0.02155 0.01244 0.00000 0.00000 0.02488 0.00000 0.00000 0.00000 0.01091 0.00000 0.00000 0.00000 Kostanjevecki, V. Leys, D. Van Driessche, G. Meyer, T.E. Cusanovich, M.A. Fischer, U. Guisez, Y. Van Beeumen, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 46.406 46.406 91.660 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H32 Fe N4 O4 616.487 PROTOPORPHYRIN IX CONTAINING FE HEME non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 274 35614 35620 10.1074/jbc.274.50.35614 10585439 Structure and characterization of Ectothiorhodospira vacuolata cytochrome b(558), a prokaryotic homologue of cytochrome b(5). 1999 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 1999-05-15 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.97 1.0 DW32 LURE 0.97 SYNCHROTRON LURE BEAMLINE DW32 10106.286 CYTOCHROME B5 1 man polymer 616.487 PROTOPORPHYRIN IX CONTAINING FE 1 syn non-polymer 18.015 water 166 nat water no no NETEATLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQR YLIGTLEEIT NETEATLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQR YLIGTLEEIT A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Ectothiorhodospira Escherichia sample 1054 Ectothiorhodospira shaposhnikovii 562 Escherichia coli 1 2.82 56.34 VAPOR DIFFUSION, HANGING DROP 5.6 MES, NACL, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 repository Initial release Version format compliance Version format compliance 1 0 1999-09-10 1 1 2008-04-27 1 2 2011-07-13 RCSB Y RCSB 1999-08-31 REL REL HEM PROTOPORPHYRIN IX CONTAINING FE HOH water HEM 204 2 HEM HEM 204 A HOH 1 3 HOH HOH 205 A HOH 2 3 HOH HOH 206 A HOH 3 3 HOH HOH 207 A HOH 4 3 HOH HOH 208 A HOH 5 3 HOH HOH 209 A HOH 6 3 HOH HOH 210 A HOH 7 3 HOH HOH 211 A HOH 8 3 HOH HOH 212 A HOH 9 3 HOH HOH 213 A HOH 10 3 HOH HOH 214 A HOH 11 3 HOH HOH 215 A HOH 12 3 HOH HOH 216 A HOH 13 3 HOH HOH 217 A HOH 14 3 HOH HOH 218 A HOH 15 3 HOH HOH 219 A HOH 16 3 HOH HOH 220 A HOH 17 3 HOH HOH 221 A HOH 18 3 HOH HOH 222 A HOH 19 3 HOH HOH 223 A HOH 20 3 HOH HOH 224 A HOH 21 3 HOH HOH 225 A HOH 22 3 HOH HOH 226 A HOH 23 3 HOH HOH 227 A HOH 24 3 HOH HOH 228 A HOH 25 3 HOH HOH 229 A HOH 26 3 HOH HOH 230 A HOH 27 3 HOH HOH 231 A HOH 28 3 HOH HOH 232 A HOH 29 3 HOH HOH 233 A HOH 30 3 HOH HOH 234 A HOH 31 3 HOH HOH 235 A HOH 32 3 HOH HOH 236 A HOH 33 3 HOH HOH 237 A HOH 34 3 HOH HOH 238 A HOH 35 3 HOH HOH 239 A HOH 36 3 HOH HOH 240 A HOH 37 3 HOH HOH 241 A HOH 38 3 HOH HOH 242 A HOH 39 3 HOH HOH 243 A HOH 40 3 HOH HOH 244 A HOH 41 3 HOH HOH 245 A HOH 42 3 HOH HOH 246 A HOH 43 3 HOH HOH 247 A HOH 44 3 HOH HOH 248 A HOH 45 3 HOH HOH 249 A HOH 46 3 HOH HOH 250 A HOH 47 3 HOH HOH 251 A HOH 48 3 HOH HOH 252 A HOH 49 3 HOH