0.022391 0.000000 0.000000 0.000000 0.021432 0.000000 0.000000 0.000000 0.017153 0.00000 0.00000 0.00000 Mikol, V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 44.660 46.660 58.298 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C10 H14 N O5 P 259.196 n 2-AMINO-3-(4-PHOSPHONOMETHYL-PHENYL)-PROPIONIC ACID L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 246 344 355 10.1006/jmbi.1994.0089 7532720 The crystal structures of the SH2 domain of p56lck complexed with two phosphopeptides suggest a gated peptide binding site. 1995 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 11134.396 P56LCK TYROSINE KINASE PHOSPHOTYROSINE RECOGNITION DOMAIN SH2 1 man polymer 1128.080 (PHOSPHONOMETHYL)PHENYLALANINE-CONTAINING PEPTIDE PRO-GLU-GLY-ASP-PM3-GLU-GLU-VAL-LEU 1 man polymer 18.015 water 129 nat water no no GSWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHE LVRHYTNASDGLCTRLSR GSWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHE LVRHYTNASDGLCTRLSR L polypeptide(L) no yes PEGD(PM3)EEVL PEGDFEEVL P polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli 2.48 50.32 repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance 1 0 1996-12-07 1 1 2008-03-24 1 2 2011-07-13 Y 1995-09-06 REL HOH water THE REGION BETWEEN RESIDUES 3 AND 100 CORRESPONDS TO THE REGION OF THE P56 LCK TYROSINE KINASE BETWEEN RESIDUES 124 AND 224 AND HAS BEEN ASSIGNED CHAIN IDENTIFIER "L" IN THIS ENTRY. THE PHOSPHOPEPTIDE HAS CHAIN IDENTIFIER "P". HOH 1 3 HOH HOH 101 L HOH 2 3 HOH HOH 102 L HOH 4 3 HOH HOH 103 L HOH 5 3 HOH HOH 104 L HOH 6 3 HOH HOH 105 L HOH 7 3 HOH HOH 106 L HOH 8 3 HOH HOH 107 L HOH 9 3 HOH HOH 108 L HOH 10 3 HOH HOH 109 L HOH 11 3 HOH HOH 110 L HOH 12 3 HOH HOH 111 L HOH 14 3 HOH HOH 112 L HOH 16 3 HOH HOH 113 L HOH 17 3 HOH HOH 114 L HOH 21 3 HOH HOH 115 L HOH 22 3 HOH HOH 116 L HOH 23 3 HOH HOH 117 L HOH 24 3 HOH HOH 118 L HOH 25 3 HOH HOH 119 L HOH 26 3 HOH HOH 120 L HOH 28 3 HOH HOH 121 L HOH 29 3 HOH HOH 122 L HOH 30 3 HOH HOH 123 L HOH 31 3 HOH HOH 124 L HOH 32 3 HOH HOH 125 L HOH 33 3 HOH HOH 126 L HOH 34 3 HOH HOH 127 L HOH 35 3 HOH HOH 128 L HOH 37 3 HOH HOH 129 L HOH 38 3 HOH HOH 130 L HOH 39 3 HOH HOH 131 L HOH 40 3 HOH HOH 132 L HOH 41 3 HOH HOH 133 L HOH 42 3 HOH HOH 134 L HOH 43 3 HOH HOH 135 L HOH 44 3 HOH HOH 136 L HOH 45 3 HOH HOH 137 L HOH 46 3 HOH HOH 138 L HOH 47 3 HOH HOH 139 L HOH 48 3 HOH