0.015111
0.000000
0.000000
0.000000
0.015111
0.000000
0.000000
0.000000
0.012702
0.000000
0.000000
0.000000
Lubkowski, J.
Dauter, Z.
Yang, F.
Alexandratos, J.
Wlodawer, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
66.177
66.177
78.730
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H8 O7
192.124
CITRIC ACID
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
O
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
O
N
84
N
C
N
85
N
O
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
R
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
S
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
N
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
S
C
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
C
N
135
N
C
N
136
N
O
N
137
N
O
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
N
N
173
S
C
N
174
N
C
N
175
N
O
N
176
N
C
Y
177
N
C
Y
178
N
N
Y
179
N
C
Y
180
N
C
Y
181
N
N
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
N
N
197
S
C
N
198
N
C
N
199
N
O
N
200
S
C
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
N
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
S
N
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
O
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
R
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
N
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
N
394
N
O
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
N
412
N
C
N
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
doub
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
Y
281
N
doub
Y
282
N
sing
Y
283
N
sing
N
284
N
sing
Y
285
N
doub
N
286
N
sing
Y
287
N
doub
N
288
N
sing
Y
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
Y
378
N
doub
Y
379
N
sing
Y
380
N
sing
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
38
13512
13522
10.1021/bi991362q
10521258
Atomic resolution structures of the core domain of avian sarcoma virus integrase and its D64N mutant.
1999
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
253
333
346
10.1006/jmbi.1995.0556
High Resolution Structure of the Catalytic Domain of Avian Sarcoma Virus Integrase
1995
10.2210/pdb1cxu/pdb
pdb_00001cxu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
IMAGE PLATE
1998-01-31
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
X9B
NSLS
0.98
SYNCHROTRON
NSLS BEAMLINE X9B
17855.441
PROTEIN (AVIAN SARCOMA VIRUS INTEGRASE)
CATALYTIC CORE DOMAIN
INS(P48, L49, R50, E51, N208, L209)
1
man
polymer
192.124
CITRIC ACID
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
203
nat
water
no
no
PLREGRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFT
SKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKT
NL
PLREGRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFT
SKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKT
NL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Alpharetrovirus
ROUS SARCOMA VIRUS, SCHMIDT-RUPPIN B
Escherichia
sample
11876
Avian sarcoma virus
562
Escherichia coli
PRC23IN(52-207)
1
2
49.02
VAPOR DIFFUSION, HANGING DROP
6.2
20% PEG 4000, 10% ISOPROPANOL, 100 MM CITRATE, PH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Data collection
Database references
Derived calculations
1
0
1999-09-08
1
1
2007-10-16
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
SAME PROTEIN AT LOWER RESOLUTION
RCSB
Y
RCSB
1999-08-30
REL
REL
CIT
CITRIC ACID
GOL
GLYCEROL
HOH
water
THE APPARENT DISCREPANCY BETWEEN THE SEQUENCE PRESENTED
HERE AND THE "POL_RSVP" SEQUENCE IS A RESULT OF VIRAL
STRAIN VARIATION. THE STRAIN USED FOR THIS WORK, "ROUS
SARCOMA VIRUS SCHMIDT-RUPPIN B", COMPARED TO "POL-RSVP"
SEQUENCE DIFFERS AT TWO POSITIONS WITH THE CONSERVATIVE
AMINO ACID RESIDUE DIFFERENCES NOTED (VAL->ALA 101 &
ARG->LYS 166).