HOH 253 A HOH 50 3 HOH HOH 254 A HOH 51 3 HOH HOH 255 A HOH 52 3 HOH HOH 256 A HOH 53 3 HOH HOH 257 A HOH 54 3 HOH HOH 258 A HOH 55 3 HOH HOH 259 A HOH 56 3 HOH HOH 260 A HOH 57 3 HOH HOH 261 A HOH 58 3 HOH HOH 262 A HOH 59 3 HOH HOH 263 A HOH 60 3 HOH HOH 264 A HOH 61 3 HOH HOH 265 A HOH 62 3 HOH HOH 266 A HOH 63 3 HOH HOH 267 A HOH 64 3 HOH HOH 268 A HOH 65 3 HOH HOH 269 A HOH 66 3 HOH HOH 270 A HOH 67 3 HOH HOH 271 A HOH 68 3 HOH HOH 272 A HOH 69 3 HOH HOH 273 A HOH 70 3 HOH HOH 274 A HOH 71 3 HOH HOH 275 A HOH 72 3 HOH HOH 276 A HOH 73 3 HOH HOH 277 A HOH 74 3 HOH HOH 278 A HOH 75 3 HOH HOH 279 A HOH 76 3 HOH HOH 280 A HOH 77 3 HOH HOH 281 A HOH 78 3 HOH HOH 282 A HOH 79 3 HOH HOH 283 A HOH 80 3 HOH HOH 284 A HOH 81 3 HOH HOH 285 A HOH 82 3 HOH HOH 286 A HOH 83 3 HOH HOH 287 A HOH 84 3 HOH HOH 288 A HOH 85 3 HOH HOH 289 A HOH 86 3 HOH HOH 290 A HOH 87 3 HOH HOH 291 A HOH 88 3 HOH HOH 292 A HOH 89 3 HOH HOH 293 A HOH 90 3 HOH HOH 294 A HOH 91 3 HOH HOH 295 A HOH 92 3 HOH HOH 296 A HOH 93 3 HOH HOH 297 A HOH 94 3 HOH HOH 298 A HOH 95 3 HOH HOH 299 A HOH 96 3 HOH HOH 300 A HOH 97 3 HOH HOH 301 A HOH 98 3 HOH HOH 302 A HOH 99 3 HOH HOH 303 A HOH 100 3 HOH HOH 304 A HOH 101 3 HOH HOH 305 A HOH 102 3 HOH HOH 306 A HOH 103 3 HOH HOH 307 A HOH 104 3 HOH HOH 308 A HOH 105 3 HOH HOH 309 A HOH 106 3 HOH HOH 310 A HOH 107 3 HOH HOH 311 A HOH 108 3 HOH HOH 312 A HOH 109 3 HOH HOH 313 A HOH 110 3 HOH HOH 314 A HOH 111 3 HOH HOH 315 A HOH 112 3 HOH HOH 316 A HOH 113 3 HOH HOH 317 A HOH 114 3 HOH HOH 318 A HOH 115 3 HOH HOH 319 A HOH 116 3 HOH HOH 320 A HOH 117 3 HOH HOH 321 A HOH 118 3 HOH HOH 322 A HOH 119 3 HOH HOH 323 A HOH 120 3 HOH HOH 324 A HOH 121 3 HOH HOH 325 A HOH 122 3 HOH HOH 326 A HOH 123 3 HOH HOH 327 A HOH 124 3 HOH HOH 328 A HOH 125 3 HOH HOH 329 A HOH 126 3 HOH HOH 330 A HOH 127 3 HOH HOH 331 A HOH 128 3 HOH HOH 332 A HOH 129 3 HOH HOH 333 A HOH 130 3 HOH HOH 334 A HOH 131 3 HOH HOH 335 A HOH 132 3 HOH HOH 336 A HOH 133 3 HOH HOH 337 A HOH 134 3 HOH HOH 338 A HOH 135 3 HOH HOH 339 A HOH 136 3 HOH HOH 340 A HOH 137 3 HOH HOH 341 A HOH 138 3 HOH HOH 342 A HOH 139 3 HOH HOH 343 A HOH 140 3 HOH HOH 344 A HOH 141 3 HOH HOH 345 A HOH 142 3 HOH HOH 346 A HOH 143 3 HOH HOH 347 A HOH 144 3 HOH HOH 348 A HOH 145 3 HOH HOH 349 A HOH 146 3 HOH HOH 350 A HOH 147 3 HOH HOH 351 A HOH 148 3 HOH HOH 352 A HOH 149 3 HOH HOH 353 A HOH 150 3 HOH HOH 354 A HOH 151 3 HOH HOH 355 A HOH 152 3 HOH HOH 356 A HOH 153 3 HOH HOH 357 A HOH 154 3 HOH HOH 358 A HOH 155 3 HOH HOH 359 A HOH 156 3 HOH HOH 360 A HOH 157 3 HOH HOH 361 A HOH 158 3 HOH HOH 362 A HOH 159 3 HOH HOH 363 A HOH 160 3 HOH HOH 364 A HOH 161 3 HOH HOH 365 A HOH 162 3 HOH HOH 366 A HOH 