HOH 140 L HOH 49 3 HOH HOH 141 L HOH 50 3 HOH HOH 142 L HOH 52 3 HOH HOH 143 L HOH 53 3 HOH HOH 144 L HOH 54 3 HOH HOH 145 L HOH 55 3 HOH HOH 146 L HOH 56 3 HOH HOH 147 L HOH 57 3 HOH HOH 148 L HOH 59 3 HOH HOH 149 L HOH 60 3 HOH HOH 150 L HOH 61 3 HOH HOH 151 L HOH 62 3 HOH HOH 152 L HOH 63 3 HOH HOH 153 L HOH 64 3 HOH HOH 154 L HOH 65 3 HOH HOH 155 L HOH 66 3 HOH HOH 156 L HOH 67 3 HOH HOH 157 L HOH 68 3 HOH HOH 158 L HOH 69 3 HOH HOH 159 L HOH 70 3 HOH HOH 160 L HOH 71 3 HOH HOH 161 L HOH 72 3 HOH HOH 162 L HOH 73 3 HOH HOH 163 L HOH 74 3 HOH HOH 164 L HOH 75 3 HOH HOH 165 L HOH 76 3 HOH HOH 166 L HOH 77 3 HOH HOH 167 L HOH 78 3 HOH HOH 168 L HOH 79 3 HOH HOH 169 L HOH 80 3 HOH HOH 170 L HOH 81 3 HOH HOH 171 L HOH 82 3 HOH HOH 172 L HOH 83 3 HOH HOH 173 L HOH 85 3 HOH HOH 174 L HOH 86 3 HOH HOH 175 L HOH 87 3 HOH HOH 176 L HOH 88 3 HOH HOH 177 L HOH 89 3 HOH HOH 178 L HOH 90 3 HOH HOH 179 L HOH 91 3 HOH HOH 180 L HOH 92 3 HOH HOH 181 L HOH 93 3 HOH HOH 182 L HOH 94 3 HOH HOH 183 L HOH 95 3 HOH HOH 184 L HOH 96 3 HOH HOH 185 L HOH 97 3 HOH HOH 186 L HOH 98 3 HOH HOH 187 L HOH 99 3 HOH HOH 188 L HOH 100 3 HOH HOH 189 L HOH 101 3 HOH HOH 190 L HOH 102 3 HOH HOH 191 L HOH 103 3 HOH HOH 192 L HOH 104 3 HOH HOH 193 L HOH 105 3 HOH HOH 194 L HOH 106 3 HOH HOH 195 L HOH 107 3 HOH HOH 196 L HOH 110 3 HOH HOH 197 L HOH 112 3 HOH HOH 198 L HOH 113 3 HOH HOH 199 L HOH 114 3 HOH HOH 200 L HOH 115 3 HOH HOH 201 L HOH 116 3 HOH HOH 202 L HOH 117 3 HOH HOH 203 L HOH 118 3 HOH HOH 204 L HOH 119 3 HOH HOH 205 L HOH 120 3 HOH HOH 206 L HOH 121 3 HOH HOH 207 L HOH 122 3 HOH HOH 208 L HOH 123 3 HOH HOH 209 L HOH 124 3 HOH HOH 210 L HOH 125 3 HOH HOH 211 L HOH 126 3 HOH HOH 212 L HOH 127 3 HOH HOH 213 L HOH 128 3 HOH HOH 214 L HOH 129 3 HOH HOH 215 L HOH 3 3 HOH HOH 10 P HOH 13 3 HOH HOH 11 P HOH 15 3 HOH HOH 12 P HOH 18 3 HOH HOH 13 P HOH 19 3 HOH HOH 14 P HOH 20 3 HOH HOH 15 P HOH 27 3 HOH HOH 16 P HOH 36 3 HOH HOH 17 P HOH 51 3 HOH HOH 18 P HOH 58 3 HOH HOH 19 P HOH 84 3 HOH HOH 20 P HOH 108 3 HOH HOH 21 P HOH 109 3 HOH HOH 22 P HOH 111 3 HOH HOH 23 P GLY 3 n 1 GLY 3 L SER 4 n 2 SER 4 L TRP 5 n 3 TRP 5 L PHE 6 n 4 PHE 6 L PHE 7 n 5 PHE 7 L LYS 8 n 6 LYS 8 L ASN 9 n 7 ASN 9 L LEU 10 n 8 LEU 10 L SER 11 n 9 SER 11 L ARG 12 n 10 ARG 12 L LYS 13 n 11 LYS 13 L ASP 14 n 12 ASP 14 L ALA 15 n 13 ALA 15 L GLU 16 n 14 GLU 16 L ARG 17 n 15 ARG 17 L