1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kloiber, K. Weiskirchen, R. Kraeutler, B. Bister, K. Konrat, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer UK J.Mol.Biol. JMOBAK 0070 0022-2836 292 893 908 10.1006/jmbi.1999.3118 10525413 Mutational analysis and NMR spectroscopy of quail cysteine and glycine-rich protein CRP2 reveal an intrinsic segmental flexibility of LIM domains. 1999 10.2210/pdb1cxx/pdb pdb_00001cxx 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 12039.655 CYSTEINE AND GLYCINE-RICH PROTEIN CRP2 CARBOXYL-TERMINAL LIM-DOMAIN R122A 1 man polymer 65.409 ZINC ION 2 syn non-polymer no no MDRGERLGIKPESSPSPHRPTTNPNTSKFAQKFGGAEKCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTE KEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ MDRGERLGIKPESSPSPHRPTTNPNTSKFAQKFGGAEKCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTE KEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Japanese quail Coturnix Escherichia sample FIBROBLAST 93934 Coturnix japonica 562 Escherichia coli PET3D database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1999-09-08 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-11-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RELATED WILD-TYPE PEPTIDE: CARBOXYLTERMINAL LIM DOMAIN OF QCRP2 RCSB Y RCSB 1999-08-31 REL ZN ZINC ION THIS STRUCTURE WAS DETERMINED USING STANDARD 15N-EDITED SPECTRA AND HOMONUCLEAR 2D SPECTRA STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS,STRUCTURES WITH THE LOWEST ENERGY 11 1 2D NOESY 3D_15N-SEPARATED_NOESY 3D-15N-SEPARATED TOCSY HNHA 7.0 AMBIENT 299 K THE STRUCTURE IS BASED ON 340 NOE-DERIVED DISTANCE RESTRAINTS AS WELL AS 16 DISTANCE RESTRAINTS DERIVED FROM HYDROGEN BONDS SIMULATED ANNEALING, MOLECULAR DYNAMICS REFINEMENT, ENERGY MINIMIZATION 1 fewest violations,lowest energy 1.1MM QCRP2(LIM2)R122A 15N; 20MM POTASSIUM PHOSPHATE; 50MM POTASSIUM CHLORIDE; 0.5MM DTT; KRAULIS, P. J. data analysis ANSIG 3.3 BRUNGER structure solution X-PLOR 3.1 BRUNGER refinement X-PLOR 3.1 DELAGLIO, F., GRZESISEK, S., VUISTER, G., ZHU, G. PFEIFER, J., BAX, A. processing NMRPipe 1.7 500 Varian UNITYPLUS ZN1 1 2 ZN ZN 1 A ZN1 2 2 ZN ZN 2 A n 1 82 A n 2 83 A n 3 84 A n 4 85 A n 5 86 A n 6 87 A n 7 88 A n 8 89 A n 9 90 A n 10 91 A n 11 92 A n 12 93 A n 13 94 A n 14 95 A n 15 96 A n 16 97 A n 17 98 A n 18 99 A n 19 100 A n 20 101 A n 21 102 A n 22 103 A n 23 104 A n 24 105 A n 25 106 A n 26 107 A n 27 108 A n 28 109 A n 29 110 A n 30 111 A n 31 112 A n 32 113 A n 33 114 A n 34 115 A n 35 116 A ALA 117 n 36 ALA 117 A GLU 118 n 37 GLU 118 A LYS 119 n 38 LYS 119 A CYS 120 n 39 CYS 120 A SER 121 n 40 SER 121 A ALA 122 n 41 ALA 122 A CYS 123 n 42 CYS 123 A GLY 124 n 43 GLY 124 A ASP 125 n 44 ASP 125 A SER 126 n 45 SER 126 A VAL 