0.024734
-0.004250
-0.003673
0.000000
0.025097
-0.003673
0.000000
0.000000
0.025364
0.00000
0.00000
0.00000
Sheldrick, G.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
3
80.25
80.25
80.25
40.430
40.430
40.430
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
3
1159
1169
10.1016/S0969-2126(01)00252-0
8591027
Ab initio determination of the crystal structure of cytochrome c6 and comparison with plastocyanin.
1995
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
IMAGE PLATE AREA DETECTOR
1993-05
MARRESEARCH
GE(111)
M
x-ray
1
0.80
1.0
0.87
1.0
X11
EMBL/DESY, Hamburg
0.80, 0.87
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
9359.270
CYTOCHROME C6
1
nat
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
1
syn
non-polymer
18.015
water
151
nat
water
no
no
EADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIENGKGAMPAWDGRLDEDEIAGVAAYV
YDQAAGNKW
EADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIENGKGAMPAWDGRLDEDEIAGVAAYV
YDQAAGNKW
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Monoraphidium
sample
34112
Monoraphidium braunii
3
2.26
45.61
7.5
pH 7.5
repository
Initial release
Version format compliance
Version format compliance
1
0
1996-06-10
1
1
2008-03-24
1
2
2011-07-13
Y
BNL
1995-08-08
REL
REL
HEM
PROTOPORPHYRIN IX CONTAINING FE
HOH
water
HEM
91
2
HEM
HEM
91
A
HOH
101
3
HOH
HOH
101
A
HOH
102
3
HOH
HOH
102
A
HOH
103
3
HOH
HOH
103
A
HOH
104
3
HOH
HOH
104
A
HOH
105
3
HOH
HOH
105
A
HOH
106
3
HOH
HOH
106
A
HOH
107
3
HOH
HOH
107
A
HOH
108
3
HOH
HOH
108
A
HOH
109
3
HOH
HOH
109
A
HOH
110
3
HOH
HOH
110
A
HOH
111
3
HOH
HOH
111
A
HOH
112
3
HOH
HOH
112
A
HOH
113
3
HOH
HOH
113
A
HOH
114
3
HOH
HOH
114
A
HOH
115
3
HOH
HOH
115
A
HOH
116
3
HOH
HOH
116
A
HOH
117
3
HOH
HOH
117
A
HOH
118
3
HOH
HOH
118
A
HOH
119
3
HOH
HOH
119
A
HOH
120
3
HOH
HOH
120
A
HOH
121
3
HOH
HOH
121
A
HOH
122
3
HOH
HOH
122
A
HOH
123
3
HOH
HOH
123
A
HOH
124
3
HOH
HOH
124
A
HOH
125
3
HOH
HOH
125
A
HOH
126
3
HOH
HOH
126
A
HOH
127
3
HOH
HOH
127
A
HOH
128
3
HOH
HOH
128
A
HOH
129
3
HOH
HOH
129
A
HOH
130
3
HOH
HOH
130
A
HOH
131
3
HOH
HOH
131
A
HOH
132
3
HOH
HOH
132
A
HOH
133
3
HOH
HOH
133
A
HOH
134
3
HOH
HOH
134
A
HOH
135
3
HOH
HOH
135
A
HOH
136
3
HOH
HOH
136
A
HOH
137
3
HOH
HOH
137
A
HOH
138
3
HOH
HOH
138
A
HOH
139
3
HOH
HOH
139
A
HOH
140
3
HOH
HOH
140
A
HOH
141
3
HOH
HOH
141
A
HOH
142
3
HOH
HOH
142
A
HOH
143
3
HOH
HOH
143
A
HOH
144
3
HOH
HOH
144
A
HOH
145
3
HOH
HOH
145
A
HOH
146
3
HOH
HOH
146
A
HOH
147
3
HOH
HOH
147
A
HOH
148
3
HOH
HOH
148
A
HOH
149
3
HOH
HOH
149
A
HOH
150
3
HOH
HOH
150
A
HOH
151
3
HOH
HOH
151
A
HOH
152
3
HOH
HOH
152
A
HOH
153
3
HOH
HOH
153
A
HOH
154
3
HOH
HOH
154
A
HOH
155
3
HOH
HOH
155
A
