0.015298
0.000000
0.000000
0.000000
0.015298
0.000000
0.000000
0.000000
0.012478
0.000000
0.000000
0.000000
Lubkowski, J.
Dauter, Z.
Yang, F.
Alexandratos, J.
Merkel, G.
Skalka, A.M.
Wlodawer, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
65.370
65.370
80.140
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C8 H18 N2 O4 S
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
N
C
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
S
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
O
N
129
N
N
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
Y
175
N
C
Y
176
N
N
Y
177
N
C
Y
178
N
C
Y
179
N
N
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
S
C
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
N
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
S
N
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
O
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
R
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
N
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
N
392
N
O
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
N
410
N
C
N
411
N
C
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
doub
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
Y
281
N
doub
Y
282
N
sing
Y
283
N
sing
N
284
N
sing
Y
285
N
doub
N
286
N
sing
Y
287
N
doub
N
288
N
sing
Y
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
Y
378
N
doub
Y
379
N
sing
Y
380
N
sing
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
38
13512
13522
10.1021/bi991362q
10521258
Atomic resolution structures of the core domain of avian sarcoma virus integrase and its D64N mutant.
1999
10.2210/pdb1czb/pdb
pdb_00001czb
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
95.0
1
IMAGE PLATE
1998-03-21
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
X9B
NSLS
0.98
SYNCHROTRON
NSLS BEAMLINE X9B
17855.441
AVIAN SARCOMA VIRUS INTEGRASE
CATALYTIC CORE DOMAIN
INS(P48, L49, R50, E51, N208, L209)
1
man
polymer
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
1
syn
non-polymer
18.015
water
137
nat
water
no
no
PLREGRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFT
SKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKT
NL
PLREGRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFT
SKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKT
NL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Alpharetrovirus
Escherichia
sample
11876
Avian sarcoma virus
562
Escherichia coli
PRC23IN(52-207)
1
2.40
48.67
VAPOR DIFFUSION, HANGING DROP
7.5
20% PEG 4000, 10% ISOPROPANOL, 100 mM HEPES pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
software
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
1999-09-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
same protein at lower resolution
RCSB
Y
RCSB
1999-09-01
REL
REL
EPE
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HOH
water
THE APPARENT DISCREPANCY BETWEEN THE SEQUENCE PRESENTED
HERE AND THE "POL_RSVP" SEQUENCE IS A RESULT OF VIRAL
STRAIN VARIATION. THE STRAIN USED FOR THIS WORK, "ROUS
SARCOMA VIRUS SCHMIDT-RUPPIN B", COMPARED TO "POL-RSVP"
