0.019257
0.000000
0.000000
0.000000
0.012513
0.000000
0.000000
0.000000
0.010018
0.00000
0.00000
0.00000
Eichinger, A.
Beisel, H.-G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
51.930
79.920
99.820
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C25 H33 Cl N6 O3
501.021
D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-phenylalaninamide
FFRCK
peptide-like
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
EMBO J.
EMJODG
0897
0261-4189
18
5453
5462
10.1093/emboj/18.20.5453
10523290
Crystal structure of gingipain R: an Arg-specific bacterial cysteine proteinase with a caspase-like fold.
1999
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
289
1
IMAGE PLATE
1997-09-02
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
47932.828
GINGIPAIN R
3.4.22.37
1
man
polymer
501.021
D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-phenylalaninamide
1
syn
non-polymer
40.078
CALCIUM ION
6
syn
non-polymer
65.409
ZINC ION
2
syn
non-polymer
18.015
water
322
nat
water
RGPB
no
no
YTPVEEKENGRMIVIVAKKYEGDIKDFVDWKNQRGLRTEVKVAEDIASPVTANAIQQFVKQEYEKEGNDLTYVLLVGDHK
DIPAKITPGIKSDQVYGQIVGNDHYNEVFIGRFSCESKEDLKTQIDRTIHYERNITTEDKWLGQALCIASAEGGPSADNG
ESDIQHENVIANLLTQYGYTKIIKCYDPGVTPKNIIDAFNGGISLVNYTGHGSETAWGTSHFGTTHVKQLTNSNQLPFIF
DVACVNGDFLFSMPCFAEALMRAQKDGKPTGTVAIIASTIDQYWAPPMRGQDEMNEILCEKHPNNIKRTFGGVTMNGMFA
MVEKYKKDGENMLDTWTVFGDPSLLVRTLVPTEMQVTAPANISASAQTFEVACDYNGAIATLSDDGDMVGTAIVKDGKAI
IKLNESIADETNLTLTVVGYNKVTVIKDVKVEGTS
YTPVEEKENGRMIVIVAKKYEGDIKDFVDWKNQRGLRTEVKVAEDIASPVTANAIQQFVKQEYEKEGNDLTYVLLVGDHK
DIPAKITPGIKSDQVYGQIVGNDHYNEVFIGRFSCESKEDLKTQIDRTIHYERNITTEDKWLGQALCIASAEGGPSADNG
ESDIQHENVIANLLTQYGYTKIIKCYDPGVTPKNIIDAFNGGISLVNYTGHGSETAWGTSHFGTTHVKQLTNSNQLPFIF
DVACVNGDFLFSMPCFAEALMRAQKDGKPTGTVAIIASTIDQYWAPPMRGQDEMNEILCEKHPNNIKRTFGGVTMNGMFA
MVEKYKKDGENMLDTWTVFGDPSLLVRTLVPTEMQVTAPANISASAQTFEVACDYNGAIATLSDDGDMVGTAIVKDGKAI
IKLNESIADETNLTLTVVGYNKVTVIKDVKVEGTS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
837
Porphyromonas gingivalis
1
2.14
42.46
VAPOR DIFFUSION, HANGING DROP
6.0
15 % PEG 8000 100 MM ZINC ACETATE 100 MM SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
repository
Initial release
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
Non-polymer description
Derived calculations
Non-polymer description
1
0
2000-03-01
1
1
2008-04-27
1
2
2011-07-13
1
3
2013-09-11
1
4
2013-10-16
RCSB
Y
RCSB
1999-08-24
REL
REL
H37
D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-phenylalaninamide
CA
CALCIUM ION
ZN
ZINC ION
HOH
water
Inhibitor
D-PHENYLALANYL-N-[(3S)-6-CARBAMIMIDAMIDO-1-CHLORO-2-OXOHEXAN-3-YL]-L-PHENYLALANINAMIDE
Peptide-like
INH
436
2
H37
H37
501
A
KAL
648
3
CA
CA
502
A
KAL
501
3
CA
CA
503
A
KAL
477
3
CA
CA
504
A
KAL
686
3
CA
CA
505
A
KAL
678
3
CA
CA
506
A
ZIN
731
4
ZN
ZN
507
A
KAL
723
3
CA
CA
508
A
ZIN
673
4
ZN
ZN
509
A
WAT
437
5
HOH
HOH
601
A
WAT
438
5
HOH
HOH
602
A
WAT
439
5
HOH
HOH
603
A
WAT
440
5
HOH
HOH
604
A
WAT
441
5
HOH
HOH
605
A
WAT
442
5
HOH
HOH
606
A
WAT
443
5
HOH
HOH
607
A
WAT
444
5
HOH
HOH
608
A
WAT
445
5
HOH
HOH
609
A
WAT
446
5
HOH
HOH
610
A
WAT
447
5
HOH
HOH
611
A
WAT
448
5
HOH
HOH
612
A
WAT
449
5
HOH
HOH
613
A
WAT
450
5
HOH
HOH
614
A
WAT
451
5
HOH
HOH
615
A
WAT
452
5
HOH
HOH
616
A
WAT
453
5
HOH
HOH
617
A
WAT
454
5
HOH
HOH
618
A
WAT
455
5
HOH
HOH
619
A
WAT
456
5
HOH
HOH
620
A
WAT
457
5
HOH
HOH
621
A
WAT
458
5
HOH
HOH
622
A
WAT
459
5
HOH
HOH
623
A
WAT
460
5
HOH
HOH
624
A
WAT
461
5
HOH
HOH
625
A
WAT
462
5
HOH
HOH
626
A
WAT
463
5
HOH
HOH
627
A
WAT
464
5
HOH
HOH
628
A
WAT
465
5
HOH
HOH
629
A
WAT
466
5
HOH
HOH
630
A
WAT
468
5
HOH
HOH
631
A
WAT
469
5
HOH
HOH
632
A
WAT
470
5
HOH
HOH
633
A
WAT
471
5
HOH
HOH
634
A
WAT
472
5
HOH
HOH
635
A
WAT
473
5
HOH
HOH
636
A
WAT
474
5
HOH
HOH
637
A
WAT
475
5
HOH
HOH
638
A
WAT
476
5
HOH
HOH
639
A
WAT
478
5
HOH
HOH
640
A
WAT
479
5
HOH
HOH
641
A
WAT
480
5
HOH
HOH
642
A
WAT
481
5
HOH
HOH
643
A
WAT
482
5
HOH
HOH
644
A
WAT
483
5
HOH
HOH
645
A
WAT
484
5
HOH
HOH
646
A
WAT
485
5
HOH
HOH
647
A
WAT
486
5
HOH
HOH
648
A
WAT
487
5
HOH
HOH
649
A
WAT
488
5
HOH
HOH
650
A
WAT
489
5
HOH
HOH
651
A
WAT
490
5
HOH
HOH
652
A
WAT
491
5
HOH
HOH
653
A
WAT
492
5
HOH
HOH
654
A
WAT
493
5
HOH
HOH
655
A
WAT
494
5
HOH
HOH
656
A
WAT
495
5
HOH
HOH
657
A
WAT
496
5
HOH
HOH
658
A
WAT
497
5
HOH
HOH
659
A
WAT
498
5
HOH
HOH
660
A
WAT
499
5
HOH
HOH
661
A
WAT
500
5
HOH
HOH
662
A
WAT
503
5
HOH
HOH
663
A
WAT
504
5
HOH
HOH
664
A
WAT
505
5
HOH
HOH
665
A
WAT
506
5
HOH
HOH
666
A
WAT
507
5
HOH
HOH
667