HOH
156
3
HOH
HOH
156
A
HOH
157
3
HOH
HOH
157
A
HOH
158
3
HOH
HOH
158
A
HOH
159
3
HOH
HOH
159
A
HOH
160
3
HOH
HOH
160
A
HOH
161
3
HOH
HOH
161
A
HOH
162
3
HOH
HOH
162
A
HOH
163
3
HOH
HOH
163
A
HOH
164
3
HOH
HOH
164
A
HOH
165
3
HOH
HOH
165
A
HOH
166
3
HOH
HOH
166
A
HOH
167
3
HOH
HOH
167
A
HOH
168
3
HOH
HOH
168
A
HOH
169
3
HOH
HOH
169
A
HOH
170
3
HOH
HOH
170
A
HOH
171
3
HOH
HOH
171
A
HOH
172
3
HOH
HOH
172
A
HOH
173
3
HOH
HOH
173
A
HOH
174
3
HOH
HOH
174
A
HOH
175
3
HOH
HOH
175
A
HOH
176
3
HOH
HOH
176
A
HOH
177
3
HOH
HOH
177
A
HOH
178
3
HOH
HOH
178
A
HOH
179
3
HOH
HOH
179
A
HOH
180
3
HOH
HOH
180
A
HOH
181
3
HOH
HOH
181
A
HOH
182
3
HOH
HOH
182
A
HOH
183
3
HOH
HOH
183
A
HOH
184
3
HOH
HOH
184
A
HOH
185
3
HOH
HOH
185
A
HOH
186
3
HOH
HOH
186
A
HOH
187
3
HOH
HOH
187
A
HOH
188
3
HOH
HOH
188
A
HOH
189
3
HOH
HOH
189
A
HOH
190
3
HOH
HOH
190
A
HOH
191
3
HOH
HOH
191
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
207
3
HOH
HOH
207
A
HOH
208
3
HOH
HOH
208
A
HOH
209
3
HOH
HOH
209
A
HOH
210
3
HOH
HOH
210
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
213
3
HOH
HOH
213
A
HOH
214
3
HOH
HOH
214
A
HOH
215
3
HOH
HOH
215
A
HOH
216
3
HOH
HOH
216
A
HOH
217
3
HOH
HOH
217
A
HOH
218
3
HOH
HOH
218
A
HOH
219
3
HOH
HOH
219
A
HOH
220
3
HOH
HOH
220
A
HOH
221
3
HOH
HOH
221
A
HOH
222
3
HOH
HOH
222
A
HOH
223
3
HOH
HOH
223
A
HOH
224
3
HOH
HOH
224
A
HOH
225
3
HOH
HOH
225
A
HOH
226
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
228
3
HOH
HOH
228
A
HOH
229
3
HOH
HOH
229
A
HOH
230
3
HOH
HOH
230
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
235
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
238
3
HOH
HOH
238
A
HOH
239
3
HOH
HOH
239
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
243
3
HOH
HOH
243
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
252
3
HOH
HOH
252
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
HOH
255
3
HOH
HOH
255
A
HOH
256
3
HOH
HOH
256
A
HOH
257
3
HOH
HOH
257
A
HOH
258
3
HOH
HOH
258
A
HOH
259
3
HOH
HOH
259
A
HOH
301
3
HOH
HOH
301
A
GLU
1
n
1
GLU
1
A
ALA
2
n
2
ALA
2
A
ASP
3
n
3
ASP
3
A
LEU
4
n
4
LEU
4
A
ALA
5
n
5
ALA
5
A
LEU
6
n
6
LEU
6
A
GLY
7
n
7
GLY
7
A
LYS
8
n
8
LYS
8
A
ALA
9
n
9
ALA
9
A
VAL
10
n
10
VAL
10
A
PHE
11
n
11
PHE
11
A
ASP
12
n
12
ASP
12
A
GLY
13
n
13
GLY
13
A
ASN
14
n
14
ASN
14
A
CYS
15
n
15
CYS
15
A
ALA
16
n
16
ALA
16
A
ALA
17
n
17
ALA
17
A
CYS
18
n
18
CYS
18
A
HIS
19
n
19
HIS
19
A
ALA
20
n
20
ALA
20
A
GLY
21
n
21
GLY
21
A
GLY
22
n
22
GLY
22
A
GLY
23
n
23
GLY
23
A
ASN
24
n
24
ASN
24
A
ASN
25
n
25
ASN
25
A
VAL
26
n
26
VAL
26
A
ILE
27
n
27
ILE
27
A
PRO
28
n
28
PRO
28
A
ASP
29
n
29
ASP
29
A
HIS
30
n
30
HIS
30
A
THR
31
n
31
THR
31
A
LEU
32
n
32
LEU
32
A