163 3 HOH HOH 367 A HOH 164 3 HOH HOH 368 A HOH 165 3 HOH HOH 369 A HOH 166 3 HOH HOH 370 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A THR 6 n 6 THR 6 A LEU 7 n 7 LEU 7 A PRO 8 n 8 PRO 8 A VAL 9 n 9 VAL 9 A PHE 10 n 10 PHE 10 A THR 11 n 11 THR 11 A LEU 12 n 12 LEU 12 A GLU 13 n 13 GLU 13 A GLN 14 n 14 GLN 14 A VAL 15 n 15 VAL 15 A ALA 16 n 16 ALA 16 A GLU 17 n 17 GLU 17 A HIS 18 n 18 HIS 18 A HIS 19 n 19 HIS 19 A SER 20 n 20 SER 20 A PRO 21 n 21 PRO 21 A ASP 22 n 22 ASP 22 A ASP 23 n 23 ASP 23 A CYS 24 n 24 CYS 24 A TRP 25 n 25 TRP 25 A MET 26 n 26 MET 26 A ALA 27 n 27 ALA 27 A ILE 28 n 28 ILE 28 A HIS 29 n 29 HIS 29 A GLY 30 n 30 GLY 30 A LYS 31 n 31 LYS 31 A VAL 32 n 32 VAL 32 A TYR 33 n 33 TYR 33 A ASP 34 n 34 ASP 34 A LEU 35 n 35 LEU 35 A THR 36 n 36 THR 36 A PRO 37 n 37 PRO 37 A TYR 38 n 38 TYR 38 A VAL 39 n 39 VAL 39 A PRO 40 n 40 PRO 40 A ASN 41 n 41 ASN 41 A HIS 42 n 42 HIS 42 A PRO 43 n 43 PRO 43 A GLY 44 n 44 GLY 44 A PRO 45 n 45 PRO 45 A ALA 46 n 46 ALA 46 A GLY 47 n 47 GLY 47 A MET 48 n 48 MET 48 A MET 49 n 49 MET 49 A LEU 50 n 50 LEU 50 A VAL 51 n 51 VAL 51 A TRP 52 n 52 TRP 52 A CYS 53 n 53 CYS 53 A GLY 54 n 54 GLY 54 A GLN 55 n 55 GLN 55 A GLU 56 n 56 GLU 56 A SER 57 n 57 SER 57 A THR 58 n 58 THR 58 A GLU 59 n 59 GLU 59 A ALA 60 n 60 ALA 60 A TRP 61 n 61 TRP 61 A GLU 62 n 62 GLU 62 A THR 63 n 63 THR 63 A LYS 64 n 64 LYS 64 A SER 65 n 65 SER 65 A TYR 66 n 66 TYR 66 A GLY 67 n 67 GLY 67 A GLU 68 n 68 GLU 68 A PRO 69 n 69 PRO 69 A HIS 70 n 70 HIS 70 A SER 71 n 71 SER 71 A SER 72 n 72 SER 72 A LEU 73 n 73 LEU 73 A ALA 74 n 74 ALA 74 A ALA 75 n 75 ALA 75 A ARG 76 n 76 ARG 76 A LEU 77 n 77 LEU 77 A LEU 78 n 78 LEU 78 A GLN 79 n 79 GLN 79 A ARG 80 n 80 ARG 80 A TYR 81 n 81 TYR 81 A LEU 82 n 82 LEU 82 A ILE 83 n 83 ILE 83 A GLY 84 n 84 GLY 84 A THR 85 n 85 THR 85 A LEU 86 n 86 LEU 86 A n 87 87 A n 88 88 A n 89 89 A n 90 90 A author_defined_assembly 1 monomeric A HIS 42 A NE2 HIS 42 1_555 A HEM 204 B FE HEM 1_555 A HEM 204 B NA HEM 1_555 88.2 A HIS 42 A NE2 HIS 42 1_555 A HEM 204 B FE HEM 1_555 A HEM 204 B NB HEM 1_555 88.0 A HEM 204 B NA HEM 1_555 A HEM 204 B FE HEM 1_555 A HEM 204 B NB HEM 1_555 89.7 A HIS 42 A NE2 HIS 42 1_555 A HEM 204 B FE HEM 1_555 A HEM 204 B NC HEM 1_555 89.7 A HEM 204 B NA HEM 1_555 A HEM 204 B FE HEM 1_555 A HEM 204 B NC HEM 1_555 177.8 A HEM 204 B NB HEM 1_555 A HEM 204 B FE HEM 1_555 A HEM 204 B NC HEM 1_555 90.8 A HIS 42 A NE2 HIS 42 1_555 A HEM 204 B FE HEM 1_555 A HEM 204 B ND HEM 1_555 88.9 A HEM 204 B NA HEM 1_555 A HEM 204 B FE HEM 1_555 A HEM 204 B ND HEM 1_555 89.7 A HEM 204 B NB HEM 1_555 A HEM 204 B FE HEM 1_555 A HEM 204 B ND HEM 1_555 176.8 A HEM 204 B NC HEM 1_555 A