0.029040
0.000000
0.000000
0.000000
0.023159
0.000000
0.000000
0.000000
0.013810
0.00000
0.00000
0.00000
van Aalten, D.M.F.
Erlanson, D.A.
Verdine, G.L.
Joshua-Tor, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
34.435
43.180
72.412
Ca 2
40.078
CALCIUM ION
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C12 H18 N5 O7 P S
407.339
n
N2-ETHANETHIOL-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
CA
N
2
N
O
N
3
N
P
N
4
N
O
N
5
N
O
N
6
N
O
N
7
N
C
N
8
R
C
N
9
N
O
N
10
S
C
N
11
N
O
N
12
N
C
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
N
C
N
49
R
C
N
50
N
N
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
C
N
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
P
N
74
N
O
N
75
N
O
N
76
N
O
N
77
N
C
N
78
R
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
N
C
N
83
R
C
Y
84
N
N
Y
85
N
C
Y
86
N
N
Y
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
C
N
92
N
N
N
93
N
N
Y
94
N
C
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
O
N
110
N
P
N
111
N
O
N
112
N
O
N
113
N
O
N
114
N
C
N
115
R
C
N
116
N
O
N
117
S
C
N
118
N
O
N
119
N
C
N
120
R
C
N
121
N
N
N
122
N
C
N
123
N
O
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
P
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
C
N
151
R
C
N
152
N
O
N
153
S
C
N
154
N
O
N
155
N
C
N
156
R
C
Y
157
N
N
Y
158
N
C
Y
159
N
N
Y
160
N
C
N
161
N
C
N
162
N
O
N
163
N
N
N
164
N
C
N
165
N
N
N
166
N
N
Y
167
N
C
N
168
N
C
N
169
N
C
N
170
N
S
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
O
N
190
N
H
N
191
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
sing
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
doub
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
96
11809
11814
10.1073/pnas.96.21.11809
10518532
A structural snapshot of base-pair opening in DNA.
1999
10.2210/pdb1cw9/pdb
pdb_00001cw9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1998-03-02
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.0800
1.0
X26C
NSLS
1.0800
SYNCHROTRON
NSLS BEAMLINE X26C
3106.110
5'-D(*CP*CP*AP*GP*(G47)P*CP*CP*TP*GP*G)-3'
4
syn
polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
271
nat
water
no
yes
(DC)(DC)(DA)(DG)(G47)(DC)(DC)(DT)(DG)(DG)
CCAGGCCTGG
A,B,C,D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
1
2.13
45.
VAPOR DIFFUSION, HANGING DROP
7.0
MPD, CALCIUM CHLORIDE, SODIUM CHLORIDE, SPERMINE TETRACHLORIDE, SODIUM CACODYLATE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
CACL2
1
NACL
1
SPERMINE
1
SODIUM CACODYLATE
1
MPD
1
MPD
2
-2.554
1
19
A
1
B
10
1.920
A_DC1:DG10_B
1
-15.186
0.199
0.186
-0.138
1.111
1
19
A
2
B
9
-0.466
A_DC2:DG9_B
2
-8.912
0.262
0.025
-0.109
2.958
1
20
A
3
B
8
0.982
A_DA3:DT8_B
3
-5.269
0.027
