0.012626
0.000000
0.000000
0.000000
0.012210
0.000000
0.000000
0.000000
0.021598
0.00000
0.00000
0.00000
CIS PROLINE - PRO 117
Martinez, S.E.
Huang, D.
Szczepaniak, A.
Cramer, W.A.
Smith, J.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
79.200
81.900
46.300
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H34 Fe N4 O4
618.503
HEME C
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
2
95
105
10.1016/S0969-2126(00)00012-5
8081747
Crystal structure of chloroplast cytochrome f reveals a novel cytochrome fold and unexpected heme ligation.
1994
Kluwer Academic, Dordrecht
Research in Photosynthesis: Proceedings of the Ixth International Congress on Photosynthesis
2025
0-7923-2073-5
2
495
Crystallographic Studies of the Lumen-Side Domain of Turnip Cytochrome
1992
1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
27318.189
CYTOCHROME F
1
man
polymer
618.503
HEME C
1
syn
non-polymer
18.015
water
113
nat
water
no
no
YPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEG
FELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIY
PDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQGD
AEIVLQDPLR
YPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEG
FELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIY
PDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQGD
AEIVLQDPLR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Brassica
sample
3711
Brassica rapa
2.75
55.21
atom_site
chem_comp
entity
pdbx_database_status
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Data collection
Derived calculations
Non-polymer description
Other
Structure summary
1
0
1994-05-31
1
1
2008-03-24
1
2
2011-07-13
2
0
2021-03-10
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.name
_chem_comp.pdbx_synonyms
_entity.formula_weight
_entity.pdbx_description
_pdbx_database_status.process_site
_pdbx_entity_nonpoly.comp_id
_pdbx_entity_nonpoly.name
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn_type.id
_struct_site.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
HELIX
ALL HELICES ARE IN THE LARGE DOMAIN ONLY AND ARE DENOTED BY
A LETTER ONLY.
SHEET
STRAND 3 OF SHEET SDA AND STRAND 3 OF SHEET SDB ARE PARTS
OF A PIECE OF EXTENDED CHAIN WHICH IS SPLIT BETWEEN BETWEEN
THE TWO SHEETS. RESIDUES 176 - 179 BELONG TO SHEET SDA AND
