0.008313 0.004799 0.000000 0.000000 0.009599 0.000000 0.000000 0.000000 0.012755 0.00000 0.00000 0.00000 Xiang, S. Short, S.A. Wolfenden, R. Carter, C.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 120.300 120.300 78.400 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C9 H14 N2 O6 246.217 4-HYDROXY-3,4-DIHYDRO-ZEBULARINE non-polymer Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N N N 392 N C N 393 N O N 394 N N N 395 R C N 396 N O N 397 N C N 398 N C N 399 R C N 400 R C N 401 N O N 402 S C N 403 N O N 404 R C N 405 N O N 406 N C N 407 N O N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing US Biochemistry BICHAW 0033 0006-2960 34 4516 4523 10.1021/bi00014a003 7718553 Transition-state selectivity for a single hydroxyl group during catalysis by cytidine deaminase. 1995 10.2210/pdb1ctu/pdb pdb_00001ctu 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 IMAGE PLATE RIGAKU RAXIS M x-ray 1 1.5418 1.0 1.5418 31569.785 CYTIDINE DEAMINASE 3.5.4.5 1 man polymer 65.409 ZINC ION 1 syn non-polymer 246.217 4-HYDROXY-3,4-DIHYDRO-ZEBULARINE 1 syn non-polymer 18.015 water 48 nat water no no MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGV SGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDY LPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPL QGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLLA MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGV SGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDY LPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPL QGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLLA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia sample 562 Escherichia coli 5.19 76.29 pdbx_database_status software software chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Other Refinement description Data collection Refinement description Data collection Database references Derived calculations 1 0 1995-05-08 1 1 2008-03-03 1 2 2011-07-13 1 3 2019-07-17 1 4 2019-08-14 1 5 2024-02-07 _pdbx_database_status.process_site _software.classification _software.classification _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1995-02-11 REL REL ZN ZINC ION ZEB 4-HYDROXY-3,4-DIHYDRO-ZEBULARINE HOH water ZN 296 2 ZN ZN 296 A ZEB 295 3 ZEB ZEB 295 A HOH 503 4 HOH HOH 503 A HOH 505 4 HOH HOH 505 A HOH 506 4 HOH HOH 506 A HOH 509 4 HOH HOH 509 A HOH 511 4 HOH HOH 511 A HOH 515 4 HOH HOH 515 A HOH 516 4 HOH HOH 516 A HOH 517 4 HOH HOH 517 A HOH 518 4 HOH HOH 518 A HOH 522 4 HOH HOH 522 A HOH 525 4 HOH HOH 525 A HOH 526 4 HOH HOH 526 A HOH 527 4 HOH HOH 527 A HOH 528 4 HOH HOH 528 A HOH 531 4 HOH HOH 531 A HOH 533 4 HOH HOH 533 A HOH 536 4 HOH HOH 536 A HOH 