0.024734 -0.004250 -0.003673 0.000000 0.025097 -0.003673 0.000000 0.000000 0.025364 0.00000 0.00000 0.00000 Sheldrick, G.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 3 80.25 80.25 80.25 40.430 40.430 40.430 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H32 Fe N4 O4 616.487 PROTOPORPHYRIN IX CONTAINING FE HEME non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 3 1159 1169 10.1016/S0969-2126(01)00252-0 8591027 Ab initio determination of the crystal structure of cytochrome c6 and comparison with plastocyanin. 1995 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 IMAGE PLATE AREA DETECTOR 1993-05 MARRESEARCH GE(111) M x-ray 1 0.80 1.0 0.87 1.0 X11 EMBL/DESY, Hamburg 0.80, 0.87 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 9359.270 CYTOCHROME C6 1 nat polymer 616.487 PROTOPORPHYRIN IX CONTAINING FE 1 syn non-polymer 18.015 water 151 nat water no no EADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIENGKGAMPAWDGRLDEDEIAGVAAYV YDQAAGNKW EADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIENGKGAMPAWDGRLDEDEIAGVAAYV YDQAAGNKW A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Monoraphidium sample 34112 Monoraphidium braunii 3 2.26 45.61 7.5 pH 7.5 repository Initial release Version format compliance Version format compliance 1 0 1996-06-10 1 1 2008-03-24 1 2 2011-07-13 Y BNL 1995-08-08 REL REL HEM PROTOPORPHYRIN IX CONTAINING FE HOH water HEM 91 2 HEM HEM 91 A HOH 101 3 HOH HOH 101 A HOH 102 3 HOH HOH 102 A HOH 103 3 HOH HOH 103 A HOH 104 3 HOH HOH 104 A HOH 105 3 HOH HOH 105 A HOH 106 3 HOH HOH 106 A HOH 107 3 HOH HOH 107 A HOH 108 3 HOH HOH 108 A HOH 109 3 HOH HOH 109 A HOH 110 3 HOH HOH 110 A HOH 111 3 HOH HOH 111 A HOH 112 3 HOH HOH 112 A HOH 113 3 HOH HOH 113 A HOH 114 3 HOH HOH 114 A HOH 115 3 HOH HOH 115 A HOH 116 3 HOH HOH 116 A HOH 117 3 HOH HOH 117 A HOH 118 3 HOH HOH 118 A HOH 119 3 HOH HOH 119 A HOH 120 3 HOH HOH 120 A HOH 121 3 HOH HOH 121 A HOH 122 3 HOH HOH 122 A HOH 123 3 HOH HOH 123 A HOH 124 3 HOH HOH 124 A HOH 125 3 HOH HOH 125 A HOH 126 3 HOH HOH 126 A HOH 127 3 HOH HOH 127 A HOH 128 3 HOH HOH 128 A HOH 129 3 HOH HOH 129 A HOH 130 3 HOH HOH 130 A HOH 131 3 HOH HOH 131 A HOH 132 3 HOH HOH 132 A HOH 133 3 HOH HOH 133 A HOH 134 3 HOH HOH 134 A HOH 135 3 HOH HOH 135 A HOH 136 3 HOH HOH 136 A HOH 137 3 HOH HOH 137 A HOH 138 3 HOH HOH 138 A HOH 139 3 HOH HOH 139 A HOH 140 3 HOH HOH 140 A HOH 141 3 HOH HOH 141 A HOH 142 3 HOH HOH 142 A HOH 143 3 HOH HOH 143 A HOH 144 3 HOH HOH 144 A HOH 145 3 HOH HOH 145 A HOH 146 3 HOH HOH 146 A HOH 147 3 HOH HOH 147 A HOH 148 3 HOH HOH 148 A HOH 149 3 HOH HOH 149 A HOH 150 3 HOH HOH 