SEQUENCE DIFFERS AT TWO POSITIONS WITH THE CONSERVATIVE
AMINO ACID RESIDUE DIFFERENCES NOTED (VAL->ALA 101 &
ARG->LYS 166).
EPE
300
2
EPE
EPE
300
A
HOH
401
3
HOH
HOH
401
A
HOH
402
3
HOH
HOH
402
A
HOH
403
3
HOH
HOH
403
A
HOH
404
3
HOH
HOH
404
A
HOH
405
3
HOH
HOH
405
A
HOH
406
3
HOH
HOH
406
A
HOH
407
3
HOH
HOH
407
A
HOH
408
3
HOH
HOH
408
A
HOH
409
3
HOH
HOH
409
A
HOH
410
3
HOH
HOH
410
A
HOH
411
3
HOH
HOH
411
A
HOH
412
3
HOH
HOH
412
A
HOH
413
3
HOH
HOH
413
A
HOH
414
3
HOH
HOH
414
A
HOH
415
3
HOH
HOH
415
A
HOH
416
3
HOH
HOH
416
A
HOH
417
3
HOH
HOH
417
A
HOH
418
3
HOH
HOH
418
A
HOH
419
3
HOH
HOH
419
A
HOH
420
3
HOH
HOH
420
A
HOH
421
3
HOH
HOH
421
A
HOH
422
3
HOH
HOH
422
A
HOH
423
3
HOH
HOH
423
A
HOH
424
3
HOH
HOH
424
A
HOH
425
3
HOH
HOH
425
A
HOH
426
3
HOH
HOH
426
A
HOH
427
3
HOH
HOH
427
A
HOH
428
3
HOH
HOH
428
A
HOH
429
3
HOH
HOH
429
A
HOH
430
3
HOH
HOH
430
A
HOH
431
3
HOH
HOH
431
A
HOH
432
3
HOH
HOH
432
A
HOH
433
3
HOH
HOH
433
A
HOH
434
3
HOH
HOH
434
A
HOH
435
3
HOH
HOH
435
A
HOH
436
3
HOH
HOH
436
A
HOH
437
3
HOH
HOH
437
A
HOH
438
3
HOH
HOH
438
A
HOH
439
3
HOH
HOH
439
A
HOH
440
3
HOH
HOH
440
A
HOH
441
3
HOH
HOH
441
A
HOH
442
3
HOH
HOH
442
A
HOH
443
3
HOH
HOH
443
A
HOH
444
3
HOH
HOH
444
A
HOH
445
3
HOH
HOH
445
A
HOH
446
3
HOH
HOH
446
A
HOH
447
3
HOH
HOH
447
A
HOH
448
3
HOH
HOH
448
A
HOH
449
3
HOH
HOH
449
A
HOH
450
3
HOH
HOH
450
A
HOH
451
3
HOH
HOH
451
A
HOH
452
3
HOH
HOH
452
A
HOH
453
3
HOH
HOH
453
A
HOH
454
3
HOH
HOH
454
A
HOH
455
3
HOH
HOH
455
A
HOH
456
3
HOH
HOH
456
A
HOH
457
3
HOH
HOH
457
A
HOH
458
3
HOH
HOH
458
A
HOH
459
3
HOH
HOH
459
A
HOH
460
3
HOH
HOH
460
A
HOH
461
3
HOH
HOH
461
A
HOH
462
3
HOH
HOH
462
A
HOH
463
3
HOH
HOH
463
A
HOH
464
3
HOH
HOH
464
A
HOH
465
3
HOH
HOH
465
A
HOH
466
3
HOH
HOH
466
A
HOH
467
3
HOH
HOH
467
A
HOH
468
3
HOH
HOH
468
A
HOH
469
3
HOH
HOH
469
A
HOH
470
3
HOH
HOH
470
A
HOH
471
3
HOH
HOH
471
A
HOH
472
3
HOH
HOH
472
A
HOH
473
3
HOH
HOH
473
A
HOH
474
3
HOH
HOH
474
A
HOH
475
3
HOH
HOH
475
A
HOH
476
3
HOH
HOH
476
A
HOH
477
3
HOH
HOH
477
A
HOH
478
3
HOH
HOH
478
A
HOH
479
3
HOH
HOH
479
A
HOH
480
3
HOH
HOH
480
A
HOH
481
3
HOH
HOH
481
A
HOH
482
3
HOH
HOH
482
A
HOH
484
3
HOH
HOH
484
A
HOH
485
3
HOH
HOH
485
A
HOH
486
3
HOH
HOH
486
A
HOH
487
3
HOH
HOH
487
A
HOH
488
3
HOH
HOH
488
A
HOH
491
3
HOH
HOH
491
A
HOH
492
3
HOH
HOH
492
A
HOH
494
3
HOH
HOH
494
A
HOH
495
3
HOH
HOH
495
A
HOH
496
3
HOH
HOH
496
A
HOH
497
3
HOH
HOH
497
A
HOH
498
3
HOH
HOH
498
A
HOH
500
3
HOH
HOH
500
A
HOH
502
3
HOH
HOH
502
A
HOH
503
3
HOH
HOH
503
A
HOH
507
3
HOH
HOH
507
A
HOH
509
3
HOH
HOH
509
A
HOH
511
3
HOH
HOH
511
A
HOH
512
3
HOH
HOH
512
A
HOH
513
3
HOH
HOH
513
A
HOH
514
3
HOH
HOH
514
A
HOH
515
3
HOH
HOH
515
A
HOH
516
3
HOH
HOH
516
A
HOH
517
3
HOH
HOH
517
A
HOH
518
3
HOH
HOH
518
A
HOH
519
3
HOH
HOH
519
A
HOH
521
3
HOH
HOH
521
A
HOH
522
3
HOH
HOH
522
A
HOH
525
3
HOH
HOH
525
A
HOH
526
3
HOH
HOH
526
A
HOH
527
3
HOH
HOH
527
A
HOH
529
3
HOH
HOH
529
A
HOH
535
3
HOH
HOH
535
A
HOH
536
3
HOH
HOH
536
A
HOH
540
3
HOH
HOH
540
A
HOH
545
3
HOH
HOH
545
A
HOH
601
3
HOH
HOH
601
A
HOH
602
3
HOH
HOH
602
A
HOH
603
3
HOH
HOH
603
A
HOH
604
3
HOH
HOH
604
A
HOH
605
3
HOH
HOH
605
A
HOH
