1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Coles, M. Diercks, T. Liermann, J. Groeger, A. Rockel, B. Baumeister, W. Koretke, K. Lupas, A. Peters, J. Kessler, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Curr.Biol. CUBLE2 2060 0960-9822 9 1158 1168 10.1016/S0960-9822(00)80017-2 10531028 The solution structure of VAT-N reveals a 'missing link' in the evolution of complex enzymes from a simple betaalphabetabeta element. 1999 10.2210/pdb1cz4/pdb pdb_00001cz4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 20649.816 VCP-LIKE ATPASE N-TERMINAL DOMAIN: M1 TO E183 FOLLOWED BY A DIGLYCINE SPACER 1 man polymer no no MESNNGIILRVAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIEKVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGAS IGDKVKVRKVRTEIAKKVTLAPIIRKDQRLKFGEGIEEYVQRALIRRPMLEQDNISVPGLTLAGQTGLLFKVVKTLPSKV PVEIGEETKIEIREEPASEVLEEGG MESNNGIILRVAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIEKVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGAS IGDKVKVRKVRTEIAKKVTLAPIIRKDQRLKFGEGIEEYVQRALIRRPMLEQDNISVPGLTLAGQTGLLFKVVKTLPSKV PVEIGEETKIEIREEPASEVLEEGG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Thermoplasma Escherichia sample 2303 Thermoplasma acidophilum 562 Escherichia coli PLASMID PET28 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1999-10-12 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name ENSEMBLE OF 25 NMR STRUCTURES CHEMICAL SHIFTS, 3JHNHA COUPLING-CONSTANTS AND HET. NOE VALUES RCSB Y RCSB 1999-09-01 REL REL THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY. 3JHNHA COUPLING-CONSTANTS FROM AN HNHA SPECTRUM 1 3D_13C-SEPARATED_NOESY 3D_CNH-NOESY 3D_NCH-NOESY 3D_CCH-NOESY 3D_15N-SEPARATED_NOESY 3D_NNH-NOESY 80 mM 5.9 AMBIENT 320 K 80 mM 5.9 AMBIENT 320 K STRUCTURES BASED ON 1923 DISTANCE RESTRAINTS; 1817 NOE BASED RESTRAINTS, 196 DIHEDRAL ANGLE RESTRAINTS, 56 J-COUPLING RESTRAINTS, 106 DISTANCE RESTRAINTS FOR H-BONDS, 158 CA AND 148 CB CHEMICAL SHIFT RESTRAINTS. REFINED WITH A CONFORMATIONAL DATABASE POTENTIAL simulated annealing 1 1.4 MM VAT-NU-15N,13C; 40 MM PHOSPHATE BUFFER NA; 90% H2O, 10% D2O 1.2 MM VAT-N U-15N; 40 MM PHOSPHATE BUFFER NA; 90% H2O, 10% D2O BRUKER collection XwinNMR 2.5 BRUKER processing XwinNMR 2.5 BRUKER data analysis AURELIA 2.5.11 BRUNGER structure solution X-PLOR 3.851 BRUNGER refinement X-PLOR 3.851 750 Bruker DMX 600 Bruker DMX MET 1 n 1 MET 1 A GLU 2 n 2 GLU 2 A SER 3 n 3 SER 3 A ASN 4 n 4 ASN 4 A ASN 5 n 5 ASN 5 A GLY 6 n 6 GLY 6 A ILE 7 n 7 ILE 7 A ILE 8 n 8 ILE 8 A LEU 9 n 9 LEU 9 A ARG 10 n 10 ARG 10 A VAL 11 n 11 VAL 11 A ALA 12 n 12 ALA 12 A GLU 13 n 13 GLU 13 A ALA 14 n 14 ALA 14 A ASN 15 n 15 ASN 15 A SER 16 n 16 SER 16 A THR 17 n 17 THR 17 A ASP 18 n 18 ASP 18 A PRO 19 n 19 PRO 19 A GLY 20 n 20 GLY 20 A MET 21 n 21 MET 21 A SER 22 n 22 SER 22 A ARG 23 n 23 ARG 23 A VAL 24 n 24 VAL 24 A ARG 25 n 25 ARG 25 A LEU 26 n 26 LEU 26 A ASP 27 n 27 ASP 27 A GLU 28 n 28 GLU 28 A SER 29 n 29 SER 29 