0.012146 0.000000 0.000000 0.000000 0.012146 0.000000 0.000000 0.000000 0.026589 0.00000 0.00000 0.00000 Axelrod, H.L. Feher, G. Allen, J.P. Chirino, A.J. Day, M.W. Hsu, B.T. Rees, D.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 82.330 82.330 37.610 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H34 Fe N4 O4 618.503 HEME C non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 50 596 602 10.1107/S0907444994001319 15299423 Crystallization and X-ray structure determination of cytochrome c2 from Rhodobacter sphaeroides in three crystal forms. 1994 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 13488.064 CYTOCHROME C2 1 nat polymer 618.503 HEME C 1 syn non-polymer 18.015 water 24 nat water no no QEGDPEAGAKAFNQCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEEHFVQYV QDPTKFLKEYTGDAKAKGKMTFKLKKEADAHNIWAYLQQVAVRP QEGDPEAGAKAFNQCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEEHFVQYV QDPTKFLKEYTGDAKAKGKMTFKLKKEADAHNIWAYLQQVAVRP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Rhodobacter sample 1063 Rhodobacter sphaeroides 2.36 47.92 pdbx_database_status struct_conf struct_conf_type atom_site chem_comp entity pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Derived calculations Other Atomic model Data collection Derived calculations Non-polymer description Structure summary 1 0 1995-09-15 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 2 0 2021-03-03 _pdbx_database_status.process_site _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.type_symbol _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.name _chem_comp.pdbx_synonyms _entity.formula_weight _entity.pdbx_description _pdbx_entity_nonpoly.comp_id _pdbx_entity_nonpoly.name _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1994-02-14 REL REL HEC HEME C HOH water HEM 125 2 HEC HEC 125 A HOH 1 3 HOH HOH 126 A HOH 2 3 HOH HOH 127 A HOH 3 3 HOH HOH 128 A HOH 4 3 HOH HOH 129 A HOH 5 3 HOH HOH 130 A HOH 6 3 HOH HOH 131 A HOH 7 3 HOH HOH 132 A HOH 8 3 HOH HOH 133 A HOH 9 3 HOH HOH 134 A HOH 10 3 HOH HOH 135 A HOH 11 3 HOH HOH 136 A HOH 12 3 HOH HOH 137 A HOH 13 3 HOH HOH 138 A HOH 14 3 HOH HOH 139 A HOH 15 3 HOH HOH 140 A HOH 16 3 HOH HOH 141 A HOH 17 3 HOH HOH 142 A HOH 18 3 HOH HOH 143 A HOH 19 3 HOH HOH 144 A HOH 21 3 HOH HOH 145 A HOH 22 3 HOH HOH 146 A HOH 23 3 HOH HOH 147 A HOH 24 3 HOH HOH 148 A HOH 25 3 HOH HOH 149 A GLN 1 n 1 GLN 1 A GLU 2 n 2 GLU 2 A GLY 3 n 3 GLY 3 A ASP 4 n 4 ASP 4 A PRO 5 n 5 PRO 5 A GLU 6 n 6 GLU 6 A ALA 7 n 7 ALA 7 A GLY 8 n 8 GLY 8 A ALA 9 n 9 ALA 9 A LYS 10 n 10 LYS 10 A ALA 11 n 11 ALA 