538 4 HOH HOH 538 A HOH 539 4 HOH HOH 539 A HOH 540 4 HOH HOH 540 A HOH 541 4 HOH HOH 541 A HOH 542 4 HOH HOH 542 A HOH 550 4 HOH HOH 550 A HOH 555 4 HOH HOH 555 A HOH 557 4 HOH HOH 557 A HOH 558 4 HOH HOH 558 A HOH 560 4 HOH HOH 560 A HOH 561 4 HOH HOH 561 A HOH 562 4 HOH HOH 562 A HOH 563 4 HOH HOH 563 A HOH 564 4 HOH HOH 564 A HOH 565 4 HOH HOH 565 A HOH 566 4 HOH HOH 566 A HOH 568 4 HOH HOH 568 A HOH 569 4 HOH HOH 569 A HOH 573 4 HOH HOH 573 A HOH 575 4 HOH HOH 575 A HOH 601 4 HOH HOH 601 A HOH 602 4 HOH HOH 602 A HOH 603 4 HOH HOH 603 A HOH 604 4 HOH HOH 604 A HOH 605 4 HOH HOH 605 A HOH 607 4 HOH HOH 607 A HOH 610 4 HOH HOH 610 A HOH 611 4 HOH HOH 611 A HOH 613 4 HOH HOH 613 A HOH 615 4 HOH HOH 615 A HOH 616 4 HOH HOH 616 A MET 1 n 1 MET 1 A HIS 2 n 2 HIS 2 A PRO 3 n 3 PRO 3 A ARG 4 n 4 ARG 4 A PHE 5 n 5 PHE 5 A GLN 6 n 6 GLN 6 A THR 7 n 7 THR 7 A ALA 8 n 8 ALA 8 A PHE 9 n 9 PHE 9 A ALA 10 n 10 ALA 10 A GLN 11 n 11 GLN 11 A LEU 12 n 12 LEU 12 A ALA 13 n 13 ALA 13 A ASP 14 n 14 ASP 14 A ASN 15 n 15 ASN 15 A LEU 16 n 16 LEU 16 A GLN 17 n 17 GLN 17 A SER 18 n 18 SER 18 A ALA 19 n 19 ALA 19 A LEU 20 n 20 LEU 20 A GLU 21 n 21 GLU 21 A PRO 22 n 22 PRO 22 A ILE 23 n 23 ILE 23 A LEU 24 n 24 LEU 24 A ALA 25 n 25 ALA 25 A ASP 26 n 26 ASP 26 A LYS 27 n 27 LYS 27 A TYR 28 n 28 TYR 28 A PHE 29 n 29 PHE 29 A PRO 30 n 30 PRO 30 A ALA 31 n 31 ALA 31 A LEU 32 n 32 LEU 32 A LEU 33 n 33 LEU 33 A THR 34 n 34 THR 34 A GLY 35 n 35 GLY 35 A GLU 36 n 36 GLU 36 A GLN 37 n 37 GLN 37 A VAL 38 n 38 VAL 38 A SER 39 n 39 SER 39 A SER 40 n 40 SER 40 A LEU 41 n 41 LEU 41 A LYS 42 n 42 LYS 42 A SER 43 n 43 SER 43 A ALA 44 n 44 ALA 44 A THR 45 n 45 THR 45 A GLY 46 n 46 GLY 46 A LEU 47 n 47 LEU 47 A ASP 48 n 48 ASP 48 A GLU 49 n 49 GLU 49 A ASP 50 n 50 ASP 50 A ALA 51 n 51 ALA 51 A LEU 52 n 52 LEU 52 A ALA 53 n 53 ALA 53 A PHE 54 n 54 PHE 54 A ALA 55 n 55 ALA 55 A LEU 56 n 56 LEU 56 A LEU 57 n 57 LEU 57 A PRO 58 n 58 PRO 58 A LEU 59 n 59 LEU 59 A ALA 60 n 60 ALA 60 A ALA 61 n 61 ALA 61 A ALA 62 n 62 ALA 62 A CYS 63 n 63 CYS 63 A ALA 64 n 64 ALA 64 A ARG 65 n 65 ARG 65 A THR 66 n 66 THR 66 A PRO 67 n 67 PRO 67 A LEU 68 n 68 LEU 68 A SER 69 n 69 SER 69 A ASN 70 n 70 ASN 70 A PHE 71 n 71 PHE 71 A ASN 72 n 72 ASN 72 A VAL 73 n 73 VAL 73 A GLY 74 n 74 GLY 74 A ALA 75 n 75 ALA 75 A ILE 76 n 76 ILE 76 A ALA 77 n 77 ALA 77 A ARG 78 n 78 ARG 78 A GLY 79 n 79 GLY 79 A VAL 80 n 80 VAL 80 A SER 81 n 81 SER 81 A GLY 82 n 82 GLY 82 A THR 83 n 83 THR 83 A TRP 84 n 84 TRP 84 A TYR 85 n 85 TYR 85 A PHE 86 n 86 PHE 86 A GLY 87 n 87 GLY 87 A ALA 88 n 88 ALA 88 A ASN 89 n 89 ASN 89 A MET 90 n 90 MET 90 A GLU 91 n 91 GLU 91 A PHE 92 n 92 PHE 