A
WAT
508
5
HOH
HOH
668
A
WAT
509
5
HOH
HOH
669
A
WAT
510
5
HOH
HOH
670
A
WAT
511
5
HOH
HOH
671
A
WAT
512
5
HOH
HOH
672
A
WAT
513
5
HOH
HOH
673
A
WAT
514
5
HOH
HOH
674
A
WAT
515
5
HOH
HOH
675
A
WAT
516
5
HOH
HOH
676
A
WAT
517
5
HOH
HOH
677
A
WAT
518
5
HOH
HOH
678
A
WAT
519
5
HOH
HOH
679
A
WAT
520
5
HOH
HOH
680
A
WAT
521
5
HOH
HOH
681
A
WAT
522
5
HOH
HOH
682
A
WAT
523
5
HOH
HOH
683
A
WAT
524
5
HOH
HOH
684
A
WAT
525
5
HOH
HOH
685
A
WAT
526
5
HOH
HOH
686
A
WAT
527
5
HOH
HOH
687
A
WAT
528
5
HOH
HOH
688
A
WAT
529
5
HOH
HOH
689
A
WAT
530
5
HOH
HOH
690
A
WAT
531
5
HOH
HOH
691
A
WAT
532
5
HOH
HOH
692
A
WAT
533
5
HOH
HOH
693
A
WAT
534
5
HOH
HOH
694
A
WAT
535
5
HOH
HOH
695
A
WAT
536
5
HOH
HOH
696
A
WAT
537
5
HOH
HOH
697
A
WAT
538
5
HOH
HOH
698
A
WAT
539
5
HOH
HOH
699
A
WAT
540
5
HOH
HOH
700
A
WAT
541
5
HOH
HOH
701
A
WAT
542
5
HOH
HOH
702
A
WAT
543
5
HOH
HOH
703
A
WAT
544
5
HOH
HOH
704
A
WAT
545
5
HOH
HOH
705
A
WAT
546
5
HOH
HOH
706
A
WAT
547
5
HOH
HOH
707
A
WAT
548
5
HOH
HOH
708
A
WAT
549
5
HOH
HOH
709
A
WAT
550
5
HOH
HOH
710
A
WAT
551
5
HOH
HOH
711
A
WAT
552
5
HOH
HOH
712
A
WAT
553
5
HOH
HOH
713
A
WAT
554
5
HOH
HOH
714
A
WAT
555
5
HOH
HOH
715
A
WAT
556
5
HOH
HOH
716
A
WAT
557
5
HOH
HOH
717
A
WAT
558
5
HOH
HOH
718
A
WAT
559
5
HOH
HOH
719
A
WAT
560
5
HOH
HOH
720
A
WAT
561
5
HOH
HOH
721
A
WAT
562
5
HOH
HOH
722
A
WAT
563
5
HOH
HOH
723
A
WAT
564
5
HOH
HOH
724
A
WAT
565
5
HOH
HOH
725
A
WAT
566
5
HOH
HOH
726
A
WAT
567
5
HOH
HOH
727
A
WAT
568
5
HOH
HOH
728
A
WAT
569
5
HOH
HOH
729
A
WAT
570
5
HOH
HOH
730
A
WAT
572
5
HOH
HOH
731
A
WAT
573
5
HOH
HOH
732
A
WAT
574
5
HOH
HOH
733
A
WAT
576
5
HOH
HOH
734
A
WAT
577
5
HOH
HOH
735
A
WAT
578
5
HOH
HOH
736
A
WAT
579
5
HOH
HOH
737
A
WAT
580
5
HOH
HOH
738
A
WAT
581
5
HOH
HOH
739
A
WAT
582
5
HOH
HOH
740
A
WAT
583
5
HOH
HOH
741
A
WAT
584
5
HOH
HOH
742
A
WAT
585
5
HOH
HOH
743
A
WAT
586
5
HOH
HOH
744
A
WAT
587
5
HOH
HOH
745
A
WAT
588
5
HOH
HOH
746
A
WAT
589
5
HOH
HOH
747
A
WAT
590
5
HOH
HOH
748
A
WAT
591
5
HOH
HOH
749
A
WAT
592
5
HOH
HOH
750
A
WAT
593
5
HOH
HOH
751
A
WAT
594
5
HOH
HOH
752
A
WAT
595
5
HOH
HOH
753
A
WAT
596
5
HOH
HOH
754
A
WAT
597
5
HOH
HOH
755
A
WAT
598
5
HOH
HOH
756
A
WAT
599
5
HOH
HOH
757
A
WAT
600
5
HOH
HOH
758
A
WAT
601
5
HOH
HOH
759
A
WAT
602
5
HOH
HOH
760
A
WAT
603
5
HOH
HOH
761
A
WAT
604
5
HOH
HOH
762
A
WAT
605
5
HOH
HOH
763
A
WAT
606
5
HOH
HOH
764
A
WAT
607
5
HOH
HOH
765
A
WAT
608
5
HOH
HOH
766
A
WAT
609
5
HOH
HOH
767
A
WAT
610
5
HOH
HOH
768
A
WAT
611
5
HOH
HOH
769
A
WAT
612
5
HOH
HOH
770
A
WAT
613
5
HOH
HOH
771
A
WAT
614
5
HOH
HOH
772
A
WAT
615
5
HOH
HOH
773
A
WAT
616
5
HOH
HOH
774
A
WAT
617
5
HOH
HOH
775
A
WAT
618
5
HOH
HOH
776
A
WAT
619
5
HOH
HOH
777
A
WAT
620
5
HOH
HOH
778
A
WAT
621
5
HOH
HOH
779
A
WAT
622
5
HOH
HOH
780
A
WAT
623
5
HOH
HOH
781
A
WAT
624
5
HOH
HOH
782
A
WAT
625
5
HOH
HOH
783
A
WAT
626
5
HOH
HOH
784
A
WAT
627
5
HOH
HOH
785
A
WAT
628
5
HOH
HOH
786
A
WAT
629
5
HOH
HOH
787
A
WAT
630
5
HOH
HOH
788
A
WAT
631
5
HOH
HOH
789
A
WAT
632
5
HOH
HOH
790
A
WAT
633
5
HOH
HOH
791
A
WAT
634
5
HOH
HOH
792
A
WAT
635
5
HOH
HOH
793
A
WAT
636
5
HOH
HOH
794
A
WAT
638
5
HOH
HOH
795
A
WAT
639
5
HOH
HOH
796
A
WAT
640
5
HOH
HOH
797
A
WAT
641
5
HOH
HOH
798
A
WAT
642
5
HOH
HOH
799
A
WAT
643
5
HOH
HOH
800
A
WAT
645
5
HOH
HOH
801
A
WAT
646
5
HOH
HOH
802
A
WAT
647
5
HOH
HOH
803
A
WAT
651
5
HOH
HOH
804
A
WAT
653
5
HOH
HOH
805
A
WAT
654
5
HOH
HOH
806
A
WAT
655
5
HOH
HOH
807
A
WAT
656
5
HOH
HOH
808
A
WAT
658
5
HOH
HOH
809
A
WAT
659
5
HOH
HOH
810
A
WAT
660
5
HOH
HOH
811
A
WAT
661
5
HOH
HOH
812
A
WAT
662
5
HOH
HOH
813
A
WAT
663
5
HOH
HOH
814
A
WAT
664
5
HOH
HOH
815
A
WAT
668
5
HOH
HOH
816
A
WAT
669
5
HOH
HOH
817
A
WAT
670
5
HOH
HOH
818
A
WAT
671
5
HOH
HOH
819
A
WAT
672
5
HOH
HOH
820
A
WAT
674
5
HOH
HOH
821
A
WAT
675
5
HOH
HOH
822
A
WAT
676
5
HOH
HOH
823
A
WAT
677
5
HOH
HOH
824
A
WAT
679
5
HOH
HOH
825
A
WAT
680
5
HOH
HOH
826
A
WAT
681
5
HOH
HOH
827
A
WAT
682
5
HOH
HOH
828
A
WAT
683
5
HOH
HOH
829
A
WAT
684
5
HOH
HOH
830
A
WAT
687
5
HOH
HOH
831
A
WAT
688
5
HOH
HOH
832
A
WAT
689
5
HOH
HOH
833
A
WAT
690
5
HOH
HOH
834
A
WAT
691
5
HOH
HOH
835
A
WAT
692
5
HOH
HOH
836
A
WAT
693
5
HOH
HOH
837
A
WAT
694
5
HOH
HOH
838
A
WAT
695
5
HOH
HOH
839
A
WAT
696
5
HOH
HOH
840
A
WAT
697
5
HOH
HOH
841
A
WAT
698
5
HOH
HOH
842
A
WAT
699
5
HOH
HOH
843
A
WAT
700
5
HOH
HOH
844
A
WAT
701
5
HOH
HOH
845
A
WAT
702
5
HOH
HOH
846
A
WAT
703
5
HOH
HOH
847
A
WAT
704
5
HOH
HOH
848
A
WAT
705
5
HOH
HOH
849
A
WAT
706
5
HOH
HOH
850
A
WAT
707