CIT
300
2
CIT
CIT
300
A
GOL
299
3
GOL
GOL
299
A
HOH
401
4
HOH
HOH
401
A
HOH
402
4
HOH
HOH
402
A
HOH
403
4
HOH
HOH
403
A
HOH
404
4
HOH
HOH
404
A
HOH
405
4
HOH
HOH
405
A
HOH
406
4
HOH
HOH
406
A
HOH
407
4
HOH
HOH
407
A
HOH
408
4
HOH
HOH
408
A
HOH
409
4
HOH
HOH
409
A
HOH
410
4
HOH
HOH
410
A
HOH
411
4
HOH
HOH
411
A
HOH
412
4
HOH
HOH
412
A
HOH
413
4
HOH
HOH
413
A
HOH
414
4
HOH
HOH
414
A
HOH
415
4
HOH
HOH
415
A
HOH
416
4
HOH
HOH
416
A
HOH
417
4
HOH
HOH
417
A
HOH
418
4
HOH
HOH
418
A
HOH
419
4
HOH
HOH
419
A
HOH
420
4
HOH
HOH
420
A
HOH
421
4
HOH
HOH
421
A
HOH
422
4
HOH
HOH
422
A
HOH
423
4
HOH
HOH
423
A
HOH
424
4
HOH
HOH
424
A
HOH
425
4
HOH
HOH
425
A
HOH
426
4
HOH
HOH
426
A
HOH
427
4
HOH
HOH
427
A
HOH
428
4
HOH
HOH
428
A
HOH
429
4
HOH
HOH
429
A
HOH
430
4
HOH
HOH
430
A
HOH
431
4
HOH
HOH
431
A
HOH
432
4
HOH
HOH
432
A
HOH
433
4
HOH
HOH
433
A
HOH
434
4
HOH
HOH
434
A
HOH
435
4
HOH
HOH
435
A
HOH
436
4
HOH
HOH
436
A
HOH
437
4
HOH
HOH
437
A
HOH
438
4
HOH
HOH
438
A
HOH
439
4
HOH
HOH
439
A
HOH
440
4
HOH
HOH
440
A
HOH
441
4
HOH
HOH
441
A
HOH
442
4
HOH
HOH
442
A
HOH
443
4
HOH
HOH
443
A
HOH
444
4
HOH
HOH
444
A
HOH
445
4
HOH
HOH
445
A
HOH
446
4
HOH
HOH
446
A
HOH
447
4
HOH
HOH
447
A
HOH
448
4
HOH
HOH
448
A
HOH
449
4
HOH
HOH
449
A
HOH
450
4
HOH
HOH
450
A
HOH
451
4
HOH
HOH
451
A
HOH
452
4
HOH
HOH
452
A
HOH
453
4
HOH
HOH
453
A
HOH
454
4
HOH
HOH
454
A
HOH
455
4
HOH
HOH
455
A
HOH
456
4
HOH
HOH
456
A
HOH
457
4
HOH
HOH
457
A
HOH
458
4
HOH
HOH
458
A
HOH
459
4
HOH
HOH
459
A
HOH
460
4
HOH
HOH
460
A
HOH
461
4
HOH
HOH
461
A
HOH
462
4
HOH
HOH
462
A
HOH
463
4
HOH
HOH
463
A
HOH
464
4
HOH
HOH
464
A
HOH
465
4
HOH
HOH
465
A
HOH
466
4
HOH
HOH
466
A
HOH
467
4
HOH
HOH
467
A
HOH
468
4
HOH
HOH
468
A
HOH
469
4
HOH
HOH
469
A
HOH
470
4
HOH
HOH
470
A
HOH
471
4
HOH
HOH
471
A
HOH
472
4
HOH
HOH
472
A
HOH
473
4
HOH
HOH
473
A
HOH
474
4
HOH
HOH
474
A
HOH
475
4
HOH
HOH
475
A
HOH
476
4
HOH
HOH
476
A
HOH
477
4
HOH
HOH
477
A
HOH
478
4
HOH
HOH
478
A
HOH
479
4
HOH
HOH
479
A
HOH
480
4
HOH
HOH
480
A
HOH
481
4
HOH
HOH
481
A
HOH
482
4
HOH
HOH
482
A
HOH
483
4
HOH
HOH
483
A
HOH
487
4
HOH
HOH
487
A
HOH
489
4
HOH
HOH
489
