0.02899
0.00000
0.00000
0.00000
0.02591
0.00000
0.00000
0.00000
0.02123
0.00000
0.00000
0.00000
Kielkopf, C.L.
Bremer, R.E.
White, S.
Baird, E.E.
Dervan, P.B.
Rees, D.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
34.493
38.593
47.112
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
C31 H42 N11 O5 1
648.736
IMIDAZOLE-PYRROLE POLYAMIDE
IMIDAZOLE-PYRROLE-PYRROLE-PYRROLE-BETA ALANINE-DIMETHYLAMINO PROPYLAMIDE
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
Y
147
N
C
Y
148
N
C
Y
149
N
C
N
150
N
C
Y
151
N
C
N
152
N
C
Y
153
N
C
Y
154
N
C
N
155
N
C
Y
156
N
C
N
157
N
C
Y
158
N
C
Y
159
N
C
Y
160
N
C
N
161
N
C
Y
162
N
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
Y
170
N
C
Y
171
N
C
Y
172
N
C
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
Y
177
N
C
N
178
N
O
N
179
N
O
N
180
N
O
N
181
N
O
N
182
N
O
Y
183
N
N
N
184
N
N
Y
185
N
N
N
186
N
N
Y
187
N
N
N
188
N
N
N
189
N
N
N
190
N
N
Y
191
N
N
Y
192
N
N
N
193
N
N
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
Y
152
N
doub
Y
153
N
sing
N
154
N
sing
Y
155
N
sing
Y
156
N
doub
N
157
N
sing
Y
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
Y
165
N
doub
Y
166
N
sing
N
167
N
doub
N
168
N
sing
Y
169
N
doub
N
170
N
sing
Y
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
Y
178
N
sing
N
179
N
doub
N
180
N
sing
Y
181
N
sing
Y
182
N
doub
N
183
N
sing
Y
184
N
doub
N
185
N
sing
Y
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
Y
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
Y
217
N
sing
Y
218
N
doub
Y
219
N
doub
Y
220
N
sing
N
221
N
sing
Y
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
295
557
567
10.1006/jmbi.1999.3364
10623546
Structural effects of DNA sequence on T.A recognition by hydroxypyrrole/pyrrole pairs in the minor groove.
2000
10.2210/pdb1cvy/pdb
pdb_00001cvy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
103
1
IMAGE PLATE
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
3045.004
5'-D(*CP*CP*AP*GP*AP*TP*CP*TP*GP*G)-3'
2
syn
polymer
648.736
IMIDAZOLE-PYRROLE POLYAMIDE
2
syn
non-polymer
18.015
water
52
nat
water
no
no
(DC)(DC)(DA)(DG)(DA)(DT)(DC)(DT)(DG)(DG)
CCAGATCTGG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
1
2.47
50.22
VAPOR DIFFUSION, SITTING DROP
8.1
CALCIUM ACETATE, TRIS, MPD, pH 8.1, VAPOR DIFFUSION, SITTING DROP, temperature 277.0K
277.0
CALCIUM ACETATE
1
TRIS
1
MPD
1
MPD
2
-6.256
1
19
A
1
B
10
0.952
A_DC1:DG10_B
1
-27.964
-0.626
0.127
0.142
-10.405
1
19
A
2
B
9
0.096
A_DC2:DG9_B
2
-9.515
0.211
0.362
-0.192
-0.879
1
20
A
3
B
8
3.554
A_DA3:DT8_B
3
-6.611
-0.185
0.344
-0.236
-4.465
1
19
A
4
B
7
-1.101
A_DG4:DC7_B
4
-11.442
0.000
0.313
-0.269
-4.843
1
20
A
5
B
6
-12.831
A_DA5:DT6_B
5
-17.575
-0.289
0.160
0.058
1.535
1
20
A
6
B
5
-10.747
A_DT6:DA5_B
6
-18.954
0.148
0.481
0.114
2.826
1
19
A
7
B
4
1.110
A_DC7:DG4_B
7
-2.919
0.760
0.159
-0.396
0.333
1
20
A
8
B
3
4.598
A_DT8:DA3_B
8
-0.906
0.510
0.188
-0.242
2.769
1
19
A
9
B
2
1.639
A_DG9:DC2_B
9
-8.626
0.025
0.098
-0.168
8.015
1
19
A
10
B
1
4.152
A_DG10:DC1_B
10
-29.570
-0.155
0.110
-0.269
3.548
37.339
A
A
1
2
15.401
B
B
10
9
3.579
9.752
-0.112
0.332
AA_DC1DC2:DG9DG10_BB
