0.015873 0.009164 0.000000 0.000000 0.018329 0.000000 0.000000 0.000000 0.006557 0.00000 0.00000 0.00000 Tsutakawa, S.E. Jingami, H. Morikawa, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 63.000 63.000 152.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N MG N 394 N N N 395 S C N 396 N C N 397 N O N 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C N 405 N O N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N N N 418 S C N 419 N C N 420 N O N 421 N C N 422 N C N 423 N C N 424 N O N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 N C N 439 N O N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N N N 449 S C N 450 N C N 451 N O N 452 R C N 453 N O N 454 N C N 455 N O N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N N N 466 S C N 467 N C N 468 N O N 469 N C Y 470 N C Y 471 N C Y 472 N C Y 473 N N Y 474 N C Y 475 N C Y 476 N C Y 477 N C Y 478 N C N 479 N O N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N N N 493 S C N 494 N C N 495 N O N 496 N C Y 497 N C Y 498 N C Y 499 N C Y 500 N C Y 501 N C Y 502 N C N 503 N O N 504 N O N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N N N 517 S C N 518 N C N 519 N O N 520 N C N 521 N C N 522 N C N 523 N O N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub Y 471 N sing Y 472 N sing N 473 N sing Y 474 N sing Y 475 N doub N 476 N sing Y 477 N doub N 478 N sing Y 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N doub N 490 N sing N 491 N sing N 492 N sing N 493 N sing Y 494 N doub Y 495 N sing Y 496 N sing N 497 N sing Y 498 N doub N 499 N sing Y 500 N doub N 501 N sing Y 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N doub N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 99 615 623 10.1016/S0092-8674(00)81550-0 10612397 Recognition of a TG mismatch: the crystal structure of very short patch repair endonuclease in complex with a DNA duplex. 1999 10.2210/pdb1cw0/pdb pdb_00001cw0 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 IMAGE PLATE 1999-06-10 RIGAKU RAXIS SINGLE WAVELENGTH M x-ray 1 0.8340 1.0 BL24XU SPring-8 0.8340 SYNCHROTRON SPRING-8 BEAMLINE BL24XU 3638.379 DNA (5'-D(*AP*CP*GP*TP*AP*CP*CP*TP*GP*GP*CP*T)-3') 1 syn polymer 886.637 DNA (5'-D(*AP*GP*C)-3') 1 syn polymer 2770.834 DNA (5'-D(P*TP*AP*GP*GP*TP*AP*CP*GP*T)-3') 1 syn polymer 17914.473 PROTEIN (DNA MISMATCH ENDONUCLEASE) 3.1.-.- 1 man polymer 24.305 MAGNESIUM ION 2 syn non-polymer 65.409 ZINC ION 1 syn non-polymer 18.015 water 206 nat water VSR ENDONUCLEASE, PATCH REPAIR PROTEIN no no (DA)(DC)(DG)(DT)(DA)(DC)(DC)(DT)(DG)(DG)(DC)(DT) ACGTACCTGGCT M polydeoxyribonucleotide no no (DA)(DG)(DC) AGC N polydeoxyribonucleotide no no (DT)(DA)(DG)(DG)(DT)(DA)(DC)(DG)(DT) TAGGTACGT O polydeoxyribonucleotide no no ADVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPAT RTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEGASAQIDTQGIHLLA ADVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPAT RTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEGASAQIDTQGIHLLA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample 562 Escherichia coli 562 Escherichia coli 1 3.47 64.51 VAPOR DIFFUSION, HANGING DROP 5.60 pH 5.60, VAPOR DIFFUSION, HANGING DROP 6.221 1 20 M 301 O 362 5.396 M_DA301:DT362_O 1 -9.974 -0.079 0.211 -0.111 4.403 1 19 M 302 O 361 1.417 M_DC302:DG361_O 2 -8.266 0.173 -0.231 -0.038 -3.092 1 19 M 303 O 360 0.583 M_DG303:DC360_O 3 -5.571 -0.285 -0.114 -0.025 7.287 1 20 M 304 O 359 -0.358 M_DT304:DA359_O 4 -7.682 -0.042 -0.023 -0.060 -1.217 1 20 M 305 O 358 -0.028 M_DA305:DT358_O 5 -9.655 -0.007 -0.137 -0.165 -0.795 1 19 M 306 O 357 -1.440 M_DC306:DG357_O 6 -9.855 0.186 -0.010 -0.139 -13.001 1 19 M 307 O 356 0.249 M_DC307:DG356_O 7 1.016 0.176 0.352 -0.071 0.139 1 20 M 308 O 355 2.588 M_DT308:DA355_O 8 2.296 0.038 0.052 -0.141 -14.776 28 M 309 O 354 -1.034 M_DG309:DT354_O 9 -11.779 -2.503 -0.221 -0.492 -7.941 1 19 M 310 N 353 -0.526 M_DG310:DC353_N 10 -13.771 -0.130 -0.140 -0.072 -5.292 1 19 M 311 N 352 0.170 M_DC311:DG352_N 11 -3.204 0.078 -0.075 -0.080 -4.366 1 20 M 312 N 351 4.284 M_DT312:DA351_N 12 -12.782 0.013 -0.038 -0.132 3.204 33.347 M M 301 302 3.652 O O 362 361 3.275 2.092 -0.229 -0.519 MM_DA301DC302:DG361DT362_OO 1 3.079 -5.376 33.144 -1.249 0.907 3.534 37.103 M M 302 303 13.716 O O 361 360 3.476 8.651 -0.200 0.629 MM_DC302DG303:DC360DG361_OO 2 -1.350 2.140 36.090 -0.269 0.118 2.942 31.266 M M 303 304 7.968 O O 360 359 3.020 4.281 -0.235 -0.432 MM_DG303DT304:DA359DC360_OO 3 -1.152 2.145 30.957 -1.544 0.237 3.535 41.376 M M 304 305 8.204 O O 359 358 3.502 5.779 -0.072 0.487 MM_DT304DA305:DT358DA359_OO 4 0.630 -0.895 40.983 0.021 0.174 3.098 33.631 M M 305 306 11.161 O O 358 357 3.195 6.418 -0.087 -0.230 MM_DA305DC306:DG357DT358_OO 5 -1.658 2.884 32.990 -1.415 -0.112 3.712 38.640 M M 306 307 13.970 O O 357 356 3.638 9.156 1.489 0.367 MM_DC306DC307:DG356DG357_OO 6 2.507 -3.826 37.499 -0.732 -1.897 2.687 27.055 M M 307 308 36.716 O O 356 355 3.090 15.897 -0.162 0.550 MM_DC307DT308:DA355DG356_OO 7 6.486 -14.981 20.988 -2.857 1.992 2.935 39.108 M M 309 310 20.525 O N 354 353 3.211 13.418 -0.350 -0.323 MM_DG309DG310:DC353DT354_NO 8 -6.455 9.874 36.266 -2.060 -0.236 3.167 35.926 M M 310 311 8.892 N N 353 352 3.209 5.465 0.266 -0.047 MM_DG310DC311:DG352DC353_NN 9 -0.039 0.064 35.521 -0.841 -0.436 3.282 32.485 M M 311 312 3.476 N N 352 351 3.312 1.943 0.032 -0.406 MM_DC311DT312:DA351DG352_NN 10 0.837 -1.497 32.418 -1.070 0.090 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 1999-12-12 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 1999-08-25 REL REL MG MAGNESIUM ION ZN ZINC ION HOH water 1VSR TRUNCATED VSR MODEL, 1VSR PDB experimental model MG 202 5 MG MG 202 N ZN 201 6 ZN ZN 201 A MG 203 5 MG MG 203 A HOH 402 7 HOH HOH 402 M HOH 420 7 HOH HOH 420 M HOH 453 7 HOH HOH 453 M HOH 459 7 HOH HOH 459 M HOH 467 7 HOH HOH 467 M HOH 482 7 HOH HOH 482 M HOH 485 7 HOH HOH 485 M HOH 503 7 HOH HOH 503 M HOH 515 7 HOH HOH 515 M HOH 518 