0.016356 0.009443 0.000000 0.000000 0.018886 0.000000 0.000000 0.000000 0.005127 0.00000 0.00000 0.00000 Hofmann, B. Schomburg, D. Hecht, H.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 61.139 61.139 195.063 C2 H3 O2 -1 59.044 ACETATE ION non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C15 H30 N5 O5 1 360.429 N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK Acta Crystallogr.,Sect.A ACACEQ 0621 0108-7673 49 102 -1 Crystal Structure of a Thiol Proteinase from Staphylococcus Aureus V-8 in the E-64 Inhibitor Complex 1993 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 283 1 MIRRORS IMAGE PLATE 1994-02 MARRESEARCH SI(111) M x-ray 1 1.0 1.0 BW6 MPG/DESY, HAMBURG 1.0 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 19870.131 STAPHOPAIN 3.4.22.- 1 nat polymer 59.044 ACETATE ION 1 syn non-polymer 360.429 N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE 1 syn non-polymer 18.015 water 123 nat water THIOL PROTEINASE FROM STAPHYLOCOCCUS AUREUS V-8 no no YNEQYVNKLENFKIRETQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFTGLTPREMIYFGQTQGRS PQLLNRMTTYNEVDNLTKNNKGIAILGSRVESRNGMHAGHAMAVVGNAKLNNGQEVIIIWNPWDNGFMTQDAKNNVIPVS NGDHYQWYSSIYGY YNEQYVNKLENFKIRETQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFTGLTPREMIYFGQTQGRS PQLLNRMTTYNEVDNLTKNNKGIAILGSRVESRNGMHAGHAMAVVGNAKLNNGQEVIIIWNPWDNGFMTQDAKNNVIPVS NGDHYQWYSSIYGY A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Staphylococcus sample EXTRACELLULAR 1280 Staphylococcus aureus V-8 1 2.62 53. 6.0 5 M AMMONIUM ACETATE, 2MM DTT, 5MM E-64, 50 MM MES/TRIS BUFFER PH 6.0 5MM E-64 repository Initial release Version format compliance Version format compliance 1 0 1998-10-14 1 1 2008-03-24 1 2 2011-07-13 Y 1998-05-08 REL REL ACT ACETATE ION E64 N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE HOH water ACT 1 2 ACT ACT 175 A E64 175 3 E64 E64 176 A HOH 2 4 HOH HOH 177 A HOH 3 4 HOH HOH 178 A HOH 4 4 HOH HOH 179 A HOH 5 4 HOH HOH 180 A HOH 6 4 HOH HOH 181 A HOH 7 4 HOH HOH 182 A HOH 8 4 HOH HOH 183 A HOH 9 4 HOH HOH 184 A HOH 10 4 HOH HOH 185 A HOH 11 4 HOH HOH 186 A HOH 12 4 HOH HOH 187 A HOH 13 4 HOH HOH 188 A HOH 14 4 HOH HOH 189 A HOH 15 4 HOH HOH 190 A HOH 16 4 HOH HOH 191 A HOH 17 4 HOH HOH 192 A HOH 18 4 HOH HOH 193 A HOH 19 4 HOH HOH 194 A HOH 20 4 HOH HOH 195 A HOH 21 4 HOH HOH 196 A HOH 22 4 HOH HOH 197 A HOH 23 4 HOH HOH 198 A HOH 24 4 HOH HOH 199 A HOH 25 4 HOH HOH 200 A HOH 26 4 HOH HOH 201 