11 A PHE 12 n 12 PHE 12 A ASN 13 n 13 ASN 13 A GLN 14 n 14 GLN 14 A CYS 15 n 15 CYS 15 A GLN 16 n 16 GLN 16 A THR 17 n 17 THR 17 A CYS 18 n 18 CYS 18 A HIS 19 n 19 HIS 19 A VAL 20 n 20 VAL 20 A ILE 21 n 21 ILE 21 A VAL 22 n 22 VAL 22 A ASP 23 n 23 ASP 23 A ASP 24 n 24 ASP 24 A SER 25 n 25 SER 25 A GLY 26 n 26 GLY 26 A THR 27 n 27 THR 27 A THR 28 n 28 THR 28 A ILE 29 n 29 ILE 29 A ALA 30 n 30 ALA 30 A GLY 31 n 31 GLY 31 A ARG 32 n 32 ARG 32 A ASN 33 n 33 ASN 33 A ALA 34 n 34 ALA 34 A LYS 35 n 35 LYS 35 A THR 36 n 36 THR 36 A GLY 37 n 37 GLY 37 A PRO 38 n 38 PRO 38 A ASN 39 n 39 ASN 39 A LEU 40 n 40 LEU 40 A TYR 41 n 41 TYR 41 A GLY 42 n 42 GLY 42 A VAL 43 n 43 VAL 43 A VAL 44 n 44 VAL 44 A GLY 45 n 45 GLY 45 A ARG 46 n 46 ARG 46 A THR 47 n 47 THR 47 A ALA 48 n 48 ALA 48 A GLY 49 n 49 GLY 49 A THR 50 n 50 THR 50 A GLN 51 n 51 GLN 51 A ALA 52 n 52 ALA 52 A ASP 53 n 53 ASP 53 A PHE 54 n 54 PHE 54 A LYS 55 n 55 LYS 55 A GLY 56 n 56 GLY 56 A TYR 57 n 57 TYR 57 A GLY 58 n 58 GLY 58 A GLU 59 n 59 GLU 59 A GLY 60 n 60 GLY 60 A MET 61 n 61 MET 61 A LYS 62 n 62 LYS 62 A GLU 63 n 63 GLU 63 A ALA 64 n 64 ALA 64 A GLY 65 n 65 GLY 65 A ALA 66 n 66 ALA 66 A LYS 67 n 67 LYS 67 A GLY 68 n 68 GLY 68 A LEU 69 n 69 LEU 69 A ALA 70 n 70 ALA 70 A TRP 71 n 71 TRP 71 A ASP 72 n 72 ASP 72 A GLU 73 n 73 GLU 73 A GLU 74 n 74 GLU 74 A HIS 75 n 75 HIS 75 A PHE 76 n 76 PHE 76 A VAL 77 n 77 VAL 77 A GLN 78 n 78 GLN 78 A TYR 79 n 79 TYR 79 A VAL 80 n 80 VAL 80 A GLN 81 n 81 GLN 81 A ASP 82 n 82 ASP 82 A PRO 83 n 83 PRO 83 A THR 84 n 84 THR 84 A LYS 85 n 85 LYS 85 A PHE 86 n 86 PHE 86 A LEU 87 n 87 LEU 87 A LYS 88 n 88 LYS 88 A GLU 89 n 89 GLU 89 A TYR 90 n 90 TYR 90 A THR 91 n 91 THR 91 A GLY 92 n 92 GLY 92 A ASP 93 n 93 ASP 93 A ALA 94 n 94 ALA 94 A LYS 95 n 95 LYS 95 A ALA 96 n 96 ALA 96 A LYS 97 n 97 LYS 97 A GLY 98 n 98 GLY 98 A LYS 99 n 99 LYS 99 A MET 100 n 100 MET 100 A THR 101 n 101 THR 101 A PHE 102 n 102 PHE 102 A LYS 103 n 103 LYS 103 A LEU 104 n 104 LEU 104 A LYS 105 n 105 LYS 105 A LYS 106 n 106 LYS 106 A GLU 107 n 107 GLU 107 A ALA 108 n 108 ALA 108 A ASP 109 n 109 ASP 109 A ALA 110 n 110 ALA 110 A HIS 111 n 111 HIS 111 A ASN 112 n 112 ASN 112 A ILE 113 n 113 ILE 113 A TRP 114 n 114 TRP 114 A ALA 115 n 115 ALA 115 A TYR 116 n 116 TYR 116 A LEU 117 n 117 LEU 117 A GLN 118 n 118 GLN 118 A GLN 119 n 119 GLN 119 A VAL 120 n 120 VAL 120 A ALA 121 n 121 ALA 121 A VAL 122 n 122 VAL 122 A ARG 123 n 123 ARG 123 A PRO 124 n 124 PRO 124 A author_defined_assembly 1 monomeric A HIS 19 A NE2 HIS 19 1_555 A HEC 125 B FE HEC 1_555 A HEC 125 B NA HEC 