7 HOH HOH 518 M HOH 520 7 HOH HOH 520 M HOH 527 7 HOH HOH 527 M HOH 533 7 HOH HOH 533 M HOH 534 7 HOH HOH 534 M HOH 536 7 HOH HOH 536 M HOH 539 7 HOH HOH 539 M HOH 568 7 HOH HOH 568 M HOH 570 7 HOH HOH 570 M HOH 577 7 HOH HOH 577 M HOH 585 7 HOH HOH 585 M HOH 587 7 HOH HOH 587 M HOH 591 7 HOH HOH 591 M HOH 432 7 HOH HOH 432 N HOH 443 7 HOH HOH 443 N HOH 450 7 HOH HOH 450 N HOH 460 7 HOH HOH 460 N HOH 466 7 HOH HOH 466 N HOH 478 7 HOH HOH 478 N HOH 483 7 HOH HOH 483 N HOH 500 7 HOH HOH 500 N HOH 509 7 HOH HOH 509 N HOH 511 7 HOH HOH 511 N HOH 553 7 HOH HOH 553 N HOH 436 7 HOH HOH 436 O HOH 446 7 HOH HOH 446 O HOH 457 7 HOH HOH 457 O HOH 472 7 HOH HOH 472 O HOH 490 7 HOH HOH 490 O HOH 493 7 HOH HOH 493 O HOH 495 7 HOH HOH 495 O HOH 502 7 HOH HOH 502 O HOH 508 7 HOH HOH 508 O HOH 522 7 HOH HOH 522 O HOH 523 7 HOH HOH 523 O HOH 530 7 HOH HOH 530 O HOH 547 7 HOH HOH 547 O HOH 552 7 HOH HOH 552 O HOH 567 7 HOH HOH 567 O HOH 589 7 HOH HOH 589 O HOH 592 7 HOH HOH 592 O HOH 602 7 HOH HOH 602 O HOH 401 7 HOH HOH 401 A HOH 403 7 HOH HOH 403 A HOH 404 7 HOH HOH 404 A HOH 405 7 HOH HOH 405 A HOH 406 7 HOH HOH 406 A HOH 407 7 HOH HOH 407 A HOH 408 7 HOH HOH 408 A HOH 409 7 HOH HOH 409 A HOH 410 7 HOH HOH 410 A HOH 411 7 HOH HOH 411 A HOH 412 7 HOH HOH 412 A HOH 413 7 HOH HOH 413 A HOH 414 7 HOH HOH 414 A HOH 415 7 HOH HOH 415 A HOH 416 7 HOH HOH 416 A HOH 417 7 HOH HOH 417 A HOH 418 7 HOH HOH 418 A HOH 419 7 HOH HOH 419 A HOH 421 7 HOH HOH 421 A HOH 422 7 HOH HOH 422 A HOH 423 7 HOH HOH 423 A HOH 424 7 HOH HOH 424 A HOH 425 7 HOH HOH 425 A HOH 426 7 HOH HOH 426 A HOH 427 7 HOH HOH 427 A HOH 428 7 HOH HOH 428 A HOH 429 7 HOH HOH 429 A HOH 430 7 HOH HOH 430 A HOH 431 7 HOH HOH 431 A HOH 433 7 HOH HOH 433 A HOH 434 7 HOH HOH 434 A HOH 435 7 HOH HOH 435 A HOH 437 7 HOH HOH 437 A HOH 438 7 HOH HOH 438 A HOH 439 7 HOH HOH 439 A HOH 440 7 HOH HOH 440 A HOH 441 7 HOH HOH 441 A HOH 442 7 HOH HOH 442 A HOH 444 7 HOH HOH 444 A HOH 445 7 HOH HOH 445 A HOH 447 7 HOH HOH 447 A HOH 448 7 HOH HOH 448 A HOH 449 7 HOH HOH 449 A HOH 451 7 HOH HOH 451 A HOH 452 7 HOH HOH 452 A HOH 454 7 HOH HOH 454 A HOH 455 7 HOH HOH 455 A HOH 456 7 HOH HOH 456 A HOH 458 7 HOH HOH 458 A HOH 461 7 HOH HOH 461 A HOH 462 7 HOH HOH 462 A HOH 463 7 HOH HOH 463 A HOH 464 7 HOH HOH 464 A HOH 465 7 HOH HOH 465 A HOH 468 7 HOH HOH 468 A HOH 469 7 HOH HOH 469 A HOH 470 7 HOH HOH 470 A HOH 471 7 HOH HOH 471 A HOH 473 7 HOH HOH 473 A HOH 474 7 HOH HOH 474 A HOH 475 7 HOH HOH 475 A HOH 476 7 HOH HOH 476 A HOH 477 7 HOH HOH 477 A HOH 479 7 HOH HOH 479 A HOH 480 7 HOH HOH 480 A HOH 481 7 HOH HOH 481 A HOH 484 7 HOH HOH 484 A HOH 486 7 HOH HOH 486 A HOH 487 7 HOH HOH 487 A HOH 488 7 HOH HOH 488 A HOH 489 7 HOH HOH 489 A HOH 491 7 HOH HOH 491 A HOH 492 7 HOH HOH 492 A HOH 494 7 HOH HOH 494 A HOH 496 7 HOH HOH 496 A HOH 497 7 HOH HOH 497 A HOH 498 7 HOH HOH 498 A HOH 499 7 HOH HOH 499 A HOH 501 7 HOH HOH 501 A HOH 504 7 HOH HOH 504 A HOH 505 7 HOH HOH 505 A HOH 506 7 HOH HOH 506 