A HOH 27 4 HOH HOH 202 A HOH 28 4 HOH HOH 203 A HOH 29 4 HOH HOH 204 A HOH 30 4 HOH HOH 205 A HOH 31 4 HOH HOH 206 A HOH 32 4 HOH HOH 207 A HOH 33 4 HOH HOH 208 A HOH 34 4 HOH HOH 209 A HOH 35 4 HOH HOH 210 A HOH 36 4 HOH HOH 211 A HOH 37 4 HOH HOH 212 A HOH 38 4 HOH HOH 213 A HOH 39 4 HOH HOH 214 A HOH 40 4 HOH HOH 215 A HOH 41 4 HOH HOH 216 A HOH 42 4 HOH HOH 217 A HOH 43 4 HOH HOH 218 A HOH 44 4 HOH HOH 219 A HOH 45 4 HOH HOH 220 A HOH 46 4 HOH HOH 221 A HOH 47 4 HOH HOH 222 A HOH 48 4 HOH HOH 223 A HOH 49 4 HOH HOH 224 A HOH 50 4 HOH HOH 225 A HOH 51 4 HOH HOH 226 A HOH 52 4 HOH HOH 227 A HOH 53 4 HOH HOH 228 A HOH 54 4 HOH HOH 229 A HOH 55 4 HOH HOH 230 A HOH 56 4 HOH HOH 231 A HOH 57 4 HOH HOH 232 A HOH 58 4 HOH HOH 233 A HOH 59 4 HOH HOH 234 A HOH 60 4 HOH HOH 235 A HOH 61 4 HOH HOH 236 A HOH 62 4 HOH HOH 237 A HOH 63 4 HOH HOH 238 A HOH 64 4 HOH HOH 239 A HOH 65 4 HOH HOH 240 A HOH 66 4 HOH HOH 241 A HOH 67 4 HOH HOH 242 A HOH 68 4 HOH HOH 243 A HOH 69 4 HOH HOH 244 A HOH 70 4 HOH HOH 245 A HOH 71 4 HOH HOH 246 A HOH 72 4 HOH HOH 247 A HOH 73 4 HOH HOH 248 A HOH 74 4 HOH HOH 249 A HOH 75 4 HOH HOH 250 A HOH 76 4 HOH HOH 251 A HOH 77 4 HOH HOH 252 A HOH 78 4 HOH HOH 253 A HOH 79 4 HOH HOH 254 A HOH 80 4 HOH HOH 255 A HOH 81 4 HOH HOH 256 A HOH 82 4 HOH HOH 257 A HOH 83 4 HOH HOH 258 A HOH 84 4 HOH HOH 259 A HOH 85 4 HOH HOH 260 A HOH 86 4 HOH HOH 261 A HOH 87 4 HOH HOH 262 A HOH 88 4 HOH HOH 263 A HOH 89 4 HOH HOH 264 A HOH 90 4 HOH HOH 265 A HOH 91 4 HOH HOH 266 A HOH 92 4 HOH HOH 267 A HOH 93 4 HOH HOH 268 A HOH 94 4 HOH HOH 269 A HOH 95 4 HOH HOH 270 A HOH 96 4 HOH HOH 271 A HOH 97 4 HOH HOH 272 A HOH 98 4 HOH HOH 273 A HOH 99 4 HOH HOH 274 A HOH 100 4 HOH HOH 275 A HOH 101 4 HOH HOH 276 A HOH 102 4 HOH HOH 277 A HOH 103 4 HOH HOH 278 A HOH 104 4 HOH HOH 279 A HOH 105 4 HOH HOH 280 A HOH 106 4 HOH HOH 281 A HOH 107 4 HOH HOH 282 A HOH 108 4 HOH HOH 283 A HOH 109 4 HOH HOH 284 A HOH 110 4 HOH HOH 285 A HOH 111 4 HOH HOH 286 A HOH 112 4 HOH HOH 287 A HOH 113 4 HOH HOH 288 A HOH 114 4 HOH HOH 289 A HOH 115 4 HOH HOH 290 A HOH 116 4 HOH HOH 291 A HOH 117 4 HOH HOH 292 A HOH 118 4 HOH HOH 293 A HOH 119 4 HOH HOH 294 A HOH 120 4 HOH HOH 295 A HOH 121 4 HOH HOH 296 A HOH 122 4 HOH HOH 297 A HOH 123 4 HOH HOH 298 A HOH 124 4 HOH HOH 299 A n 1 1 A ASN 2 n 2 ASN 2 A GLU 3 n 3 GLU 3 A GLN 4 n 4 GLN 4 A TYR 5 n 5 TYR 5 A VAL 6 n 6 VAL 6 A ASN 7 n 7 ASN 7 A LYS 8 n 8 LYS 8 A LEU 9 n 9 