0.329
-0.016
11.999
1
19
A
4
B
7
-1.080
A_DG4:DC7_B
4
-6.704
-0.085
0.331
-0.177
0.860
1
19
A
5
B
6
3.018
A_G475:DC6_B
5
-15.214
-0.452
0.294
-0.085
-2.401
1
19
A
6
B
5
1.213
A_DC6:G475_B
6
-8.750
0.343
0.273
-0.110
-12.779
1
19
A
7
B
4
-2.503
A_DC7:DG4_B
7
-8.194
0.143
0.468
-0.123
-1.558
1
20
A
8
B
3
-1.130
A_DT8:DA3_B
8
-6.799
-0.030
0.119
-0.089
-4.843
1
19
A
9
B
2
1.381
A_DG9:DC2_B
9
-15.199
-0.289
0.078
-0.119
1.602
1
19
A
10
B
1
1.486
A_DG10:DC1_B
10
-18.142
-0.137
0.174
-0.157
-7.445
1
19
C
1
D
10
0.520
C_DC1:DG10_D
11
-11.540
0.082
0.226
-0.137
2.444
1
19
C
2
D
9
-0.983
C_DC2:DG9_D
12
-8.081
0.200
-0.068
-0.159
4.393
1
20
C
3
D
8
-2.085
C_DA3:DT8_D
13
-8.323
0.124
0.167
-0.139
8.521
1
19
C
4
D
7
0.224
C_DG4:DC7_D
14
-11.911
-0.172
0.373
-0.175
4.770
1
19
C
5
D
6
0.582
C_G475:DC6_D
15
-7.001
-0.208
0.344
-0.126
6.150
C
6
D
5
56.064
C_DC6:G475_D
16
-32.191
1.676
0.533
2.570
-11.194
1
19
C
7
D
4
-0.632
C_DC7:DG4_D
17
-8.217
0.184
0.312
-0.096
-6.728
1
20
C
8
D
3
1.748
C_DT8:DA3_D
18
-10.293
-0.017
0.229
-0.159
-5.381
1
19
C
9
D
2
-0.620
C_DG9:DC2_D
19
-9.394
-0.285
0.075
-0.133
5.620
1
19
C
10
D
1
2.490
C_DG10:DC1_D
20
-12.557
-0.142
0.244
-0.070
3.562
41.012
A
A
1
2
5.440
B
B
10
9
3.394
3.786
0.208
2.233
AA_DC1DC2:DG9DG10_BB
1
7.548
-10.845
40.170
2.744
0.588
3.006
45.525
A
A
2
3
-5.423
B
B
9
8
3.264
-4.188
0.033
2.707
AA_DC2DA3:DT8DG9_BB
2
-3.229
4.181
45.233
3.852
-0.315
3.204
24.460
A
A
3
4
12.537
B
B
8
7
3.158
5.269
0.412
0.646
AA_DA3DG4:DC7DT8_BB
3
-0.985
2.344
23.874
-0.088
-1.274
3.571
41.186
A
A
4
5
2.315
B
B
7
6
3.563
1.628
-0.081
0.239
AA_DG4G475:DC6DC7_BB
4
-1.111
1.579
41.141
0.148
-0.016
3.417
35.708
A
A
5
6
8.953
B
B
6
5
3.468
5.469
-0.069
-0.067
AA_G475DC6:G475DC6_BB
5
0.920
-1.505
35.289
-0.946
0.254
3.502
45.481
A
A
6
7
-4.845
B
B
5
4
3.604
-3.742
-0.046
1.160
AA_DC6DC7:DG4G475_BB
6
-1.346
1.743
45.316
1.860
-0.070
3.084
24.638
A
A
7
8
9.980
B
B
4
3
3.079
4.229
-0.432
0.683
AA_DC7DT8:DA3DG4_BB
7
2.738
-6.461
24.125
0.367
1.811
2.938
50.513
A
A
8
9
-7.242
B
B
3
2
3.310
-6.166
-0.006
3.053
AA_DT8DG9:DC2DA3_BB
8
1.371
-1.610
50.142
3.997
0.100
3.245
34.635
A
A
9
10
11.540
B
B
2
1
3.210
6.814
0.686
0.983
AA_DG9DG10:DC1DC2_BB
9
-3.865
6.546
33.764
0.602
-1.747
3.032
30.008
C
C
1
2
16.814
D
D
10
9
3.079
8.552
-0.199
0.530
CC_DC1DC2:DG9DG10_DD
10
4.869
-9.573
28.383
-0.669
1.348
2.954
50.573
C
C
2
3
-6.928
D
D
9
8
3.264
-5.907
-0.051
2.665
CC_DC2DA3:DT8DG9_DD
11
-1.038
1.218
50.239
3.518
-0.010
3.216
27.765
C
C
3
4
8.045
D
D
8
7
3.199
3.846
0.095
0.436
CC_DA3DG4:DC7DT8_DD
12
-1.770
3.702
27.446
-0.004
-0.618
3.338
37.386
C
C
4
5
5.412
D
D
7
6
3.326
3.463
0.806
-0.108
CC_DG4G475:DC6DC7_DD
13
1.849