GLN 18 n 16 GLN 18 L LEU 19 n 17 LEU 19 L LEU 20 n 18 LEU 20 L ALA 21 n 19 ALA 21 L PRO 22 n 20 PRO 22 L GLY 23 n 21 GLY 23 L ASN 24 n 22 ASN 24 L THR 25 n 23 THR 25 L HIS 26 n 24 HIS 26 L GLY 27 n 25 GLY 27 L SER 28 n 26 SER 28 L PHE 29 n 27 PHE 29 L LEU 30 n 28 LEU 30 L ILE 31 n 29 ILE 31 L ARG 32 n 30 ARG 32 L GLU 33 n 31 GLU 33 L SER 34 n 32 SER 34 L GLU 35 n 33 GLU 35 L SER 36 n 34 SER 36 L THR 37 n 35 THR 37 L ALA 38 n 36 ALA 38 L GLY 39 n 37 GLY 39 L SER 40 n 38 SER 40 L PHE 41 n 39 PHE 41 L SER 42 n 40 SER 42 L LEU 43 n 41 LEU 43 L SER 44 n 42 SER 44 L VAL 45 n 43 VAL 45 L ARG 46 n 44 ARG 46 L ASP 47 n 45 ASP 47 L PHE 48 n 46 PHE 48 L ASP 49 n 47 ASP 49 L GLN 50 n 48 GLN 50 L ASN 51 n 49 ASN 51 L GLN 52 n 50 GLN 52 L GLY 53 n 51 GLY 53 L GLU 54 n 52 GLU 54 L VAL 55 n 53 VAL 55 L VAL 56 n 54 VAL 56 L LYS 57 n 55 LYS 57 L HIS 58 n 56 HIS 58 L TYR 59 n 57 TYR 59 L LYS 60 n 58 LYS 60 L ILE 61 n 59 ILE 61 L ARG 62 n 60 ARG 62 L ASN 63 n 61 ASN 63 L LEU 64 n 62 LEU 64 L ASP 65 n 63 ASP 65 L ASN 66 n 64 ASN 66 L GLY 67 n 65 GLY 67 L GLY 68 n 66 GLY 68 L PHE 69 n 67 PHE 69 L TYR 70 n 68 TYR 70 L ILE 71 n 69 ILE 71 L SER 72 n 70 SER 72 L PRO 73 n 71 PRO 73 L ARG 74 n 72 ARG 74 L ILE 75 n 73 ILE 75 L THR 76 n 74 THR 76 L PHE 77 n 75 PHE 77 L PRO 78 n 76 PRO 78 L GLY 79 n 77 GLY 79 L LEU 80 n 78 LEU 80 L HIS 81 n 79 HIS 81 L GLU 82 n 80 GLU 82 L LEU 83 n 81 LEU 83 L VAL 84 n 82 VAL 84 L ARG 85 n 83 ARG 85 L HIS 86 n 84 HIS 86 L TYR 87 n 85 TYR 87 L THR 88 n 86 THR 88 L ASN 89 n 87 ASN 89 L ALA 90 n 88 ALA 90 L SER 91 n 89 SER 91 L ASP 92 n 90 ASP 92 L GLY 93 n 91 GLY 93 L LEU 94 n 92 LEU 94 L CYS 95 n 93 CYS 95 L THR 96 n 94 THR 96 L ARG 97 n 95 ARG 97 L LEU 98 n 96 LEU 98 L SER 99 n 97 SER 99 L ARG 100 n 98 ARG 100 L n 1 1 P GLU 2 n 2 GLU 2 P GLY 3 n 3 GLY 3 P ASP 4 n 4 ASP 4 P PHE 5 n 5 PM3 5 P GLU 6 n 6 GLU 6 P GLU 7 n 7 GLU 7 P VAL 8 n 8 VAL 8 P LEU 9 n 9 LEU 9 P author_defined_assembly 2 dimeric P PM3 5 B PM3 5 PHE 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L O PHE 7 A O PHE 5 L N ILE 31 A N ILE 29 L O LEU 30 A O LEU 28 L N SER 44 A N SER 42 L O PHE 41 A O PHE 39 L N ILE 61 A N ILE 59 1 L CG ARG 100 A CG ARG 98 1 Y 1 L CD ARG 100 A CD ARG 98 1 Y 1 L NE ARG 100 A NE ARG 98 1 Y 1 L CZ ARG 100 A CZ ARG 98 1 Y 1 L NH1 ARG 100 A NH1 ARG 98 1 Y 1 L NH2 ARG 100 A NH2 ARG 98 1 Y 1 P PRO 1 B PRO 1 1 Y 1 L TYR 70 -170.43 