5
HOH
HOH
851
A
WAT
708
5
HOH
HOH
852
A
WAT
709
5
HOH
HOH
853
A
WAT
710
5
HOH
HOH
854
A
WAT
711
5
HOH
HOH
855
A
WAT
712
5
HOH
HOH
856
A
WAT
713
5
HOH
HOH
857
A
WAT
714
5
HOH
HOH
858
A
WAT
715
5
HOH
HOH
859
A
WAT
716
5
HOH
HOH
860
A
WAT
717
5
HOH
HOH
861
A
WAT
718
5
HOH
HOH
862
A
WAT
719
5
HOH
HOH
863
A
WAT
720
5
HOH
HOH
864
A
WAT
721
5
HOH
HOH
865
A
WAT
722
5
HOH
HOH
866
A
WAT
724
5
HOH
HOH
867
A
WAT
725
5
HOH
HOH
868
A
WAT
726
5
HOH
HOH
869
A
WAT
727
5
HOH
HOH
870
A
WAT
728
5
HOH
HOH
871
A
WAT
729
5
HOH
HOH
872
A
WAT
730
5
HOH
HOH
873
A
WAT
732
5
HOH
HOH
874
A
WAT
733
5
HOH
HOH
875
A
WAT
734
5
HOH
HOH
876
A
WAT
735
5
HOH
HOH
877
A
WAT
736
5
HOH
HOH
878
A
WAT
737
5
HOH
HOH
879
A
WAT
738
5
HOH
HOH
880
A
WAT
739
5
HOH
HOH
881
A
WAT
740
5
HOH
HOH
882
A
WAT
741
5
HOH
HOH
883
A
WAT
742
5
HOH
HOH
884
A
WAT
743
5
HOH
HOH
885
A
WAT
744
5
HOH
HOH
886
A
WAT
745
5
HOH
HOH
887
A
WAT
746
5
HOH
HOH
888
A
WAT
747
5
HOH
HOH
889
A
WAT
748
5
HOH
HOH
890
A
WAT
749
5
HOH
HOH
891
A
WAT
750
5
HOH
HOH
892
A
WAT
751
5
HOH
HOH
893
A
WAT
752
5
HOH
HOH
894
A
WAT
753
5
HOH
HOH
895
A
WAT
754
5
HOH
HOH
896
A
WAT
755
5
HOH
HOH
897
A
WAT
756
5
HOH
HOH
898
A
WAT
757
5
HOH
HOH
899
A
WAT
758
5
HOH
HOH
900
A
WAT
759
5
HOH
HOH
901
A
WAT
760
5
HOH
HOH
902
A
WAT
761
5
HOH
HOH
903
A
WAT
762
5
HOH
HOH
904
A
WAT
763
5
HOH
HOH
905
A
WAT
764
5
HOH
HOH
906
A
WAT
765
5
HOH
HOH
907
A
WAT
766
5
HOH
HOH
908
A
WAT
767
5
HOH
HOH
909
A
WAT
768
5
HOH
HOH
910
A
WAT
769
5
HOH
HOH
911
A
WAT
770
5
HOH
HOH
912
A
WAT
771
5
HOH
HOH
913
A
WAT
772
5
HOH
HOH
914
A
WAT
773
5
HOH
HOH
915
A
WAT
774
5
HOH
HOH
916
A
WAT
775
5
HOH
HOH
917
A
WAT
776
5
HOH
HOH
918
A
WAT
777
5
HOH
HOH
919
A
WAT
778
5
HOH
HOH
920
A
WAT
779
5
HOH
HOH
921
A
WAT
780
5
HOH
HOH
922
A
TYR
1
n
1
TYR
1
A
THR
2
n
2
THR
2
A
PRO
3
n
3
PRO
3
A
VAL
4
n
4
VAL
4
A
GLU
5
n
5
GLU
5
A
GLU
6
n
6
GLU
6
A
LYS
7
n
7
LYS
7
A
GLU
8
n
8
GLU
8
A
ASN
9
n
9
ASN
9
A
GLY
10
n
10
GLY
10
A
ARG
11
n
11
ARG
11
A
MET
12
n
12
MET
12
A
ILE
13
n
13
ILE
13
A
VAL
14
n
14
VAL
14
A
ILE
15
n
15
ILE
15
A
VAL
16
n
16
VAL
16
A
ALA
17
n
17
ALA
17
A
LYS
18
n
18
LYS
18
A
LYS
19
n
19
LYS
19
A
TYR
20
n
20
TYR
20
A
GLU
21
n
21
GLU
21
A
GLY
22
n
22
GLY
22
A
ASP
23
n
23
ASP
23
A
ILE
24
n
24
ILE
24
A
LYS
25
n
25
LYS
25
A
ASP
26
n
26
ASP
26
A
PHE
27
n
27
PHE
27
A
VAL
28
n
28
VAL
28
A
ASP
29
n
29
ASP
29
A
TRP
30
n
30
TRP
30
A
LYS
31
n
31
LYS
31
A
ASN
32
n
32
ASN
32
A
GLN
33
n
33
GLN
33
A
ARG
34
n
34
ARG
34
A
GLY
35
n
35
GLY
35
A
LEU
36
n
36
LEU
36
A
ARG
37
n
37
ARG
37
A
THR
38
n
38
THR
38
A
GLU
39
n
39
GLU
39
A
VAL
40
n
40
VAL
40
A
LYS
41
n
41
LYS
41
A
VAL
42
n
42
VAL
42
A
ALA
43
n
43
ALA
43
A
GLU
44
n
44
GLU
44
A
ASP
45
n
45
ASP
45
A
ILE
46
n
46
ILE
46
A
ALA
47
n
47
ALA
47
A
SER
48
n
48
SER
48
A
PRO
49
n
49
PRO
49
A
VAL
50
n
50
VAL
50
A
THR
51
n
51
THR
51
A
ALA
52
n
52
ALA
52
A
ASN
53
n
53
ASN
53
A
ALA
54
n
54
ALA
54
A
ILE
55
n
55
ILE
55
A
GLN
56
n
56
GLN
56
A
GLN
57
n
57
GLN
57
A
PHE
58
n
58
PHE
58
A
VAL
59
n
59
VAL
59
A
LYS
60
n
60
LYS
60
A
GLN
61
n
61
GLN
61
A
GLU
62
n
62
GLU
62
A
TYR
63
n
63
TYR
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
GLU
66
n
66
GLU
66
A
GLY
67
n
67
GLY
67
A
ASN
68
n
68
ASN
68
A
ASP
69
n
69
ASP
69
A
LEU
70
n
70
LEU
70
A
THR
71
n
71
THR
71
A
TYR
72
n
72
TYR
72
A
VAL
73
n
73
VAL
73
A
LEU
74
n
74
LEU
74
A
LEU
75
n
75
LEU
75
A
VAL
76
n
76
VAL
76
A
GLY
77
n
77
GLY
77
A
ASP
78
n
78
ASP
78
A
HIS
79
n
79
HIS
79
A
LYS
80
n
80
LYS
80
A
ASP
81
n
81
ASP
81
A
ILE
82
n
82
ILE
82
A
PRO
83
n
83
PRO
83
A
ALA
84
n
84
ALA
84
A
LYS
85
n
85
LYS
85
A
ILE
86
n
86
ILE
86
A
THR
87
n
87
THR
87
A
PRO
88
n
88
PRO
88
A
GLY
89
n
89
GLY
89
A
ILE
90
n
90
ILE
90
A
LYS
91
n
91
LYS
91
A
SER
92
n
92
SER
92
A
ASP
93
n
93
ASP
93
A
GLN
94
n
94
GLN
94
A
VAL
95
n
95
VAL
95
A
TYR
96
n
96
TYR
96
A
GLY
97
n
97
GLY
97
A
GLN
98
n
98
GLN
98
A
ILE
99
n
99
ILE
99
A
VAL
100
n
100
VAL
100
A
GLY
101
n
101
GLY
101
A
ASN
102
n
102
ASN
102
A
ASP
103
n
103
ASP
103
A
HIS
104
n
104
HIS
104
A
TYR
105
n
105
TYR
105
A
ASN
106
n
106
ASN
106
A
GLU
107
n
107
GLU
107
A
VAL
108
n
108
VAL
108
A
PHE
109
n
109
PHE
109
A
ILE
110
n
110
ILE
110
A
GLY
111
n
111
GLY
111
A
ARG
112
n
112
ARG
112
A
PHE
113
n
113
PHE
113
A
SER
114
n
114
SER
114
A
CYS
115
n
115
CYS
115
A
GLU
116
n
116
GLU
116
A
SER
117
n
117
SER
117
A
LYS
118
n
118
LYS
118
A
GLU
119
n
119
GLU
119
A
ASP
120
n
120
ASP
120
A
LEU
121
n
121
LEU
121
A
LYS
122
n
122
LYS
122
A
THR
123
n
123
THR
123
A
GLN
124
n
124
GLN
124
A
ILE
125
n
125
ILE
125
A