RESIDUES 181 - 185 BELONG TO SHEET SDB WITH A KINK IN
BETWEEN.
Y
BNL
1994-01-02
REL
HEC
HEME C
HOH
water
THE SEQUENCE PRESENTED IN THIS ENTRY HAS NOT BEEN DEPOSITED
IN THE SEQUENCE DATABASES. IT IS DESCRIBED IN THE *JRNL*
ARTICLE.
HEM
253
2
HEC
HEC
253
A
HOH
1
3
HOH
HOH
254
A
HOH
2
3
HOH
HOH
255
A
HOH
3
3
HOH
HOH
256
A
HOH
4
3
HOH
HOH
257
A
HOH
5
3
HOH
HOH
258
A
HOH
6
3
HOH
HOH
259
A
HOH
7
3
HOH
HOH
260
A
HOH
8
3
HOH
HOH
261
A
HOH
9
3
HOH
HOH
262
A
HOH
10
3
HOH
HOH
263
A
HOH
11
3
HOH
HOH
264
A
HOH
12
3
HOH
HOH
265
A
HOH
13
3
HOH
HOH
266
A
HOH
14
3
HOH
HOH
267
A
HOH
15
3
HOH
HOH
268
A
HOH
16
3
HOH
HOH
269
A
HOH
17
3
HOH
HOH
270
A
HOH
18
3
HOH
HOH
271
A
HOH
19
3
HOH
HOH
272
A
HOH
21
3
HOH
HOH
273
A
HOH
22
3
HOH
HOH
274
A
HOH
23
3
HOH
HOH
275
A
HOH
24
3
HOH
HOH
276
A
HOH
25
3
HOH
HOH
277
A
HOH
26
3
HOH
HOH
278
A
HOH
27
3
HOH
HOH
279
A
HOH
28
3
HOH
HOH
280
A
HOH
29
3
HOH
HOH
281
A
HOH
30
3
HOH
HOH
282
A
HOH
31
3
HOH
HOH
283
A
HOH
32
3
HOH
HOH
284
A
HOH
33
3
HOH
HOH
285
A
HOH
34
3
HOH
HOH
286
A
HOH
35
3
HOH
HOH
287
A
HOH
36
3
HOH
HOH
288
A
HOH
37
3
HOH
HOH
289
A
HOH
38
3
HOH
HOH
290
A
HOH
39
3
HOH
HOH
291
A
HOH
40
3
HOH
HOH
292
A
HOH
41
3
HOH
HOH
293
A
HOH
42
3
HOH
HOH
294
A
HOH
43
3
HOH
HOH
295
A
HOH
44
3
HOH
HOH
296
A
HOH
45
3
HOH
HOH
297
A
HOH
46
3
HOH
HOH
298
A
HOH
47
3
HOH
HOH
299
A
HOH
48
3
HOH
HOH
300
A
HOH
49
3
HOH
HOH
301
A
HOH
50
3
HOH
HOH
302
A
HOH
51
3
HOH
HOH
303
A
HOH
52
3
HOH
HOH
304
A
HOH
53
3
HOH
HOH
305
A
HOH
54
3
HOH
HOH
306
A
HOH
55
3
HOH
HOH
307
A
HOH
56
3
HOH
HOH
308
A
HOH
57
3
HOH
HOH
309
A
HOH
58
3
HOH
HOH
310
A
HOH
59
3
HOH
HOH
311
A
HOH
60
3
HOH
HOH
312
A
HOH
61
3
HOH
HOH
313
A
HOH
62
3
HOH
HOH
314
A
HOH
63
3
HOH
HOH
315
A
HOH
64
3
HOH
HOH
316
A
HOH
65
3
HOH
HOH
317
A
HOH
66
3
HOH
HOH
318
A
HOH
67
3
HOH
HOH
319
A
HOH
69
3
HOH
HOH
320
A
HOH
70
3
HOH
HOH
321
A
HOH
71
3
HOH
HOH
322
A
HOH
72
3
HOH
HOH
323
A
HOH
73
3
HOH
HOH
324
A
HOH
74
3
HOH
HOH
325
A
HOH
75
3
HOH
HOH
326
A
HOH
76
3
HOH
HOH
327
A
HOH
77
3
HOH
HOH
328
A
HOH
78
3
HOH
HOH
329
A
HOH
79
3
HOH
HOH
330
A
HOH
80
3
HOH
HOH
331
A
HOH
81
3
HOH
HOH
332
A
HOH
82
3
HOH
HOH
333
A
HOH
83
3
HOH
HOH
334
A
HOH
84
3
HOH
HOH
335
A
HOH
85
3
HOH
HOH
336
A
HOH
86
3
HOH
HOH
337
A
HOH
87
3
HOH
HOH
338
A
HOH
88
3
HOH
HOH
339
A
HOH
89
3
HOH
HOH
340
A
HOH
90
3
HOH
HOH
341
A
HOH
91
3
HOH