A HOH 507 7 HOH HOH 507 A HOH 510 7 HOH HOH 510 A HOH 512 7 HOH HOH 512 A HOH 513 7 HOH HOH 513 A HOH 514 7 HOH HOH 514 A HOH 516 7 HOH HOH 516 A HOH 517 7 HOH HOH 517 A HOH 519 7 HOH HOH 519 A HOH 521 7 HOH HOH 521 A HOH 524 7 HOH HOH 524 A HOH 525 7 HOH HOH 525 A HOH 526 7 HOH HOH 526 A HOH 528 7 HOH HOH 528 A HOH 529 7 HOH HOH 529 A HOH 531 7 HOH HOH 531 A HOH 532 7 HOH HOH 532 A HOH 535 7 HOH HOH 535 A HOH 537 7 HOH HOH 537 A HOH 538 7 HOH HOH 538 A HOH 540 7 HOH HOH 540 A HOH 541 7 HOH HOH 541 A HOH 542 7 HOH HOH 542 A HOH 543 7 HOH HOH 543 A HOH 544 7 HOH HOH 544 A HOH 545 7 HOH HOH 545 A HOH 546 7 HOH HOH 546 A HOH 548 7 HOH HOH 548 A HOH 549 7 HOH HOH 549 A HOH 550 7 HOH HOH 550 A HOH 551 7 HOH HOH 551 A HOH 554 7 HOH HOH 554 A HOH 555 7 HOH HOH 555 A HOH 556 7 HOH HOH 556 A HOH 557 7 HOH HOH 557 A HOH 558 7 HOH HOH 558 A HOH 559 7 HOH HOH 559 A HOH 560 7 HOH HOH 560 A HOH 561 7 HOH HOH 561 A HOH 562 7 HOH HOH 562 A HOH 563 7 HOH HOH 563 A HOH 564 7 HOH HOH 564 A HOH 565 7 HOH HOH 565 A HOH 566 7 HOH HOH 566 A HOH 569 7 HOH HOH 569 A HOH 571 7 HOH HOH 571 A HOH 572 7 HOH HOH 572 A HOH 573 7 HOH HOH 573 A HOH 574 7 HOH HOH 574 A HOH 575 7 HOH HOH 575 A HOH 576 7 HOH HOH 576 A HOH 578 7 HOH HOH 578 A HOH 579 7 HOH HOH 579 A HOH 580 7 HOH HOH 580 A HOH 581 7 HOH HOH 581 A HOH 582 7 HOH HOH 582 A HOH 583 7 HOH HOH 583 A HOH 584 7 HOH HOH 584 A HOH 586 7 HOH HOH 586 A HOH 588 7 HOH HOH 588 A HOH 590 7 HOH HOH 590 A HOH 593 7 HOH HOH 593 A HOH 594 7 HOH HOH 594 A HOH 595 7 HOH HOH 595 A HOH 596 7 HOH HOH 596 A HOH 597 7 HOH HOH 597 A HOH 598 7 HOH HOH 598 A HOH 599 7 HOH HOH 599 A HOH 600 7 HOH HOH 600 A HOH 601 7 HOH HOH 601 A HOH 603 7 HOH HOH 603 A HOH 604 7 HOH HOH 604 A HOH 605 7 HOH HOH 605 A HOH 606 7 HOH HOH 606 A A 301 n 1 DA 301 M C 302 n 2 DC 302 M G 303 n 3 DG 303 M T 304 n 4 DT 304 M A 305 n 5 DA 305 M C 306 n 6 DC 306 M C 307 n 7 DC 307 M T 308 n 8 DT 308 M G 309 n 9 DG 309 M G 310 n 10 DG 310 M C 311 n 11 DC 311 M T 312 n 12 DT 312 M A 351 n 1 DA 351 N G 352 n 2 DG 352 N C 353 n 3 DC 353 N T 354 n 1 DT 354 O A 355 n 2 DA 355 O G 356 n 3 DG 356 O G 357 n 4 DG 357 O T 358 n 5 DT 358 O A 359 n 6 DA 359 O C 360 n 7 DC 360 O G 361 n 8 DG 361 O T 362 n 9 DT 362 O ALA 2 n 1 ALA 2 A ASP 3 n 2 ASP 3 A VAL 4 n 3 VAL 4 A HIS 5 n 4 HIS 5 A ASP 6 n 5 ASP 6 A LYS 7 n 6 LYS 7 A ALA 8 n 7 ALA 8 A THR 9 n 8 THR 9 A ARG 10 n 9 ARG 10 A SER 11 n 10 SER 11 A LYS 12 n 11 LYS 12 A ASN 13 n 12 ASN 13 A MET 14 n 13 MET 14 A ARG 15 n 14 ARG 15 A ALA 16 n 15 ALA 16 A ILE 17 n 16 ILE 17 A ALA 18 n 17 ALA 18 A THR 19 n 18 THR 19 A ARG 20 n 19 ARG 20 A ASP 21 n 20 ASP 21 A THR 22 n 21 THR 22 A ALA 23 n 22 ALA 23 A ILE 24 n 23 ILE 24 A GLU 25 n 24 GLU 25 A LYS 26 n 25 LYS 26 A ARG 27 n 26 ARG 27 A LEU 28 n 27 LEU 28 A ALA 29 n 28 ALA 29 A SER 30 n 29 SER 30 A LEU 31 n 30 LEU 31 A LEU 32 n 31 LEU 32 A THR 33 n 32 THR 33 A GLY 34 n 33 GLY 34 A GLN 35 n 34 GLN 35 A GLY 36 n 35 GLY 36 A LEU 37 n 36 LEU 37 A ALA 38 n 37 ALA 38 