ASP
126
n
126
ASP
126
A
ARG
127
n
127
ARG
127
A
THR
128
n
128
THR
128
A
ILE
129
n
129
ILE
129
A
HIS
130
n
130
HIS
130
A
TYR
131
n
131
TYR
131
A
GLU
132
n
132
GLU
132
A
ARG
133
n
133
ARG
133
A
ASN
134
n
134
ASN
134
A
ILE
135
n
135
ILE
135
A
THR
136
n
136
THR
136
A
THR
137
n
137
THR
137
A
GLU
138
n
138
GLU
138
A
ASP
139
n
139
ASP
139
A
LYS
140
n
140
LYS
140
A
TRP
141
n
141
TRP
141
A
LEU
142
n
142
LEU
142
A
GLY
143
n
143
GLY
143
A
GLN
144
n
144
GLN
144
A
ALA
145
n
145
ALA
145
A
LEU
146
n
146
LEU
146
A
CYS
147
n
147
CYS
147
A
ILE
148
n
148
ILE
148
A
ALA
149
n
149
ALA
149
A
SER
150
n
150
SER
150
A
ALA
151
n
151
ALA
151
A
GLU
152
n
152
GLU
152
A
GLY
153
n
153
GLY
153
A
GLY
154
n
154
GLY
154
A
PRO
155
n
155
PRO
155
A
SER
156
n
156
SER
156
A
ALA
157
n
157
ALA
157
A
ASP
158
n
158
ASP
158
A
ASN
159
n
159
ASN
159
A
GLY
160
n
160
GLY
160
A
GLU
161
n
161
GLU
161
A
SER
162
n
162
SER
162
A
ASP
163
n
163
ASP
163
A
ILE
164
n
164
ILE
164
A
GLN
165
n
165
GLN
165
A
HIS
166
n
166
HIS
166
A
GLU
167
n
167
GLU
167
A
ASN
168
n
168
ASN
168
A
VAL
169
n
169
VAL
169
A
ILE
170
n
170
ILE
170
A
ALA
171
n
171
ALA
171
A
ASN
172
n
172
ASN
172
A
LEU
173
n
173
LEU
173
A
LEU
174
n
174
LEU
174
A
THR
175
n
175
THR
175
A
GLN
176
n
176
GLN
176
A
TYR
177
n
177
TYR
177
A
GLY
178
n
178
GLY
178
A
TYR
179
n
179
TYR
179
A
THR
180
n
180
THR
180
A
LYS
181
n
181
LYS
181
A
ILE
182
n
182
ILE
182
A
ILE
183
n
183
ILE
183
A
LYS
184
n
184
LYS
184
A
CYS
185
n
185
CYS
185
A
TYR
186
n
186
TYR
186
A
ASP
187
n
187
ASP
187
A
PRO
188
n
188
PRO
188
A
GLY
189
n
189
GLY
189
A
VAL
190
n
190
VAL
190
A
THR
191
n
191
THR
191
A
PRO
192
n
192
PRO
192
A
LYS
193
n
193
LYS
193
A
ASN
194
n
194
ASN
194
A
ILE
195
n
195
ILE
195
A
ILE
196
n
196
ILE
196
A
ASP
197
n
197
ASP
197
A
ALA
198
n
198
ALA
198
A
PHE
199
n
199
PHE
199
A
ASN
200
n
200
ASN
200
A
GLY
201
n
201
GLY
201
A
GLY
202
n
202
GLY
202
A
ILE
203
n
203
ILE
203
A
SER
204
n
204
SER
204
A
LEU
205
n
205
LEU
205
A
VAL
206
n
206
VAL
206
A
ASN
207
n
207
ASN
207
A
TYR
208
n
208
TYR
208
A
THR
209
n
209
THR
209
A
GLY
210
n
210
GLY
210
A
HIS
211
n
211
HIS
211
A
GLY
212
n
212
GLY
212
A
SER
213
n
213
SER
213
A
GLU
214
n
214
GLU
214
A
THR
215
n
215
THR
215
A
ALA
216
n
216
ALA
216
A
TRP
217
n
217
TRP
217
A
GLY
218
n
218
GLY
218
A
THR
219
n
219
THR
219
A
SER
220
n
220
SER
220
A
HIS
221
n
221
HIS
221
A
PHE
222
n
222
PHE
222
A
GLY
223
n
223
GLY
223
A
THR
224
n
224
THR
224
A
THR
225
n
225
THR
225
A
HIS
226
n
226
HIS
226
A
VAL
227
n
227
VAL
227
A
LYS
228
n
228
LYS
228
A
GLN
229
n
229
GLN
229
A
LEU
230
n
230
LEU
230
A
THR
231
n
231
THR
231
A
ASN
232
n
232
ASN
232
A
SER
233
n
233
SER
233
A
ASN
234
n
234
ASN
234
A
GLN
235
n
235
GLN
235
A
LEU
236
n
236
LEU
236
A
PRO
237
n
237
PRO
237
A
PHE
238
n
238
PHE
238
A
ILE
239
n
239
ILE
239
A
PHE
240
n
240
PHE
240
A
ASP
241
n
241
ASP
241
A
VAL
242
n
242
VAL
242
A
ALA
243
n
243
ALA
243
A
CYS
244
n
244
CYS
244
A
VAL
245
n
245
VAL
245
A
ASN
246
n
246
ASN
246
A
GLY
247
n
247
GLY
247
A
ASP
248
n
248
ASP
248
A
PHE
249
n
249
PHE
249
A
LEU
250
n
250
LEU
250
A
PHE
251
n
251
PHE
251
A
SER
252
n
252
SER
252
A
MET
253
n
253
MET
253
A
PRO
254
n
254
PRO
254
A
CYS
255
n
255
CYS
255
A
PHE
256
n
256
PHE
256
A
ALA
257
n
257
ALA
257
A
GLU
258
n
258
GLU
258
A
ALA
259
n
259
ALA
259
A
LEU
260
n
260
LEU
260
A
MET
261
n
261
MET
261
A
ARG
262
n
262
ARG
262
A
ALA
263
n
263
ALA
263
A
GLN
264
n
264
GLN
264
A
LYS
265
n
265
LYS
265
A
ASP
266
n
266
ASP
266
A
GLY
267
n
267
GLY
267
A
LYS
268
n
268
LYS
268
A
PRO
269
n
269
PRO
269
A
THR
270
n
270
THR
270
A
GLY
271
n
271
GLY
271
A
THR
272
n
272
THR
272
A
VAL
273
n
273
VAL
273
A
ALA
274
n
274
ALA
274
A
ILE
275
n
275
ILE
275
A
ILE
276
n
276
ILE
276
A
ALA
277
n
277
ALA
277
A
SER
278
n
278
SER
278
A
THR
279
n
279
THR
279
A
ILE
280
n
280
ILE
280
A
ASP
281
n
281
ASP
281
A
GLN
282
n
282
GLN
282
A
TYR
283
n
283
TYR
283
A
TRP
284
n
284
TRP
284
A
ALA
285
n
285
ALA
285
A
PRO
286
n
286
PRO
286
A
PRO
287
n
287
PRO
287
A
MET
288
n
288
MET
288
A
ARG
289
n
289
ARG
289
A
GLY
290
n
290
GLY
290
A
GLN
291
n
291
GLN
291
A
ASP
292
n
292
ASP
292
A
GLU
293
n
293
GLU
293
A
MET
294
n
294
MET
294
A
ASN
295
n
295
ASN
295
A
GLU
296
n
296
GLU
296
A
ILE
297
n
297
ILE
297
A
LEU
298
n
298
LEU
298
A
CYS
299
n
299
CYS
299
A
GLU
300
n
300
GLU
300
A
LYS
301
n
301
LYS
301
A
HIS
302
n
302
HIS
302
A
PRO
303
n
303
PRO
303
A
ASN
304
n
304
ASN
304
A
ASN
305
n
305
ASN
305
A
ILE
306
n
306
ILE
306
A
LYS
307
n
307
LYS
307
A
ARG
308
n
308
ARG
308
A
THR
309
n