-2.890
37.187
-0.634
-1.009
3.883
40.233
C
C
5
6
13.013
D
D
6
5
3.392
8.821
2.625
0.516
CC_G475DC6:G475DC6_DD
14
8.442
-12.453
38.409
-0.391
-2.725
3.748
31.818
C
C
6
7
19.239
D
D
5
4
3.534
10.335
-2.796
0.214
CC_DC6DC7:DG4G475_DD
15
-4.189
7.799
29.847
-1.784
4.219
3.216
27.666
C
C
7
8
10.972
D
D
4
3
3.181
5.216
-0.394
0.518
CC_DC7DT8:DA3DG4_DD
16
0.426
-0.897
27.176
-0.164
0.925
2.876
50.260
C
C
8
9
-7.530
D
D
3
2
3.232
-6.380
-0.255
2.846
CC_DT8DG9:DC2DA3_DD
17
-1.349
1.592
49.862
3.780
0.209
3.060
31.051
C
C
9
10
22.735
D
D
2
1
3.102
11.812
0.556
0.878
CC_DG9DG10:DC1DC2_DD
18
-5.464
10.516
28.253
-0.604
-2.077
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Structure summary
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
1999-10-14
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-02-01
1
4
2017-10-04
1
5
2024-02-07
1
6
2024-04-03
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
1999-08-26
REL
CA
CALCIUM ION
HOH
water
CROSSLINKED DNA WAS SYNTHESIZED BY THE CONVERTIBLE NUCLEOSIDE APPROACH
sample
1BD1
BDJ017
PDB
experimental model
CA
1
2
CA
CA
11
A
HOH
2
3
HOH
HOH
12
A
HOH
303
3
HOH
HOH
13
A
HOH
305
3
HOH
HOH
14
A
HOH
308
3
HOH
HOH
15
A
HOH
313
3
HOH
HOH
16
A
HOH
318
3
HOH
HOH
17
A
HOH
324
3
HOH
HOH
18
A
HOH
327
3
HOH
HOH
19
A
HOH
329
3
HOH
HOH
20
A
HOH
334
3
HOH
HOH
21
A
HOH
336
3
HOH
HOH
22
A
HOH
339
3
HOH
HOH
23
A
HOH
342
3
HOH
HOH
24
A
HOH
346
3
HOH
HOH
25
A
HOH
349
3
HOH
HOH
26
A
HOH
351
3
HOH
HOH
27
A
HOH
352
3
HOH
HOH
28
A
HOH
354
3
HOH
HOH
29
A
HOH
355
3
HOH
HOH
30
A
HOH
357
3
HOH
HOH
31
A
HOH
358
3
HOH
HOH
32
A
HOH
381
3
HOH
HOH
33
A
HOH
384
3
HOH
HOH
34
A
HOH
385
3
HOH
HOH
35
A
HOH
389
3
HOH
HOH
36
A
HOH
410
3
HOH
HOH
37
A
HOH
418
3
HOH
HOH
38
A
HOH
420
3
HOH
HOH
39
A
HOH
422
3
HOH
HOH
40
A
HOH
426
3
HOH
HOH
41
A
HOH
427
3
HOH
HOH
42
A
HOH
431
3
HOH
HOH
43
A
HOH
433
3
HOH
HOH
44
A
HOH
438
3
HOH
HOH
45
A
HOH
439
3
HOH
HOH
46
A
HOH
457
3
HOH
HOH
47
A
HOH
461
3
HOH
HOH
48
A
HOH
463
3
HOH
HOH
49
A
HOH
464
3
HOH
HOH
50
A
HOH
465
3
HOH
HOH
51
A
HOH
468
3
HOH
HOH
52
A
HOH
470
3
HOH
HOH
53
A
HOH
476
3
HOH
HOH
54
A
HOH
481
3
HOH
HOH
55
A
HOH
496
3
HOH
HOH
56
A
HOH
502
3
HOH
HOH
57
A
HOH
514
3
HOH
HOH
58
A
HOH
516
3
HOH
HOH
59
A
HOH
519
3
HOH
HOH
60
A
HOH
528
3
HOH
HOH
61
A
HOH
543
3
HOH
HOH
62
A
HOH
544
3
HOH
HOH
63
A
HOH
548
3
HOH
HOH
64
A
HOH
552
3
HOH
HOH
65
A
HOH
556
3
HOH
HOH
66
A
HOH
567
3
HOH
HOH
67
A
HOH
574
3
HOH
HOH
68
A
HOH
581
3
HOH
HOH
69
A
HOH
583
3
HOH
HOH
70
A
HOH
584
3
HOH
HOH
71
A
HOH
590
3
HOH
HOH
72
A
HOH
595
3
HOH
HOH
73
A
HOH
600
3
HOH
HOH
74
A
HOH
606
3
HOH
HOH
75
A
HOH
608
3
HOH
HOH
76
A
HOH
615
3
HOH
HOH
77
A
HOH
617
3
HOH
HOH
78
A
HOH
621
3
HOH
HOH
79
A
HOH
623