HOH
342
A
HOH
92
3
HOH
HOH
343
A
HOH
93
3
HOH
HOH
344
A
HOH
94
3
HOH
HOH
345
A
HOH
95
3
HOH
HOH
346
A
HOH
96
3
HOH
HOH
347
A
HOH
97
3
HOH
HOH
348
A
HOH
98
3
HOH
HOH
349
A
HOH
99
3
HOH
HOH
350
A
HOH
100
3
HOH
HOH
351
A
HOH
101
3
HOH
HOH
352
A
HOH
102
3
HOH
HOH
353
A
HOH
103
3
HOH
HOH
354
A
HOH
104
3
HOH
HOH
355
A
HOH
105
3
HOH
HOH
356
A
HOH
106
3
HOH
HOH
357
A
HOH
107
3
HOH
HOH
358
A
HOH
108
3
HOH
HOH
359
A
HOH
109
3
HOH
HOH
360
A
HOH
110
3
HOH
HOH
361
A
HOH
111
3
HOH
HOH
362
A
HOH
112
3
HOH
HOH
363
A
HOH
113
3
HOH
HOH
364
A
HOH
114
3
HOH
HOH
365
A
HOH
115
3
HOH
HOH
366
A
TYR
1
n
1
TYR
1
A
PRO
2
n
2
PRO
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
ALA
5
n
5
ALA
5
A
GLN
6
n
6
GLN
6
A
GLN
7
n
7
GLN
7
A
ASN
8
n
8
ASN
8
A
TYR
9
n
9
TYR
9
A
GLU
10
n
10
GLU
10
A
ASN
11
n
11
ASN
11
A
PRO
12
n
12
PRO
12
A
ARG
13
n
13
ARG
13
A
GLU
14
n
14
GLU
14
A
ALA
15
n
15
ALA
15
A
THR
16
n
16
THR
16
A
GLY
17
n
17
GLY
17
A
ARG
18
n
18
ARG
18
A
ILE
19
n
19
ILE
19
A
VAL
20
n
20
VAL
20
A
CYS
21
n
21
CYS
21
A
ALA
22
n
22
ALA
22
A
ASN
23
n
23
ASN
23
A
CYS
24
n
24
CYS
24
A
HIS
25
n
25
HIS
25
A
LEU
26
n
26
LEU
26
A
ALA
27
n
27
ALA
27
A
SER
28
n
28
SER
28
A
LYS
29
n
29
LYS
29
A
PRO
30
n
30
PRO
30
A
VAL
31
n
31
VAL
31
A
ASP
32
n
32
ASP
32
A
ILE
33
n
33
ILE
33
A
GLU
34
n
34
GLU
34
A
VAL
35
n
35
VAL
35
A
PRO
36
n
36
PRO
36
A
GLN
37
n
37
GLN
37
A
ALA
38
n
38
ALA
38
A
VAL
39
n
39
VAL
39
A
LEU
40
n
40
LEU
40
A
PRO
41
n
41
PRO
41
A
ASP
42
n
42
ASP
42
A
THR
43
n
43
THR
43
A
VAL
44
n
44
VAL
44
A
PHE
45
n
45
PHE
45
A
GLU
46
n
46
GLU
46
A
ALA
47
n
47
ALA
47
A
VAL
48
n
48
VAL
48
A
VAL
49
n
49
VAL
49
A
LYS
50
n
50
LYS
50
A
ILE
51
n
51
ILE
51
A
PRO
52
n
52
PRO
52
A
TYR
53
n
53
TYR
53
A
ASP
54
n
54
ASP
54
A
MET
55
n
55
MET
55
A
GLN
56
n
56
GLN
56
A
LEU
57
n
57
LEU
57
A
LYS
58
n
58
LYS
58
A
GLN
59
n
59
GLN
59
A
VAL
60
n
60
VAL
60
A
LEU
61
n
61
LEU
61
A
ALA
62
n
62
ALA
62
A
ASN
63
n
63
ASN
63
A
GLY
64
n
64
GLY
64
A
LYS
65
n
65
LYS
65
A
LYS
66
n
66
LYS
66
A
GLY
67
n
67
GLY
67
A
ALA
68
n
68
ALA
68
A
LEU
69
n
69
LEU
69
A
ASN
70
n
70
ASN
70
A
VAL
71
n
71
VAL
71
A
GLY
72
n
72
GLY
72
A
ALA
73
n
73
ALA
73
A
VAL
74
n
74
VAL
74
A
LEU
75
n
75
LEU
75
A
ILE
76
n
76
ILE
76
A
LEU
77
n
77
LEU
77
A
PRO
78
n
78
PRO
78
A
GLU
79
n
79
GLU
79
A
GLY
80
n
80
GLY
80
A
PHE
81
n
81
PHE
81
A
GLU
82
n