GLN
33
n
33
GLN
33
A
LYS
34
n
34
LYS
34
A
ALA
35
n
35
ALA
35
A
ALA
36
n
36
ALA
36
A
ILE
37
n
37
ILE
37
A
GLU
38
n
38
GLU
38
A
GLN
39
n
39
GLN
39
A
PHE
40
n
40
PHE
40
A
LEU
41
n
41
LEU
41
A
ASP
42
n
42
ASP
42
A
GLY
43
n
43
GLY
43
A
GLY
44
n
44
GLY
44
A
PHE
45
n
45
PHE
45
A
ASN
46
n
46
ASN
46
A
ILE
47
n
47
ILE
47
A
GLU
48
n
48
GLU
48
A
ALA
49
n
49
ALA
49
A
ILE
50
n
50
ILE
50
A
VAL
51
n
51
VAL
51
A
TYR
52
n
52
TYR
52
A
GLN
53
n
53
GLN
53
A
ILE
54
n
54
ILE
54
A
GLU
55
n
55
GLU
55
A
ASN
56
n
56
ASN
56
A
GLY
57
n
57
GLY
57
A
LYS
58
n
58
LYS
58
A
GLY
59
n
59
GLY
59
A
ALA
60
n
60
ALA
60
A
MET
61
n
61
MET
61
A
PRO
62
n
62
PRO
62
A
ALA
63
n
63
ALA
63
A
TRP
64
n
64
TRP
64
A
ASP
65
n
65
ASP
65
A
GLY
66
n
66
GLY
66
A
ARG
67
n
67
ARG
67
A
LEU
68
n
68
LEU
68
A
ASP
69
n
69
ASP
69
A
GLU
70
n
70
GLU
70
A
ASP
71
n
71
ASP
71
A
GLU
72
n
72
GLU
72
A
ILE
73
n
73
ILE
73
A
ALA
74
n
74
ALA
74
A
GLY
75
n
75
GLY
75
A
VAL
76
n
76
VAL
76
A
ALA
77
n
77
ALA
77
A
ALA
78
n
78
ALA
78
A
TYR
79
n
79
TYR
79
A
VAL
80
n
80
VAL
80
A
TYR
81
n
81
TYR
81
A
ASP
82
n
82
ASP
82
A
GLN
83
n
83
GLN
83
A
ALA
84
n
84
ALA
84
A
ALA
85
n
85
ALA
85
A
GLY
86
n
86
GLY
86
A
ASN
87
n
87
ASN
87
A
LYS
88
n
88
LYS
88
A
TRP
89
n
89
TRP
89
A
0.1198000
0.1397000
0.1179000
0.1377000
0.1669000
0.1883000
2428
3265
9.9
10.0
24566
author_defined_assembly
1
monomeric
A
HIS
19
A
NE2
HIS
19
1_555
A
HEM
91
B
FE
HEM
1_555
A
HEM
91
B
NA
HEM
1_555
90.9
A
HIS
19
A
NE2
HIS
19
1_555
A
HEM
91
B
FE
HEM
1_555
A
HEM
91
B
NB
HEM
1_555
90.0
A
HEM
91
B
NA
HEM
1_555
A
HEM
91
B
FE
HEM
1_555
A
HEM
91
B
NB
HEM
1_555
90.8
A
HIS
19
A
NE2
HIS
19
1_555
A
HEM
91
B
FE
HEM
1_555
A
HEM
91
B
NC
HEM
1_555
87.5
A
HEM
91
B
NA
HEM
1_555
A
HEM
91
B
FE
HEM
1_555
A
HEM
91
B
NC
HEM
1_555
178.4
A
HEM
91
B
NB
HEM
1_555
A
HEM
91
B
FE
HEM
1_555
A
HEM
91
B
NC
HEM
1_555
89.5
A
HIS
19
A
NE2
HIS
19
1_555
A
HEM
91
B
FE
HEM
1_555
A
HEM
91
B
ND
HEM
1_555
91.1
A
HEM
91
B
NA
HEM
1_555
A
HEM
91
B
FE
HEM
1_555
A
HEM
91
B
ND
HEM
1_555
90.3
A
HEM
91
B
NB
HEM
1_555
A
HEM
91
B
FE
HEM
1_555
A
HEM
91
B
ND
HEM
1_555
178.4
A
HEM
91
B
NC
HEM
1_555
A
HEM
91
B
FE
HEM
1_555
A
HEM
91
B
ND
HEM
1_555
89.5
A
HIS
19
A
NE2
HIS
19
1_555
A
HEM
91
B
FE
HEM
1_555
A
MET
61
A
SD
MET
61
1_555
175.2
A
HEM
91
B
NA
HEM
1_555
A
HEM
91
B
FE
HEM
1_555
A
MET
61
A
SD
MET
61
1_555
84.9
A
HEM
91
B
NB
HEM
1_555
A
HEM
91
B
FE
HEM
1_555
A
MET
61
A
SD
MET
61
1_555
92.2
A
HEM
91
B
NC
HEM
1_555
A
HEM
91
B
FE
HEM
1_555
A
MET
61
A
SD
MET
61
1_555
96.7
A
HEM
91
B
ND
HEM
1_555
A
HEM
91
B
FE
HEM
1_555
A
MET
61
A
SD
MET
61
1_555
86.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
301
C
HOH
1
25.26
2.50
121.70
146.96
A
A
A
C
N
CA
ALA
ASP
ASP
2
3
3
B
Y
1
