYS 29 A CYS 29 HELX_P A HIS 45 A HIS 45 1 3 17 A ALA 56 A ALA 56 HELX_P A CYS 62 A CYS 62 1 4 7 A PRO 76 A PRO 76 HELX_P A ARG 85 A ARG 85 1 7 10 A GLU 157 A GLU 157 HELX_P A ASN 167 A ASN 167 1 9 11 A SER 178 A SER 178 HELX_P A PHE 180 A PHE 180 5 10 3 B CYS 29 B CYS 29 HELX_P B HIS 45 B HIS 45 1 14 17 B ALA 56 B ALA 56 HELX_P B CYS 62 B CYS 62 1 15 7 B PRO 76 B PRO 76 HELX_P B ARG 85 B ARG 85 1 17 10 B GLU 157 B GLU 157 HELX_P B ASN 167 B ASN 167 1 19 11 disulf 2.005 A CYS 14 A SG CYS 14 1_555 A CYS 43 A SG CYS 43 1_555 disulf 2.014 A CYS 26 A SG CYS 26 1_555 A CYS 71 A SG CYS 71 1_555 disulf 2.027 A CYS 62 A SG CYS 62 1_555 A CYS 128 A SG CYS 128 1_555 disulf 2.030 A CYS 63 A SG CYS 63 1_555 A CYS 67 A SG CYS 67 1_555 disulf 2.043 A CYS 100 A SG CYS 100 1_555 A CYS 132 A SG CYS 132 1_555 disulf 2.037 A CYS 108 A SG CYS 108 1_555 A CYS 119 A SG CYS 119 1_555 disulf 2.017 B CYS 14 B SG CYS 14 1_555 B CYS 43 B SG CYS 43 1_555 disulf 2.000 B CYS 26 B SG CYS 26 1_555 B CYS 71 B SG CYS 71 1_555 disulf 2.040 B CYS 62 B SG CYS 62 1_555 B CYS 128 B SG CYS 128 1_555 disulf 2.000 B CYS 63 B SG CYS 63 1_555 B CYS 67 B SG CYS 67 1_555 disulf 2.024 B CYS 100 B SG CYS 100 1_555 B CYS 132 B SG CYS 132 1_555 disulf 2.021 B CYS 108 B SG CYS 108 1_555 B CYS 119 B SG CYS 119 1_555 covale 2.064 A CYS 29 A SG CYS 29 1_555 A PYS 255 C S2 PYS 1_555 covale 2.040 B CYS 29 B SG CYS 29 1_555 B PYS 255 D S2 PYS 1_555 THIOL PROTEASE THIOL PROTEASE given 0.646100 0.729200 0.225400 0.729700 -0.676700 0.097400 0.223500 0.101500 -0.969400 -52.14400 89.00000 94.15200 CATB_RAT UNP 1 1 P00787 MWWSLIPLSCLLALTSAHDKPSSHPLSDDMINYINKQNTTWQAGRNFYNVDISYLKKLCGTVLGGPNLPERVGFSEDINL PESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWN FWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGSRPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIM AEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNVDWGDNGFFKILRGENHCG IESEIVAGIPRTQQYWGRF 80 333 1CTE 1 254 P00787 A 1 1 254 80 333 1CTE 1 254 P00787 B 1 1 254 1 SER CONFLICT ALA 115 1CTE A P00787 UNP 194 115 1 VAL CONFLICT ALA 223 1CTE A P00787 UNP 302 223 2 SER CONFLICT ALA 115 1CTE B P00787 UNP 194 115 2 VAL CONFLICT ALA 223 1CTE B P00787 UNP 302 223 6 4 6 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 146 A TYR 146 A VAL 153 A VAL 153 A ILE 246 A ILE 246 A ARG 252 A ARG 252 A VAL 170 A VAL 170 A SER 178 A SER 178 A ASP 194 A ASP 194 A GLU 209 A GLU 209 A VAL 212 A VAL 212 A ASN 219 A ASN 219 A GLY 229 A GLY 229 A ARG 235 A ARG 235 A PHE 5 A PHE 5 A ALA 7 A ALA 7 A ASP 194 A ASP 194 A GLU 209 A GLU 209 A VAL 212 A VAL 212 A ASN 219 A ASN 219 A GLY 229 A GLY 229 A ARG 235 A ARG 235 B TYR 146 B TYR 146 B VAL 153 B VAL 153 B ILE 246 B ILE 246 B ARG 252 B ARG 252 B VAL 170 B VAL 170 B SER 178 B SER 178 B ASP 194 B ASP 194 B GLU 209 B GLU 209 B VAL 212 B VAL 212 B ASN 219 B ASN 219 B GLY 229 B GLY 229 B ARG 235 B ARG 235 B PHE 5 B PHE 5 B ALA 7 B ALA 7 B ASP 194 B ASP 194 B GLU 209 B GLU 209 B VAL 212 B VAL 212 B ASN 219 B ASN 219 B GLY 229 B GLY 229 B ARG 235 B ARG 235 ACTIVE SITE RESIDUES FOR RAT CATHEPSIN B IN CHAIN A Author 3 ACTIVE SITE RESIDUES FOR RAT CATHEPSIN B IN CHAIN B Author 3 BINDING SITE FOR RESIDUE PYS A 255 Software 8 BINDING SITE FOR RESIDUE PYS B 255 Software 10 A CYS 29 A CYS 29 3 1_555 A HIS 199 A HIS 199 3 1_555 A ASN 219 A ASN 219 3 1_555 B CYS 29 B CYS 29 3 1_555 B HIS 199 B HIS 199 3 1_555 B ASN 219 B ASN 219 3 1_555 A GLN 23 A GLN 23 8 1_555 A CYS 29 A CYS 29 8 1_555 A PHE 180 A PHE 180 8 1_555 A HIS 199 A HIS 199 8 1_555 A ALA 200 A ALA 200 8 1_555 A ILE 201 A ILE 201 8 1_555 A ASN 219 A ASN 219 8 1_555 A TRP 221 A TRP 221 8 1_555 B GLN 23 B GLN 23 10 1_555 B CYS 29 B CYS 29 10 1_555 B PHE 174 B PHE 174 10 1_555 B VAL 176 B VAL 176 10 1_555 B HIS 199 B HIS 199 10 1_555 B ALA 200 B ALA 200 10 1_555 B ILE 201 B ILE 201 10 1_555 B ASN 219 B ASN 219 10 1_555 B TRP 221 B TRP 221 10 1_555 B HOH 757 F HOH 10 1_555 4 P 1 21 1