82
GLU
82
A
LEU
83
n
83
LEU
83
A
ALA
84
n
84
ALA
84
A
PRO
85
n
85
PRO
85
A
PRO
86
n
86
PRO
86
A
ASP
87
n
87
ASP
87
A
ARG
88
n
88
ARG
88
A
ILE
89
n
89
ILE
89
A
SER
90
n
90
SER
90
A
PRO
91
n
91
PRO
91
A
GLU
92
n
92
GLU
92
A
MET
93
n
93
MET
93
A
LYS
94
n
94
LYS
94
A
GLU
95
n
95
GLU
95
A
LYS
96
n
96
LYS
96
A
ILE
97
n
97
ILE
97
A
GLY
98
n
98
GLY
98
A
ASN
99
n
99
ASN
99
A
LEU
100
n
100
LEU
100
A
SER
101
n
101
SER
101
A
PHE
102
n
102
PHE
102
A
GLN
103
n
103
GLN
103
A
ASN
104
n
104
ASN
104
A
TYR
105
n
105
TYR
105
A
ARG
106
n
106
ARG
106
A
PRO
107
n
107
PRO
107
A
ASN
108
n
108
ASN
108
A
LYS
109
n
109
LYS
109
A
LYS
110
n
110
LYS
110
A
ASN
111
n
111
ASN
111
A
ILE
112
n
112
ILE
112
A
LEU
113
n
113
LEU
113
A
VAL
114
n
114
VAL
114
A
ILE
115
n
115
ILE
115
A
GLY
116
n
116
GLY
116
A
PRO
117
n
117
PRO
117
A
VAL
118
n
118
VAL
118
A
PRO
119
n
119
PRO
119
A
GLY
120
n
120
GLY
120
A
GLN
121
n
121
GLN
121
A
LYS
122
n
122
LYS
122
A
TYR
123
n
123
TYR
123
A
SER
124
n
124
SER
124
A
GLU
125
n
125
GLU
125
A
ILE
126
n
126
ILE
126
A
THR
127
n
127
THR
127
A
PHE
128
n
128
PHE
128
A
PRO
129
n
129
PRO
129
A
ILE
130
n
130
ILE
130
A
LEU
131
n
131
LEU
131
A
ALA
132
n
132
ALA
132
A
PRO
133
n
133
PRO
133
A
ASP
134
n
134
ASP
134
A
PRO
135
n
135
PRO
135
A
ALA
136
n
136
ALA
136
A
THR
137
n
137
THR
137
A
ASN
138
n
138
ASN
138
A
LYS
139
n
139
LYS
139
A
ASP
140
n
140
ASP
140
A
VAL
141
n
141
VAL
141
A
HIS
142
n
142
HIS
142
A
PHE
143
n
143
PHE
143
A
LEU
144
n
144
LEU
144
A
LYS
145
n
145
LYS
145
A
TYR
146
n
146
TYR
146
A
PRO
147
n
147
PRO
147
A
ILE
148
n
148
ILE
148
A
TYR
149
n
149
TYR
149
A
VAL
150
n
150
VAL
150
A
GLY
151
n
151
GLY
151
A
GLY
152
n
152
GLY
152
A
ASN
153
n
153
ASN
153
A
ARG
154
n
154
ARG
154
A
GLY
155
n
155
GLY
155
A
ARG
156
n
156
ARG
156
A
GLY
157
n
157
GLY
157
A
GLN
158
n
158
GLN
158
A
ILE
159
n
159
ILE
159
A
TYR
160
n
160
TYR
160
A
PRO
161
n
161
PRO
161
A
ASP
162
n
162
ASP
162
A
GLY
163
n
163
GLY
163
A
SER
164
n
164
SER
164
A
LYS
165
n
165
LYS
165
A
SER
166
n
166
SER
166
A
ASN
167
n
167
ASN
167
A
ASN
168
n
168
ASN
168
A
THR
169
n
169
THR
169
A
VAL
170
n
170
VAL
170
A
TYR
171
n
171
TYR
171
A
ASN
172
n
172
ASN
172
A
ALA
173
n
173
ALA
173
A
THR
174
n
174
THR
174
A
ALA
175
n
175
ALA
175
A
GLY
176
n
176
GLY
176
A
GLY
177
n
177
GLY
177
A
ILE
178
n
178
ILE
178
A
ILE
179
n
179