A SER 30 n 30 SER 30 A ARG 31 n 31 ARG 31 A ARG 32 n 32 ARG 32 A LEU 33 n 33 LEU 33 A LEU 34 n 34 LEU 34 A ASP 35 n 35 ASP 35 A ALA 36 n 36 ALA 36 A GLU 37 n 37 GLU 37 A ILE 38 n 38 ILE 38 A GLY 39 n 39 GLY 39 A ASP 40 n 40 ASP 40 A VAL 41 n 41 VAL 41 A VAL 42 n 42 VAL 42 A GLU 43 n 43 GLU 43 A ILE 44 n 44 ILE 44 A GLU 45 n 45 GLU 45 A LYS 46 n 46 LYS 46 A VAL 47 n 47 VAL 47 A ARG 48 n 48 ARG 48 A LYS 49 n 49 LYS 49 A THR 50 n 50 THR 50 A VAL 51 n 51 VAL 51 A GLY 52 n 52 GLY 52 A ARG 53 n 53 ARG 53 A VAL 54 n 54 VAL 54 A TYR 55 n 55 TYR 55 A ARG 56 n 56 ARG 56 A ALA 57 n 57 ALA 57 A ARG 58 n 58 ARG 58 A PRO 59 n 59 PRO 59 A GLU 60 n 60 GLU 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A ASN 63 n 63 ASN 63 A LYS 64 n 64 LYS 64 A GLY 65 n 65 GLY 65 A ILE 66 n 66 ILE 66 A VAL 67 n 67 VAL 67 A ARG 68 n 68 ARG 68 A ILE 69 n 69 ILE 69 A ASP 70 n 70 ASP 70 A SER 71 n 71 SER 71 A VAL 72 n 72 VAL 72 A MET 73 n 73 MET 73 A ARG 74 n 74 ARG 74 A ASN 75 n 75 ASN 75 A ASN 76 n 76 ASN 76 A CYS 77 n 77 CYS 77 A GLY 78 n 78 GLY 78 A ALA 79 n 79 ALA 79 A SER 80 n 80 SER 80 A ILE 81 n 81 ILE 81 A GLY 82 n 82 GLY 82 A ASP 83 n 83 ASP 83 A LYS 84 n 84 LYS 84 A VAL 85 n 85 VAL 85 A LYS 86 n 86 LYS 86 A VAL 87 n 87 VAL 87 A ARG 88 n 88 ARG 88 A LYS 89 n 89 LYS 89 A VAL 90 n 90 VAL 90 A ARG 91 n 91 ARG 91 A THR 92 n 92 THR 92 A GLU 93 n 93 GLU 93 A ILE 94 n 94 ILE 94 A ALA 95 n 95 ALA 95 A LYS 96 n 96 LYS 96 A LYS 97 n 97 LYS 97 A VAL 98 n 98 VAL 98 A THR 99 n 99 THR 99 A LEU 100 n 100 LEU 100 A ALA 101 n 101 ALA 101 A PRO 102 n 102 PRO 102 A ILE 103 n 103 ILE 103 A ILE 104 n 104 ILE 104 A ARG 105 n 105 ARG 105 A LYS 106 n 106 LYS 106 A ASP 107 n 107 ASP 107 A GLN 108 n 108 GLN 108 A ARG 109 n 109 ARG 109 A LEU 110 n 110 LEU 110 A LYS 111 n 111 LYS 111 A PHE 112 n 112 PHE 112 A GLY 113 n 113 GLY 113 A GLU 114 n 114 GLU 114 A GLY 115 n 115 GLY 115 A ILE 116 n 116 ILE 116 A GLU 117 n 117 GLU 117 A GLU 118 n 118 GLU 118 A TYR 119 n 119 TYR 119 A VAL 120 n 120 VAL 120 A GLN 121 n 121 GLN 121 A ARG 122 n 122 ARG 122 A ALA 123 n 123 ALA 123 A LEU 124 n 124 LEU 124 A ILE 125 n 125 ILE 125 A ARG 126 n 126 ARG 126 A ARG 127 n 127 ARG 127 A PRO 128 n 128 PRO 128 A MET 129 n 129 MET 129 A LEU 130 n 130 LEU 130 A GLU 131 n 131 GLU 131 A GLN 132 n 132 GLN 132 A ASP 133 n 133 ASP 133 A ASN 134 n 134 ASN 134 A ILE 135 n 135 ILE 135 A SER 136 n 136 SER 136 A VAL 137 n 137 VAL 137 A PRO 138 n 138 PRO 138 A GLY 139 n 139 GLY 139 A LEU 140 n 140 LEU 140 A THR 141 n 141 THR 141 A LEU 142 n 142 LEU 142 A ALA 143 n 143 ALA 143 A GLY 144 n 144 GLY 144 A GLN 145 n 145 GLN 145 A THR 146 n 146 THR 146 A GLY 147 n 147 GLY 147 A LEU 148 n 148 LEU 148 A LEU 149 n 149 LEU 149 A PHE 150 n 150 PHE 150 A LYS 151 n 151 LYS 151 A VAL 152 n 152 VAL 152 A VAL 153 n 153 VAL 153 A LYS 154 n 154 LYS 154 A THR 155 n 155 THR 155 A LEU 156 n 156 LEU 156 A PRO 157 n 157 PRO 157 A SER 158 n 158 SER 158 A LYS 159 n 159 LYS 159 A VAL 160 n 160 VAL 160 A