1_555 89.9 A HIS 19 A NE2 HIS 19 1_555 A HEC 125 B FE HEC 1_555 A HEC 125 B NB HEC 1_555 90.0 A HEC 125 B NA HEC 1_555 A HEC 125 B FE HEC 1_555 A HEC 125 B NB HEC 1_555 89.7 A HIS 19 A NE2 HIS 19 1_555 A HEC 125 B FE HEC 1_555 A HEC 125 B NC HEC 1_555 90.8 A HEC 125 B NA HEC 1_555 A HEC 125 B FE HEC 1_555 A HEC 125 B NC HEC 1_555 179.1 A HEC 125 B NB HEC 1_555 A HEC 125 B FE HEC 1_555 A HEC 125 B NC HEC 1_555 89.7 A HIS 19 A NE2 HIS 19 1_555 A HEC 125 B FE HEC 1_555 A HEC 125 B ND HEC 1_555 88.5 A HEC 125 B NA HEC 1_555 A HEC 125 B FE HEC 1_555 A HEC 125 B ND HEC 1_555 91.1 A HEC 125 B NB HEC 1_555 A HEC 125 B FE HEC 1_555 A HEC 125 B ND HEC 1_555 178.2 A HEC 125 B NC HEC 1_555 A HEC 125 B FE HEC 1_555 A HEC 125 B ND HEC 1_555 89.5 A HIS 19 A NE2 HIS 19 1_555 A HEC 125 B FE HEC 1_555 A MET 100 A SD MET 100 1_555 177.7 A HEC 125 B NA HEC 1_555 A HEC 125 B FE HEC 1_555 A MET 100 A SD MET 100 1_555 88.5 A HEC 125 B NB HEC 1_555 A HEC 125 B FE HEC 1_555 A MET 100 A SD MET 100 1_555 91.7 A HEC 125 B NC HEC 1_555 A HEC 125 B FE HEC 1_555 A MET 100 A SD MET 100 1_555 90.8 A HEC 125 B ND HEC 1_555 A HEC 125 B FE HEC 1_555 A MET 100 A SD MET 100 1_555 89.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 21 A O ILE 21 A N ILE 29 A N ILE 29 1 A NZ LYS 10 A NZ LYS 10 1 Y 1 A NE ARG 32 A NE ARG 32 1 Y 1 A CZ ARG 32 A CZ ARG 32 1 Y 1 A NH1 ARG 32 A NH1 ARG 32 1 Y 1 A NH2 ARG 32 A NH2 ARG 32 1 Y 1 A CG ASN 33 A CG ASN 33 1 Y 1 A OD1 ASN 33 A OD1 ASN 33 1 Y 1 A ND2 ASN 33 A ND2 ASN 33 1 Y 1 A CE LYS 35 A CE LYS 35 1 Y 1 A NZ LYS 35 A NZ LYS 35 1 Y 1 A CG GLU 74 A CG GLU 74 1 Y 1 A CD GLU 74 A CD GLU 74 1 Y 1 A OE1 GLU 74 A OE1 GLU 74 1 Y 1 A OE2 GLU 74 A OE2 GLU 74 1 Y 1 A OE1 GLN 78 A OE1 GLN 78 1 Y 1 A NE2 GLN 78 A NE2 GLN 78 1 Y 1 A NZ LYS 85 A NZ LYS 85 1 Y 1 A OE1 GLU 89 A OE1 GLU 89 1 Y 1 A OE2 GLU 89 A OE2 GLU 89 1 Y 1 A CD LYS 95 A CD LYS 95 1 Y 1 A CE LYS 95 A CE LYS 95 1 Y 1 A NZ LYS 95 A NZ LYS 95 1 Y 1 A CG LYS 97 A CG LYS 97 1 Y 1 A CD LYS 97 A CD LYS 97 1 Y 1 A CE LYS 97 A CE LYS 97 1 Y 1 A NZ LYS 97 A NZ LYS 97 1 Y 1 A CE LYS 105 A CE LYS 105 1 Y 1 A NZ LYS 105 A NZ LYS 105 1 Y 1 A CE LYS 106 A CE LYS 106 1 Y 1 A NZ LYS 106 A NZ LYS 106 1 Y 1 A GLN 1 17.75 1 A PRO 5 11.52 1 A GLY 8 10.60 1 A HIS 19 -15.87 1 A VAL 20 14.05 1 A ILE 21 10.80 1 A ALA 30 10.85 1 A GLY 31 -14.44 1 A VAL 43 16.29 1 A GLY 45 -10.06 1 A GLY 49 -10.26 1 A LYS 55 -12.37 1 A GLU 63 11.03 1 A LYS 67 14.75 1 A LEU 69 10.49 1 A VAL 77 -10.27 1 A GLU 89 10.49 1 A TYR 90 14.58 1 A ALA 94 11.34 1 A LYS 95 11.16 1 A THR 101 -17.23 1 A PHE 102 10.69 