ILE
179
A
SER
180
n
180
SER
180
A
LYS
181
n
181
LYS
181
A
ILE
182
n
182
ILE
182
A
LEU
183
n
183
LEU
183
A
ARG
184
n
184
ARG
184
A
LYS
185
n
185
LYS
185
A
GLU
186
n
186
GLU
186
A
LYS
187
n
187
LYS
187
A
GLY
188
n
188
GLY
188
A
GLY
189
n
189
GLY
189
A
TYR
190
n
190
TYR
190
A
GLU
191
n
191
GLU
191
A
ILE
192
n
192
ILE
192
A
THR
193
n
193
THR
193
A
ILE
194
n
194
ILE
194
A
VAL
195
n
195
VAL
195
A
ASP
196
n
196
ASP
196
A
ALA
197
n
197
ALA
197
A
SER
198
n
198
SER
198
A
ASN
199
n
199
ASN
199
A
GLU
200
n
200
GLU
200
A
ARG
201
n
201
ARG
201
A
GLN
202
n
202
GLN
202
A
VAL
203
n
203
VAL
203
A
ILE
204
n
204
ILE
204
A
ASP
205
n
205
ASP
205
A
ILE
206
n
206
ILE
206
A
ILE
207
n
207
ILE
207
A
PRO
208
n
208
PRO
208
A
ARG
209
n
209
ARG
209
A
GLY
210
n
210
GLY
210
A
LEU
211
n
211
LEU
211
A
GLU
212
n
212
GLU
212
A
LEU
213
n
213
LEU
213
A
LEU
214
n
214
LEU
214
A
VAL
215
n
215
VAL
215
A
SER
216
n
216
SER
216
A
GLU
217
n
217
GLU
217
A
GLY
218
n
218
GLY
218
A
GLU
219
n
219
GLU
219
A
SER
220
n
220
SER
220
A
ILE
221
n
221
ILE
221
A
LYS
222
n
222
LYS
222
A
LEU
223
n
223
LEU
223
A
ASP
224
n
224
ASP
224
A
GLN
225
n
225
GLN
225
A
PRO
226
n
226
PRO
226
A
LEU
227
n
227
LEU
227
A
THR
228
n
228
THR
228
A
SER
229
n
229
SER
229
A
ASN
230
n
230
ASN
230
A
PRO
231
n
231
PRO
231
A
ASN
232
n
232
ASN
232
A
VAL
233
n
233
VAL
233
A
GLY
234
n
234
GLY
234
A
GLY
235
n
235
GLY
235
A
PHE
236
n
236
PHE
236
A
GLY
237
n
237
GLY
237
A
GLN
238
n
238
GLN
238
A
GLY
239
n
239
GLY
239
A
ASP
240
n
240
ASP
240
A
ALA
241
n
241
ALA
241
A
GLU
242
n
242
GLU
242
A
ILE
243
n
243
ILE
243
A
VAL
244
n
244
VAL
244
A
LEU
245
n
245
LEU
245
A
GLN
246
n
246
GLN
246
A
ASP
247
n
247
ASP
247
A
PRO
248
n
248
PRO
248
A
LEU
249
n
249
LEU
249
A
ARG
250
n
250
ARG
250
A
author_defined_assembly
1
monomeric
A
TYR
1
A
N
TYR
1
1_555
A
HEC
253
B
FE
HEC
1_555
A
HEC
253
B
NA
HEC
1_555
90.0
A
TYR
1
A
N
TYR
1
1_555
A
HEC
253
B
FE
HEC
1_555
A
HEC
253
B
NB
HEC
1_555
96.1
A
HEC
253
B
NA
HEC
1_555
A
HEC
253
B
FE
HEC
1_555
A
HEC
253
B
NB
HEC
1_555
91.1
A
TYR
1
A
N
TYR
1
1_555
A
HEC
253
B
FE
HEC
1_555
A
HEC
253
B
NC
HEC
1_555
88.4
A
HEC
253
B
NA
HEC
1_555
A
HEC
253
B
FE
HEC
1_555
A
HEC
253
B
NC
HEC
1_555
178.3
A
HEC
253
B
NB
HEC
1_555
A
HEC
253
B
FE
HEC
1_555
A
HEC
253
B
NC
HEC
1_555
88.4
A
TYR
1
A
N
TYR
1
1_555
A
HEC
253
B
FE
HEC
1_555