150 A HOH 151 3 HOH HOH 151 A HOH 152 3 HOH HOH 152 A HOH 153 3 HOH HOH 153 A HOH 154 3 HOH HOH 154 A HOH 155 3 HOH HOH 155 A HOH 156 3 HOH HOH 156 A HOH 157 3 HOH HOH 157 A HOH 158 3 HOH HOH 158 A HOH 159 3 HOH HOH 159 A HOH 160 3 HOH HOH 160 A HOH 161 3 HOH HOH 161 A HOH 162 3 HOH HOH 162 A HOH 163 3 HOH HOH 163 A HOH 164 3 HOH HOH 164 A HOH 165 3 HOH HOH 165 A HOH 166 3 HOH HOH 166 A HOH 167 3 HOH HOH 167 A HOH 168 3 HOH HOH 168 A HOH 169 3 HOH HOH 169 A HOH 170 3 HOH HOH 170 A HOH 171 3 HOH HOH 171 A HOH 172 3 HOH HOH 172 A HOH 173 3 HOH HOH 173 A HOH 174 3 HOH HOH 174 A HOH 175 3 HOH HOH 175 A HOH 176 3 HOH HOH 176 A HOH 177 3 HOH HOH 177 A HOH 178 3 HOH HOH 178 A HOH 179 3 HOH HOH 179 A HOH 180 3 HOH HOH 180 A HOH 181 3 HOH HOH 181 A HOH 182 3 HOH HOH 182 A HOH 183 3 HOH HOH 183 A HOH 184 3 HOH HOH 184 A HOH 185 3 HOH HOH 185 A HOH 186 3 HOH HOH 186 A HOH 187 3 HOH HOH 187 A HOH 188 3 HOH HOH 188 A HOH 189 3 HOH HOH 189 A HOH 190 3 HOH HOH 190 A HOH 191 3 HOH HOH 191 A HOH 201 3 HOH HOH 201 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 217 3 HOH HOH 217 A HOH 218 3 HOH HOH 218 A HOH 219 3 HOH HOH 219 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 224 3 HOH HOH 224 A HOH 225 3 HOH HOH 225 A HOH 226 3 HOH HOH 226 A HOH 227 3 HOH HOH 227 A HOH 228 3 HOH HOH 228 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 231 3 HOH HOH 231 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 234 3 HOH HOH 234 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 237 3 HOH HOH 237 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 243 3 HOH HOH 243 A HOH 244 3 HOH HOH 244 A HOH 245 3 HOH HOH 245 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 249 3 HOH HOH 249 A HOH 250 3 HOH HOH 250 A HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A HOH 253 3 HOH HOH 253 A HOH 254 3 HOH HOH 254 A HOH 255 3 HOH HOH 255 A HOH 256 3 HOH HOH 256 A HOH 257 3 HOH HOH 257 A HOH 258 3 HOH HOH 258 A HOH 259 3 HOH HOH 259 A HOH 301 3 HOH HOH 301 A GLU 1 n 1 GLU 1 A ALA 2 n 2 ALA 2 A ASP 3 n 3 ASP 3 A LEU 4 n 4 LEU 4 A ALA 5 n 5 ALA 5 A LEU 6 n 6 LEU 6 A GLY 7 n 7 GLY 7 A LYS 8 n 8 LYS 8 A ALA 9 n 9 ALA 9 A VAL 10 n 10 VAL 10 A PHE 11 n 11 PHE 11 A ASP 12 n 12 ASP 12 A GLY 13 n 13 GLY 13 A ASN 14 n 14 ASN 14 A CYS 15 n 15 CYS 15 A ALA 16 n 16 ALA 16 A ALA 17 n 17 ALA 17 A CYS 18 n 18 CYS 18 A HIS 19 n 19 HIS 19 A ALA 20 n 20 ALA 20 A GLY 21 n 21 GLY 21 A GLY 22 n 22 GLY 22 A GLY 23 n 23 GLY 23 A ASN 24 n 24 ASN 24 A ASN 25 n 25 ASN 25 A VAL 26 n 26 VAL 26 A ILE 27 n 27 ILE 27 A PRO 28 n 28 PRO 28 A ASP 29 n 29 ASP 29 A HIS 30 n 30 HIS 30 A THR 31 n 31 THR 31 A LEU 32 n 32 