1
-1.210
1.910
36.067
-0.910
-0.002
3.204
40.098
A
A
2
3
2.051
B
B
9
8
3.164
1.405
-0.014
1.405
AA_DC2DA3:DT8DG9_BB
2
-2.741
4.002
39.984
1.893
-0.285
3.276
31.902
A
A
3
4
27.312
B
B
8
7
3.514
14.465
-0.972
0.122
AA_DA3DG4:DC7DT8_BB
3
-3.057
5.771
28.349
-2.678
1.156
3.449
37.899
A
A
4
5
-0.696
B
B
7
6
3.253
-0.450
-1.661
1.020
AA_DG4DA5:DT6DC7_BB
4
-5.729
8.853
37.477
1.629
1.802
3.005
38.070
A
A
5
6
-16.519
B
B
6
5
3.132
-10.642
0.202
0.027
AA_DA5DT6:DA5DT6_BB
5
-0.562
0.872
36.601
1.335
-0.379
3.507
42.514
A
A
6
7
1.586
B
B
5
4
3.233
1.144
1.668
1.230
AA_DT6DC7:DG4DA5_BB
6
7.835
-10.863
41.804
1.576
-1.476
3.263
29.070
A
A
7
8
30.701
B
B
4
3
3.483
14.672
0.733
0.357
AA_DC7DT8:DA3DG4_BB
7
4.032
-8.437
24.843
-2.883
-0.472
3.235
42.105
A
A
8
9
-1.885
B
B
3
2
3.314
-1.353
0.004
2.268
AA_DT8DG9:DC2DA3_BB
8
2.964
-4.130
41.984
3.298
0.301
3.121
30.581
A
A
9
10
24.796
B
B
2
1
3.138
12.694
0.265
0.604
AA_DG9DG10:DC1DC2_BB
9
1.600
-3.125
27.834
-1.381
-0.185
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Structure summary
Data collection
Database references
Derived calculations
1
0
2000-01-15
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-02-01
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
HYDROXYPYRROLE COUNTERPART
RCSB
Y
RCSB
1999-08-24
REL
IPY
IMIDAZOLE-PYRROLE POLYAMIDE
HOH
water
IPY
12
2
IPY
IPY
12
A
IPY
11
2
IPY
IPY
11
B
HOH
23
3
HOH
HOH
23
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
36
3
HOH
HOH
36
A
HOH
37
3
HOH
HOH
37
A
HOH
38
3
HOH
HOH
38
A
HOH
39
3
HOH
HOH
39
A
HOH
42
3
HOH
HOH
42
A
HOH
48
3
HOH
HOH
48
A
HOH
51
3
HOH
HOH
51
A
HOH
54
3
HOH
HOH
54
A
HOH
55
3
HOH
HOH
55
A
HOH
56
3
HOH
HOH
56
A
HOH
57
3
HOH
HOH
57
A
HOH
58
3
HOH
HOH
58
A
HOH
59
3
HOH
HOH
59
A
HOH
60
3
HOH
HOH
60
A
HOH
62
3
HOH
HOH
62
A
HOH
63
3
HOH
HOH
63
A
HOH
64
3
HOH
HOH
64
A
HOH
67
3
HOH
HOH
67
A
HOH
68
3
HOH
HOH
68
A
HOH
69
3
HOH
HOH
69
A
HOH
74
3
HOH
HOH
74
A
HOH
24
3
HOH
HOH
24
B
HOH
34
3
HOH
HOH
34
B
HOH
35
3
HOH
HOH
35
B
HOH
40
3
HOH
HOH
40
B
HOH
41
3
HOH
HOH
41
B
HOH
43
3
HOH
HOH
43
B
HOH
44
3
HOH
HOH
44
B
HOH
45
3
HOH
HOH
45
B
HOH
46
3
HOH
HOH
46
B
HOH
47
3
HOH
HOH
47
B
HOH
49
3
HOH
HOH
49
B
HOH
50
3
HOH
HOH
50
B
HOH
52
3
HOH
HOH
52
B
HOH
53
3
HOH
HOH
53
B
HOH
61
3
HOH
HOH
61
B
HOH
65
3
HOH
HOH
65
B
HOH
66
3
HOH
HOH
66
B
HOH
70
3
HOH
HOH
70
B
HOH
71
3
HOH
HOH
71
B
HOH
72
3
HOH
HOH
72
B
HOH
73
3
HOH
HOH
73
B
C
1
n
1
DC
1
A
C
2
n
2
DC
2
A
A
3
n
3
DA
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
T
6
n
6
DT
6
A
C
7
n
7
DC
7
A
T
8
n
8
DT
8
A
G
9
n
9
DG
9
A
G
10
n
10
DG
10
A
C
1
n
1
DC
1
B
C
2
n
2
DC
2
B
A
3
n
3
DA
3
B
G
4
n
4
DG
4
B
A
5
n
5
DA
5
B
T
6
n
6
DT
6
B
C
7
n
7
DC
7
B
T
8
n
8
DT
8
B
G
9
n
9
DG
9
B
G
10
n
10
DG
10
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
O
HOH
HOH
25
69
2.08
1
A
A
N3
O
DG
HOH
10
67
2.12
1
A
A
O
O
HOH
HOH
25
68
2.13
1
A
DA
5
0.080
SIDE CHAIN
1
B
DA
5
0.076
SIDE CHAIN
1
2.21
0.30
108.30
110.51
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
-4.83
0.80
102.40
97.57
A
A
A
C3'
C2'
C1'
DG
DG
DG
10
10
10
N
1
3.89
0.30
108.30
112.19
B
B
B
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