309
THR
309
A
PHE
310
n
310
PHE
310
A
GLY
311
n
311
GLY
311
A
GLY
312
n
312
GLY
312
A
VAL
313
n
313
VAL
313
A
THR
314
n
314
THR
314
A
MET
315
n
315
MET
315
A
ASN
316
n
316
ASN
316
A
GLY
317
n
317
GLY
317
A
MET
318
n
318
MET
318
A
PHE
319
n
319
PHE
319
A
ALA
320
n
320
ALA
320
A
MET
321
n
321
MET
321
A
VAL
322
n
322
VAL
322
A
GLU
323
n
323
GLU
323
A
LYS
324
n
324
LYS
324
A
TYR
325
n
325
TYR
325
A
LYS
326
n
326
LYS
326
A
LYS
327
n
327
LYS
327
A
ASP
328
n
328
ASP
328
A
GLY
329
n
329
GLY
329
A
GLU
330
n
330
GLU
330
A
ASN
331
n
331
ASN
331
A
MET
332
n
332
MET
332
A
LEU
333
n
333
LEU
333
A
ASP
334
n
334
ASP
334
A
THR
335
n
335
THR
335
A
TRP
336
n
336
TRP
336
A
THR
337
n
337
THR
337
A
VAL
338
n
338
VAL
338
A
PHE
339
n
339
PHE
339
A
GLY
340
n
340
GLY
340
A
ASP
341
n
341
ASP
341
A
PRO
342
n
342
PRO
342
A
SER
343
n
343
SER
343
A
LEU
344
n
344
LEU
344
A
LEU
345
n
345
LEU
345
A
VAL
346
n
346
VAL
346
A
ARG
347
n
347
ARG
347
A
THR
348
n
348
THR
348
A
LEU
349
n
349
LEU
349
A
VAL
350
n
350
VAL
350
A
PRO
351
n
351
PRO
351
A
THR
352
n
352
THR
352
A
GLU
353
n
353
GLU
353
A
MET
354
n
354
MET
354
A
GLN
355
n
355
GLN
355
A
VAL
356
n
356
VAL
356
A
THR
357
n
357
THR
357
A
ALA
358
n
358
ALA
358
A
PRO
359
n
359
PRO
359
A
ALA
360
n
360
ALA
360
A
ASN
361
n
361
ASN
361
A
ILE
362
n
362
ILE
362
A
SER
363
n
363
SER
363
A
ALA
364
n
364
ALA
364
A
SER
365
n
365
SER
365
A
ALA
366
n
366
ALA
366
A
GLN
367
n
367
GLN
367
A
THR
368
n
368
THR
368
A
PHE
369
n
369
PHE
369
A
GLU
370
n
370
GLU
370
A
VAL
371
n
371
VAL
371
A
ALA
372
n
372
ALA
372
A
CYS
373
n
373
CYS
373
A
ASP
374
n
374
ASP
374
A
TYR
375
n
375
TYR
375
A
ASN
376
n
376
ASN
376
A
GLY
377
n
377
GLY
377
A
ALA
378
n
378
ALA
378
A
ILE
379
n
379
ILE
379
A
ALA
380
n
380
ALA
380
A
THR
381
n
381
THR
381
A
LEU
382
n
382
LEU
382
A
SER
383
n
383
SER
383
A
ASP
384
n
384
ASP
384
A
ASP
385
n
385
ASP
385
A
GLY
386
n
386
GLY
386
A
ASP
387
n
387
ASP
387
A
MET
388
n
388
MET
388
A
VAL
389
n
389
VAL
389
A
GLY
390
n
390
GLY
390
A
THR
391
n
391
THR
391
A
ALA
392
n
392
ALA
392
A
ILE
393
n
393
ILE
393
A
VAL
394
n
394
VAL
394
A
LYS
395
n
395
LYS
395
A
ASP
396
n
396
ASP
396
A
GLY
397
n
397
GLY
397
A
LYS
398
n
398
LYS
398
A
ALA
399
n
399
ALA
399
A
ILE
400
n
400
ILE
400
A
ILE
401
n
401
ILE
401
A
LYS
402
n
402
LYS
402
A
LEU
403
n
403
LEU
403
A
ASN
404
n
404
ASN
404
A
GLU
405
n
405
GLU
405
A
SER
406
n
406
SER
406
A
ILE
407
n
407
ILE
407
A
ALA
408
n
408
ALA
408
A
ASP
409
n
409
ASP
409
A
GLU
410
n
410
GLU
410
A
THR
411
n
411
THR
411
A
ASN
412
n
412
ASN
412
A
LEU
413
n
413
LEU
413
A
THR
414
n
414
THR
414
A
LEU
415
n
415
LEU
415
A
THR
416
n
416
THR
416
A
VAL
417
n
417
VAL
417
A
VAL
418
n
418
VAL
418
A
GLY
419
n
419
GLY
419
A
TYR
420
n
420
TYR
420
A
ASN
421
n
421
ASN
421
A
LYS
422
n
422
LYS
422
A
VAL
423
n
423
VAL
423
A
THR
424
n
424
THR
424
A
VAL
425
n
425
VAL
425
A
ILE
426
n
426
ILE
426
A
LYS
427
n
427
LYS
427
A
ASP
428
n
428
ASP
428
A
VAL
429
n
429
VAL
429
A
LYS
430
n
430
LYS
430
A
VAL
431
n
431
VAL
431
A
GLU
432
n
432
GLU
432
A
n
433
433
A
n
434
434
A
n
435
435
A
author_and_software_defined_assembly
PISA
1
monomeric
A
GLU
296
A
OE2
GLU
296
1_555
A
CA
505
F
CA
CA
1_555
A
GLU
293
A
OE1
GLU
293
1_555
101.7
A
GLU
296
A
OE2
GLU
296
1_555
A
CA
505
F
CA
CA
1_555
A
HOH
619
K
O
HOH
1_555
105.5
A
GLU
293
A
OE1
GLU
293
1_555
A
CA
505
F
CA
CA
1_555
A
HOH
619
K
O
HOH
1_555
104.8
A
GLU
296
A
OE2
GLU
296
1_555
A
CA
505
F
CA
CA
1_555
A
GLU
293
A
OE2
GLU
293
1_555
142.1
A
GLU
293
A
OE1
GLU
293
1_555
A
CA
505
F
CA
CA
1_555
A
GLU
293
A
OE2
GLU
293
1_555
48.5
A
HOH
619
K
O
HOH
1_555
A
CA
505
F
CA
CA
1_555
A
GLU
293
A
OE2
GLU
293
1_555
105.1
A
GLU
119
A
OE1
GLU
119
1_555
A
CA
508
I
CA
CA
1_555
A
HOH
922
K
O
HOH
1_555
97.0
A
GLU
119
A
OE1
GLU
119
1_555
A
CA
508
I
CA
CA
1_555
A
HOH
712
K
O
HOH
1_555
74.8
A
HOH
922
K
O
HOH
1_555
A
CA
508
I
CA
CA
1_555
A
HOH
712
K
O
HOH
1_555
171.1
A
GLU
119
A
OE1
GLU
119
1_555
A
CA
508
I
CA
CA
1_555
A
GLU
119
A
OE2
GLU
119
1_555
56.9
A
HOH
922
K
O
HOH
1_555
A
CA
508
I
CA
CA
1_555
A
GLU
119
A
OE2
GLU
119
1_555
62.7
A
HOH
712
K
O
HOH
1_555
A
CA
508
I
CA
CA
1_555
A
GLU
119
A
OE2
GLU
119
1_555
113.9
A
GLU
161
A
OE1
GLU
161
1_555
A
CA
502
C
CA
CA
1_555
A
HOH
882
K
O
HOH
1_555
78.5
A
GLU
161
A
OE1
GLU
161
1_555
A
CA
502
C
CA
CA
1_555
A
ASP
292
A
OD2
ASP
292
1_555
161.7
A
HOH
882
K
O
HOH
1_555
A
CA
502
C
CA
CA
1_555
A
ASP
292
A
OD2
ASP
292
1_555
86.6
A
GLU
161
A
OE1
GLU
161
1_555
A
CA
502
C
CA
CA
1_555
A
HOH
818
K
O
HOH
1_555
99.1
A