A
HOH
490
4
HOH
HOH
490
A
HOH
493
4
HOH
HOH
493
A
HOH
497
4
HOH
HOH
497
A
HOH
499
4
HOH
HOH
499
A
HOH
501
4
HOH
HOH
501
A
HOH
502
4
HOH
HOH
502
A
HOH
504
4
HOH
HOH
504
A
HOH
505
4
HOH
HOH
505
A
HOH
506
4
HOH
HOH
506
A
HOH
508
4
HOH
HOH
508
A
HOH
510
4
HOH
HOH
510
A
HOH
520
4
HOH
HOH
520
A
HOH
531
4
HOH
HOH
531
A
HOH
532
4
HOH
HOH
532
A
HOH
533
4
HOH
HOH
533
A
HOH
538
4
HOH
HOH
538
A
HOH
546
4
HOH
HOH
546
A
HOH
601
4
HOH
HOH
601
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
604
4
HOH
HOH
604
A
HOH
605
4
HOH
HOH
605
A
HOH
606
4
HOH
HOH
606
A
HOH
607
4
HOH
HOH
607
A
HOH
608
4
HOH
HOH
608
A
HOH
609
4
HOH
HOH
609
A
HOH
610
4
HOH
HOH
610
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
613
4
HOH
HOH
613
A
HOH
614
4
HOH
HOH
614
A
HOH
615
4
HOH
HOH
615
A
HOH
616
4
HOH
HOH
616
A
HOH
617
4
HOH
HOH
617
A
HOH
618
4
HOH
HOH
618
A
HOH
619
4
HOH
HOH
619
A
HOH
620
4
HOH
HOH
620
A
HOH
621
4
HOH
HOH
621
A
HOH
622
4
HOH
HOH
622
A
HOH
623
4
HOH
HOH
623
A
HOH
624
4
HOH
HOH
624
A
HOH
625
4
HOH
HOH
625
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
628
4
HOH
HOH
628
A
HOH
629
4
HOH
HOH
629
A
HOH
630
4
HOH
HOH
630
A
HOH
631
4
HOH
HOH
631
A
HOH
632
4
HOH
HOH
632
A
HOH
633
4
HOH
HOH
633
A
HOH
634
4
HOH
HOH
634
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
639
4
HOH
HOH
639
A
HOH
640
4
HOH
HOH
640
A
HOH
641
4
HOH
HOH
641
A
HOH
642
4
HOH
HOH
642
A
HOH
643
4
HOH
HOH
643
A
HOH
644
4
HOH
HOH
644
A
HOH
645
4
HOH
HOH
645
A
HOH
646
4
HOH
HOH
646
A
HOH
647
4
HOH
HOH
647
A
HOH
648
4
HOH
HOH
648
A
HOH
649
4
HOH
HOH
649
A
HOH
650
4
HOH
HOH
650
A
HOH
651
4
HOH
HOH
651
A
HOH
652
4
HOH
HOH
652
A
HOH
653
4
HOH
HOH
653
A
HOH
654
4
HOH
HOH
654
A
HOH
655
4
HOH
HOH
655
A
HOH
656
4
HOH
HOH
656
A
HOH
657
4
HOH
HOH
657
A
HOH
658
4
HOH
HOH
658
A
HOH
659
4
HOH
HOH
659
A
HOH
660
4
HOH
HOH
660
A
HOH
661
4
HOH
HOH
661
A
HOH
662
4
HOH
HOH
662
A
HOH
663
4
HOH
HOH
663
A
HOH
664
4
HOH
HOH
664
A
HOH
665
4
HOH
HOH
665
A
HOH
666
4
HOH
HOH
666
A
HOH
667
4
HOH
HOH
667
A
HOH
668
4
HOH
HOH
668
A
HOH
669
4
HOH
HOH
669
A
HOH
670
4
HOH
HOH
670
A
HOH
671
4
HOH
HOH
671
A
HOH
672
4
HOH
HOH
672