1 A ARG 123 10.32 1 A ASP 4 0.074 SIDE CHAIN 1 A ARG 46 0.085 SIDE CHAIN 1 -12.37 1.90 111.40 99.03 A A A CB CA C VAL VAL VAL 43 43 43 N 1 3.76 0.50 120.30 124.06 A A A NE CZ NH1 ARG ARG ARG 46 46 46 N 1 -6.92 0.50 120.30 113.38 A A A NE CZ NH2 ARG ARG ARG 46 46 46 N 1 6.98 0.80 106.30 113.28 A A A CD1 CG CD2 TRP TRP TRP 71 71 71 N 1 -6.26 1.00 110.10 103.84 A A A CG CD1 NE1 TRP TRP TRP 71 71 71 N 1 -5.71 0.80 107.30 101.59 A A A CE2 CD2 CG TRP TRP TRP 71 71 71 N 1 6.07 0.80 106.30 112.37 A A A CD1 CG CD2 TRP TRP TRP 114 114 114 N 1 -5.03 0.80 107.30 102.27 A A A CE2 CD2 CG TRP TRP TRP 114 114 114 N 1 A ASP 24 -67.55 0.11 1 A ASP 82 -164.12 92.87 0.2250000 1.6 6.0 16495 95.7 1 0.0 1.6 6.0 24 986 43 0 919 0.010 1.80 1.53 29.1 1CXC 18286 0.0 1 91.1 model building X-PLOR refinement TNT refinement X-PLOR phasing X-PLOR CYTOCHROME C2, PROTOPORPHYRIN IX CONTAINING FE CRYSTALLIZATION AND X-RAY STRUCTURE DETERMINATION OF CYTOCHROME C2 FROM RHODOBACTER SPHAEROIDES IN THREE CRYSTAL FORMS 1 N N 2 N N 3 N N A PRO 5 A PRO 5 HELX_P A CYS 18 A CYS 18 1 A 14 A GLU 59 A GLU 59 HELX_P A ALA 66 A ALA 66 1 B 8 A GLU 73 A GLU 73 HELX_P A GLN 81 A GLN 81 1 C 9 A PRO 83 A PRO 83 HELX_P A THR 91 A THR 91 1 D 9 A GLU 107 A GLU 107 HELX_P A VAL 120 A VAL 120 1 E 14 covale 1.989 none A CYS 15 A SG CYS 15 1_555 A HEC 125 B CAB HEC 1_555 covale 1.965 none A CYS 18 A SG CYS 18 1_555 A HEC 125 B CAC HEC 1_555 metalc 2.017 A HIS 19 A NE2 HIS 19 1_555 A HEC 125 B FE HEC 1_555 metalc 2.357 A MET 100 A SD MET 100 1_555 A HEC 125 B FE HEC 1_555 ELECTRON TRANSPORT (CYTOCHROME) ELECTRON TRANSPORT (CYTOCHROME) CYC2_RHOSH UNP 1 1 P00095 MKFQVKALAAIAAFAALPALAQEGDPEAGAKAFNQCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGE GMKEAGAKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTFKLKKEADAHNIWAYLQQVAVRP 22 145 1CXC 1 124 P00095 A 1 1 124 2 anti-parallel A ILE 21 A ILE 21 A VAL 22 A VAL 22 A THR 28 A THR 28 A ALA 30 A ALA 30 BINDING SITE FOR RESIDUE HEC A 125 A HEC 125 Software 21 A CYS 15 A CYS 15 21 1_555 A CYS 18 A CYS 18 21 1_555 A HIS 19 A HIS 19 21 1_555 A THR 36 A THR 36 21 1_555 A PRO 38 A PRO 38 21 1_555 A ARG 46 A ARG 46 21 1_555 A ALA 48 A ALA 48 21 1_555 A GLY 49 A GLY 49 21 1_555 A TYR 57 A TYR 57 21 1_555 A GLY 58 A GLY 58 21 1_555 A MET 61 A MET 61 21 1_555 A TRP 71 A TRP 71 21 1_555 A PHE 76 A PHE 76 21 1_555 A TYR 79 A TYR 79 21 1_555 A GLY 98 A GLY 98 21 1_555 A LYS 99 A LYS 99 21 1_555 A MET 100 A MET 100 21 1_555 A PHE 102 A PHE 102 21 1_555 A HOH 138 C HOH 21 1_555 A HOH 141 C HOH 21 1_555 A HOH 142 C HOH 21 1_555 92 P 41 21 2