5.67
0.90
118.30
123.97
A
A
A
CB
CG
OD1
ASP
ASP
ASP
3
3
3
N
1
-5.89
0.90
118.30
112.41
A
A
A
CB
CG
OD2
ASP
ASP
ASP
3
3
3
N
1
-6.05
0.90
118.30
112.25
A
A
A
CB
CG
OD1
ASP
ASP
ASP
42
42
42
B
B
B
N
1
-10.52
1.70
123.20
112.68
A
A
A
O
C
N
GLY
GLY
GLY
43
43
44
Y
1
10.74
1.40
123.60
134.34
A
A
A
CD
NE
CZ
ARG
ARG
ARG
67
67
67
B
B
B
N
1
3.17
0.50
120.30
123.47
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
67
67
67
A
A
A
N
1
3.07
0.50
120.30
123.37
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
67
67
67
B
B
B
N
1
6.15
0.90
118.30
124.45
A
A
A
CB
CG
OD1
ASP
ASP
ASP
69
69
69
N
1
A
ALA
2
B
-64.68
-74.50
1
A
ASP
3
91.08
83.10
1
A
LYS
58
-163.64
119.33
ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY 0.077. CHEMICALLY EQUIVALENT BONDS AND ANGLE DISTANCES IN HEME RESTRAINED TO BE EQUAL WITHOUT TARGET VALUES. NO GEOMETRIC OR ADP RESTRAINTS APPLIED TO IRON ATOM.
0.1883000
0.1397000
0.1377000
1.10
25.0
8268
3265
32653
10326
10.0
97.9
EVERY 10TH REFLECTION
1
FREE R
0.0
AB INITIO
ENGH AND HUBER
MOEWS & KRETSINGER, J.MOL.BIOL. V. 91 (1973) 201-228.
12
642.00
822.83
1.10
25.0
151
918
43
0
724
0.013
0.033
0.014
0.016
0.148
0.130
0.010
0.005
0.043
0.108
1.10
25.0
1CTJ
32653
0.0
0.0580000
1
12.1
8.4
97.9
0.5200000
1.10
1.20
2.4
3.6
93.5
refinement
SHELXL
data reduction
DENZO
data scaling
SCALEPACK
CYTOCHROME C6, PROTOPORPHYRIN IX CONTAINING FE
CRYSTAL STRUCTURE OF CYTOCHROME C6
1
N
N
2
N
N
3
N
N
A
LEU
4
A
LEU
4
HELX_P
A
ASN
14
A
ASN
14
1
1
11
A
ALA
16
A
ALA
16
HELX_P
A
GLY
22
A
GLY
22
1
2
7
A
LYS
34
A
LYS
34
HELX_P
A
PHE
40
A
PHE
40
1
3
7
A
ILE
47
A
ILE
47
HELX_P
A
ASN
56
A
ASN
56
1
4
10
A
GLU
70
A
GLU
70
HELX_P
A
ALA
85
A
ALA
85
1
5
16
metalc
2.025
A
HEM
91
B
FE
HEM
1_555
A
HIS
19
A
NE2
HIS
19
1_555
metalc
2.359
A
HEM
91
B
FE
HEM
1_555
A
MET
61
A
SD
MET
61
1_555
covale
1.814
A
HEM
91
B
CAB
HEM
1_555
A
CYS
15
A
SG
CYS
15
1_555
covale
1.828
A
HEM
91
B
CAC
HEM
1_555
A
CYS
18
A
SG
CYS
18
1_555
ELECTRON TRANSPORT
CYTOCHROME, ELECTRON TRANSPORT, HEME
CYC6_MONBR
UNP
1
1
Q09099
EADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIENGKGAMPAWDGRLDEDEIAGVAAYV
YDQAAGNKW
1
89
1CTJ
1
89
Q09099
A
1
1
89
BINDING SITE FOR RESIDUE HEM A 91
Software
17
A
ASN
14
A
ASN
14
17
1_555
A
CYS
15
A
CYS
15
17
1_555
A
ALA
17
A
ALA
17
17
3_474
A
CYS
18
A
CYS
18
17
1_555
A
HIS
19
A
HIS
19
17
1_555
A
ASN
24
A
ASN
24
17
1_555
A
HIS
30
A
HIS
30
17
1_555
A
THR
31
A
THR
31
17
1_555
A
LEU
32
A
LEU
32
17
1_555
A
ALA
36
A
ALA
36
17
1_555
A
PHE
40
A
PHE
40
17
1_555
A
LEU
41
A
LEU
41
17
1_555
A
GLN
53
A
GLN
53
17
1_555
A
LYS
58
A
LYS
58
17
1_555
A
MET
61
A
MET
61
17
1_555
A
HOH
107
C
HOH
17
1_555
A
HOH
239
C
HOH
17
1_555
146
R 3