HOH
882
K
O
HOH
1_555
A
CA
502
C
CA
CA
1_555
A
HOH
818
K
O
HOH
1_555
175.9
A
ASP
292
A
OD2
ASP
292
1_555
A
CA
502
C
CA
CA
1_555
A
HOH
818
K
O
HOH
1_555
96.3
A
GLU
161
A
OE1
GLU
161
1_555
A
CA
502
C
CA
CA
1_555
A
HOH
717
K
O
HOH
1_555
87.7
A
HOH
882
K
O
HOH
1_555
A
CA
502
C
CA
CA
1_555
A
HOH
717
K
O
HOH
1_555
94.9
A
ASP
292
A
OD2
ASP
292
1_555
A
CA
502
C
CA
CA
1_555
A
HOH
717
K
O
HOH
1_555
82.8
A
HOH
818
K
O
HOH
1_555
A
CA
502
C
CA
CA
1_555
A
HOH
717
K
O
HOH
1_555
88.4
A
GLU
152
A
OE1
GLU
152
1_555
A
ZN
507
H
ZN
ZN
1_555
A
HIS
211
A
NE2
HIS
211
1_555
110.5
A
ASP
78
A
OD1
ASP
78
1_555
A
CA
503
D
CA
CA
1_555
A
GLU
258
A
OE2
GLU
258
1_555
81.1
A
ASP
78
A
OD1
ASP
78
1_555
A
CA
503
D
CA
CA
1_555
A
HOH
690
K
O
HOH
1_555
76.9
A
GLU
258
A
OE2
GLU
258
1_555
A
CA
503
D
CA
CA
1_555
A
HOH
690
K
O
HOH
1_555
99.9
A
ASP
78
A
OD1
ASP
78
1_555
A
CA
503
D
CA
CA
1_555
A
HOH
632
K
O
HOH
1_555
150.5
A
GLU
258
A
OE2
GLU
258
1_555
A
CA
503
D
CA
CA
1_555
A
HOH
632
K
O
HOH
1_555
110.9
A
HOH
690
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
HOH
632
K
O
HOH
1_555
74.6
A
ASP
78
A
OD1
ASP
78
1_555
A
CA
503
D
CA
CA
1_555
A
HOH
672
K
O
HOH
1_555
86.4
A
GLU
258
A
OE2
GLU
258
1_555
A
CA
503
D
CA
CA
1_555
A
HOH
672
K
O
HOH
1_555
165.1
A
HOH
690
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
HOH
672
K
O
HOH
1_555
84.8
A
HOH
632
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
HOH
672
K
O
HOH
1_555
83.9
A
ASP
78
A
OD1
ASP
78
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
78
A
OD2
ASP
78
1_555
53.6
A
GLU
258
A
OE2
GLU
258
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
78
A
OD2
ASP
78
1_555
85.7
A
HOH
690
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
78
A
OD2
ASP
78
1_555
128.9
A
HOH
632
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
78
A
OD2
ASP
78
1_555
149.9
A
HOH
672
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
78
A
OD2
ASP
78
1_555
80.4
A
ASP
78
A
OD1
ASP
78
1_555
A
CA
503
D
CA
CA
1_555
A
PHE
249
A
O
PHE
249
1_555
130.8
A
GLU
258
A
OE2
GLU
258
1_555
A
CA
503
D
CA
CA
1_555
A
PHE
249
A
O
PHE
249
1_555
102.0
A
HOH
690
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
PHE
249
A
O
PHE
249
1_555
147.0
A
HOH
632
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
PHE
249
A
O
PHE
249
1_555
74.6
A
HOH
672
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
PHE
249
A
O
PHE
249
1_555
80.2
A
ASP
78
A
OD2
ASP
78
1_555
A
CA
503
D
CA
CA
1_555
A
PHE
249
A
O
PHE
249
1_555
77.4
A
ASP
78
A
OD1
ASP
78
1_555
A
CA
503
D
CA
CA
1_555
A
GLU
258
A
OE1
GLU
258
1_555
119.3
A
GLU
258
A
OE2
GLU
258
1_555
A
CA
503
D
CA
CA
1_555
A
GLU
258
A
OE1
GLU
258
1_555
49.7
A
HOH
690
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
GLU
258
A
OE1
GLU
258
1_555
79.3
A
HOH
632
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
GLU
258
A
OE1
GLU
258
1_555
62.1
A
HOH
672
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
GLU
258
A
OE1
GLU
258
1_555
145.1
A
ASP
78
A
OD2
ASP
78
1_555
A
CA
503
D
CA
CA
1_555
A
GLU
258
A
OE1
GLU
258
1_555
133.2
A
PHE
249
A
O
PHE
249
1_555
A
CA
503
D
CA
CA
1_555
A
GLU
258
A
OE1
GLU
258
1_555
96.6
A
HOH
819
K
O
HOH
1_555
A
CA
504
E
CA
CA
1_555
A
VAL
100
A
O
VAL
100
1_555
83.7
A
HOH
819
K
O
HOH
1_555
A
CA
504
E
CA
CA
1_555
A
HOH
716
K
O
HOH
1_555
153.0
A
VAL
100
A
O
VAL
100
1_555
A
CA
504
E
CA
CA
1_555
A
HOH
716
K
O
HOH
1_555
87.2
A
HOH
819
K
O
HOH
1_555
A
CA
504
E
CA
CA
1_555
A
TYR
105
A
O
TYR
105
1_555
91.8
A
VAL
100
A
O
VAL
100
1_555
A
CA
504
E
CA
CA
1_555
A
TYR
105
A
O
TYR
105
1_555
171.3
A
HOH
716
K
O
HOH
1_555
A
CA
504
E
CA
CA
1_555
A
TYR
105
A
O
TYR
105
1_555
100.0
A
HOH
819
K
O
HOH
1_555
A
CA
504
E
CA
CA
1_555
A
ASP
103
A
OD2
ASP
103
1_555
73.1
A
VAL
100
A
O
VAL
100
1_555
A
CA
504
E
CA
CA
1_555
A
ASP
103
A
OD2
ASP
103
1_555
92.4
A
HOH
716
K
O
HOH
1_555
A
CA
504
E
CA
CA
1_555
A
ASP
103
A
OD2
ASP
103
1_555
81.9
A
TYR
105
A
O
TYR
105
1_555
A
CA
504
E
CA
CA
1_555
A
ASP
103
A
OD2
ASP
103
1_555
93.5
A
HOH
819
K
O
HOH
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
107
A
OE2
GLU
107
1_555
127.9
A
VAL
100
A
O
VAL
100
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
107
A
OE2
GLU
107
1_555
95.0
A
HOH
716
K
O
HOH
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
107
A
OE2
GLU
107
1_555
78.2
A
TYR
105
A
O
TYR
105
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
107
A
OE2
GLU
107
1_555
81.9
A
ASP
103
A
OD2
ASP
103
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
107
A
OE2
GLU
107