A PHE 39 n 38 PHE 39 A ARG 40 n 39 ARG 40 A VAL 41 n 40 VAL 41 A GLN 42 n 41 GLN 42 A ASP 43 n 42 ASP 43 A ALA 44 n 43 ALA 44 A SER 45 n 44 SER 45 A LEU 46 n 45 LEU 46 A PRO 47 n 46 PRO 47 A GLY 48 n 47 GLY 48 A ARG 49 n 48 ARG 49 A PRO 50 n 49 PRO 50 A ASP 51 n 50 ASP 51 A PHE 52 n 51 PHE 52 A VAL 53 n 52 VAL 53 A VAL 54 n 53 VAL 54 A ASP 55 n 54 ASP 55 A GLU 56 n 55 GLU 56 A TYR 57 n 56 TYR 57 A ARG 58 n 57 ARG 58 A CYS 59 n 58 CYS 59 A VAL 60 n 59 VAL 60 A ILE 61 n 60 ILE 61 A PHE 62 n 61 PHE 62 A THR 63 n 62 THR 63 A HIS 64 n 63 HIS 64 A GLY 65 n 64 GLY 65 A CYS 66 n 65 CYS 66 A PHE 67 n 66 PHE 67 A TRP 68 n 67 TRP 68 A HIS 69 n 68 HIS 69 A HIS 70 n 69 HIS 70 A HIS 71 n 70 HIS 71 A HIS 72 n 71 HIS 72 A CYS 73 n 72 CYS 73 A TYR 74 n 73 TYR 74 A LEU 75 n 74 LEU 75 A PHE 76 n 75 PHE 76 A LYS 77 n 76 LYS 77 A VAL 78 n 77 VAL 78 A PRO 79 n 78 PRO 79 A ALA 80 n 79 ALA 80 A THR 81 n 80 THR 81 A ARG 82 n 81 ARG 82 A THR 83 n 82 THR 83 A GLU 84 n 83 GLU 84 A PHE 85 n 84 PHE 85 A TRP 86 n 85 TRP 86 A LEU 87 n 86 LEU 87 A GLU 88 n 87 GLU 88 A LYS 89 n 88 LYS 89 A ILE 90 n 89 ILE 90 A GLY 91 n 90 GLY 91 A LYS 92 n 91 LYS 92 A ASN 93 n 92 ASN 93 A VAL 94 n 93 VAL 94 A GLU 95 n 94 GLU 95 A ARG 96 n 95 ARG 96 A ASP 97 n 96 ASP 97 A ARG 98 n 97 ARG 98 A ARG 99 n 98 ARG 99 A ASP 100 n 99 ASP 100 A ILE 101 n 100 ILE 101 A SER 102 n 101 SER 102 A ARG 103 n 102 ARG 103 A LEU 104 n 103 LEU 104 A GLN 105 n 104 GLN 105 A GLU 106 n 105 GLU 106 A LEU 107 n 106 LEU 107 A GLY 108 n 107 GLY 108 A TRP 109 n 108 TRP 109 A ARG 110 n 109 ARG 110 A VAL 111 n 110 VAL 111 A LEU 112 n 111 LEU 112 A ILE 113 n 112 ILE 113 A VAL 114 n 113 VAL 114 A TRP 115 n 114 TRP 115 A GLU 116 n 115 GLU 116 A CYS 117 n 116 CYS 117 A ALA 118 n 117 ALA 118 A LEU 119 n 118 LEU 119 A ARG 120 n 119 ARG 120 A GLY 121 n 120 GLY 121 A ARG 122 n 121 ARG 122 A GLU 123 n 122 GLU 123 A LYS 124 n 123 LYS 124 A LEU 125 n 124 LEU 125 A THR 126 n 125 THR 126 A ASP 127 n 126 ASP 127 A GLU 128 n 127 GLU 128 A ALA 129 n 128 ALA 129 A LEU 130 n 129 LEU 130 A THR 131 n 130 THR 131 A GLU 132 n 131 GLU 132 A ARG 133 n 132 ARG 133 A LEU 134 n 133 LEU 134 A GLU 135 n 134 GLU 135 A GLU 136 n 135 GLU 136 A TRP 137 n 136 TRP 137 A ILE 138 n 137 ILE 138 A CYS 139 n 138 CYS 139 A GLY 140 n 139 GLY 140 A GLU 141 n 140 GLU 141 A GLY 142 n 141 GLY 142 A ALA 143 n 142 ALA 143 A SER 144 n 143 SER 144 A ALA 145 n 144 ALA 145 A GLN 146 n 145 GLN 146 A ILE 147 n 146 ILE 147 A ASP 148 n 147 ASP 148 A THR 149 n 148 THR 149 A GLN 150 n 149 GLN 150 A GLY 151 n 150 GLY 151 A ILE 152 n 151 ILE 152 A HIS 153 n 152 HIS 153 A LEU 154 n 153 LEU 154 A LEU 155 n 154 LEU 155 A ALA 156 n 155 ALA 156 A author_defined_assembly 4 tetrameric N DC 353 B O3' DC 3 1_555 N MG 202 E MG MG 1_555 O DT 354 C OP3 DT 1 1_555 77.0 N DC 353 B O3' DC 3 1_555 N MG 202 E MG MG 1_555 A ASP 51 D OD1 ASP 50 1_555 154.7 O DT 354 C OP3 DT 1 1_555 N MG 202 E MG MG 1_555 A ASP 51 D OD1 ASP 50 1_555 85.4 N DC 353 B O3' DC 3 1_555 N MG 