A
HOH
673
4
HOH
HOH
673
A
HOH
674
4
HOH
HOH
674
A
HOH
675
4
HOH
HOH
675
A
HOH
676
4
HOH
HOH
676
A
HOH
677
4
HOH
HOH
677
A
HOH
678
4
HOH
HOH
678
A
HOH
679
4
HOH
HOH
679
A
HOH
680
4
HOH
HOH
680
A
HOH
681
4
HOH
HOH
681
A
HOH
682
4
HOH
HOH
682
A
HOH
683
4
HOH
HOH
683
A
HOH
684
4
HOH
HOH
684
A
HOH
685
4
HOH
HOH
685
A
HOH
686
4
HOH
HOH
686
A
HOH
687
4
HOH
HOH
687
A
HOH
688
4
HOH
HOH
688
A
HOH
689
4
HOH
HOH
689
A
HOH
690
4
HOH
HOH
690
A
HOH
691
4
HOH
HOH
691
A
HOH
692
4
HOH
HOH
692
A
HOH
693
4
HOH
HOH
693
A
HOH
694
4
HOH
HOH
694
A
HOH
695
4
HOH
HOH
695
A
HOH
696
4
HOH
HOH
696
A
HOH
697
4
HOH
HOH
697
A
HOH
698
4
HOH
HOH
698
A
HOH
699
4
HOH
HOH
699
A
HOH
700
4
HOH
HOH
700
A
HOH
701
4
HOH
HOH
701
A
n
1
48
A
n
2
49
A
n
3
50
A
n
4
51
A
n
5
52
A
n
6
53
A
n
7
54
A
n
8
55
A
GLY
56
n
9
GLY
56
A
PRO
57
n
10
PRO
57
A
LEU
58
n
11
LEU
58
A
GLN
59
n
12
GLN
59
A
ILE
60
n
13
ILE
60
A
TRP
61
n
14
TRP
61
A
GLN
62
n
15
GLN
62
A
THR
63
n
16
THR
63
A
ASP
64
n
17
ASP
64
A
PHE
65
n
18
PHE
65
A
THR
66
n
19
THR
66
A
LEU
67
n
20
LEU
67
A
GLU
68
n
21
GLU
68
A
PRO
69
n
22
PRO
69
A
ARG
70
n
23
ARG
70
A
MET
71
n
24
MET
71
A
ALA
72
n
25
ALA
72
A
PRO
73
n
26
PRO
73
A
ARG
74
n
27
ARG
74
A
SER
75
n
28
SER
75
A
TRP
76
n
29
TRP
76
A
LEU
77
n
30
LEU
77
A
ALA
78
n
31
ALA
78
A
VAL
79
n
32
VAL
79
A
THR
80
n
33
THR
80
A
VAL
81
n
34
VAL
81
A
ASP
82
n
35
ASP
82
A
THR
83
n
36
THR
83
A
ALA
84
n
37
ALA
84
A
SER
85
n
38
SER
85
A
SER
86
n
39
SER
86
A
ALA
87
n
40
ALA
87
A
ILE
88
n
41
ILE
88
A
VAL
89
n
42
VAL
89
A
VAL
90
n
43
VAL
90
A
THR
91
n
44
THR
91
A
GLN
92
n
45
GLN
92
A
HIS
93
n
46
HIS
93
A
GLY
94
n
47
GLY
94
A
ARG
95
n
48
ARG
95
A
VAL
96
n
49
VAL
96
A
THR
97
n
50
THR
97
A
SER
98
n
51
SER
98
A
VAL
99
n
52
VAL
99
A
ALA
100
n
53
ALA
100
A
ALA
101
n
54
ALA
101
A
GLN
102
n
55
GLN
102
A
HIS
103
n
56
HIS
103
A
HIS
104
n
57
HIS
104
A
TRP
105
n
58
TRP
105
A
ALA
106
n
59
ALA
106
A
THR
107
n
60
THR
107
A
ALA
108
n
61
ALA
108
A
ILE
109
n
62
ILE
109
A
ALA
110
n
63
ALA
110
A
VAL
111
n
64
VAL
111
A
LEU
112
n
65
LEU
112
A
GLY
113
n
66
GLY
113
A
ARG
114
n
67
ARG
114
A
PRO
115
n
68
PRO
115
A
LYS
116
n
69
LYS
116
A