3
HOH
HOH
80
A
HOH
639
3
HOH
HOH
81
A
HOH
641
3
HOH
HOH
82
A
HOH
644
3
HOH
HOH
83
A
HOH
654
3
HOH
HOH
84
A
HOH
659
3
HOH
HOH
85
A
HOH
660
3
HOH
HOH
86
A
HOH
690
3
HOH
HOH
87
A
HOH
696
3
HOH
HOH
88
A
HOH
304
3
HOH
HOH
304
B
HOH
306
3
HOH
HOH
306
B
HOH
316
3
HOH
HOH
316
B
HOH
326
3
HOH
HOH
326
B
HOH
328
3
HOH
HOH
328
B
HOH
331
3
HOH
HOH
331
B
HOH
333
3
HOH
HOH
333
B
HOH
338
3
HOH
HOH
338
B
HOH
345
3
HOH
HOH
345
B
HOH
347
3
HOH
HOH
347
B
HOH
348
3
HOH
HOH
348
B
HOH
353
3
HOH
HOH
353
B
HOH
356
3
HOH
HOH
356
B
HOH
359
3
HOH
HOH
359
B
HOH
363
3
HOH
HOH
363
B
HOH
366
3
HOH
HOH
366
B
HOH
367
3
HOH
HOH
367
B
HOH
369
3
HOH
HOH
369
B
HOH
380
3
HOH
HOH
380
B
HOH
382
3
HOH
HOH
382
B
HOH
386
3
HOH
HOH
386
B
HOH
392
3
HOH
HOH
392
B
HOH
393
3
HOH
HOH
393
B
HOH
395
3
HOH
HOH
395
B
HOH
397
3
HOH
HOH
397
B
HOH
419
3
HOH
HOH
419
B
HOH
421
3
HOH
HOH
421
B
HOH
424
3
HOH
HOH
424
B
HOH
428
3
HOH
HOH
428
B
HOH
434
3
HOH
HOH
434
B
HOH
449
3
HOH
HOH
449
B
HOH
450
3
HOH
HOH
450
B
HOH
452
3
HOH
HOH
452
B
HOH
458
3
HOH
HOH
458
B
HOH
467
3
HOH
HOH
467
B
HOH
474
3
HOH
HOH
474
B
HOH
475
3
HOH
HOH
475
B
HOH
492
3
HOH
HOH
492
B
HOH
493
3
HOH
HOH
493
B
HOH
501
3
HOH
HOH
501
B
HOH
507
3
HOH
HOH
507
B
HOH
509
3
HOH
HOH
509
B
HOH
510
3
HOH
HOH
510
B
HOH
513
3
HOH
HOH
513
B
HOH
523
3
HOH
HOH
523
B
HOH
530
3
HOH
HOH
530
B
HOH
533
3
HOH
HOH
533
B
HOH
537
3
HOH
HOH
537
B
HOH
541
3
HOH
HOH
541
B
HOH
545
3
HOH
HOH
545
B
HOH
572
3
HOH
HOH
572
B
HOH
573
3
HOH
HOH
573
B
HOH
587
3
HOH
HOH
587
B
HOH
588
3
HOH
HOH
588
B
HOH
593
3
HOH
HOH
593
B
HOH
596
3
HOH
HOH
596
B
HOH
599
3
HOH
HOH
599
B
HOH
603
3
HOH
HOH
603
B
HOH
609
3
HOH
HOH
609
B
HOH
631
3
HOH
HOH
631
B
HOH
636
3
HOH
HOH
636
B
HOH
637
3
HOH
HOH
637
B
HOH
638
3
HOH
HOH
638
B
HOH
649
3
HOH
HOH
649
B
HOH
651
3
HOH
HOH
651
B
HOH
669
3
HOH
HOH
669
B
HOH
698
3
HOH
HOH
698
B
HOH
706
3
HOH
HOH
706
B
HOH
4
3
HOH
HOH
11
C
HOH
302
3
HOH
HOH
12
C
HOH
309
3
HOH
HOH
13
C
HOH
310
3
HOH
HOH
14
C
HOH
311
3
HOH
HOH
15
C
HOH
312
3
HOH
HOH
16
C
HOH
315
3
HOH
HOH
17
C
HOH
319
3
HOH
HOH
18
C
HOH
320
3
HOH
HOH
19
C
HOH
322
3
HOH
HOH
20
C
HOH
323
3
HOH
HOH
21
C
HOH
325
3
HOH
HOH
22
C
HOH
330
3
HOH
HOH
23
C
HOH
332
3
HOH
HOH
24
C
HOH
350
3
HOH
HOH
25
C
HOH
360
3
HOH
HOH
26
C
HOH
362
3
HOH
HOH
27
C
HOH
364
3
HOH
HOH
28
C
HOH
368
3
HOH
HOH
29
C
HOH
378
3
HOH
HOH
30
C
HOH
390
3
HOH
HOH
31
C
HOH
411
3
HOH
HOH
32
C
HOH
412
3
HOH
HOH
33
C
HOH
413
3
HOH
HOH
34
C
HOH
425
3
HOH
HOH
35
C
HOH
429
3
HOH
HOH
36
C
HOH
430
3
HOH
HOH
37
C
HOH
432
3
HOH
HOH
38
C
HOH
436
3
HOH
HOH
39
C
HOH
440
3
HOH
HOH
40
C
HOH
447
3
HOH
HOH
41
C
HOH
453
3
HOH
HOH
42
C
HOH
456
3
HOH
HOH
43
C
HOH
460
3
HOH
HOH
44
C
HOH
466
3
HOH
HOH
45
C
HOH
480
3
HOH
HOH
46
C