LEU 32 A GLN 33 n 33 GLN 33 A LYS 34 n 34 LYS 34 A ALA 35 n 35 ALA 35 A ALA 36 n 36 ALA 36 A ILE 37 n 37 ILE 37 A GLU 38 n 38 GLU 38 A GLN 39 n 39 GLN 39 A PHE 40 n 40 PHE 40 A LEU 41 n 41 LEU 41 A ASP 42 n 42 ASP 42 A GLY 43 n 43 GLY 43 A GLY 44 n 44 GLY 44 A PHE 45 n 45 PHE 45 A ASN 46 n 46 ASN 46 A ILE 47 n 47 ILE 47 A GLU 48 n 48 GLU 48 A ALA 49 n 49 ALA 49 A ILE 50 n 50 ILE 50 A VAL 51 n 51 VAL 51 A TYR 52 n 52 TYR 52 A GLN 53 n 53 GLN 53 A ILE 54 n 54 ILE 54 A GLU 55 n 55 GLU 55 A ASN 56 n 56 ASN 56 A GLY 57 n 57 GLY 57 A LYS 58 n 58 LYS 58 A GLY 59 n 59 GLY 59 A ALA 60 n 60 ALA 60 A MET 61 n 61 MET 61 A PRO 62 n 62 PRO 62 A ALA 63 n 63 ALA 63 A TRP 64 n 64 TRP 64 A ASP 65 n 65 ASP 65 A GLY 66 n 66 GLY 66 A ARG 67 n 67 ARG 67 A LEU 68 n 68 LEU 68 A ASP 69 n 69 ASP 69 A GLU 70 n 70 GLU 70 A ASP 71 n 71 ASP 71 A GLU 72 n 72 GLU 72 A ILE 73 n 73 ILE 73 A ALA 74 n 74 ALA 74 A GLY 75 n 75 GLY 75 A VAL 76 n 76 VAL 76 A ALA 77 n 77 ALA 77 A ALA 78 n 78 ALA 78 A TYR 79 n 79 TYR 79 A VAL 80 n 80 VAL 80 A TYR 81 n 81 TYR 81 A ASP 82 n 82 ASP 82 A GLN 83 n 83 GLN 83 A ALA 84 n 84 ALA 84 A ALA 85 n 85 ALA 85 A GLY 86 n 86 GLY 86 A ASN 87 n 87 ASN 87 A LYS 88 n 88 LYS 88 A TRP 89 n 89 TRP 89 A 0.1198000 0.1397000 0.1179000 0.1377000 0.1669000 0.1883000 2428 3265 9.9 10.0 24566 author_defined_assembly 1 monomeric A HIS 19 A NE2 HIS 19 1_555 A HEM 91 B FE HEM 1_555 A HEM 91 B NA HEM 1_555 90.9 A HIS 19 A NE2 HIS 19 1_555 A HEM 91 B FE HEM 1_555 A HEM 91 B NB HEM 1_555 90.0 A HEM 91 B NA HEM 1_555 A HEM 91 B FE HEM 1_555 A HEM 91 B NB HEM 1_555 90.8 A HIS 19 A NE2 HIS 19 1_555 A HEM 91 B FE HEM 1_555 A HEM 91 B NC HEM 1_555 87.5 A HEM 91 B NA HEM 1_555 A HEM 91 B FE HEM 1_555 A HEM 91 B NC HEM 1_555 178.4 A HEM 91 B NB HEM 1_555 A HEM 91 B FE HEM 1_555 A HEM 91 B NC HEM 1_555 89.5 A HIS 19 A NE2 HIS 19 1_555 A HEM 91 B FE HEM 1_555 A HEM 91 B ND HEM 1_555 91.1 A HEM 91 B NA HEM 1_555 A HEM 91 B FE HEM 1_555 A HEM 91 B ND HEM 1_555 90.3 A HEM 91 B NB HEM 1_555 A HEM 91 B FE HEM 1_555 A HEM 91 B ND HEM 1_555 178.4 A HEM 91 B NC HEM 1_555 A HEM 91 B FE HEM 1_555 A HEM 91 B ND HEM 1_555 89.5 A HIS 19 A NE2 HIS 19 1_555 A HEM 91 B FE HEM 1_555 A MET 61 A SD MET 61 1_555 175.2 A HEM 91 B NA HEM 1_555 A HEM 91 B FE HEM 1_555 A MET 61 A SD MET 61 1_555 84.9 A HEM 91 B NB HEM 1_555 A HEM 91 B FE HEM 1_555 A MET 61 A SD MET 61 1_555 92.2 A HEM 91 B NC HEM 1_555 A HEM 91 B FE HEM 1_555 A MET 61 A SD MET 61 1_555 96.7 A HEM 91 B ND HEM 1_555 A HEM 91 B FE HEM 1_555 A MET 61 A SD MET 61 1_555 86.