ALA
117
n
70
ALA
117
A
ILE
118
n
71
ILE
118
A
LYS
119
n
72
LYS
119
A
THR
120
n
73
THR
120
A
ASP
121
n
74
ASP
121
A
ASN
122
n
75
ASN
122
A
GLY
123
n
76
GLY
123
A
SER
124
n
77
SER
124
A
CYS
125
n
78
CYS
125
A
PHE
126
n
79
PHE
126
A
THR
127
n
80
THR
127
A
SER
128
n
81
SER
128
A
LYS
129
n
82
LYS
129
A
SER
130
n
83
SER
130
A
THR
131
n
84
THR
131
A
ARG
132
n
85
ARG
132
A
GLU
133
n
86
GLU
133
A
TRP
134
n
87
TRP
134
A
LEU
135
n
88
LEU
135
A
ALA
136
n
89
ALA
136
A
ARG
137
n
90
ARG
137
A
TRP
138
n
91
TRP
138
A
GLY
139
n
92
GLY
139
A
ILE
140
n
93
ILE
140
A
ALA
141
n
94
ALA
141
A
HIS
142
n
95
HIS
142
A
THR
143
n
96
THR
143
A
THR
144
n
97
THR
144
A
GLY
145
n
98
GLY
145
A
ILE
146
n
99
ILE
146
A
PRO
147
n
100
PRO
147
A
GLY
148
n
101
GLY
148
A
ASN
149
n
102
ASN
149
A
SER
150
n
103
SER
150
A
GLN
151
n
104
GLN
151
A
GLY
152
n
105
GLY
152
A
GLN
153
n
106
GLN
153
A
ALA
154
n
107
ALA
154
A
MET
155
n
108
MET
155
A
VAL
156
n
109
VAL
156
A
GLU
157
n
110
GLU
157
A
ARG
158
n
111
ARG
158
A
ALA
159
n
112
ALA
159
A
ASN
160
n
113
ASN
160
A
ARG
161
n
114
ARG
161
A
LEU
162
n
115
LEU
162
A
LEU
163
n
116
LEU
163
A
LYS
164
n
117
LYS
164
A
ASP
165
n
118
ASP
165
A
LYS
166
n
119
LYS
166
A
ILE
167
n
120
ILE
167
A
ARG
168
n
121
ARG
168
A
VAL
169
n
122
VAL
169
A
LEU
170
n
123
LEU
170
A
ALA
171
n
124
ALA
171
A
GLU
172
n
125
GLU
172
A
GLY
173
n
126
GLY
173
A
ASP
174
n
127
ASP
174
A
GLY
175
n
128
GLY
175
A
PHE
176
n
129
PHE
176
A
MET
177
n
130
MET
177
A
LYS
178
n
131
LYS
178
A
ARG
179
n
132
ARG
179
A
ILE
180
n
133
ILE
180
A
PRO
181
n
134
PRO
181
A
THR
182
n
135
THR
182
A
SER
183
n
136
SER
183
A
LYS
184
n
137
LYS
184
A
GLN
185
n
138
GLN
185
A
GLY
186
n
139
GLY
186
A
GLU
187
n
140
GLU
187
A
LEU
188
n
141
LEU
188
A
LEU
189
n
142
LEU
189
A
ALA
190
n
143
ALA
190
A
LYS
191
n
144
LYS
191
A
ALA
192
n
145
ALA
192
A
MET
193
n
146
MET
193
A
TYR
194
n
147
TYR
194
A
ALA
195
n
148
ALA
195
A
LEU
196
n
149
LEU
196
A
ASN
197
n
150
ASN
197
A
HIS
198
n
151
HIS
198
A
n
152
199
A
n
153
200
A
n
154
201
A
n
155
202
A
n
156
203
A
n
157
204
A
n
158
205
A
n
159
206
A
n
160
207
A
n
161
208
A
n
162
209
A
0.183
0.187
0.
0.