146.05 1 L ASP 92 29.72 62.69 1 P ASP 4 99.94 77.68 0.185 0.185 2.25 8.0 1 2.0 2.25 8.0 129 980 0 0 851 0.015 1.85 2.25 8.0 1CWD 5815 1 95.6 refinement X-PLOR P56LCK TYROSINE KINASE, PHOSPHOPEPTIDE PRO-GLU-GLY-ASP-PMP-GLU-GLU-VAL-LEU, WHERE PMP IS (PHOSPHONOMETHYL)PHENYLALANINE, PHOSPHONOMETHYL GROUP HUMAN P56LCK TYROSINE KINASE COMPLEXED WITH PHOSPHOPEPTIDE 1 N N 2 N N 3 N N 3 N N L ARG 12 A ARG 10 HELX_P L LEU 19 A LEU 17 1 1 8 L LEU 80 A LEU 78 HELX_P L ASN 89 A ASN 87 1 2 10 covale 1.314 P ASP 4 B C ASP 4 1_555 P PM3 5 B N PM3 5 1_555 covale 1.314 P PM3 5 B C PM3 5 1_555 P GLU 6 B N GLU 6 1_555 PHOSPHOTRANSFERASE/TRANSFERASE INHIBITOR PHOSPHOTRANSFERASE, COMPLEX (PHOSPHOTRANSFERASE-PEPTIDE), PHOSPHOTRANSFERASE-TRANSFERASE INHIBITOR COMPLEX LCK_HUMAN UNP 1 1 P06239 GCGCSSHPEDDWMENIDVCENCHYPIVPLDGKGTLLIRNGSEVRDPLVTYEGSNPPASPLQDNLVIALHSYEPSHDGDLG FEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAG SFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNASDGLCTRLSRPCQTQKPQKPWWEDEWEVP RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN GSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAK FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERP EDRPTFDYLRSVLEDFFTATEGQYQPQP 1CWD PDB 2 1 1CWD PEGDFEEVL 52 221 1CWD 3 100 P06239 L 1 1 98 1 9 1CWD 1 9 1CWD P 2 1 9 1 ASN DELETION 1CWD L P06239 UNP 54 1 PRO DELETION 1CWD L P06239 UNP 55 1 PRO DELETION 1CWD L P06239 UNP 56 1 ALA DELETION 1CWD L P06239 UNP 57 1 SER DELETION 1CWD L P06239 UNP 58 1 PRO DELETION 1CWD L P06239 UNP 59 1 LEU DELETION 1CWD L P06239 UNP 60 1 GLN DELETION 1CWD L P06239 UNP 61 1 ASP DELETION 1CWD L P06239 UNP 62 1 ASN DELETION 1CWD L P06239 UNP 63 1 LEU DELETION 1CWD L P06239 UNP 64 1 VAL DELETION 1CWD L P06239 UNP 65 1 ILE DELETION 1CWD L P06239 UNP 66 1 ALA DELETION 1CWD L P06239 UNP 67 1 LEU DELETION 1CWD L P06239 UNP 68 1 HIS DELETION 1CWD L P06239 UNP 69 1 SER DELETION 1CWD L P06239 UNP 70 1 TYR DELETION 1CWD L P06239 UNP 71 1 GLU DELETION 1CWD L P06239 UNP 72 1 PRO DELETION 1CWD L P06239 UNP 73 1 SER DELETION 1CWD L P06239 UNP 74 1 HIS DELETION 1CWD L P06239 UNP 75 1 ASP DELETION 1CWD L P06239 UNP 76 1 GLY DELETION 1CWD L P06239 UNP 77 1 ASP DELETION 1CWD L P06239 UNP 78 1 LEU DELETION 1CWD L P06239 UNP 79 1 GLY DELETION 1CWD L P06239 UNP 80 1 PHE DELETION 1CWD L P06239 UNP 81 1 GLU DELETION 1CWD L P06239 UNP 82 1 LYS DELETION 1CWD L P06239 