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A HOH 301 C HOH 1 25.26 2.50 121.70 146.96 A A A C N CA ALA ASP ASP 2 3 3 B Y 1 5.67 0.90 118.30 123.97 A A A CB CG OD1 ASP ASP ASP 3 3 3 N 1 -5.89 0.90 118.30 112.41 A A A CB CG OD2 ASP ASP ASP 3 3 3 N 1 -6.05 0.90 118.30 112.25 A A A CB CG OD1 ASP ASP ASP 42 42 42 B B B N 1 -10.52 1.70 123.20 112.68 A A A O C N GLY GLY GLY 43 43 44 Y 1 10.74 1.40 123.60 134.34 A A A CD NE CZ ARG ARG ARG 67 67 67 B B B N 1 3.17 0.50 120.30 123.47 A A A NE CZ NH1 ARG ARG ARG 67 67 67 A A A N 1 3.07 0.50 120.30 123.37 A A A NE CZ NH1 ARG ARG ARG 67 67 67 B B B N 1 6.15 0.90 118.30 124.45 A A A CB CG OD1 ASP ASP ASP 69 69 69 N 1 A ALA 2 B -64.68 -74.50 1 A ASP 3 91.08 83.10 1 A LYS 58 -163.64 119.33 ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY 0.077. CHEMICALLY EQUIVALENT BONDS AND ANGLE DISTANCES IN HEME RESTRAINED TO BE EQUAL WITHOUT TARGET VALUES. NO GEOMETRIC OR ADP RESTRAINTS APPLIED TO IRON ATOM. 0.1883000 0.1397000 0.1377000 1.10 25.0 8268 3265 32653 10326 10.0 97.9 EVERY 10TH REFLECTION 1 FREE R 0.0 AB INITIO ENGH AND HUBER MOEWS & KRETSINGER, J.MOL.BIOL. V. 91 (1973) 201-228. 12 642.00 822.83 1.10 25.0 151 918 43 0 724 0.013 0.033 0.014 0.016 0.148 0.130 0.010 0.005 0.043 0.108 1.10 25.0 1CTJ 32653 0.0 0.0580000 1 12.1 8.4 97.9 0.5200000 1.10 1.20 2.4 3.6 93.5 refinement SHELXL data reduction DENZO data scaling SCALEPACK CYTOCHROME C6, PROTOPORPHYRIN IX CONTAINING FE CRYSTAL STRUCTURE OF CYTOCHROME C6 1 N N 2 N N 3 N N A LEU 4 A LEU 4 HELX_P A ASN 14 A ASN 14 1 1 11 A ALA 16 A ALA 16 HELX_P A GLY 22 A GLY 22 1 2 7 A LYS 34 A LYS 34 HELX_P A PHE 40 A PHE 40 1 3 7 A ILE 47 A ILE 47 HELX_P A ASN 56 A ASN 56 1 4 10 A GLU 70 A GLU 70 HELX_P A ALA 85 A ALA 85 1 5 16 metalc 2.025 A HEM 91 B FE HEM 1_555 A HIS 19 A NE2 HIS 19 1_555 metalc 2.359 A HEM 91 B FE HEM 1_555 A MET 61 A SD MET 61 1_555 covale 1.814 A HEM 91 B CAB HEM 1_555 A CYS 15 A SG CYS 15 1_555 covale 1.828 A HEM 91 B CAC HEM 1_555 A CYS 18 A SG CYS 18 1_555 ELECTRON TRANSPORT CYTOCHROME, ELECTRON TRANSPORT, HEME CYC6_MONBR UNP 1 1 Q09099 EADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIENGKGAMPAWDGRLDEDEIAGVAAYV YDQAAGNKW 1 89 1CTJ 1 89 Q09099 A 1 1 89 BINDING SITE FOR RESIDUE HEM A 91 Software 17 A ASN 14 A ASN 14 17 1_555 A CYS 15 A CYS 15 17 1_555 A ALA 17 A ALA 17 17 3_474 A CYS 18 A CYS 18 17 1_555 A HIS 19 A HIS 19 17 1_555 A ASN 24 A ASN 24 17 1_555 A HIS 30 A HIS 30 17 1_555 A THR 31 A THR 31 17 1_555 A LEU 32 A LEU 32 17 1_555 A ALA 36 A ALA 36 17 1_555 A PHE 40 A PHE 40 17 1_555 A LEU 41 A LEU 41 17 1_555 A GLN 53 A GLN 53 17 1_555 A LYS 58 A LYS 58 17 1_555 A MET 61 A MET 61 17 1_555 A HOH 107 C HOH 17 1_555 A HOH 239 C HOH 17 1_555 146 R 3