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A ALA 95 n 95 ALA 95 A THR 96 n 96 THR 96 A MET 97 n 97 MET 97 A GLN 98 n 98 GLN 98 A GLN 99 n 99 GLN 99 A THR 100 n 100 THR 100 A VAL 101 n 101 VAL 101 A HIS 102 n 102 HIS 102 A ALA 103 n 103 ALA 103 A GLU 104 n 104 GLU 104 A GLN 105 n 105 GLN 105 A SER 106 n 106 SER 106 A ALA 107 n 107 ALA 107 A ILE 108 n 108 ILE 108 A SER 109 n 109 SER 109 A HIS 110 n 110 HIS 110 A ALA 111 n 111 ALA 111 A TRP 112 n 112 TRP 112 A LEU 113 n 113 LEU 113 A SER 114 n 114 SER 114 A GLY 115 n 115 GLY 115 A GLU 116 n 116 GLU 116 A LYS 117 n 117 LYS 117 A ALA 118 n 118 ALA 118 A LEU 119 n 119 LEU 119 A ALA 120 n 120 ALA 120 A ALA 121 n 121 ALA 121 A ILE 122 n 122 ILE 122 A THR 123 n 123 THR 123 A VAL 124 n 124 VAL 124 A ASN 125 n 125 ASN 125 A TYR 126 n 126 TYR 126 A THR 127 n 127 THR 127 A PRO 128 n 128 PRO 128 A CYS 129 n 129 CYS 129 A GLY 130 n 130 GLY 130 A HIS 131 n 131 HIS 131 A CYS 132 n 132 CYS 132 A ARG 133 n 133 ARG 133 A GLN 134 n 134 GLN 134 A PHE 135 n 135 PHE 135 A MET 136 n 136 MET 136 A ASN 137 n 137 ASN 137 A GLU 138 n 138 GLU 138 A LEU 139 n 139 LEU 139 A ASN 140 n 140 ASN 140 A SER 141 n 141 SER 141 A GLY 142 n 142 GLY 142 A LEU 143 n 143 LEU 143 A ASP 144 n 144 ASP 144 A LEU 145 n 145 LEU 145 A ARG 146 n 146 ARG 146 A ILE 147 n 147 ILE 147 A HIS 148 n 148 HIS 148 A LEU 149 n 149 LEU 149 A PRO 150 n 150 PRO 150 A GLY 151 n 151 GLY 151 A ARG 152 n 152 ARG 152 A GLU 153 n 153 GLU 153 A ALA 154 n 154 ALA 154 A HIS 155 n 155 HIS 155 A ALA 156 n 156 ALA 156 A LEU 157 n 157 LEU 157 A ARG 158 n 158 ARG 158 A ASP 159 n 159 ASP 159 A TYR 160 n 160 TYR 160 A LEU 161 n 161 LEU 161 A PRO 162 n 162 PRO 162 A ASP 163 n 163 ASP 163 A ALA 164 n 164 ALA 164 A PHE 165 n 165 PHE 165 A GLY 166 n 166 GLY 166 A PRO 167 n 167 PRO 167 A LYS 168 n 168 LYS 168 A ASP 169 n 169 ASP 169 A LEU 170 n 170 LEU 170 A GLU 171 n 171 GLU 171 A ILE 172 n 172 ILE 172 A LYS 173 n 173 LYS 173 A THR 174 n 174 THR 174 A LEU 175 n 175 LEU 175 A LEU 176 n 176 LEU 176 A MET 177 n 177 MET 177 A ASP 178 n 178 ASP 178 A GLU 179 n 179 GLU 179 A GLN 180 n 180 GLN 180 A ASP 181 n 181 ASP 181 A HIS 182 n 182 HIS 182 A GLY 183 n 183 GLY 183 A TYR 184 n 184 TYR 184 A ALA 185 n 185 ALA 185 A LEU 186 n 186 LEU 186 A THR 187 n 187 THR 187 A GLY 188 n 188 GLY 188 A ASP 189 n 189 ASP 189 A ALA 190 n 190 ALA 190 A LEU 191 n 191 LEU 191 A SER 192 n 192 SER 192 A GLN 193 n 193 GLN 193 A ALA 194 n 194 ALA 194 A ALA 195 n 195 ALA 195 A ILE 196 n 196 ILE 196 A ALA 197 n 197 ALA 197 A ALA 198 n 198 ALA 198 A ALA 199 n 199 ALA 199 A ASN 200 n 200 ASN 200 A ARG 201 n 201 ARG 201 A SER 202 n 202 SER 202 A HIS 203 n 203 HIS 203 A MET 204 n 204 MET 