HOH
485
3
HOH
HOH
47
C
HOH
497
3
HOH
HOH
48
C
HOH
518
3
HOH
HOH
49
C
HOH
521
3
HOH
HOH
50
C
HOH
522
3
HOH
HOH
51
C
HOH
538
3
HOH
HOH
52
C
HOH
542
3
HOH
HOH
53
C
HOH
546
3
HOH
HOH
54
C
HOH
549
3
HOH
HOH
55
C
HOH
557
3
HOH
HOH
56
C
HOH
558
3
HOH
HOH
57
C
HOH
563
3
HOH
HOH
58
C
HOH
569
3
HOH
HOH
59
C
HOH
580
3
HOH
HOH
60
C
HOH
586
3
HOH
HOH
61
C
HOH
591
3
HOH
HOH
62
C
HOH
592
3
HOH
HOH
63
C
HOH
594
3
HOH
HOH
64
C
HOH
601
3
HOH
HOH
65
C
HOH
612
3
HOH
HOH
66
C
HOH
624
3
HOH
HOH
67
C
HOH
625
3
HOH
HOH
68
C
HOH
640
3
HOH
HOH
69
C
HOH
653
3
HOH
HOH
70
C
HOH
656
3
HOH
HOH
71
C
HOH
3
3
HOH
HOH
11
D
HOH
314
3
HOH
HOH
12
D
HOH
321
3
HOH
HOH
13
D
HOH
335
3
HOH
HOH
14
D
HOH
337
3
HOH
HOH
15
D
HOH
361
3
HOH
HOH
16
D
HOH
371
3
HOH
HOH
17
D
HOH
372
3
HOH
HOH
18
D
HOH
373
3
HOH
HOH
19
D
HOH
374
3
HOH
HOH
20
D
HOH
375
3
HOH
HOH
21
D
HOH
376
3
HOH
HOH
22
D
HOH
377
3
HOH
HOH
23
D
HOH
383
3
HOH
HOH
24
D
HOH
391
3
HOH
HOH
25
D
HOH
394
3
HOH
HOH
26
D
HOH
398
3
HOH
HOH
27
D
HOH
401
3
HOH
HOH
28
D
HOH
402
3
HOH
HOH
29
D
HOH
403
3
HOH
HOH
30
D
HOH
406
3
HOH
HOH
31
D
HOH
407
3
HOH
HOH
32
D
HOH
408
3
HOH
HOH
33
D
HOH
414
3
HOH
HOH
34
D
HOH
415
3
HOH
HOH
35
D
HOH
416
3
HOH
HOH
36
D
HOH
423
3
HOH
HOH
37
D
HOH
435
3
HOH
HOH
38
D
HOH
437
3
HOH
HOH
39
D
HOH
441
3
HOH
HOH
40
D
HOH
443
3
HOH
HOH
41
D
HOH
444
3
HOH
HOH
42
D
HOH
448
3
HOH
HOH
43
D
HOH
451
3
HOH
HOH
44
D
HOH
462
3
HOH
HOH
45
D
HOH
469
3
HOH
HOH
46
D
HOH
477
3
HOH
HOH
47
D
HOH
478
3
HOH
HOH
48
D
HOH
479
3
HOH
HOH
49
D
HOH
487
3
HOH
HOH
50
D
HOH
504
3
HOH
HOH
51
D
HOH
508
3
HOH
HOH
52
D
HOH
520
3
HOH
HOH
53
D
HOH
525
3
HOH
HOH
54
D
HOH
531
3
HOH
HOH
55
D
HOH
535
3
HOH
HOH
56
D
HOH
547
3
HOH
HOH
57
D
HOH
553
3
HOH
HOH
58
D
HOH
555
3
HOH
HOH
59
D
HOH
565
3
HOH
HOH
60
D
HOH
571
3
HOH
HOH
61
D
HOH
576
3
HOH
HOH
62
D
HOH
585
3
HOH
HOH
63
D
HOH
597
3
HOH
HOH
64
D
HOH
602
3
HOH
HOH
65
D
HOH
604
3
HOH
HOH
66
D
HOH
619
3
HOH
HOH
67
D
HOH
630
3
HOH
HOH
68
D
HOH
643
3
HOH
HOH
69
D
HOH
652
3
HOH
HOH
70
D
HOH
661
3
HOH
HOH
71
D
HOH
667
3
HOH
HOH
72
D
HOH
668
3
HOH
HOH
73
D
HOH
678
3
HOH
HOH
74
D
HOH
685
3
HOH
HOH
75
D
C
1
n
1
DC
1
A
C
2
n
2
DC
2
A
A
3
n
3
DA
3
A
G
4
n
4
DG
4
A
+G
5
n
5
G47
5
A
C
6
n
6
DC
6
A
C
7
n
7
DC
7
A
T
8
n
8
DT
8
A
G
9
n
9
DG
9
A
G
10
n
10
DG
10
A
C
1
n
1
DC
1
B
C
2
n
2
DC
2
B
A
3
n
3
DA
3
B
G
4
n
4
DG
4
B
+G
5
n
5
G47
5
B
C
6
n
6
DC
6
B
C
7
n
7
DC
7
B
T
8
n
8
DT
8
B
G
9
n
9
DG
9
B
G
10
n
10
DG
10
B
C
1
n
1
DC
1
C
C
2
n
2
DC
2
C
A
3
n
3
DA
3
C
G
4
n
4
DG
4
C
+G
5
n
5
G47
5
C
C
6
n
6
DC
6
C
C
7
n
7
DC
7
C
T
8
n
8
DT
8
C
G
9
n
9
DG
9
C
G
10
n
10
DG
10
C
C
1
n
1
DC
1
D
C
2
n
2
DC
2
D
A
3
n
3
DA
3
D
G
4
n
4
DG
4
D
+G
5
n
5
G47
5
D
C
6
n
6
DC
6
D
C
7
n
7
DC
7
D
T
8
n
8
DT
8
D
G
9
n