UNP 83 1 GLY DELETION 1CWD L P06239 UNP 84 1 GLU DELETION 1CWD L P06239 UNP 85 1 GLN DELETION 1CWD L P06239 UNP 86 1 LEU DELETION 1CWD L P06239 UNP 87 1 ARG DELETION 1CWD L P06239 UNP 88 1 ILE DELETION 1CWD L P06239 UNP 89 1 LEU DELETION 1CWD L P06239 UNP 90 1 GLU DELETION 1CWD L P06239 UNP 91 1 GLN DELETION 1CWD L P06239 UNP 92 1 SER DELETION 1CWD L P06239 UNP 93 1 GLY DELETION 1CWD L P06239 UNP 94 1 GLU DELETION 1CWD L P06239 UNP 95 1 TRP DELETION 1CWD L P06239 UNP 96 1 TRP DELETION 1CWD L P06239 UNP 97 1 LYS DELETION 1CWD L P06239 UNP 98 1 ALA DELETION 1CWD L P06239 UNP 99 1 GLN DELETION 1CWD L P06239 UNP 100 1 SER DELETION 1CWD L P06239 UNP 101 1 LEU DELETION 1CWD L P06239 UNP 102 1 THR DELETION 1CWD L P06239 UNP 103 1 THR DELETION 1CWD L P06239 UNP 104 1 GLY DELETION 1CWD L P06239 UNP 105 1 GLN DELETION 1CWD L P06239 UNP 106 1 GLU DELETION 1CWD L P06239 UNP 107 1 GLY DELETION 1CWD L P06239 UNP 108 1 PHE DELETION 1CWD L P06239 UNP 109 1 ILE DELETION 1CWD L P06239 UNP 110 1 PRO DELETION 1CWD L P06239 UNP 111 1 PHE DELETION 1CWD L P06239 UNP 112 1 ASN DELETION 1CWD L P06239 UNP 113 1 PHE DELETION 1CWD L P06239 UNP 114 1 VAL DELETION 1CWD L P06239 UNP 115 1 ALA DELETION 1CWD L P06239 UNP 116 1 LYS DELETION 1CWD L P06239 UNP 117 1 ALA DELETION 1CWD L P06239 UNP 118 1 ASN DELETION 1CWD L P06239 UNP 119 1 SER DELETION 1CWD L P06239 UNP 120 1 LEU DELETION 1CWD L P06239 UNP 121 1 GLU DELETION 1CWD L P06239 UNP 122 1 PRO DELETION 1CWD L P06239 UNP 123 1 GLU DELETION 1CWD L P06239 UNP 124 1 PRO DELETION 1CWD L P06239 UNP 125 4 parallel anti-parallel anti-parallel L PHE 6 A PHE 4 L LYS 8 A LYS 6 L PHE 29 A PHE 27 L GLU 33 A GLU 31 L PHE 41 A PHE 39 L ASP 49 A ASP 47 L GLY 53 A GLY 51 L ILE 61 A ILE 59 BINDING SITE FOR CHAIN P OF (PHOSPHONOMETHYL)PHENYLALANINE-CONTAINING PEPTIDE PRO-GLU- GLY-ASP-PM3-GLU-GLU-VAL-LEU Software 19 L ARG 12 A ARG 10 19 1_555 L ARG 32 A ARG 30 19 1_555 L SER 42 A SER 40 19 1_555 L LYS 57 A LYS 55 19 1_555 L HIS 58 A HIS 56 19 1_555 L TYR 59 A TYR 57 19 1_555 L LYS 60 A LYS 58 19 1_555 L ASP 65 A ASP 63 19 4_555 L SER 72 A SER 70 19 1_555 L ARG 74 A ARG 72 19 1_555 L HIS 86 A HIS 84 19 3_554 L ASN 89 A ASN 87 19 3_554 L GLY 93 A GLY 91 19 1_555 L HOH 102 C HOH 19 1_555 L HOH 111 C HOH 19 1_555 P HOH 10 D HOH 19 1_555 P HOH 12 D HOH 19 1_555 P HOH 15 D HOH 19 1_555 P HOH 21 D HOH 19 1_555 19 P 21 21 21