1_555
158.4
A
HOH
819
K
O
HOH
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
107
A
OE1
GLU
107
1_555
78.8
A
VAL
100
A
O
VAL
100
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
107
A
OE1
GLU
107
1_555
82.0
A
HOH
716
K
O
HOH
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
107
A
OE1
GLU
107
1_555
125.0
A
TYR
105
A
O
TYR
105
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
107
A
OE1
GLU
107
1_555
89.9
A
ASP
103
A
OD2
ASP
103
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
107
A
OE1
GLU
107
1_555
151.8
A
GLU
107
A
OE2
GLU
107
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
107
A
OE1
GLU
107
1_555
49.7
A
HIS
130
A
ND1
HIS
130
1_555
A
ZN
509
J
ZN
ZN
1_555
A
HOH
921
K
O
HOH
1_555
126.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ARG
37
A
O
ARG
37
A
N
MET
12
A
N
MET
12
A
O
ARG
11
A
O
ARG
11
A
N
THR
71
A
N
THR
71
A
O
THR
71
A
O
THR
71
A
N
PHE
109
A
N
PHE
109
A
O
THR
87
A
O
THR
87
A
N
ILE
90
A
N
ILE
90
A
N
ILE
183
A
N
ILE
183
A
O
ALA
145
A
O
ALA
145
A
N
LEU
146
A
N
LEU
146
A
O
LEU
205
A
O
LEU
205
A
N
VAL
206
A
N
VAL
206
A
O
PHE
238
A
O
PHE
238
A
N
ILE
239
A
N
ILE
239
A
O
ALA
274
A
O
ALA
274
A
O
ALA
277
A
O
ALA
277
A
N
THR
337
A
N
THR
337
A
N
LYS
265
A
N
LYS
265
A
O
LYS
268
A
O
LYS
268
A
O
THR
357
A
O
THR
357
A
N
ALA
372
A
N
ALA
372
A
O
VAL
371
A
O
VAL
371
A
N
ALA
399
A
N
ALA
399
A
N
ILE
362
A
N
ILE
362
A
O
LYS
430
A
O
LYS
430
A
N
VAL
429
A
N
VAL
429
A
O
LEU
413
A
O
LEU
413
A
O
VAL
418
A
O
VAL
418
A
N
ILE
379
A
N
ILE
379
A
N
ASP
384
A
N
ASP
384
A
O
ASP
387
A
O
ASP
387
1
A
GLY
433
A
GLY
433
1
Y
1
A
THR
434
A
THR
434
1
Y
1
A
SER
435
A
SER
435
1
Y
1
A
A
ND1
O
HIS
HOH
104
860
2.08
1
A
A
OE2
O
GLU
HOH
410
821
2.13
1
A
A
OE1
O
GLN
HOH
98
860
2.15
1
A
A
OD2
O
ASP
HOH
409
821
2.15
1
A
A
OE2
O
GLU
HOH
405
922
2.01
1_555
4_566
1
A
ALA
47
-174.11
146.25
1
A
SER
220
102.70
-28.27
1
A
VAL
245
30.58
12.47
1
A
LYS
326
54.02
-130.57
0.2070000
0.1630000
2.0
15.0
1865
25583
23281
99.0
RANDOM
1
0
0
ENGH & HUBER
2.0
15.0
322
3709
42
0
3345
0.009
1.55
20.7
2.0
15.64
1CVR
27024
25583
2.0
2.0
0.0780000
1
7.1
3.3
99
0.2310000
2.03
2.14
1
3.1
96.3
phasing
MOLREP
refinement
CNS
data reduction
MOSFLM
data scaling
CCP4
(TRUNCATE)
GINGIPAIN R (E.C. 3.4.22.37)
Crystal structure of the Arg specific cysteine proteinase gingipain R (RGPB)
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
3
N
N
4
N
N
5
N
N
A
LYS
18
A
LYS
18
HELX_P
A
ASP
23
A
ASP
23
5
1
6
A
ILE
24
A
ILE
24
HELX_P
A
ARG
34
A
ARG
34
1
2
11
A
ALA
43
A
ALA
43
HELX_P
A
ALA
47
A
ALA
47
1
3
5
A
THR
51
A
THR
51
HELX_P
A
LYS
65
A
LYS
65
1
4
15
A
ASP
93
A
ASP
93
HELX_P
A
GLN
98
A
GLN
98
5
5
6
A
SER
117
A
SER
117
HELX_P
A
ASN
134
A
ASN
134
1
6
18
A
ALA
157
A
ALA
157
HELX_P
A
GLU
161
A
GLU
161
5
7
5
A
SER
162
A
SER
162
HELX_P
A
GLY
178
A
GLY
178
1
8
17
A
THR
191
A
THR
191
HELX_P
A
GLY
202
A
GLY
202
1
9
12
A
HIS
226
A
HIS
226
HELX_P
A
LEU
230
A
LEU
230
5
10
5
A
CYS
255
A
CYS
255
HELX_P
A
ALA
263
A
ALA
263
1
11
9
A
ALA
285
A
ALA
285
HELX_P
A
CYS
299
A
CYS
299
1
12
15
A
THR
309
A
THR
309
HELX_P
A
LYS
326
A
LYS
326
1
13
18
A
TYR
325
A
TYR
325
HELX_P
A
THR
335
A
THR
335
1
14
11
metalc
1.956
A
GLU
296
A
OE2
GLU
296
1_555
A
CA
505
F
CA
CA
1_555
metalc
2.054
A
GLU
293
A
OE1
GLU
293
1_555
A
CA
505
F
CA
CA
1_555
metalc
2.062
A
GLU
119
A
OE1
GLU
119
1_555
A
CA
508
I
CA
CA
1_555
metalc
2.106
A
GLU
161
A
OE1
GLU
161
1_555
A
CA
502
C
CA
CA
1_555
metalc
2.127
A
CA
502
C
CA
CA
1_555
A
HOH
882
K
O
HOH
1_555
metalc
2.169
A
ASP
292
A
OD2
ASP
292
1_555
A
CA
502
C
CA
CA
1_555
metalc
2.171
A
CA
502
C
CA
CA
1_555
A
HOH
818
K
O
HOH
1_555
metalc
2.178
A
CA
505
F
CA
CA
1_555
A
HOH
619
K
O
HOH
1_555
metalc
2.201
A
CA
502
C
CA
CA
1_555
A
HOH
717
K
O
HOH
1_555
metalc
2.300
A
CA
508
I
CA
CA
1_555
A
HOH
922
K
O
HOH
1_555
metalc
2.303
A
GLU
152
A
OE1
GLU
152
1_555
A
ZN
507
H
ZN
ZN
1_555
metalc
2.309
A
ASP
78
A
OD1
ASP
78
1_555
A
CA
503
D
CA
CA
1_555
metalc
2.310
A
CA
504
E
CA
CA
1_555
A
HOH
819
K
O
HOH
1_555
metalc
2.324
A
VAL
100
A
O
VAL
100
1_555
A
CA
504
E
CA
CA
1_555
metalc
2.327
A
HIS
130
A
ND1
HIS
130
1_555
A
ZN
509
J
ZN
ZN
1_555
metalc
2.331
A
GLU
258
A
OE2
GLU
258
1_555
A
CA
503
D
CA
CA
1_555
metalc
2.334
A
CA
504
E
CA
CA
1_555
A
HOH
716
K
O
HOH
1_555
metalc
2.346
A
TYR
105
A
O
TYR
105
1_555
A
CA
504
E
CA
CA
1_555
metalc
2.409
A
ASP
103
A
OD2
ASP
103
1_555
A
CA
504
E
CA
CA
1_555
metalc
2.411
A
HIS
211
A
NE2
HIS
211
1_555
A
ZN
507
H
ZN
ZN
1_555
metalc
2.412
A
CA
506
G
CA
CA
1_555
A
HOH
677
K