9
DG
9
D
G
10
n
10
DG
10
D
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
A
G47
5
A
O6
G47
5
1_555
A
CA
11
E
CA
CA
1_555
A
HOH
16
F
O
HOH
1_555
78.1
A
G47
5
A
O6
G47
5
1_555
A
CA
11
E
CA
CA
1_555
A
HOH
21
F
O
HOH
1_555
122.2
A
HOH
16
F
O
HOH
1_555
A
CA
11
E
CA
CA
1_555
A
HOH
21
F
O
HOH
1_555
80.8
A
G47
5
A
O6
G47
5
1_555
A
CA
11
E
CA
CA
1_555
A
HOH
26
F
O
HOH
1_555
73.4
A
HOH
16
F
O
HOH
1_555
A
CA
11
E
CA
CA
1_555
A
HOH
26
F
O
HOH
1_555
95.0
A
HOH
21
F
O
HOH
1_555
A
CA
11
E
CA
CA
1_555
A
HOH
26
F
O
HOH
1_555
161.9
A
G47
5
A
O6
G47
5
1_555
A
CA
11
E
CA
CA
1_555
A
HOH
30
F
O
HOH
1_555
142.8
A
HOH
16
F
O
HOH
1_555
A
CA
11
E
CA
CA
1_555
A
HOH
30
F
O
HOH
1_555
78.3
A
HOH
21
F
O
HOH
1_555
A
CA
11
E
CA
CA
1_555
A
HOH
30
F
O
HOH
1_555
81.3
A
HOH
26
F
O
HOH
1_555
A
CA
11
E
CA
CA
1_555
A
HOH
30
F
O
HOH
1_555
80.6
A
G47
5
A
O6
G47
5
1_555
A
CA
11
E
CA
CA
1_555
B
G47
5
B
O6
G47
5
1_555
72.1
A
HOH
16
F
O
HOH
1_555
A
CA
11
E
CA
CA
1_555
B
G47
5
B
O6
G47
5
1_555
123.2
A
HOH
21
F
O
HOH
1_555
A
CA
11
E
CA
CA
1_555
B
G47
5
B
O6
G47
5
1_555
76.3
A
HOH
26
F
O
HOH
1_555
A
CA
11
E
CA
CA
1_555
B
G47
5
B
O6
G47
5
1_555
119.9
A
HOH
30
F
O
HOH
1_555
A
CA
11
E
CA
CA
1_555
B
G47
5
B
O6
G47
5
1_555
145.0
A
G47
5
A
O6
G47
5
1_555
A
CA
11
E
CA
CA
1_555
B
HOH
359
G
O
HOH
1_555
119.2
A
HOH
16
F
O
HOH
1_555
A
CA
11
E
CA
CA
1_555
B
HOH
359
G
O
HOH
1_555
157.1
A
HOH
21
F
O
HOH
1_555
A
CA
11
E
CA
CA
1_555
B
HOH
359
G
O
HOH
1_555
99.7
A
HOH
26
F
O
HOH
1_555
A
CA
11
E
CA
CA
1_555
B
HOH
359
G
O
HOH
1_555
77.5
A
HOH
30
F
O
HOH
1_555
A
CA
11
E
CA
CA
1_555
B
HOH
359
G
O
HOH
1_555
79.2
B
G47
5
B
O6
G47
5
1_555
A
CA
11
E
CA
CA
1_555
B
HOH
359
G
O
HOH
1_555
78.5
A
G47
5
A
G47
5
DG
B
G47
5
B
G47
5
DG
C
G47
5
C
G47
5
DG
D
G47
5
D
G47
5
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DC
2
0.068
SIDE CHAIN
1
A
DA
3
0.056
SIDE CHAIN
1
A
DC
7
0.073
SIDE CHAIN
1
A
DG
9
0.095
SIDE CHAIN
1
B
DA
3
0.052
SIDE CHAIN
1
B
DC
6
0.059
SIDE CHAIN
1
B
DC
7
0.088
SIDE CHAIN
1
C
DA
3
0.069
SIDE CHAIN
1
C
DC
7
0.101
SIDE CHAIN
1
C
DG
9
0.062
SIDE CHAIN
1
A
B
O5'
OP1
DC
DC
1
6
2.18
1_555
4_456
DNA-RNA_REP.PARAM
DNA-RNA.TOP
18.3
3.895
0.000
0.000
-2.358
0.000
-1.537
MAXIMUM LIKELIHOOD.
0.232
0.203
0.2031
0.2031
1.55
13.0
782
15525
15525
5
95.7
RANDOM
1
RESTRAINED CNS
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
BDJ017
CNS NUCLEIC ACID PARAMETERS USING SOFT VAN DER WAALS PARAMETERS (PARKINSON ET AL., ACTA D, 52, 57-64 (1996)).
FLAT - CNS CALCULATED MASK
1.55
13.0
271
1092
1
820
0
0.009
1.53
3.938
4.824
2.875
3.828
1.61
5
98.0
14.7
1.55
13.0
1CW9
62990
62990
0.0
0.0
0.078
1
9.0
4.0
95.5
0.32
1.55
1.61
3.0
1
4.0
98.0
phasing
AMoRE
refinement
CNS
data collection
