1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kloiber, K.
Weiskirchen, R.
Kraeutler, B.
Bister, K.
Konrat, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
292
893
908
10.1006/jmbi.1999.3118
10525413
Mutational analysis and NMR spectroscopy of quail cysteine and glycine-rich protein CRP2 reveal an intrinsic segmental flexibility of LIM domains.
1999
10.2210/pdb1cxx/pdb
pdb_00001cxx
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
12039.655
CYSTEINE AND GLYCINE-RICH PROTEIN CRP2
CARBOXYL-TERMINAL LIM-DOMAIN
R122A
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
no
no
MDRGERLGIKPESSPSPHRPTTNPNTSKFAQKFGGAEKCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTE
KEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ
MDRGERLGIKPESSPSPHRPTTNPNTSKFAQKFGGAEKCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTE
KEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Japanese quail
Coturnix
Escherichia
sample
FIBROBLAST
93934
Coturnix japonica
562
Escherichia coli
PET3D
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1999-09-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-11-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RELATED WILD-TYPE PEPTIDE: CARBOXYLTERMINAL LIM DOMAIN OF QCRP2
RCSB
Y
RCSB
1999-08-31
REL
ZN
ZINC ION
THIS STRUCTURE WAS DETERMINED USING STANDARD 15N-EDITED SPECTRA AND HOMONUCLEAR 2D SPECTRA
STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS,STRUCTURES WITH THE LOWEST ENERGY
11
1
2D NOESY
3D_15N-SEPARATED_NOESY
3D-15N-SEPARATED TOCSY
HNHA
7.0
AMBIENT
299
K
THE STRUCTURE IS BASED ON 340 NOE-DERIVED DISTANCE RESTRAINTS AS WELL AS 16 DISTANCE RESTRAINTS DERIVED FROM HYDROGEN BONDS
SIMULATED ANNEALING, MOLECULAR DYNAMICS REFINEMENT, ENERGY MINIMIZATION
1
fewest violations,lowest energy
1.1MM QCRP2(LIM2)R122A 15N; 20MM POTASSIUM PHOSPHATE; 50MM POTASSIUM CHLORIDE; 0.5MM DTT;
KRAULIS, P. J.
data analysis
ANSIG
3.3
BRUNGER
structure solution
X-PLOR
3.1
BRUNGER
refinement
X-PLOR
3.1
DELAGLIO, F., GRZESISEK, S., VUISTER, G., ZHU, G. PFEIFER, J., BAX, A.
processing
NMRPipe
1.7
500
Varian
UNITYPLUS
ZN1
1
2
ZN
ZN
1
A
ZN1
2
2
ZN
ZN
2
A
n
1
82
A
n
2
83
A
n
3
84
A
n
4
85
A
n
5
86
A
n
6
87
A
n
7
88
A
n
8
89
A
n
9
90
A
n
10
91
A
n
11
92
A
n
12
93
A
n
13
94
A
n
14
95
A
n
15
96
A
n
16
97
A
n
17
98
A
n
18
99
A
n
19
100
A
n
20
101
A
n
21
102
A
n
22
103
A
n
23
104
A
n
24
105
A
n
25
106
A
n
26
107
A
n
27
108
A
n
28
109
A
n
29
110
A
n
30
111
A
n
31
112
A
n
32
113
A
n
33
114
A
n
34
115
A
n
35
116
A
ALA
117
n
36
ALA
117
A
GLU
118
n
37
GLU
118
A
LYS
119
n
38
LYS
119
A
CYS
120
n
39
CYS
120
A
SER
121
n
40
SER
121
A
ALA
122
n
41
ALA
122
A
CYS
123
n
42
CYS
123
A
GLY
124
n
43
GLY
124
A
ASP
125
n
44
ASP
125
A
SER
126
n
45
SER
126
A
VAL
127
n
46
VAL
127
A
TYR
128