3166
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
78.7300000000
A
O
VAL
89
A
O
VAL
42
A
N
THR
80
A
N
THR
33
A
O
LEU
77
A
O
LEU
30
A
N
THR
66
A
N
THR
19
A
O
TRP
61
A
O
TRP
14
A
N
ALA
117
A
N
ALA
70
A
O
ILE
118
A
O
ILE
71
A
N
ALA
141
A
N
ALA
94
1
A
CG
ARG
95
A
CG
ARG
48
0
Y
1
A
CD
ARG
95
A
CD
ARG
48
0
Y
1
A
NE
ARG
95
A
NE
ARG
48
0
Y
1
A
CZ
ARG
95
A
CZ
ARG
48
0
Y
1
A
NH1
ARG
95
A
NH1
ARG
48
0
Y
1
A
NH2
ARG
95
A
NH2
ARG
48
0
Y
1
A
CG
LYS
129
A
CG
LYS
82
0
Y
1
A
CD
LYS
129
A
CD
LYS
82
0
Y
1
A
CE
LYS
129
A
CE
LYS
82
0
Y
1
A
NZ
LYS
129
A
NZ
LYS
82
0
Y
1
A
NE
ARG
132
A
NE
ARG
85
0
Y
1
A
CZ
ARG
132
A
CZ
ARG
85
0
Y
1
A
NH1
ARG
132
A
NH1
ARG
85
0
Y
1
A
NH2
ARG
132
A
NH2
ARG
85
0
Y
1
A
PRO
48
A
PRO
1
1
Y
1
A
LEU
49
A
LEU
2
1
Y
1
A
ARG
50
A
ARG
3
1
Y
1
A
GLU
51
A
GLU
4
1
Y
1
A
GLY
52
A
GLY
5
1
Y
1
A
ARG
53
A
ARG
6
1
Y
1
A
GLY
54
A
GLY
7
1
Y
1
A
LEU
55
A
LEU
8
1
Y
1
A
PHE
199
A
PHE
152
1
Y
1
A
GLU
200
A
GLU
153
1
Y
1
A
ARG
201
A
ARG
154
1
Y
1
A
GLY
202
A
GLY
155
1
Y
1
A
GLU
203
A
GLU
156
1
Y
1
A
ASN
204
A
ASN
157
1
Y
1
A
THR
205
A
THR
158
1
Y
1
A
LYS
206
A
LYS
159
1
Y
1
A
THR
207
A
THR
160
1
Y
1
A
ASN
208
A
ASN
161
1
Y
1
A
LEU
209
A
LEU
162
1
Y
1
A
A
OG
O
SER
HOH
124
663
1.59
1
A
A
NE
O
ARG
HOH
132
487
1.65
1
A
A
NE2
O
GLN
HOH
102
410
1.72
1
A
A
O
O
ARG
HOH
137
621
1.74
1
A
A
O
O
SER
HOH
130
427
1.82
1
A
A
O
O
ASN
HOH
122
657
1.84
1
A
A
OE1
O
GLN
HOH
153
411
1.87
1
A
A
OD2
O
ASP
HOH
121
489
2.04
1
A
A
NE
O
ARG
HOH
132
468
2.05
1
A
A
OG
O
SER
HOH
130
456
2.06
1
A
A
ND1
O
HIS
HOH
142
490
2.08
1
A
A
OG1
O
THR
HOH
127
647
2.10
1
A
A
CG
O
GLU
HOH
133
422
2.11
1
A
A
OE1
O
GLN
HOH
151
656
2.11
1
A
A
OG1
O
THR
HOH
97
448
2.13
1
A
A
O
O
PHE
HOH
126
620
2.17
1
A
A
OG
O
SER
HOH
183
458
2.19
1
6.07
0.90
118.30
124.37
A
A
A
CB
CG
OD1
ASP
ASP
ASP
64
64
64
N
1
3.74
0.50
120.30
124.04
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
179
179
179
N
1
A
A
O
O
HOH
HOH
442
651
1.67
1_555
3_644
1
A
A
O
O
HOH
HOH
425
634
1.74
1_555
4_565
1
A
A
O
O
HOH
HOH
480
601
1.81
1_555
3_644
1
A
A
O
O
HOH
HOH
625
651
2.16
1_555
3_644
1
A
GLN
153
-142.23
-10.23
1
A
LYS
178
-134.98
-119.90
0.2214
0.187
0.187
0.187
1.42
10.00
536
1142
34287
34287
467
99.1
RANDOM
1
0.0
ENGH AND HUBER
0.