O
HOH
1_555
metalc
2.439
A
CA
503
D
CA
CA
1_555
A
HOH
690
K
O
HOH
1_555
metalc
2.444
A
CA
503
D
CA
CA
1_555
A
HOH
632
K
O
HOH
1_555
metalc
2.479
A
GLU
107
A
OE2
GLU
107
1_555
A
CA
504
E
CA
CA
1_555
metalc
2.484
A
CA
508
I
CA
CA
1_555
A
HOH
712
K
O
HOH
1_555
metalc
2.503
A
GLU
119
A
OE2
GLU
119
1_555
A
CA
508
I
CA
CA
1_555
metalc
2.527
A
CA
503
D
CA
CA
1_555
A
HOH
672
K
O
HOH
1_555
metalc
2.533
A
ASP
78
A
OD2
ASP
78
1_555
A
CA
503
D
CA
CA
1_555
metalc
2.557
A
PHE
249
A
O
PHE
249
1_555
A
CA
503
D
CA
CA
1_555
metalc
2.634
A
ZN
509
J
ZN
ZN
1_555
A
HOH
921
K
O
HOH
1_555
metalc
2.728
A
GLU
107
A
OE1
GLU
107
1_555
A
CA
504
E
CA
CA
1_555
metalc
2.799
A
GLU
258
A
OE1
GLU
258
1_555
A
CA
503
D
CA
CA
1_555
metalc
2.898
A
GLU
293
A
OE2
GLU
293
1_555
A
CA
505
F
CA
CA
1_555
covale
1.795
A
CYS
244
A
SG
CYS
244
1_555
A
H37
501
B
C3
H37
1_555
HYDROLASE/HYDROLASE INHIBITOR
CASPASES, CYSTEINE PROTEINASE, HYDROLASE-HYDROLASE INHIBITOR complex
A
SER
48
A
SER
48
1
A
PRO
49
A
PRO
49
0.21
A
ASP
187
A
ASP
187
1
A
PRO
188
A
PRO
188
-0.34
CPG2_PORGI
UNP
1
230
P95493
YTPVEEKENGRMIVIVAKKYEGDIKDFVDWKNQRGLRTEVKVAEDIASPVTANAIQQFVKQEYEKEGNDLTYVLLVGDHK
DIPAKITPGIKSDQVYGQIVGNDHYNEVFIGRFSCESKEDLKTQIDRTIHYERNITTEDKWLGQALCIASAEGGPSADNG
ESDIQHENVIANLLTQYGYTKIIKCYDPGVTPKNIIDAFNGGISLVNYTGHGSETAWGTSHFGTTHVKQLTNSNQLPFIF
DVACVNGDFLFSMPCFAEALMRAQKDGKPTGTVAIIASTIDQYWAPPMRGQDEMNEILCEKHPNNIKRTFGGVTMNGMFA
MVEKYKKDGENMLDTWTVFGDPSLLVRTLVPTEMQVTAPANISASAQTFEVACDYNGAIATLSDDGDMVGTAIVKDGKAI
IKLNESIADETNLTLTVVGYNKVTVIKDVKVEGTS
230
664
1CVR
1
435
P95493
A
1
1
435
4
2
6
2
3
5
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
37
A
ARG
37
A
VAL
42
A
VAL
42
A
ARG
11
A
ARG
11
A
VAL
16
A
VAL
16
A
LEU
70
A
LEU
70
A
VAL
76
A
VAL
76
A
PHE
109
A
PHE
109
A
PHE
113
A
PHE
113
A
LYS
85
A
LYS
85
A
THR
87
A
THR
87
A
ILE
90
A
ILE
90
A
SER
92
A
SER
92
A
LYS
181
A
LYS
181
A
TYR
186
A
TYR
186
A
GLN
144
A
GLN
144
A
ALA
149
A
ALA
149
A
LEU
205
A
LEU
205
A
THR
209
A
THR
209
A
PHE
238
A
PHE
238
A
VAL
242
A
VAL
242
A
ALA
274
A
ALA
274
A
SER
278
A
SER
278
A
TRP
336
A
TRP
336
A
PHE
339
A
PHE
339
A
GLN
264
A
GLN
264
A
LYS
265
A
LYS
265
A
LYS
268
A
LYS
268
A
PRO
269
A
PRO
269
A
VAL
356
A
VAL
356
A
THR
357
A
THR
357
A
THR
368
A
THR
368
A
CYS
373
A
CYS
373
A
LYS
398
A
LYS
398
A
LYS
402
A
LYS
402
A
ASN
361
A
ASN
361
A
SER
363
A
SER
363
A
VAL
425
A
VAL
425
A
GLU
432
A
GLU
432
A
ASN
412
A
ASN
412
A
VAL
418
A
VAL
418
A
ILE
379
A
ILE
379
A
ASP
384
A
ASP
384
A
ASP
387
A
ASP
387
A
ILE
393
A
ILE
393
BINDING SITE FOR RESIDUE H37 A 501
Software
16
BINDING SITE FOR RESIDUE CA A 502
Software
6
BINDING SITE FOR RESIDUE CA A 503
Software
6
BINDING SITE FOR RESIDUE CA A 504
Software
6
BINDING SITE FOR RESIDUE CA A 505
Software
4
BINDING SITE FOR RESIDUE CA A 506
Software
4
BINDING SITE FOR RESIDUE ZN A 507
Software
6
BINDING SITE FOR RESIDUE CA A 508
Software
5
BINDING SITE FOR RESIDUE ZN A 509
Software
4
A
ASP
163
A
ASP
163
16
1_555
A
THR
191
A
THR
191
16
4_556
A
PRO
192
A
PRO
192
16
4_556
A
GLY
210
A
GLY
210
16
1_555
A
HIS
211
A
HIS
211
16
1_555
A
GLY
212
A
GLY
212
16
1_555
A
HIS
221
A
HIS
221
16
4_556
A
VAL
242
A
VAL
242
16
1_555
A
CYS
244
A
CYS
244
16
1_555
A
GLN
282
A
GLN
282
16
1_555
A
TYR
283
A
TYR
283
16
1_555
A
TRP
284
A
TRP
284
16
1_555
A
MET
288
A
MET
288
16
1_555
A
HOH
640
K
HOH
16
1_555
A
HOH
724
K
HOH
16
1_555
A
HOH
772
K
HOH
16
4_556
A
GLU
161
A
GLU
161
6
1_555
A
HIS
166
A
HIS
166
6
1_555
A
ASP
292
A
ASP
292
6
1_555
A
HOH
717
K
HOH
6
1_555
A
HOH
818
K
HOH
6
1_555
A
HOH
882
K
HOH
6
1_555
A
ASP
78
A
ASP
78
6
1_555
A
PHE
249
A
PHE
249
6
1_555
A
GLU
258
A
GLU
258
6
1_555
A
HOH
632
K
HOH
6
1_555
A
HOH
672
K
HOH
6
1_555
A
HOH
690
K
HOH
6
1_555
A
VAL
100
A
VAL
100
6
1_555
A
ASP
103
A
ASP
103
6
1_555
A
TYR
105
A
TYR
105
6
1_555
A
GLU
107
A
GLU
107
6
1_555
A
HOH
716
K
HOH
6
1_555
A
HOH
819
K
HOH
6
1_555
A
GLU
293
A
GLU
293
4
1_555
A
GLU
296
A
GLU
296
4
1_555
A
HIS
302
A
HIS
302
4
1_555
A
HOH
619
K
HOH
4
1_555
A
HIS
221
A
HIS
221
4
1_555
A
ASP
328
A
ASP
328
4
4_456
A
HOH
646
K
HOH
4
4_456
A
HOH
677
K
HOH
4
1_555
A
GLU
152
A
GLU
152
6
1_555
A
HIS
211
A
HIS
211
6
1_555
A
TRP
284
A
TRP
284
6
1_555
A
LYS
327
A
LYS
327
6
4_456
A
HOH
724
K
HOH
6
1_555
A
HOH
920
K
HOH
6
1_555
A
GLU
119
A
GLU
119
5
1_555
A
ASP
387
A
ASP
387
5
4_466
A
GLU
405
A
GLU
405
5
4_466
A
HOH
712
K
HOH
5
1_555
A
HOH
922
K
HOH
5
1_555
A
HIS
130
A
HIS
130
4
1_555
A
ASN
134
A
ASN
134
4
1_555
A
HOH
852
K
HOH
4
4_466
A
HOH
921
K
HOH
4
1_555
19
P 21 21 21