PRO 161 n 161 PRO 161 A VAL 162 n 162 VAL 162 A GLU 163 n 163 GLU 163 A ILE 164 n 164 ILE 164 A GLY 165 n 165 GLY 165 A GLU 166 n 166 GLU 166 A GLU 167 n 167 GLU 167 A THR 168 n 168 THR 168 A LYS 169 n 169 LYS 169 A ILE 170 n 170 ILE 170 A GLU 171 n 171 GLU 171 A ILE 172 n 172 ILE 172 A ARG 173 n 173 ARG 173 A GLU 174 n 174 GLU 174 A GLU 175 n 175 GLU 175 A PRO 176 n 176 PRO 176 A ALA 177 n 177 ALA 177 A SER 178 n 178 SER 178 A GLU 179 n 179 GLU 179 A VAL 180 n 180 VAL 180 A LEU 181 n 181 LEU 181 A GLU 182 n 182 GLU 182 A GLU 183 n 183 GLU 183 A GLY 184 n 184 GLY 184 A GLY 185 n 185 GLY 185 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 12 A N ALA 12 A O VAL 67 A O VAL 67 A N VAL 67 A N VAL 67 A O ARG 10 A O ARG 10 A N LEU 9 A N LEU 9 A O VAL 85 A O VAL 85 A N VAL 90 A N VAL 90 A O VAL 41 A O VAL 41 A O ILE 44 A O ILE 44 A N THR 50 A N THR 50 A N TYR 55 A N TYR 55 A O VAL 24 A O VAL 24 A N ILE 135 A N ILE 135 A O PHE 150 A O PHE 150 A O LYS 154 A O LYS 154 A N THR 99 A N THR 99 A N VAL 98 A N VAL 98 A O LYS 169 A O LYS 169 A N MET 129 A N MET 129 A O VAL 162 A O VAL 162 1 A A H OD2 SER ASP 80 83 1.46 1 A A O H LYS LYS 96 169 1.47 1 A A OD1 H ASP SER 27 30 1.49 1 A A H OD2 GLU ASP 37 40 1.54 1 A A O H GLU GLU 93 163 1.60 1 A GLU 13 -176.43 148.45 1 A ASP 18 36.43 59.97 1 A LEU 34 -105.23 -74.05 1 A ASP 35 -170.17 -24.56 1 A ALA 36 -24.57 119.19 1 A LYS 46 -98.39 -67.35 1 A GLU 60 -73.53 34.38 1 A ASP 61 -146.25 -27.57 1 A ASN 63 -81.79 43.60 1 A ASP 83 -57.29 -167.57 1 A ARG 105 -140.62 -135.54 1 A LEU 110 -99.25 52.26 1 A PHE 112 -142.77 -40.06 1 A GLU 114 41.48 94.45 1 A ILE 125 -47.31 166.65 1 A ARG 126 33.07 46.68 1 A GLN 132 73.84 -0.48 1 A ASP 133 -69.97 -176.22 1 A PRO 138 -46.53 177.87 1 A THR 141 176.97 -167.50 1 A LEU 142 -146.06 -122.84 1 A ALA 143 -52.81 -161.19 1 A PRO 157 -53.07 -174.09 1 A SER 158 -86.83 41.50 1 A PRO 176 -71.88 -156.43 NMR STRUCTURE OF VAT-N: THE N-TERMINAL DOMAIN OF VAT (VCP-LIKE ATPASE OF THERMOPLASMA) 1 N N A ASP 27 A ASP 27 HELX_P A LEU 33 A LEU 33 1 1 7 A ASP 70 A ASP 70 HELX_P A GLY 78 A GLY 78 1 2 9 A GLY 115 A GLY 115 HELX_P A ILE 125 A ILE 125 1 3 11 HYDROLASE DOUBLE-PSI BETA-BARREL, BETA-CLAM, SUBSTRATE RECOGNITION DOMAIN, HYDROLASE VAT_THEAC UNP 1 O05209 1 183 1CZ4 1 183 O05209 A 1 1 183 1 VAL SEE REMARK 999 GLY 184 1CZ4 A O05209 UNP 184 184 1 SER SEE REMARK 999 GLY 185 1CZ4 A O05209 UNP 185 185 7 4 2 parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel A GLY 6 A GLY 6 A ALA 12 A ALA 12 A ILE 66 A ILE 66 A ARG 68 A ARG 68 A GLY 6 A GLY 6 A ALA 12 A ALA 12 A LYS 84 A LYS 84 A VAL 90 A VAL 90 A VAL 41 A VAL 41 A GLU 45 A GLU 45 A LYS 49 A LYS 49 A ARG 56 A ARG 56 A ARG 23 A ARG 23 A LEU 26 A LEU 26 A ASN 134 A ASN 134 A ILE 135 A ILE 135 A LEU 149 A LEU 149 A THR 155 A THR 155 A LYS 97 A LYS 97 A ILE 103 A ILE 103 A LYS 169 A LYS 169 A ILE 172 A ILE 172 A PRO 128 A PRO 128 A MET 129 A MET 129 A VAL 162 A VAL 162 A GLU 163 A GLU 163 1 P 1