127 n 46 VAL 127 A TYR 128 n 47 TYR 128 A ALA 129 n 48 ALA 129 A ALA 130 n 49 ALA 130 A GLU 131 n 50 GLU 131 A LYS 132 n 51 LYS 132 A VAL 133 n 52 VAL 133 A ILE 134 n 53 ILE 134 A GLY 135 n 54 GLY 135 A ALA 136 n 55 ALA 136 A GLY 137 n 56 GLY 137 A LYS 138 n 57 LYS 138 A PRO 139 n 58 PRO 139 A TRP 140 n 59 TRP 140 A HIS 141 n 60 HIS 141 A LYS 142 n 61 LYS 142 A ASN 143 n 62 ASN 143 A CYS 144 n 63 CYS 144 A PHE 145 n 64 PHE 145 A ARG 146 n 65 ARG 146 A CYS 147 n 66 CYS 147 A ALA 148 n 67 ALA 148 A LYS 149 n 68 LYS 149 A CYS 150 n 69 CYS 150 A GLY 151 n 70 GLY 151 A LYS 152 n 71 LYS 152 A SER 153 n 72 SER 153 A LEU 154 n 73 LEU 154 A GLU 155 n 74 GLU 155 A SER 156 n 75 SER 156 A THR 157 n 76 THR 157 A THR 158 n 77 THR 158 A LEU 159 n 78 LEU 159 A THR 160 n 79 THR 160 A GLU 161 n 80 GLU 161 A LYS 162 n 81 LYS 162 A GLU 163 n 82 GLU 163 A GLY 164 n 83 GLY 164 A GLU 165 n 84 GLU 165 A ILE 166 n 85 ILE 166 A TYR 167 n 86 TYR 167 A CYS 168 n 87 CYS 168 A LYS 169 n 88 LYS 169 A GLY 170 n 89 GLY 170 A CYS 171 n 90 CYS 171 A TYR 172 n 91 TYR 172 A ALA 173 n 92 ALA 173 A LYS 174 n 93 LYS 174 A ASN 175 n 94 ASN 175 A n 95 176 A n 96 177 A n 97 178 A n 98 179 A n 99 180 A n 100 181 A n 101 182 A n 102 183 A n 103 184 A n 104 185 A n 105 186 A n 106 187 A n 107 188 A n 108 189 A n 109 190 A n 110 191 A n 111 192 A n 112 193 A n 113 194 A author_defined_assembly 1 monomeric A CYS 120 A SG CYS 39 1_555 A ZN 1 B ZN ZN 1_555 A CYS 123 A SG CYS 42 1_555 107.4 A CYS 120 A SG CYS 39 1_555 A ZN 1 B ZN ZN 1_555 A HIS 141 A ND1 HIS 60 1_555 107.1 A CYS 123 A SG CYS 42 1_555 A ZN 1 B ZN ZN 1_555 A HIS 141 A ND1 HIS 60 1_555 107.6 A CYS 120 A SG CYS 39 1_555 A ZN 1 B ZN ZN 1_555 A CYS 144 A SG CYS 63 1_555 111.2 A CYS 123 A SG CYS 42 1_555 A ZN 1 B ZN ZN 1_555 A CYS 144 A SG CYS 63 1_555 111.0 A HIS 141 A ND1 HIS 60 1_555 A ZN 1 B ZN ZN 1_555 A CYS 144 A SG CYS 63 1_555 112.3 A CYS 147 A SG CYS 66 1_555 A ZN 2 C ZN ZN 1_555 A CYS 150 A SG CYS 69 1_555 108.6 A CYS 147 A SG CYS 66 1_555 A ZN 2 C ZN ZN 1_555 A CYS 168 A SG CYS 87 1_555 110.6 A CYS 150 A SG CYS 69 1_555 A ZN 2 C ZN ZN 1_555 A CYS 168 A SG CYS 87 1_555 111.1 A CYS 147 A SG CYS 66 1_555 A ZN 2 C ZN ZN 1_555 A CYS 171 A SG CYS 90 1_555 111.9 A CYS 150 A SG CYS 69 1_555 A ZN 2 C ZN ZN 1_555 A CYS 171 A SG CYS 90 1_555 109.1 A CYS 168 A SG CYS 87 1_555 A ZN 2 C ZN ZN 1_555 A CYS 171 A SG CYS 90 1_555 105.