MAR345
data scaling
SCALEPACK
DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
covale
1.598
both
A
DG
4
A
O3'
DG
4
1_555
A
G47
5
A
P
G47
5
1_555
covale
1.600
one
A
G47
5
A
O3'
G47
5
1_555
A
DC
6
A
P
DC
6
1_555
covale
2.091
none
A
G47
5
A
SG
G47
5
1_555
B
G47
5
B
SG
G47
5
1_555
covale
1.608
both
B
DG
4
B
O3'
DG
4
1_555
B
G47
5
B
P
G47
5
1_555
covale
1.605
one
B
G47
5
B
O3'
G47
5
1_555
B
DC
6
B
P
DC
6
1_555
covale
1.601
both
C
DG
4
C
O3'
DG
4
1_555
C
G47
5
C
P
G47
5
1_555
covale
1.600
one
C
G47
5
C
O3'
G47
5
1_555
C
DC
6
C
P
DC
6
1_555
covale
2.145
none
C
G47
5
C
SG
G47
5
1_555
D
G47
5
D
SG
G47
5
1_555
covale
1.610
both
D
DG
4
D
O3'
DG
4
1_555
D
G47
5
D
P
G47
5
1_555
covale
1.592
one
D
G47
5
D
O3'
G47
5
1_555
D
DC
6
D
P
DC
6
1_555
metalc
2.513
A
G47
5
A
O6
G47
5
1_555
A
CA
11
E
CA
CA
1_555
metalc
2.442
A
CA
11
E
CA
CA
1_555
A
HOH
16
F
O
HOH
1_555
metalc
2.319
A
CA
11
E
CA
CA
1_555
A
HOH
21
F
O
HOH
1_555
metalc
2.365
A
CA
11
E
CA
CA
1_555
A
HOH
26
F
O
HOH
1_555
metalc
2.492
A
CA
11
E
CA
CA
1_555
A
HOH
30
F
O
HOH
1_555
metalc
2.542
A
CA
11
E
CA
CA
1_555
B
G47
5
B
O6
G47
5
1_555
metalc
2.413
A
CA
11
E
CA
CA
1_555
B
HOH
359
G
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
10
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
10
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
10
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
9
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
9
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
9
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
8
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
8
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
7
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
7
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
7
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
G47
5
A
N1
G47
5
1_555
B
DC
6
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
G47
5
A
N2
G47
5
1_555
B
DC
6
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
G47
5
A
O6
G47
5
1_555
B
DC
6
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
G47
5
B
N1
G47
5
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
G47
5
B
O6
G47
5
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
G47
5
B
N2
G47
5
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N3
DC
7
1_555
B
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N4
DC
7
1_555
B
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
7
A
O2
DC
7
1_555
B
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
3
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
3
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
DC
2
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