1308.
1.42
10.00
203
1323
19
0
1101
0.01
0.02
0.00
0.025
0.06
0.06
0.01
0.00
0.05
0.00
19.9
1.42
13.0
1CXU
34367
34287
-3
0.046
1
15.7
5.55
99.0
0.050
1.42
1.47
1
4.3
98.9
model building
X-PLOR
refinement
SHELXL-97
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
1.42A RESOLUTION ASV INTEGRASE CORE DOMAIN FROM CITRATE
1
N
N
2
N
N
3
N
N
4
N
N
A
PRO
69
A
PRO
22
HELX_P
A
MET
71
A
MET
24
5
1
3
A
SER
98
A
SER
51
HELX_P
A
LEU
112
A
LEU
65
1
2
15
A
SER
124
A
SER
77
HELX_P
A
THR
127
A
THR
80
1
3
4
A
LYS
129
A
LYS
82
HELX_P
A
TRP
138
A
TRP
91
1
4
10
A
ALA
154
A
ALA
107
HELX_P
A
ASP
174
A
ASP
127
1
5
21
A
THR
182
A
THR
135
HELX_P
A
ASN
197
A
ASN
150
1
6
16
TRANSFERASE
MIXED BETA-SHEET SURROUNDED BY ALPHA-HELICES, TRANSFERASE
A
ALA
72
A
ALA
25
1
A
PRO
73
A
PRO
26
3.50
POL_RSVP
UNP
1
P03354
624
779
1CXU
52
207
P03354
A
1
5
160
1
insertion
PRO
48
1CXU
A
P03354
UNP
1
1
insertion
LEU
49
1CXU
A
P03354
UNP
2
1
insertion
ARG
50
1CXU
A
P03354
UNP
3
1
insertion
GLU
51
1CXU
A
P03354
UNP
4
1
PRO
conflict
GLY
52
1CXU
A
P03354
UNP
624
5
1
VAL
SEE REMARK 999
ALA
101
1CXU
A
P03354
UNP
673
54
1
ARG
SEE REMARK 999
LYS
166
1CXU
A
P03354
UNP
738
119
1
insertion
ASN
208
1CXU
A
P03354
UNP
161
1
insertion
LEU
209
1CXU
A
P03354
UNP
162
5
anti-parallel
anti-parallel
parallel
parallel
A
ILE
88
A
ILE
41
A
HIS
93
A
HIS
46
A
TRP
76
A
TRP
29
A
ASP
82
A
ASP
35
A
ILE
60
A
ILE
13
A
LEU
67
A
LEU
20
A
ALA
117
A
ALA
70
A
LYS
119
A
LYS
72
A
ALA
141
A
ALA
94
A
THR
143
A
THR
96
Author
3
BINDING SITE FOR RESIDUE CIT A 300
A
CIT
300
Software
12
BINDING SITE FOR RESIDUE GOL A 299
A
GOL
299
Software
6
A
ASP
64
A
ASP
17
3
1_555
A
ASP
121
A
ASP
74
3
1_555
A
GLU
157
A
GLU
110
3
1_555
A
ARG
132
A
ARG
85
12
6_566
A
ARG
179
A
ARG
132
12
1_555
A
PRO
181
A
PRO
134
12
1_555
A
THR
182
A
THR
135
12
1_555
A
SER
183
A
SER
136
12
1_555
A
HOH
602
D
HOH
12
6_566
A
HOH
607
D
HOH
12
1_555
A
HOH
608
D
HOH
12
6_566
A
HOH
629
D
HOH
12
6_566
A
HOH
641
D
HOH
12
1_555
A
HOH
644
D
HOH
12
1_555
A
HOH
688
D
HOH
12
1_555
A
VAL
90
A
VAL
43
6
1_555
A
THR
91
A
THR
44
6
1_555
A
THR
107
A
THR
60
6
7_556
A
MET
193
A
MET
146
6
1_555
A
HOH
445
D
HOH
6
1_555
A
HOH
466
D
HOH
6
1_555
96
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