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 133 A O VAL 52 A N TRP 140 A N TRP 59 A N LYS 162 A N LYS 81 A O GLU 165 A O GLU 84 1 A MET 82 A MET 1 1 Y 1 A ASP 83 A ASP 2 1 Y 1 A ARG 84 A ARG 3 1 Y 1 A GLY 85 A GLY 4 1 Y 1 A GLU 86 A GLU 5 1 Y 1 A ARG 87 A ARG 6 1 Y 1 A LEU 88 A LEU 7 1 Y 1 A GLY 89 A GLY 8 1 Y 1 A ILE 90 A ILE 9 1 Y 1 A LYS 91 A LYS 10 1 Y 1 A PRO 92 A PRO 11 1 Y 1 A GLU 93 A GLU 12 1 Y 1 A SER 94 A SER 13 1 Y 1 A SER 95 A SER 14 1 Y 1 A PRO 96 A PRO 15 1 Y 1 A SER 97 A SER 16 1 Y 1 A PRO 98 A PRO 17 1 Y 1 A HIS 99 A HIS 18 1 Y 1 A ARG 100 A ARG 19 1 Y 1 A PRO 101 A PRO 20 1 Y 1 A THR 102 A THR 21 1 Y 1 A THR 103 A THR 22 1 Y 1 A ASN 104 A ASN 23 1 Y 1 A PRO 105 A PRO 24 1 Y 1 A ASN 106 A ASN 25 1 Y 1 A THR 107 A THR 26 1 Y 1 A SER 108 A SER 27 1 Y 1 A LYS 109 A LYS 28 1 Y 1 A PHE 110 A PHE 29 1 Y 1 A ALA 111 A ALA 30 1 Y 1 A GLN 112 A GLN 31 1 Y 1 A LYS 113 A LYS 32 1 Y 1 A PHE 114 A PHE 33 1 Y 1 A GLY 115 A GLY 34 1 Y 1 A GLY 116 A GLY 35 1 Y 1 A PHE 176 A PHE 95 1 Y 1 A GLY 177 A GLY 96 1 Y 1 A PRO 178 A PRO 97 1 Y 1 A LYS 179 A LYS 98 1 Y 1 A GLY 180 A GLY 99 1 Y 1 A PHE 181 A PHE 100 1 Y 1 A GLY 182 A GLY 101 1 Y 1 A TYR 183 A TYR 102 1 Y 1 A GLY 184 A GLY 103 1 Y 1 A GLN 185 A GLN 104 1 Y 1 A GLY 186 A GLY 105 1 Y 1 A ALA 187 A ALA 106 1 Y 1 A GLY 188 A GLY 107 1 Y 1 A ALA 189 A ALA 108 1 Y 1 A LEU 190 A LEU 109 1 Y 1 A VAL 191 A VAL 110 1 Y 1 A HIS 192 A HIS 111 1 Y 1 A ALA 193 A ALA 112 1 Y 1 A GLN 194 A GLN 113 1 Y 1 A TYR 128 -79.05 -96.07 1 A ALA 129 -171.90 -56.56 1 A ALA 130 -114.56 69.76 1 A GLU 131 -164.94 -62.58 1 A ALA 136 63.20 83.08 1 A LYS 138 -54.11 107.19 1 A LYS 149 -98.08 -64.58 1 A GLU 155 -170.65 88.35 1 A LEU 159 67.64 132.04 1 A GLU 163 -92.02 33.32 1 A GLU 165 140.10 -166.08 MUTANT R122A OF QUAIL CYSTEINE AND GLYCINE-RICH PROTEIN, NMR, MINIMIZED STRUCTURE 1 N N 2 N N 2 N N A CYS 168 A CYS 87 HELX_P A ASN 175 A ASN 94 1 1 8 metalc 2.292 A ZN 1 B ZN ZN 1_555 A CYS 120 A SG CYS 39 1_555 metalc 2.301 A ZN 1 B ZN ZN 1_555 A CYS 123 A SG CYS 42 1_555 metalc 2.007 A ZN 1 B ZN ZN 1_555 A HIS 141 A ND1 HIS 60 1_555 metalc 2.300 A ZN 1 B ZN ZN 1_555 A CYS 144 A SG CYS 63 1_555 metalc 2.296 A ZN 2 C ZN ZN 1_555 A CYS 147 A SG CYS 66 1_555 metalc 2.300 A ZN 2 C ZN ZN 1_555 A CYS 150 A SG CYS 69 1_555 metalc 2.298 A ZN 2 C ZN ZN 1_555 A CYS 168 A SG CYS 87 1_555 metalc 2.292 A ZN 2 C ZN ZN 1_555 A CYS 171 A SG CYS 90 1_555 SIGNALING PROTEIN LIM DOMAIN CONTAINING PROTEINS, METAL-BINDING PROTEIN, SIGNALING PROTEIN CSRP2_COTJA UNP 1 Q05158 82 194 1CXX 82 194 Q05158 A 1 1 113 1 ARG engineered mutation ALA 122 1CXX A Q05158 UNP 122 41 2 2 anti-parallel anti-parallel A VAL 133 A VAL 52 A ILE 134 A ILE 53 A PRO 139 A PRO 58 A TRP 140 A TRP 59 A GLU 161 A GLU 80 A LYS 162 A LYS 81 A GLU 165 A GLU 84 A ILE 166 A ILE 85 BINDING SITE FOR RESIDUE ZN A 1 A ZN 1 Software 4 BINDING SITE FOR RESIDUE ZN A 2 A ZN 2 Software 4 A CYS 120 A CYS 39 4 1_555 A CYS 123 A CYS 42 4 1_555 A HIS 141 A HIS 60 4 1_555 A CYS 144 A CYS 63 4 1_555 A CYS 147 A CYS 66 4 1_555 A CYS 150 A CYS 69 4 1_555 A CYS 168 A CYS 87 4 1_555 A CYS 171 A CYS 90 4 1_555 1 P 1