204 A PRO 205 n 205 PRO 205 A TYR 206 n 206 TYR 206 A SER 207 n 207 SER 207 A LYS 208 n 208 LYS 208 A SER 209 n 209 SER 209 A PRO 210 n 210 PRO 210 A SER 211 n 211 SER 211 A GLY 212 n 212 GLY 212 A VAL 213 n 213 VAL 213 A ALA 214 n 214 ALA 214 A LEU 215 n 215 LEU 215 A GLU 216 n 216 GLU 216 A CYS 217 n 217 CYS 217 A LYS 218 n 218 LYS 218 A ASP 219 n 219 ASP 219 A GLY 220 n 220 GLY 220 A ARG 221 n 221 ARG 221 A ILE 222 n 222 ILE 222 A PHE 223 n 223 PHE 223 A SER 224 n 224 SER 224 A GLY 225 n 225 GLY 225 A SER 226 n 226 SER 226 A TYR 227 n 227 TYR 227 A ALA 228 n 228 ALA 228 A GLU 229 n 229 GLU 229 A ASN 230 n 230 ASN 230 A ALA 231 n 231 ALA 231 A ALA 232 n 232 ALA 232 A PHE 233 n 233 PHE 233 A ASN 234 n 234 ASN 234 A PRO 235 n 235 PRO 235 A THR 236 n 236 THR 236 A LEU 237 n 237 LEU 237 A PRO 238 n 238 PRO 238 A PRO 239 n 239 PRO 239 A LEU 240 n 240 LEU 240 A GLN 241 n 241 GLN 241 A GLY 242 n 242 GLY 242 A ALA 243 n 243 ALA 243 A LEU 244 n 244 LEU 244 A ILE 245 n 245 ILE 245 A LEU 246 n 246 LEU 246 A LEU 247 n 247 LEU 247 A ASN 248 n 248 ASN 248 A LEU 249 n 249 LEU 249 A LYS 250 n 250 LYS 250 A GLY 251 n 251 GLY 251 A TYR 252 n 252 TYR 252 A ASP 253 n 253 ASP 253 A TYR 254 n 254 TYR 254 A PRO 255 n 255 PRO 255 A ASP 256 n 256 ASP 256 A ILE 257 n 257 ILE 257 A GLN 258 n 258 GLN 258 A ARG 259 n 259 ARG 259 A ALA 260 n 260 ALA 260 A VAL 261 n 261 VAL 261 A LEU 262 n 262 LEU 262 A ALA 263 n 263 ALA 263 A GLU 264 n 264 GLU 264 A LYS 265 n 265 LYS 265 A ALA 266 n 266 ALA 266 A ASP 267 n 267 ASP 267 A ALA 268 n 268 ALA 268 A PRO 269 n 269 PRO 269 A LEU 270 n 270 LEU 270 A ILE 271 n 271 ILE 271 A GLN 272 n 272 GLN 272 A TRP 273 n 273 TRP 273 A ASP 274 n 274 ASP 274 A ALA 275 n 275 ALA 275 A THR 276 n 276 THR 276 A SER 277 n 277 SER 277 A ALA 278 n 278 ALA 278 A THR 279 n 279 THR 279 A LEU 280 n 280 LEU 280 A LYS 281 n 281 LYS 281 A ALA 282 n 282 ALA 282 A LEU 283 n 283 LEU 283 A GLY 284 n 284 GLY 284 A CYS 285 n 285 CYS 285 A HIS 286 n 286 HIS 286 A SER 287 n 287 SER 287 A ILE 288 n 288 ILE 288 A ASP 289 n 289 ASP 289 A ARG 290 n 290 ARG 290 A VAL 291 n 291 VAL 291 A LEU 292 n 292 LEU 292 A LEU 293 n 293 LEU 293 A ALA 294 n 294 ALA 294 A author_and_software_defined_assembly PISA,PQS 2 dimeric 5300 -102 19610 A HIS 102 A ND1 HIS 102 1_555 A ZN 296 B ZN ZN 1_555 A CYS 129 A SG CYS 129 1_555 104.2 A HIS 102 A ND1 HIS 102 1_555 A ZN 296 B ZN ZN 1_555 A CYS 132 A SG CYS 132 1_555 107.5 A CYS 129 A SG CYS 129 1_555 A ZN 296 B ZN ZN 1_555 A CYS 132 A SG CYS 132 1_555 109.4 A HIS 102 A ND1 HIS 102 1_555 A ZN 296 B ZN ZN 1_555 A ZEB 295 C O4 ZEB 1_555 131.3 A CYS 129 A SG CYS 129 1_555 A ZN 296 B ZN ZN 1_555 A ZEB 295 C O4 ZEB 1_555 92.3 A CYS 132 A SG CYS 132 1_555 A ZN 296 B ZN ZN 1_555 A ZEB 295 C O4 ZEB 1_555 109.