A
HEC
253
B
ND
HEC
1_555
86.3
A
HEC
253
B
NA
HEC
1_555
A
HEC
253
B
FE
HEC
1_555
A
HEC
253
B
ND
HEC
1_555
89.8
A
HEC
253
B
NB
HEC
1_555
A
HEC
253
B
FE
HEC
1_555
A
HEC
253
B
ND
HEC
1_555
177.5
A
HEC
253
B
NC
HEC
1_555
A
HEC
253
B
FE
HEC
1_555
A
HEC
253
B
ND
HEC
1_555
90.9
A
TYR
1
A
N
TYR
1
1_555
A
HEC
253
B
FE
HEC
1_555
A
HIS
25
A
NE2
HIS
25
1_555
174.4
A
HEC
253
B
NA
HEC
1_555
A
HEC
253
B
FE
HEC
1_555
A
HIS
25
A
NE2
HIS
25
1_555
92.5
A
HEC
253
B
NB
HEC
1_555
A
HEC
253
B
FE
HEC
1_555
A
HIS
25
A
NE2
HIS
25
1_555
88.9
A
HEC
253
B
NC
HEC
1_555
A
HEC
253
B
FE
HEC
1_555
A
HIS
25
A
NE2
HIS
25
1_555
89.1
A
HEC
253
B
ND
HEC
1_555
A
HEC
253
B
FE
HEC
1_555
A
HIS
25
A
NE2
HIS
25
1_555
88.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
34
A
N
GLU
34
A
O
VAL
48
A
O
VAL
48
A
N
ALA
47
A
N
ALA
47
A
O
PHE
128
A
O
PHE
128
A
N
LEU
131
A
N
LEU
131
A
O
GLU
82
A
O
GLU
82
A
N
VAL
39
A
N
VAL
39
A
O
VAL
244
A
O
VAL
244
A
N
GLY
239
A
N
GLY
239
A
O
VAL
150
A
O
VAL
150
A
N
GLY
151
A
N
GLY
151
A
O
VAL
74
A
O
VAL
74
A
N
ALA
73
A
N
ALA
73
A
O
ILE
115
A
O
ILE
115
A
N
VAL
114
A
N
VAL
114
A
O
GLN
103
A
O
GLN
103
A
O
GLN
59
A
O
GLN
59
A
N
GLY
67
A
N
GLY
67
A
N
TYR
160
A
N
TYR
160
A
O
SER
164
A
O
SER
164
A
N
ASP
205
A
N
ASP
205
A
O
ILE
192
A
O
ILE
192
A
N
VAL
195
A
N
VAL
195
A
O
ILE
178
A
O
ILE
178
A
O
GLY
177
A
O
GLY
177
A
N
ILE
221
A
N
ILE
221
A
N
ASP
205
A
N
ASP
205
A
O
ILE
192
A
O
ILE
192
A
O
GLU
191
A
O
GLU
191
A
N
LEU
183
A
N
LEU
183
1
-13.85
1.70
113.30
99.45
A
A
A
CA
CB
CG
MET
MET
MET
55
55
55
N
1
3.78
0.50
120.30
124.08
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
154
154
154
N
1
3.97
0.50
120.30
124.27
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
156
156
156
N
1
-5.37
0.50
120.30
114.93
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
156
156
156
N
1
A
ASN
8
-144.63
30.71
1
A
ASN
99
-151.69
46.59
1
A
ASN
138
-163.16
108.80
1
A
ASN
168
-117.65
50.07
1
A
LEU
249
-108.64
-130.56
0.2770000
0.1980000
0.1980000
2.3
6.0
10903
1
1.0
2.3
6.0
113
2081
43
0
1925
0.014
2.99
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
CYTOCHROME F (REDUCED)
CRYSTAL STRUCTURE OF CHLOROPLAST CYTOCHROME F REVEALS A NOVEL CYTOCHROME FOLD AND UNEXPECTED HEME LIGATION
1
N
N
2
N
N
3
N
N
A
TYR
1
A
TYR
1
HELX_P
MIXED 4/16 AND 3/10 H BONDING
A
TYR
9
A
TYR
9
1
A
9