202 E MG MG 1_555 A HOH 496 K O HOH 1_555 85.8 O DT 354 C OP3 DT 1 1_555 N MG 202 E MG MG 1_555 A HOH 496 K O HOH 1_555 86.5 A ASP 51 D OD1 ASP 50 1_555 N MG 202 E MG MG 1_555 A HOH 496 K O HOH 1_555 75.0 N DC 353 B O3' DC 3 1_555 N MG 202 E MG MG 1_555 A HOH 498 K O HOH 1_555 95.0 O DT 354 C OP3 DT 1 1_555 N MG 202 E MG MG 1_555 A HOH 498 K O HOH 1_555 170.6 A ASP 51 D OD1 ASP 50 1_555 N MG 202 E MG MG 1_555 A HOH 498 K O HOH 1_555 100.5 A HOH 496 K O HOH 1_555 N MG 202 E MG MG 1_555 A HOH 498 K O HOH 1_555 87.9 N DC 353 B O3' DC 3 1_555 N MG 202 E MG MG 1_555 A HOH 596 K O HOH 1_555 100.6 O DT 354 C OP3 DT 1 1_555 N MG 202 E MG MG 1_555 A HOH 596 K O HOH 1_555 87.3 A ASP 51 D OD1 ASP 50 1_555 N MG 202 E MG MG 1_555 A HOH 596 K O HOH 1_555 96.5 A HOH 496 K O HOH 1_555 N MG 202 E MG MG 1_555 A HOH 596 K O HOH 1_555 169.9 A HOH 498 K O HOH 1_555 N MG 202 E MG MG 1_555 A HOH 596 K O HOH 1_555 99.2 O DT 354 C OP2 DT 1 1_555 A MG 203 G MG MG 1_555 O DT 354 C OP3 DT 1 1_555 65.8 O DT 354 C OP2 DT 1 1_555 A MG 203 G MG MG 1_555 O HOH 495 J O HOH 1_555 92.6 O DT 354 C OP3 DT 1 1_555 A MG 203 G MG MG 1_555 O HOH 495 J O HOH 1_555 98.0 O DT 354 C OP2 DT 1 1_555 A MG 203 G MG MG 1_555 A ASP 51 D OD2 ASP 50 1_555 170.3 O DT 354 C OP3 DT 1 1_555 A MG 203 G MG MG 1_555 A ASP 51 D OD2 ASP 50 1_555 104.5 O HOH 495 J O HOH 1_555 A MG 203 G MG MG 1_555 A ASP 51 D OD2 ASP 50 1_555 90.0 O DT 354 C OP2 DT 1 1_555 A MG 203 G MG MG 1_555 A THR 63 D O THR 62 1_555 98.1 O DT 354 C OP3 DT 1 1_555 A MG 203 G MG MG 1_555 A THR 63 D O THR 62 1_555 163.9 O HOH 495 J O HOH 1_555 A MG 203 G MG MG 1_555 A THR 63 D O THR 62 1_555 81.7 A ASP 51 D OD2 ASP 50 1_555 A MG 203 G MG MG 1_555 A THR 63 D O THR 62 1_555 91.6 O DT 354 C OP2 DT 1 1_555 A MG 203 G MG MG 1_555 A HOH 494 K O HOH 1_555 88.3 O DT 354 C OP3 DT 1 1_555 A MG 203 G MG MG 1_555 A HOH 494 K O HOH 1_555 89.1 O HOH 495 J O HOH 1_555 A MG 203 G MG MG 1_555 A HOH 494 K O HOH 1_555 172.6 A ASP 51 D OD2 ASP 50 1_555 A MG 203 G MG MG 1_555 A HOH 494 K O HOH 1_555 90.3 A THR 63 D O THR 62 1_555 A MG 203 G MG MG 1_555 A HOH 494 K O HOH 1_555 90.9 A CYS 66 D SG CYS 65 1_555 A ZN 201 F ZN ZN 1_555 A HIS 71 D ND1 HIS 70 1_555 109.9 A CYS 66 D SG CYS 65 1_555 A ZN 201 F ZN ZN 1_555 A CYS 73 D SG CYS 72 1_555 114.9 A HIS 71 D ND1 HIS 70 1_555 A ZN 201 F ZN ZN 1_555 A CYS 73 D SG CYS 72 1_555 107.1 A CYS 66 D SG CYS 65 1_555 A ZN 201 F ZN ZN 1_555 A CYS 117 D SG CYS 116 1_555 106.6 A HIS 71 D ND1 HIS 70 1_555 A ZN 201 F ZN ZN 1_555 A CYS 117 D SG CYS 116 1_555 100.2 A CYS 73 D SG CYS 72 1_555 A ZN 201 F ZN ZN 1_555 A CYS 117 D SG CYS 116 1_555 117.