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 85 A O TYR 85 A N ALA 77 A N ALA 77 A O ILE 76 A O ILE 76 A N THR 123 A N THR 123 A O ILE 122 A O ILE 122 A N ARG 146 A N ARG 146 A O PHE 223 A O PHE 223 A N LEU 215 A N LEU 215 A O GLY 212 A O GLY 212 A N ALA 263 A N ALA 263 A O ALA 260 A O ALA 260 A N ASP 289 A N ASP 289 1 A C1' ZEB 295 PLANAR 1 5.65 0.90 118.30 123.95 A A A CB CG OD1 ASP ASP ASP 14 14 14 N 1 -6.18 0.90 118.30 112.12 A A A CB CG OD2 ASP ASP ASP 14 14 14 N 1 -17.58 2.10 122.30 104.72 A A A C N CA THR GLY GLY 45 46 46 Y 1 7.09 0.90 118.30 125.39 A A A CB CG OD1 ASP ASP ASP 50 50 50 N 1 -5.80 0.90 118.30 112.50 A A A CB CG OD2 ASP ASP ASP 50 50 50 N 1 -3.52 0.50 120.30 116.78 A A A NE CZ NH1 ARG ARG ARG 65 65 65 N 1 4.41 0.50 120.30 124.71 A A A NE CZ NH1 ARG ARG ARG 133 133 133 N 1 -3.14 0.50 120.30 117.16 A A A NE CZ NH2 ARG ARG ARG 133 133 133 N 1 7.29 0.90 118.30 125.59 A A A CB CG OD1 ASP ASP ASP 181 181 181 N 1 -9.32 0.90 118.30 108.98 A A A CB CG OD2 ASP ASP ASP 181 181 181 N 1 -5.85 0.90 118.30 112.45 A A A CB CG OD1 ASP ASP ASP 189 189 189 N 1 5.58 0.90 118.30 123.88 A A A CB CG OD2 ASP ASP ASP 189 189 189 N 1 6.30 0.90 118.30 124.60 A A A CB CG OD1 ASP ASP ASP 219 219 219 N 1 -8.28 0.90 118.30 110.02 A A A CB CG OD2 ASP ASP ASP 219 219 219 N 1 3.57 0.50 120.30 123.87 A A A NE CZ NH2 ARG ARG ARG 259 259 259 N 1 -5.49 0.90 118.30 112.81 A A A CB CG OD1 ASP ASP ASP 289 289 289 N 1 -3.34 0.50 120.30 116.96 A A A NE CZ NH1 ARG ARG ARG 290 290 290 N 1 3.61 0.50 120.30 123.91 A A A NE CZ NH2 ARG ARG ARG 290 290 290 N 1 A A CD OE2 GLU GLU 36 36 0.075 0.011 1.252 1.327 N 1 A A CD OE2 GLU GLU 91 91 0.067 0.011 1.252 1.319 N 1 A A CD OE1 GLU GLU 153 153 0.076 0.011 1.252 1.328 N 1 A A CD OE1 GLU GLU 179 179 0.068 0.011 1.252 1.320 N 1 A A CD OE2 GLU GLU 216 216 0.070 0.011 1.252 1.322 N 1 A A CD OE2 GLU GLU 264 264 0.069 0.011 1.252 1.321 N 1 A GLU 21 -38.20 -33.64 1 A LEU 68 -87.28 -72.71 1 A ALA 95 -110.56 -142.47 1 A MET 177 94.46 -4.70 1 A ASP 181 -166.06 98.14 1 A MET 204 -150.43 47.67 1 A ASP 219 -63.93 8.67 1 A PHE 233 65.74 -73.32 29.4 0.1900000 0.1900000 2.3 20.0 24112 1 2.0 0.25 2.3 20.0 48 2286 18 0 2220 0.01 2.4 1CTU 25451 1. 1 3.0 80. model building X-PLOR 3.0 refinement TNT 5A refinement X-PLOR 3.0 data reduction R-AXIS phasing X-PLOR 3.0 TRANSITION-STATE SELECTIVITY FOR A SINGLE OH GROUP DURING CATALYSIS BY CYTIDINE DEAMINASE 1 N N 2 N N 3 N N 4 N N SYMMETRY THE CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS PRESENTED BELOW GENERATE THE SUBUNITS OF THE POLYMERIC MOLECULE. APPLIED TO RESIDUES: 1 .. 