A
ILE
19
A
ILE
19
HELX_P
MIXED 4/16 AND 3/10 H BONDING
A
HIS
25
A
HIS
25
1
B
7
A
SER
90
A
SER
90
HELX_P
A
ILE
97
A
ILE
97
1
C
8
covale
1.798
none
A
CYS
21
A
SG
CYS
21
1_555
A
HEC
253
B
CAB
HEC
1_555
covale
1.792
none
A
CYS
24
A
SG
CYS
24
1_555
A
HEC
253
B
CAC
HEC
1_555
metalc
1.980
A
TYR
1
A
N
TYR
1
1_555
A
HEC
253
B
FE
HEC
1_555
metalc
1.966
A
HIS
25
A
NE2
HIS
25
1_555
A
HEC
253
B
FE
HEC
1_555
ELECTRON TRANSPORT(CYTOCHROME)
ELECTRON TRANSPORT(CYTOCHROME)
A
GLY
116
A
GLY
116
1
A
PRO
117
A
PRO
117
-1.12
CYF_BRARA
UNP
1
1
P36438
MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVF
EAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSE
ITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVID
IIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLGSVVLAQIFLVLKKKQFEKVQLSEMNF
36
285
1CTM
1
250
P36438
A
1
1
250
4
6
2
2
4
4
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PRO
30
A
PRO
30
A
PRO
36
A
PRO
36
A
THR
43
A
THR
43
A
ILE
51
A
ILE
51
A
SER
124
A
SER
124
A
ALA
132
A
ALA
132
A
GLU
82
A
GLU
82
A
ALA
84
A
ALA
84
A
GLN
37
A
GLN
37
A
VAL
39
A
VAL
39
A
GLY
234
A
GLY
234
A
GLN
246
A
GLN
246
A
LEU
144
A
LEU
144
A
GLY
155
A
GLY
155
A
ASN
70
A
ASN
70
A
LEU
77
A
LEU
77
A
ASN
111
A
ASN
111
A
VAL
118
A
VAL
118
A
GLN
103
A
GLN
103
A
TYR
105
A
TYR
105
A
GLN
59
A
GLN
59
A
LEU
61
A
LEU
61
A
LYS
65
A
LYS
65
A
GLY
67
A
GLY
67
A
GLN
158
A
GLN
158
A
TYR
160
A
TYR
160
A
SER
164
A
SER
164
A
SER
166
A
SER
166
A
ARG
201
A
ARG
201
A
PRO
208
A
PRO
208
A
GLY
189
A
GLY
189
A
ASP
196
A
ASP
196
A
GLY
176
A
GLY
176
A
ILE
179
A
ILE
179
A
GLU
219
A
GLU
219
A
LYS
222
A
LYS
222
A
ARG
201
A
ARG
201
A
PRO
208
A
PRO
208
A
GLY
189
A
GLY
189
A
ASP
196
A
ASP
196
A
LYS
181
A
LYS
181
A
LYS
185
A
LYS
185
A
GLU
219
A
GLU
219
A
LYS
222
A
LYS
222
BINDING SITE FOR RESIDUE HEC A 253
A
HEC
253
Software
17
A
TYR
1
A
TYR
1
17
1_555
A
PHE
4
A
PHE
4
17
1_555
A
CYS
21
A
CYS
21
17
1_555
A
CYS
24
A
CYS
24
17
1_555
A
HIS
25
A
HIS
25
17
1_555
A
GLN
59
A
GLN
59
17
1_555
A
ASN
70
A
ASN
70
17
1_555
A
VAL
71
A
VAL
71
17
1_555
A
GLY
72
A
GLY
72
17
1_555
A
ASN
153
A
ASN
153
17
1_555
A
GLY
155
A
GLY
155
17
1_555
A
ARG
156
A
ARG
156
17
1_555
A
GLY
157
A
GLY
157
17
1_555
A
ILE
159
A
ILE
159
17
1_555
A
TYR
160
A
TYR
160
17
1_555
A
PRO
161
A
PRO
161
17
1_555
A
HOH
297
C
HOH
17
1_555
19
P 21 21 21