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 40 D N ARG 39 A O VAL 53 D O VAL 52 A N VAL 54 D N VAL 53 A O CYS 59 D O CYS 58 A N VAL 60 D N VAL 59 A O ARG 110 D O ARG 109 A N ILE 113 D N ILE 112 A O ALA 145 D O ALA 144 A N ASP 148 D N ASP 147 A O GLY 151 D O GLY 150 1 A CB LYS 77 D CB LYS 76 0 Y 1 A CG LYS 77 D CG LYS 76 0 Y 1 A CD LYS 77 D CD LYS 76 0 Y 1 A CE LYS 77 D CE LYS 76 0 Y 1 A NZ LYS 77 D NZ LYS 76 0 Y 1 A CB GLU 106 D CB GLU 105 0 Y 1 A CG GLU 106 D CG GLU 105 0 Y 1 A CD GLU 106 D CD GLU 105 0 Y 1 A OE1 GLU 106 D OE1 GLU 105 0 Y 1 A OE2 GLU 106 D OE2 GLU 105 0 Y 1 A ARG 27 0.103 SIDE CHAIN 1 A ARG 49 0.281 SIDE CHAIN 1 A ARG 58 0.153 SIDE CHAIN 1 A ARG 82 0.124 SIDE CHAIN 1 A ARG 98 0.112 SIDE CHAIN 1 A ARG 103 0.119 SIDE CHAIN 1 A ARG 120 0.113 SIDE CHAIN 1 A ARG 49 43.59 71.37 1 A ARG 58 38.95 54.41 1 A HIS 70 48.63 70.75 1 A ASP 148 -123.44 -162.53 PROTEIN-ALLHDG.PARAM PROTEIN-ALLHDG.TOP DNA-RNA-ALLATOM.PARAM DNA-RNA-ALLATOM.TOP 31.8 2.87 5.97 0.00 2.87 0.00 -5.74 0.2300000 0.008 0.2040000 0.2040000 2.30 22.0 753 14332 5.000 94.3 RANDOM 1 RESTRAINED THROUGHOUT 2.000 TRUNCATED VSR MODEL, 1VSR ENGH & HUBER FLAT MODEL 50.36 0.322 0.30 0.26 5.00 0.23 0.23 2.30 22.0 206 1957 3 488 1260 0.011 1.1 24.3 0.86 1.18 1.50 1.85 2.00 1.82 2.00 2.64 2.50 0.2800000 0.026 0.2430000 2.44 116 2384 6 4.6 98.7 28.5 2.300 24.254 1CW0 15166 -3.000 0.0590000 1 14.4000 4.600 99.8 0.3160000 2.30 2.38 4.60 100.0 phasing AMoRE refinement CNS data reduction DENZO data scaling SCALEPACK CRYSTAL STRUCTURE ANALYSIS OF VERY SHORT PATCH REPAIR (VSR) ENDONUCLEASE IN COMPLEX WITH A DUPLEX DNA 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 5 N N 7 N N 7 N N 7 N N 7 N N A ASP 6 D ASP 5 HELX_P A ILE 17 D ILE 16 1 1 12 A THR 22 D THR 21 HELX_P A GLN 35 D GLN 34 1 2 14 A ASP 55 D ASP 54 HELX_P A TYR 57 D TYR 56 5 3 3 A ARG 82 D ARG 81 HELX_P A LEU 107 D LEU 106 1 4 26 A GLU 116 D GLU 115 HELX_P A ARG 120 D ARG 119 1 5 5 A THR 126 D THR 125 HELX_P A GLY 140 D GLY 139 1 6 15 metalc 2.272 N MG 202 E MG MG 1_555 N DC 353 B O3' DC 3 1_555 metalc 2.206 N MG 202 E MG MG 1_555 O DT 354 C OP3 DT 1 1_555 metalc 2.372 N MG 202 E MG MG 1_555 A ASP 51 D OD1 ASP 50 1_555 metalc 2.333 N MG 202 E MG MG 1_555 A HOH 496 K O HOH 1_555 metalc 2.007 N MG 202 E MG MG 1_555 A HOH 498 K O HOH 1_555 metalc 1.931 N MG 202 E MG MG 1_555 A HOH 596 K O HOH 1_555 metalc 2.314 O DT 354 C OP2 DT 1 1_555 A MG 203 G MG MG 1_555 metalc 2.287 O DT 354 C OP3 DT 1 1_555 A MG 203 G MG MG 1_555 metalc 2.059 O HOH 495 J O HOH 1_555 A MG 203 G MG MG 1_555 metalc 2.376 A ASP 51 D OD2 ASP 50 1_555 A MG 203 G MG MG 1_555 metalc 2.282 A THR 63 D O THR 62 1_555 A MG 203 G MG MG 1_555 metalc 2.295 A CYS 66 D SG CYS 65 1_555 A ZN 201 F ZN ZN 1_555 metalc 1.942 A HIS 71 D ND1 HIS 70 1_555 A ZN 201 F ZN ZN 1_555 metalc 2.350 A CYS 73 D SG CYS 72 1_555 A ZN 201 F ZN ZN 1_555 metalc 2.430 A CYS 117 D SG CYS 116 1_555 A ZN 201 F ZN ZN 1_555 metalc 2.059 A MG 203 G MG MG 1_555 A HOH 494 K O HOH 1_555 hydrog WATSON-CRICK M DA 301 A N1 DA 1 1_555 O DT 362 C N3 DT 9 1_555 hydrog WATSON-CRICK M DA 301 A N6 DA 1 1_555 O DT 362 C O4 DT 9 1_555 hydrog WATSON-CRICK M DC 302 A N3 DC 2 1_555 O DG 361 C N1 DG 8 1_555 hydrog WATSON-CRICK M DC 302 A N4 DC 2 1_555 O DG 361 C O6 DG 8 1_555 hydrog WATSON-CRICK M DC 302 A O2 DC 2 1_555 O