616 SYMMETRY1 1 0.000000 1.000000 0.000000 0.00000 SYMMETRY2 1 1.000000 0.000000 0.000000 0.00000 SYMMETRY3 1 0.000000 0.000000 -1.000000 0.00000 A PRO 3 A PRO 3 HELX_P A GLN 11 A GLN 11 5 1 9 A ASP 14 A ASP 14 HELX_P A GLU 21 A GLU 21 1 2 8 A GLY 35 A GLY 35 HELX_P A ALA 44 A ALA 44 1 3 10 A GLU 49 A GLU 49 HELX_P A CYS 63 A CYS 63 1 4 15 A MET 97 A MET 97 HELX_P A GLN 99 A GLN 99 5 5 3 A ALA 103 A ALA 103 HELX_P A LEU 113 A LEU 113 1 6 11 A GLY 130 A GLY 130 HELX_P A GLU 138 A GLU 138 1 7 9 A GLY 142 A GLY 142 HELX_P A ASP 144 A ASP 144 5 8 3 A LEU 157 A LEU 157 HELX_P A TYR 160 A TYR 160 1 9 4 A PRO 167 A PRO 167 HELX_P A LEU 170 A LEU 170 5 10 4 A ALA 190 A ALA 190 HELX_P A ARG 201 A ARG 201 1 11 12 A PRO 239 A PRO 239 HELX_P A LEU 249 A LEU 249 1 12 11 A TYR 254 A TYR 254 HELX_P A ASP 256 A ASP 256 5 13 3 A TRP 273 A TRP 273 HELX_P A ALA 282 A ALA 282 1 14 10 metalc 2.026 A HIS 102 A ND1 HIS 102 1_555 A ZN 296 B ZN ZN 1_555 metalc 2.340 A CYS 129 A SG CYS 129 1_555 A ZN 296 B ZN ZN 1_555 metalc 2.195 A CYS 132 A SG CYS 132 1_555 A ZN 296 B ZN ZN 1_555 metalc 1.951 A ZEB 295 C O4 ZEB 1_555 A ZN 296 B ZN ZN 1_555 HYDROLASE HYDROLASE CDD_ECOLI UNP 1 1 P0ABF6 MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGV SGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDY LPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPL QGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLLA 1 294 1CTU 1 294 P0ABF6 A 1 1 294 4 4 anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel A TRP 84 A TRP 84 A ALA 88 A ALA 88 A GLY 74 A GLY 74 A GLY 79 A GLY 79 A LEU 119 A LEU 119 A VAL 124 A VAL 124 A ARG 146 A ARG 146 A LEU 149 A LEU 149 A ILE 222 A ILE 222 A SER 226 A SER 226 A SER 211 A SER 211 A CYS 217 A CYS 217 A ILE 257 A ILE 257 A GLU 264 A GLU 264 A ILE 288 A ILE 288 A LEU 292 A LEU 292 CATALYTIC SITE IN WHICH A ZINC IS COORDINATED IN A TETRAHEDRAL LIGAND FIELD Author 4 BINDING SITE FOR RESIDUE ZN A 296 A ZN 296 Software 5 BINDING SITE FOR RESIDUE ZEB A 295 A ZEB 295 Software 13 A HIS 102 A HIS 102 4 1_555 A GLU 104 A GLU 104 4 1_555 A CYS 129 A CYS 129 4 1_555 A CYS 132 A CYS 132 4 1_555 A HIS 102 A HIS 102 5 1_555 A GLU 104 A GLU 104 5 1_555 A CYS 129 A CYS 129 5 1_555 A CYS 132 A CYS 132 5 1_555 A ZEB 295 C ZEB 5 1_555 A ASN 89 A ASN 89 13 1_555 A GLU 91 A GLU 91 13 1_555 A THR 100 A THR 100 13 1_555 A VAL 101 A VAL 101 13 1_555 A HIS 102 A HIS 102 13 1_555 A ALA 103 A ALA 103 13 1_555 A GLU 104 A GLU 104 13 1_555 A PRO 128 A PRO 128 13 1_555 A CYS 129 A CYS 129 13 1_555 A CYS 132 A CYS 132 13 1_555 A ALA 231 A ALA 231 13 4_555 A PHE 233 A PHE 233 13 4_555 A ZN 296 B ZN 13 1_555 152 P 31 2 1