DC
2
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
DC
2
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
1
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
1
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
1
B
N4
DC
1
1_555
hydrog
WATSON-CRICK
C
DC
1
C
N3
DC
1
1_555
D
DG
10
D
N1
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
1
C
N4
DC
1
1_555
D
DG
10
D
O6
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
1
C
O2
DC
1
1_555
D
DG
10
D
N2
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
2
C
N3
DC
2
1_555
D
DG
9
D
N1
DG
9
1_555
hydrog
WATSON-CRICK
C
DC
2
C
N4
DC
2
1_555
D
DG
9
D
O6
DG
9
1_555
hydrog
WATSON-CRICK
C
DC
2
C
O2
DC
2
1_555
D
DG
9
D
N2
DG
9
1_555
hydrog
WATSON-CRICK
C
DA
3
C
N1
DA
3
1_555
D
DT
8
D
N3
DT
8
1_555
hydrog
WATSON-CRICK
C
DA
3
C
N6
DA
3
1_555
D
DT
8
D
O4
DT
8
1_555
hydrog
WATSON-CRICK
C
DG
4
C
N1
DG
4
1_555
D
DC
7
D
N3
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
4
C
N2
DG
4
1_555
D
DC
7
D
O2
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
4
C
O6
DG
4
1_555
D
DC
7
D
N4
DC
7
1_555
hydrog
WATSON-CRICK
C
G47
5
C
N1
G47
5
1_555
D
DC
6
D
N3
DC
6
1_555
hydrog
WATSON-CRICK
C
G47
5
C
N2
G47
5
1_555
D
DC
6
D
O2
DC
6
1_555
hydrog
WATSON-CRICK
C
G47
5
C
O6
G47
5
1_555
D
DC
6
D
N4
DC
6
1_555
hydrog
DC-G47 PAIR
C
DC
6
C
O2
DC
6
1_555
D
G47
5
D
N2
G47
5
1_555
hydrog
WATSON-CRICK
C
DC
7
C
N3
DC
7
1_555
D
DG
4
D
N1
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
7
C
N4
DC
7
1_555
D
DG
4
D
O6
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
7
C
O2
DC
7
1_555
D
DG
4
D
N2
DG
4
1_555
hydrog
WATSON-CRICK
C
DT
8
C
N3
DT
8
1_555
D
DA
3
D
N1
DA
3
1_555
hydrog
WATSON-CRICK
C
DT
8
C
O4
DT
8
1_555
D
DA
3
D
N6
DA
3
1_555
hydrog
WATSON-CRICK
C
DG
9
C
N1
DG
9
1_555
D
DC
2
D
N3
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
9
C
N2
DG
9
1_555
D
DC
2
D
O2
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
9
C
O6
DG
9
1_555
D
DC
2
D
N4
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
10
C
N1
DG
10
1_555
D
DC
1
D
N3
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
10
C
N2
DG
10
1_555
D
DC
1
D
O2
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
10
C
O6
DG
10
1_555
D
DC
1
D
N4
DC
1
1_555
DNA
CROSSLINKED DOUBLE-HELICAL DNA, BASE-PAIR OPENING, PARTIAL BASE FLIPPING., DNA
1CW9
PDB
1
1CW9
1
10
1CW9
1
10
1CW9
A
1
1
10
1
10
1CW9
1
10
1CW9
B
1
1
10
1
10
1CW9
1
10
1CW9
C
1
1
10
1
10
1CW9
1
10
1CW9
D
1
1
10
BINDING SITE FOR RESIDUE CA A 11
A
CA
11
Software
7
A
G47
5
A
G47
5
7
1_555
A
HOH
16
F
HOH
7
1_555
A
HOH
21
F
HOH
7
1_555
A
HOH
26
F
HOH
7
1_555
A
HOH
30
F
HOH
7
1_555
B
G47
5
B
G47
5
7
1_555
B
HOH
359
G
HOH
7
1_555
19
orthorhombic
P 21 21 21