n
47
TYR
128
A
ALA
129
n
48
ALA
129
A
ALA
130
n
49
ALA
130
A
GLU
131
n
50
GLU
131
A
LYS
132
n
51
LYS
132
A
VAL
133
n
52
VAL
133
A
ILE
134
n
53
ILE
134
A
GLY
135
n
54
GLY
135
A
ALA
136
n
55
ALA
136
A
GLY
137
n
56
GLY
137
A
LYS
138
n
57
LYS
138
A
PRO
139
n
58
PRO
139
A
TRP
140
n
59
TRP
140
A
HIS
141
n
60
HIS
141
A
LYS
142
n
61
LYS
142
A
ASN
143
n
62
ASN
143
A
CYS
144
n
63
CYS
144
A
PHE
145
n
64
PHE
145
A
ARG
146
n
65
ARG
146
A
CYS
147
n
66
CYS
147
A
ALA
148
n
67
ALA
148
A
LYS
149
n
68
LYS
149
A
CYS
150
n
69
CYS
150
A
GLY
151
n
70
GLY
151
A
LYS
152
n
71
LYS
152
A
SER
153
n
72
SER
153
A
LEU
154
n
73
LEU
154
A
GLU
155
n
74
GLU
155
A
SER
156
n
75
SER
156
A
THR
157
n
76
THR
157
A
THR
158
n
77
THR
158
A
LEU
159
n
78
LEU
159
A
THR
160
n
79
THR
160
A
GLU
161
n
80
GLU
161
A
LYS
162
n
81
LYS
162
A
GLU
163
n
82
GLU
163
A
GLY
164
n
83
GLY
164
A
GLU
165
n
84
GLU
165
A
ILE
166
n
85
ILE
166
A
TYR
167
n
86
TYR
167
A
CYS
168
n
87
CYS
168
A
LYS
169
n
88
LYS
169
A
GLY
170
n
89
GLY
170
A
CYS
171
n
90
CYS
171
A
TYR
172
n
91
TYR
172
A
ALA
173
n
92
ALA
173
A
LYS
174
n
93
LYS
174
A
ASN
175
n
94
ASN
175
A
n
95
176
A
n
96
177
A
n
97
178
A
n
98
179
A
n
99
180
A
n
100
181
A
n
101
182
A
n
102
183
A
n
103
184
A
n
104
185
A
n
105
186
A
n
106
187
A
n
107
188
A
n
108
189
A
n
109
190
A
n
110
191
A
n
111
192
A
n
112
193
A
n
113
194
A
author_defined_assembly
1
monomeric
A
CYS
120
A
SG
CYS
39
1_555
A
ZN
1
B
ZN
ZN
1_555
A
CYS
123
A
SG
CYS
42
1_555
107.4
A
CYS
120
A
SG
CYS
39
1_555
A
ZN
1
B
ZN
ZN
1_555
A
HIS
141
A
ND1
HIS
60
1_555
107.1
A
CYS
123
A
SG
CYS
42
1_555
A
ZN
1
B
ZN
ZN
1_555
A
HIS
141
A
ND1
HIS
60
1_555
107.6
A
CYS
120
A
SG
CYS
39
1_555
A
ZN
1
B
ZN
ZN
1_555
A
CYS
144
A
SG
CYS
63
1_555
111.2
A
CYS
123
A
SG
CYS
42
1_555
A
ZN
1
B
ZN
ZN
1_555
A
CYS
144
A
SG
CYS
63
1_555
111.0
A
HIS
141
A
ND1
HIS
60
1_555
A
ZN
1
B
ZN
ZN
1_555
A
CYS
144
A
SG
CYS
63
1_555
112.3
A
CYS
147
A
SG
CYS
66
1_555
A
ZN
2
C
ZN
ZN
1_555
A
CYS
150
A
SG
CYS
69
1_555
108.6
A
CYS
147
A
SG
CYS
66
1_555
A
ZN
2
C
ZN
ZN
1_555
A
CYS
168
A
SG
CYS
87
1_555
110.6
A
CYS
150
A
SG
CYS
69
1_555
A
ZN
2
C
ZN
ZN
1_555
A
CYS
168
A
SG
CYS
87
1_555
111.1
A
CYS
147
A
SG
CYS
66
1_555
A
ZN
2
C
ZN
ZN
1_555
A
CYS
171
A
SG
CYS
90
1_555
111.9
A
CYS
150
A
SG
CYS
69
1_555
A
ZN
2
C
ZN
ZN
1_555
A
CYS
171
A
SG
CYS
90
1_555
109.1
A
CYS
168
A
SG
CYS
87
1_555
A
ZN
2
C
ZN
ZN
1_555
A
CYS
171
A
SG
CYS
90
1_555
105.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
133
A
O
VAL
52
A
N
TRP
140
A
N
TRP
59
A
N
LYS
162
A
N
LYS
81
A
O
GLU
165
A
O
GLU
84
1
A
MET
82
A
MET
1
1
Y
1
A
ASP
83
A
ASP
2
1
Y
1
A
ARG
84
A
ARG
3
1
Y
1
A
GLY
85
A
GLY
4
1
Y
1
A
GLU
86
A
GLU
5
1
Y
1
A
ARG
87
A
ARG
6
1
Y
1
A
LEU
88
A
LEU
7
1
Y
1
A
GLY
89
A
GLY
8
1
Y
1
A
ILE
90
A
ILE
9
1
Y
1
A
LYS
91
A
LYS
10
1
Y
1
A
PRO
92
A
PRO