LEU 9 A GLU 10 n 10 GLU 10 A ASN 11 n 11 ASN 11 A PHE 12 n 12 PHE 12 A LYS 13 n 13 LYS 13 A ILE 14 n 14 ILE 14 A ARG 15 n 15 ARG 15 A GLU 16 n 16 GLU 16 A THR 17 n 17 THR 17 A GLN 18 n 18 GLN 18 A GLY 19 n 19 GLY 19 A ASN 20 n 20 ASN 20 A ASN 21 n 21 ASN 21 A GLY 22 n 22 GLY 22 A TRP 23 n 23 TRP 23 A CYS 24 n 24 CYS 24 A ALA 25 n 25 ALA 25 A GLY 26 n 26 GLY 26 A TYR 27 n 27 TYR 27 A THR 28 n 28 THR 28 A MET 29 n 29 MET 29 A SER 30 n 30 SER 30 A ALA 31 n 31 ALA 31 A LEU 32 n 32 LEU 32 A LEU 33 n 33 LEU 33 A ASN 34 n 34 ASN 34 A ALA 35 n 35 ALA 35 A THR 36 n 36 THR 36 A TYR 37 n 37 TYR 37 A ASN 38 n 38 ASN 38 A THR 39 n 39 THR 39 A ASN 40 n 40 ASN 40 A LYS 41 n 41 LYS 41 A TYR 42 n 42 TYR 42 A HIS 43 n 43 HIS 43 A ALA 44 n 44 ALA 44 A GLU 45 n 45 GLU 45 A ALA 46 n 46 ALA 46 A VAL 47 n 47 VAL 47 A MET 48 n 48 MET 48 A ARG 49 n 49 ARG 49 A PHE 50 n 50 PHE 50 A LEU 51 n 51 LEU 51 A HIS 52 n 52 HIS 52 A PRO 53 n 53 PRO 53 A ASN 54 n 54 ASN 54 A LEU 55 n 55 LEU 55 A GLN 56 n 56 GLN 56 A GLY 57 n 57 GLY 57 A GLN 58 n 58 GLN 58 A GLN 59 n 59 GLN 59 A PHE 60 n 60 PHE 60 A GLN 61 n 61 GLN 61 A PHE 62 n 62 PHE 62 A THR 63 n 63 THR 63 A GLY 64 n 64 GLY 64 A LEU 65 n 65 LEU 65 A THR 66 n 66 THR 66 A PRO 67 n 67 PRO 67 A ARG 68 n 68 ARG 68 A GLU 69 n 69 GLU 69 A MET 70 n 70 MET 70 A ILE 71 n 71 ILE 71 A TYR 72 n 72 TYR 72 A PHE 73 n 73 PHE 73 A GLY 74 n 74 GLY 74 A GLN 75 n 75 GLN 75 A THR 76 n 76 THR 76 A GLN 77 n 77 GLN 77 A GLY 78 n 78 GLY 78 A ARG 79 n 79 ARG 79 A SER 80 n 80 SER 80 A PRO 81 n 81 PRO 81 A GLN 82 n 82 GLN 82 A LEU 83 n 83 LEU 83 A LEU 84 n 84 LEU 84 A ASN 85 n 85 ASN 85 A ARG 86 n 86 ARG 86 A MET 87 n 87 MET 87 A THR 88 n 88 THR 88 A THR 89 n 89 THR 89 A TYR 90 n 90 TYR 90 A ASN 91 n 91 ASN 91 A GLU 92 n 92 GLU 92 A VAL 93 n 93 VAL 93 A ASP 94 n 94 ASP 94 A ASN 95 n 95 ASN 95 A LEU 96 n 96 LEU 96 A THR 97 n 97 THR 97 A LYS 98 n 98 LYS 98 A ASN 99 n 99 ASN 99 A ASN 100 n 100 ASN 100 A LYS 101 n 101 LYS 101 A GLY 102 n 102 GLY 102 A ILE 103 n 103 ILE 103 A ALA 104 n 104 ALA 104 A ILE 105 n 105 ILE 105 A LEU 106 n 106 LEU 106 A GLY 107 n 107 GLY 107 A SER 108 n 108 SER 108 A ARG 109 n 109 ARG 109 A VAL 110 n 110 VAL 110 A GLU 111 n 111 GLU 111 A SER 112 n 112 SER 112 A ARG 113 n 113 ARG 113 A ASN 114 n 114 ASN 114 A GLY 115 n 115 GLY 115 A MET 116 n 116 MET 116 A HIS 117 n 117 HIS 117 A ALA 118 n 118 ALA 118 A GLY 119 n 119 GLY 119 A HIS 120 n 120 HIS 120 A ALA 121 n 121 ALA 121 A MET 