6.86
1.10
110.50
117.36
B
B
B
O3'
P
OP1
DT
DC
DC
6
7
7
Y
1
A
A
N9
C4
DA
DA
3
3
0.036
0.006
1.374
1.410
N
1
A
A
N3
C4
DC
DC
7
7
-0.043
0.007
1.335
1.292
N
1
A
A
O3'
C3'
DG
DG
9
9
-0.047
0.006
1.419
1.372
N
0.2290000
0.2290000
0.2290000
2.15
17.0
144
3618
3618
5
97.2
RANDOM
1
THROUGHOUT
0
0
2.15
17.0
52
550
94
404
0
0.02
2.1
2.15
17.0
1CVY
3618
3618
0
0.0410000
1
33.8
5.9
97.2
0.0740000
2.15
2.25
1
94.2
phasing
AMoRE
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF POLYAMIDE DIMER (IMPYPYPYBETADP)2 BOUND TO CCAGATCTGG
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
10
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
10
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
10
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
9
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
9
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
9
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
8
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
8
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
7
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
7
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
7
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
6
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
6
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
A
DT
6
A
N3
DT
6
1_555
B
DA
5
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
6
A
O4
DT
6
1_555
B
DA
5
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N3
DC
7
1_555
B
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N4
DC
7
1_555
B
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
7
A
O2
DC
7
1_555
B
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
3
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
3
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
DC
2
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
DC
2
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
DC
2
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
1
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
1
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
1
B
N4
DC
1
1_555
DNA
IMIDAZOLE-PYRROLE POLYAMIDE, DOUBLE DRUG IN MINOR GROOVE, MINOR GROOVE RECOGNITION, DNA
1CVY
PDB
1
1CVY
1
10
1CVY
1
10
1CVY
A
1
1
10
1
10
1CVY
1
10
1CVY
B
1
1
10
BINDING SITE FOR RESIDUE IPY B 11
B
IPY
11
Software
14
BINDING SITE FOR RESIDUE IPY A 12
A
IPY
12
Software
15
A
DG
4
A
DG
4
14
1_555
A
DT
6
A
DT
6
14
4_565
A
IPY
12
C
IPY
14
1_555
A
HOH
54
E
HOH
14
1_555
A
HOH
59
E
HOH
14
2_574
B
DG
4
B
DG
4
14
1_555
B
DA
5
B
DA
5
14
1_555
B
DT
6
B
DT
6
14
1_555
B
DC
7
B
DC
7
14
1_555
B
DT
8
B
DT
8
14
1_555
B
DG
9
B
DG
9
14
1_555
B
HOH
41
F
HOH
14
1_655
B
HOH
52
F
HOH
14
1_555
B
HOH
53
F
HOH
14
1_555
A
DG
4
A
DG
4
15
1_555
A
DA
5
A
DA
5
15
1_555
A
DT
6
A
DT
6
15
1_555
A
DC
7
A
DC
7
15
1_555
A
DT
8
A
DT
8
15
1_555
A
DG
9
A
DG
9
15
1_555
A
HOH
28
E
HOH
15
1_555
A
HOH
54
E
HOH
15
1_555
A
HOH
63
E
HOH
15
1_555
A
HOH
64
E
HOH
15
1_555
A
HOH
67
E
HOH
15
1_555
B
DG
4
B
DG
4
15
1_555
B
DT
6
B
DT
6
15
4_475
B
IPY
11
D
IPY
15
1_555
B
HOH
53
F
HOH
15
1_555
19
orthorhombic
P 21 21 21