11
1
Y
1
A
GLU
93
A
GLU
12
1
Y
1
A
SER
94
A
SER
13
1
Y
1
A
SER
95
A
SER
14
1
Y
1
A
PRO
96
A
PRO
15
1
Y
1
A
SER
97
A
SER
16
1
Y
1
A
PRO
98
A
PRO
17
1
Y
1
A
HIS
99
A
HIS
18
1
Y
1
A
ARG
100
A
ARG
19
1
Y
1
A
PRO
101
A
PRO
20
1
Y
1
A
THR
102
A
THR
21
1
Y
1
A
THR
103
A
THR
22
1
Y
1
A
ASN
104
A
ASN
23
1
Y
1
A
PRO
105
A
PRO
24
1
Y
1
A
ASN
106
A
ASN
25
1
Y
1
A
THR
107
A
THR
26
1
Y
1
A
SER
108
A
SER
27
1
Y
1
A
LYS
109
A
LYS
28
1
Y
1
A
PHE
110
A
PHE
29
1
Y
1
A
ALA
111
A
ALA
30
1
Y
1
A
GLN
112
A
GLN
31
1
Y
1
A
LYS
113
A
LYS
32
1
Y
1
A
PHE
114
A
PHE
33
1
Y
1
A
GLY
115
A
GLY
34
1
Y
1
A
GLY
116
A
GLY
35
1
Y
1
A
PHE
176
A
PHE
95
1
Y
1
A
GLY
177
A
GLY
96
1
Y
1
A
PRO
178
A
PRO
97
1
Y
1
A
LYS
179
A
LYS
98
1
Y
1
A
GLY
180
A
GLY
99
1
Y
1
A
PHE
181
A
PHE
100
1
Y
1
A
GLY
182
A
GLY
101
1
Y
1
A
TYR
183
A
TYR
102
1
Y
1
A
GLY
184
A
GLY
103
1
Y
1
A
GLN
185
A
GLN
104
1
Y
1
A
GLY
186
A
GLY
105
1
Y
1
A
ALA
187
A
ALA
106
1
Y
1
A
GLY
188
A
GLY
107
1
Y
1
A
ALA
189
A
ALA
108
1
Y
1
A
LEU
190
A
LEU
109
1
Y
1
A
VAL
191
A
VAL
110
1
Y
1
A
HIS
192
A
HIS
111
1
Y
1
A
ALA
193
A
ALA
112
1
Y
1
A
GLN
194
A
GLN
113
1
Y
1
A
TYR
128
-79.05
-96.07
1
A
ALA
129
-171.90
-56.56
1
A
ALA
130
-114.56
69.76
1
A
GLU
131
-164.94
-62.58
1
A
ALA
136
63.20
83.08
1
A
LYS
138
-54.11
107.19
1
A
LYS
149
-98.08
-64.58
1
A
GLU
155
-170.65
88.35
1
A
LEU
159
67.64
132.04
1
A
GLU
163
-92.02
33.32
1
A
GLU
165
140.10
-166.08
MUTANT R122A OF QUAIL CYSTEINE AND GLYCINE-RICH PROTEIN, NMR, MINIMIZED STRUCTURE
1
N
N
2
N
N
2
N
N
A
CYS
168
A
CYS
87
HELX_P
A
ASN
175
A
ASN
94
1
1
8
metalc
2.292
A
ZN
1
B
ZN
ZN
1_555
A
CYS
120
A
SG
CYS
39
1_555
metalc
2.301
A
ZN
1
B
ZN
ZN
1_555
A
CYS
123
A
SG
CYS
42
1_555
metalc
2.007
A
ZN
1
B
ZN
ZN
1_555
A
HIS
141
A
ND1
HIS
60
1_555
metalc
2.300
A
ZN
1
B
ZN
ZN
1_555
A
CYS
144
A
SG
CYS
63
1_555
metalc
2.296
A
ZN
2
C
ZN
ZN
1_555
A
CYS
147
A
SG
CYS
66
1_555
metalc
2.300
A
ZN
2
C
ZN
ZN
1_555
A
CYS
150
A
SG
CYS
69
1_555
metalc
2.298
A
ZN
2
C
ZN
ZN
1_555
A
CYS
168
A
SG
CYS
87
1_555
metalc
2.292
A
ZN
2
C
ZN
ZN
1_555
A
CYS
171
A
SG
CYS
90
1_555
SIGNALING PROTEIN
LIM DOMAIN CONTAINING PROTEINS, METAL-BINDING PROTEIN, SIGNALING PROTEIN
CSRP2_COTJA
UNP
1
Q05158
82
194
1CXX
82
194
Q05158
A
1
1
113
1
ARG
engineered mutation
ALA
122
1CXX
A
Q05158
UNP
122
41
2
2
anti-parallel
anti-parallel
A
VAL
133
A
VAL
52
A
ILE
134
A
ILE
53
A
PRO
139
A
PRO
58
A
TRP
140
A
TRP
59
A
GLU
161
A
GLU
80
A
LYS
162
A
LYS
81
A
GLU
165
A
GLU
84
A
ILE
166
A
ILE
85
BINDING SITE FOR RESIDUE ZN A 1
A
ZN
1
Software
4
BINDING SITE FOR RESIDUE ZN A 2
A
ZN
2
Software
4
A
CYS
120
A
CYS
39
4
1_555
A
CYS
123
A
CYS
42
4
1_555
A
HIS
141
A
HIS
60
4
1_555
A
CYS
144
A
CYS
63
4
1_555
A
CYS
147
A
CYS
66
4
1_555
A
CYS
150
A
CYS
69
4
1_555
A
CYS
168
A
CYS
87
4
1_555
A
CYS
171
A
CYS
90
4
1_555
1
P 1