DG 361 C N2 DG 8 1_555 hydrog WATSON-CRICK M DG 303 A N1 DG 3 1_555 O DC 360 C N3 DC 7 1_555 hydrog WATSON-CRICK M DG 303 A N2 DG 3 1_555 O DC 360 C O2 DC 7 1_555 hydrog WATSON-CRICK M DG 303 A O6 DG 3 1_555 O DC 360 C N4 DC 7 1_555 hydrog WATSON-CRICK M DT 304 A N3 DT 4 1_555 O DA 359 C N1 DA 6 1_555 hydrog WATSON-CRICK M DT 304 A O4 DT 4 1_555 O DA 359 C N6 DA 6 1_555 hydrog WATSON-CRICK M DA 305 A N1 DA 5 1_555 O DT 358 C N3 DT 5 1_555 hydrog WATSON-CRICK M DA 305 A N6 DA 5 1_555 O DT 358 C O4 DT 5 1_555 hydrog WATSON-CRICK M DC 306 A N3 DC 6 1_555 O DG 357 C N1 DG 4 1_555 hydrog WATSON-CRICK M DC 306 A N4 DC 6 1_555 O DG 357 C O6 DG 4 1_555 hydrog WATSON-CRICK M DC 306 A O2 DC 6 1_555 O DG 357 C N2 DG 4 1_555 hydrog WATSON-CRICK M DC 307 A N3 DC 7 1_555 O DG 356 C N1 DG 3 1_555 hydrog WATSON-CRICK M DC 307 A N4 DC 7 1_555 O DG 356 C O6 DG 3 1_555 hydrog WATSON-CRICK M DC 307 A O2 DC 7 1_555 O DG 356 C N2 DG 3 1_555 hydrog WATSON-CRICK M DT 308 A N3 DT 8 1_555 O DA 355 C N1 DA 2 1_555 hydrog WATSON-CRICK M DT 308 A O4 DT 8 1_555 O DA 355 C N6 DA 2 1_555 hydrog TYPE_28_PAIR M DG 309 A N1 DG 9 1_555 O DT 354 C O2 DT 1 1_555 hydrog TYPE_28_PAIR M DG 309 A O6 DG 9 1_555 O DT 354 C N3 DT 1 1_555 hydrog WATSON-CRICK M DG 310 A N1 DG 10 1_555 N DC 353 B N3 DC 3 1_555 hydrog WATSON-CRICK M DG 310 A N2 DG 10 1_555 N DC 353 B O2 DC 3 1_555 hydrog WATSON-CRICK M DG 310 A O6 DG 10 1_555 N DC 353 B N4 DC 3 1_555 hydrog WATSON-CRICK M DC 311 A N3 DC 11 1_555 N DG 352 B N1 DG 2 1_555 hydrog WATSON-CRICK M DC 311 A N4 DC 11 1_555 N DG 352 B O6 DG 2 1_555 hydrog WATSON-CRICK M DC 311 A O2 DC 11 1_555 N DG 352 B N2 DG 2 1_555 hydrog WATSON-CRICK M DT 312 A N3 DT 12 1_555 N DA 351 B N1 DA 1 1_555 hydrog WATSON-CRICK M DT 312 A O4 DT 12 1_555 N DA 351 B N6 DA 1 1_555 HYDROLASE/DNA PROTEIN-DNA COMPLEX, MISMATCH, INTERCALATION, ZINC, HYDROLASE/DNA, HYDROLASE-DNA complex VSR_ECOLI UNP 4 P09184 1CW0 PDB 1 1CW0 1CW0 PDB 2 1CW0 1CW0 PDB 3 1CW0 1 155 1CW0 2 156 P09184 A 1 1 155 301 312 1CW0 301 312 1CW0 M 2 1 12 351 353 1CW0 351 353 1CW0 N 3 1 3 354 362 1CW0 354 362 1CW0 O 4 1 9 6 anti-parallel anti-parallel parallel parallel anti-parallel A ARG 40 D ARG 39 A VAL 41 D VAL 40 A PHE 52 D PHE 51 A VAL 54 D VAL 53 A CYS 59 D CYS 58 A HIS 64 D HIS 63 A ARG 110 D ARG 109 A TRP 115 D TRP 114 A ALA 145 D ALA 144 A ASP 148 D ASP 147 A GLY 151 D GLY 150 A LEU 154 D LEU 153 BINDING SITE FOR RESIDUE ZN A 201 A ZN 201 Software 4 BINDING SITE FOR RESIDUE MG N 202 N MG 202 Software 7 BINDING SITE FOR RESIDUE MG A 203 A MG 203 Software 5 A CYS 66 D CYS 65 4 1_555 A HIS 71 D HIS 70 4 1_555 A CYS 73 D CYS 72 4 1_555 A CYS 117 D CYS 116 4 1_555 A ARG 49 D ARG 48 7 1_555 A ASP 51 D ASP 50 7 1_555 A HOH 496 K HOH 7 1_555 A HOH 498 K HOH 7 1_555 A HOH 596 K HOH 7 1_555 N DC 353 B DC 3 7 1_555 O DT 354 C DT 1 7 1_555 A ASP 51 D ASP 50 5 1_555 A THR 63 D THR 62 5 1_555 A HOH 494 K HOH 5 1_555 O DT 354 C DT 1 5 1_555 O HOH 495 J HOH 5 1_555 170 hexagonal P 65