122 n 122 MET 122 A ALA 123 n 123 ALA 123 A VAL 124 n 124 VAL 124 A VAL 125 n 125 VAL 125 A GLY 126 n 126 GLY 126 A ASN 127 n 127 ASN 127 A ALA 128 n 128 ALA 128 A LYS 129 n 129 LYS 129 A LEU 130 n 130 LEU 130 A ASN 131 n 131 ASN 131 A ASN 132 n 132 ASN 132 A GLY 133 n 133 GLY 133 A GLN 134 n 134 GLN 134 A GLU 135 n 135 GLU 135 A VAL 136 n 136 VAL 136 A ILE 137 n 137 ILE 137 A ILE 138 n 138 ILE 138 A ILE 139 n 139 ILE 139 A TRP 140 n 140 TRP 140 A ASN 141 n 141 ASN 141 A PRO 142 n 142 PRO 142 A TRP 143 n 143 TRP 143 A ASP 144 n 144 ASP 144 A ASN 145 n 145 ASN 145 A GLY 146 n 146 GLY 146 A PHE 147 n 147 PHE 147 A MET 148 n 148 MET 148 A THR 149 n 149 THR 149 A GLN 150 n 150 GLN 150 A ASP 151 n 151 ASP 151 A ALA 152 n 152 ALA 152 A LYS 153 n 153 LYS 153 A ASN 154 n 154 ASN 154 A ASN 155 n 155 ASN 155 A VAL 156 n 156 VAL 156 A ILE 157 n 157 ILE 157 A PRO 158 n 158 PRO 158 A VAL 159 n 159 VAL 159 A SER 160 n 160 SER 160 A ASN 161 n 161 ASN 161 A GLY 162 n 162 GLY 162 A ASP 163 n 163 ASP 163 A HIS 164 n 164 HIS 164 A TYR 165 n 165 TYR 165 A GLN 166 n 166 GLN 166 A TRP 167 n 167 TRP 167 A TYR 168 n 168 TYR 168 A SER 169 n 169 SER 169 A SER 170 n 170 SER 170 A ILE 171 n 171 ILE 171 A TYR 172 n 172 TYR 172 A GLY 173 n 173 GLY 173 A TYR 174 n 174 TYR 174 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_564 x,x-y+1,-z-1/6 crystal symmetry operation -30.5695000000 52.9479271620 -32.5105000000 A O GLN 82 A O GLN 82 A N TYR 172 A N TYR 172 A O GLN 166 A O GLN 166 A N SER 108 A N SER 108 A O ILE 105 A O ILE 105 A N MET 122 A N MET 122 A O ALA 123 A O ALA 123 A N TRP 140 A N TRP 140 A O ILE 137 A O ILE 137 A N GLN 150 A N GLN 150 A O ILE 157 A O ILE 157 A N TYR 165 A N TYR 165 A O GLN 4 A O GLN 4 A N LYS 129 A N LYS 129 1 A TYR 1 A TYR 1 1 Y 1 A GLY 102 -10.23 1 A ARG 113 11.32 1 3.38 0.50 120.30 123.68 A A A NE CZ NH1 ARG ARG ARG 49 49 49 N 1 -4.17 0.50 120.30 116.13 A A A NE CZ NH2 ARG ARG ARG 49 49 49 N 1 -4.30 0.70 120.80 116.50 A A A CB CG CD1 PHE PHE PHE 73 73 73 N 1 -5.03 0.50 120.30 115.27 A A A NE CZ NH1 ARG ARG ARG 79 79 79 N 1 4.81 0.50 120.30 125.11 A A A NE CZ NH2 ARG ARG ARG 86 86 86 N 1 5.44 0.90 118.30 123.74 A A A CB CG OD1 ASP ASP ASP 94 94 94 N 1 9.88 1.60 122.70 132.58 A A A O C N GLN GLN TRP 166 166 167 Y 1 -5.77 0.90 119.80 114.03 A A A CD1 CE1 CZ TYR TYR TYR 174 174 174 N 1 A ASN 85 -86.98 46.51 1 A ASN 145 -100.14 42.31 20.66 0.2390000 0.2000000 0.1830000 1.75 50.0 981 18172 5. 