HEM 204 B FE HEM 1_555 A HEM 204 B ND HEM 1_555 89.6 A HIS 42 A NE2 HIS 42 1_555 A HEM 204 B FE HEM 1_555 A HIS 70 A NE2 HIS 70 1_555 174.6 A HEM 204 B NA HEM 1_555 A HEM 204 B FE HEM 1_555 A HIS 70 A NE2 HIS 70 1_555 94.7 A HEM 204 B NB HEM 1_555 A HEM 204 B FE HEM 1_555 A HIS 70 A NE2 HIS 70 1_555 87.6 A HEM 204 B NC HEM 1_555 A HEM 204 B FE HEM 1_555 A HIS 70 A NE2 HIS 70 1_555 87.4 A HEM 204 B ND HEM 1_555 A HEM 204 B FE HEM 1_555 A HIS 70 A NE2 HIS 70 1_555 95.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG GLU 68 A CG GLU 68 1 Y 1 A CD GLU 68 A CD GLU 68 1 Y 1 A OE1 GLU 68 A OE1 GLU 68 1 Y 1 A OE2 GLU 68 A OE2 GLU 68 1 Y 1 A CD ARG 80 A CD ARG 80 1 Y 1 A NE ARG 80 A NE ARG 80 1 Y 1 A CZ ARG 80 A CZ ARG 80 1 Y 1 A NH1 ARG 80 A NH1 ARG 80 1 Y 1 A NH2 ARG 80 A NH2 ARG 80 1 Y 1 A ASN 1 A ASN 1 1 Y 1 A GLU 2 A GLU 2 1 Y 1 A THR 3 A THR 3 1 Y 1 A GLU 4 A GLU 4 1 Y 1 A ALA 5 A ALA 5 1 Y 1 A GLU 87 A GLU 87 1 Y 1 A GLU 88 A GLU 88 1 Y 1 A ILE 89 A ILE 89 1 Y 1 A THR 90 A THR 90 1 Y 1 A HIS 18 -113.67 76.13 1 A ASP 23 -165.80 77.71 USE MAXIMUM LIKELIHOOD PROCEDURE 0.22 0.199 0.186 0.186 1.65 12.0 711 14226 14226 99.7 RANDOM 1 0.0 0.0 ENGH & HUBER 1.65 12.0 166 848 43 0 639 23.13 1.65 15.0 1CXY 92730 14370 1.0 1.0 0.045 1 19.9 6.45 99.6 0.318 1.6 1.66 2.4 99.7 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement REFMAC CYTOCHROME B5 STRUCTURE AND CHARACTERIZATION OF ECTOTHIORHODOSPIRA VACUOLATA CYTOCHROME B558, A PROKARYOTIC HOMOLOGUE OF CYTOCHROME B5 1 N N 2 N N 3 N N A THR 11 A THR 11 HELX_P A ALA 16 A ALA 16 1 1 6 A TYR 38 A TYR 38 HELX_P A HIS 42 A HIS 42 5 2 5 A MET 49 A MET 49 HELX_P A CYS 53 A CYS 53 5 3 5 A SER 57 A SER 57 HELX_P A LYS 64 A LYS 64 1 4 8 A SER 71 A SER 71 HELX_P A TYR 81 A TYR 81 1 5 11 disulf 2.038 A CYS 24 A SG CYS 24 1_555 A CYS 53 A SG CYS 53 1_555 metalc 2.038 A HEM 204 B FE HEM 1_555 A HIS 42 A NE2 HIS 42 1_555 metalc 2.095 A HEM 204 B FE HEM 1_555 A HIS 70 A NE2 HIS 70 1_555 ELECTRON TRANSPORT HELIX, BETA-STRAND, ELECTRON TRANSPORT CYB5_ECTVA UNP 1 P82291 1 90 1CXY 1 90 P82291 A 1 1 90 4 parallel A HIS 19 A HIS 19 A SER 20 A SER 20 A ASP 23 A ASP 23 A ILE 28 A ILE 28 A LYS 31 A LYS 31 A ASP 34 A ASP 34 A LEU 82 A LEU 82 A THR 85 A THR 85 BINDING SITE FOR RESIDUE HEM A 204 Software 15 A TYR 38 A TYR 38 15 1_555 A HIS 42 A HIS 42 15 1_555 A PRO 43 A PRO 43 15 1_555 A MET 48 A MET 48 15 1_555 A MET 49 A MET 49 15 1_555 A TRP 61 A TRP 61 15 1_555 A LYS 64 A LYS 64 15 1_555 A TYR 66 A TYR 66 15 1_555 A HIS 70 A HIS 70 15 1_555 A SER 71 A SER 71 15 1_555 A ALA 74 A ALA 74 15 1_555 A LEU 78 A LEU 78 15 1_555 A GLN 79 A GLN 79 15 5_565 A HOH 238 C HOH 15 1_555 A HOH 277 C HOH 15 1_555 154 P 32 2 1