82.5 RANDOM 1 AT LAST STEPS OF REFINEMENT 0.0 MIR 1.75 50.0 121 1537 29 0 1387 0.021 0.020 0.033 0.040 0.041 0.050 1.9 2.0 2.7 3.0 2.6 2.0 3.9 3.0 0.024 0.030 0.180 0.150 0.179 0.300 0.255 0.300 0.118 0.30 4.5 7.0 15.6 15.0 34.4 20.0 0.0 0.0 16.85 1.72 46.6 1CV8 19765 0.0 0.0620000 1 20.8 2.0 82.3 0.0700000 1.72 1.8 10. 1.5 63.0 model building CCP4 refinement REFMAC data reduction DENZO data scaling SCALEPACK phasing CCP4 STAPHOPAIN, N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE STAPHOPAIN, CYSTEINE PROTEINASE FROM STAPHYLOCOCCUS AUREUS V8 1 N N 2 N N 3 N N 4 N N A CYS 24 A CYS 24 HELX_P A TYR 37 A TYR 37 1 1 14 A ALA 44 A ALA 44 HELX_P A LEU 51 A LEU 51 1 2 8 A GLY 57 A GLY 57 HELX_P A PHE 62 A PHE 62 1 3 6 A PRO 67 A PRO 67 HELX_P A GLN 77 A GLN 77 1 4 11 A TYR 90 A TYR 90 HELX_P A LYS 98 A LYS 98 1 5 9 covale 1.891 A E64 176 C C2 E64 1_555 A CYS 24 A SG CYS 24 1_555 CYSTEINE PROTEASE CYSTEINE PROTEASE, THIOL PROTEASE, PAPAIN FAMILY SSPP_STAAU UNP 1 1 P81297 YNEQYVNKLENFKIRETQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFTGLTPREMIYFGQTQGRS PQLLNRMTTYNEVDNLTKNNKGIAILGSRVESRNGMHAGHAMAVVGNAKLNNGQEVIIIWNPWDNGFMTQDAKNNVIPVS NGDHYQWYSSIYGY 1 174 1CV8 1 174 P81297 A 1 1 174 6 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 82 A GLN 82 A LEU 84 A LEU 84 A TYR 165 A TYR 165 A TYR 172 A TYR 172 A ILE 103 A ILE 103 A ARG 109 A ARG 109 A GLY 119 A GLY 119 A LYS 129 A LYS 129 A GLU 135 A GLU 135 A TRP 140 A TRP 140 A MET 148 A MET 148 A ASP 151 A ASP 151 A VAL 156 A VAL 156 A PRO 158 A PRO 158 A HIS 164 A HIS 164 A GLN 166 A GLN 166 A GLU 3 A GLU 3 A LYS 8 A LYS 8 A GLY 126 A GLY 126 A LEU 130 A LEU 130 CATALYTIC TRIAD. Unknown 3 BINDING SITE FOR RESIDUE ACT A 175 Software 5 BINDING SITE FOR RESIDUE E64 A 176 Software 16 A CYS 24 A CYS 24 3 1_555 A HIS 120 A HIS 120 3 1_555 A ASN 141 A ASN 141 3 1_555 A LYS 13 A LYS 13 5 1_555 A ILE 14 A ILE 14 5 12_564 A ARG 15 A ARG 15 5 1_555 A ASN 40 A ASN 40 5 1_555 A ASN 145 A ASN 145 5 12_564 A GLN 18 A GLN 18 16 1_555 A GLY 22 A GLY 22 16 1_555 A TRP 23 A TRP 23 16 1_555 A CYS 24 A CYS 24 16 1_555 A HIS 52 A HIS 52 16 1_555 A THR 63 A THR 63 16 1_555 A GLY 64 A GLY 64 16 1_555 A LEU 65 A LEU 65 16 1_555 A GLU 69 A GLU 69 16 1_555 A GLY 119 A GLY 119 16 1_555 A HIS 120 A HIS 120 16 1_555 A HOH 184 D HOH 16 1_555 A HOH 233 D HOH 16 1_555 A HOH 267 D HOH 16 1_555 A HOH 274 D HOH 16 1_555 A HOH 288 D HOH 16 1_555 179 P 65 2 2