606
3
HOH
HOH
606
A
HOH
607
3
HOH
HOH
607
A
HOH
608
3
HOH
HOH
608
A
HOH
609
3
HOH
HOH
609
A
HOH
610
3
HOH
HOH
610
A
HOH
611
3
HOH
HOH
611
A
HOH
612
3
HOH
HOH
612
A
HOH
613
3
HOH
HOH
613
A
HOH
614
3
HOH
HOH
614
A
HOH
615
3
HOH
HOH
615
A
HOH
616
3
HOH
HOH
616
A
HOH
617
3
HOH
HOH
617
A
HOH
618
3
HOH
HOH
618
A
HOH
619
3
HOH
HOH
619
A
n
1
48
A
n
2
49
A
n
3
50
A
n
4
51
A
GLY
52
n
5
GLY
52
A
ARG
53
n
6
ARG
53
A
GLY
54
n
7
GLY
54
A
LEU
55
n
8
LEU
55
A
GLY
56
n
9
GLY
56
A
PRO
57
n
10
PRO
57
A
LEU
58
n
11
LEU
58
A
GLN
59
n
12
GLN
59
A
ILE
60
n
13
ILE
60
A
TRP
61
n
14
TRP
61
A
GLN
62
n
15
GLN
62
A
THR
63
n
16
THR
63
A
ASP
64
n
17
ASP
64
A
PHE
65
n
18
PHE
65
A
THR
66
n
19
THR
66
A
LEU
67
n
20
LEU
67
A
GLU
68
n
21
GLU
68
A
PRO
69
n
22
PRO
69
A
ARG
70
n
23
ARG
70
A
MET
71
n
24
MET
71
A
ALA
72
n
25
ALA
72
A
PRO
73
n
26
PRO
73
A
ARG
74
n
27
ARG
74
A
SER
75
n
28
SER
75
A
TRP
76
n
29
TRP
76
A
LEU
77
n
30
LEU
77
A
ALA
78
n
31
ALA
78
A
VAL
79
n
32
VAL
79
A
THR
80
n
33
THR
80
A
VAL
81
n
34
VAL
81
A
ASP
82
n
35
ASP
82
A
THR
83
n
36
THR
83
A
ALA
84
n
37
ALA
84
A
SER
85
n
38
SER
85
A
SER
86
n
39
SER
86
A
ALA
87
n
40
ALA
87
A
ILE
88
n
41
ILE
88
A
VAL
89
n
42
VAL
89
A
VAL
90
n
43
VAL
90
A
THR
91
n
44
THR
91
A
GLN
92
n
45
GLN
92
A
HIS
93
n
46
HIS
93
A
GLY
94
n
47
GLY
94
A
ARG
95
n
48
ARG
95
A
VAL
96
n
49
VAL
96
A
THR
97
n
50
THR
97
A
SER
98
n
51
SER
98
A
VAL
99
n
52
VAL
99
A
ALA
100
n
53
ALA
100
A
ALA
101
n
54
ALA
101
A
GLN
102
n
55
GLN
102
A
HIS
103
n
56
HIS
103
A
HIS
104
n
57
HIS
104
A
TRP
105
n
58
TRP
105
A
ALA
106
n
59
ALA
106
A
THR
107
n
60
THR
107
A
ALA
108
n
61
ALA
108
A
ILE
109
n
62
ILE
109
A
ALA
110
n
63
ALA
110
A
VAL
111
n
64
VAL
111
A
LEU
112
n
65
LEU
112
A
GLY
113
n
66
GLY
113
A
ARG
114
n
67
ARG
114
A
PRO
115
n
68
PRO
115
A
LYS
116
n
69
LYS
116
A
ALA
117
n
70
ALA
117
A
ILE
118
n
71
ILE
118
A
LYS
119
n
72
LYS
119
A
THR
120
n
73
THR
120
A
ASP
121
n
74
ASP
121
A
ASN
122
n
75
ASN
122
A
GLY
123
n
76
GLY
123
A
SER
124
n
77
SER
124
A
CYS
125
n
78
CYS
125
A
PHE
126
n
79
PHE
126
A
THR
127
n
80
THR
127
A
SER
128
n
81
SER
128
A
LYS
129
n
82
LYS
129
A
SER
130
n
83
SER
130
A
THR
131
n
84
THR
131
A
ARG
132
n
85
ARG
132
A
GLU
133
n
86
GLU
133
A
TRP
134
n
87
TRP
134
A
LEU
135
n
88
LEU
135
A
ALA
136
n
89
ALA
136
A
ARG
137
n
90
ARG
137
A
TRP
138
n
91
TRP
138
A
GLY
139
n
92
GLY
139
A
ILE
140
n
93
ILE
140
A
ALA
141
n
94
ALA
141
A
HIS
142
n
95
HIS
142
A
THR
143
n
96
THR
143
A
THR
144
n
97
THR
144
A
GLY
145
n
98
GLY
145
A
n
99
146
A
n
100
147
A
n
101
148
A
n
102
149
A
n
103
150
A
n
104
151
A
GLY
152
n
105
GLY
152
A
GLN
153
n
106
GLN
153
A
ALA
154
n
107
ALA
154
A
MET
155
n
108
MET
155
A
VAL
156
n
109
VAL
156
A
GLU
157
n
110
GLU
157
A
ARG
158
n
111
ARG
158
A
ALA
159
n
112
ALA
159
A
ASN
160
n
113
ASN
160
A
ARG
161
n
114
ARG
161
A
LEU
162
n
115
LEU
162
A
LEU
163
n
116
LEU
163
A
LYS
164
n
117
LYS
164
A
ASP
165
n
118
ASP
165
A
LYS
166
n
119
LYS
166
A
ILE
167
n
120
ILE
167
A
ARG
168
n
121
ARG
168
A
VAL
169
n
122
VAL
169
A
LEU
170
n
123
LEU
170
A
ALA
171
n
124
ALA
171
A
GLU
172
n
125
GLU
172
A
GLY
173
n
126
GLY
173
A
ASP
174
n
127
ASP
174
A
GLY
175
n
128
GLY
175
A
PHE
176
n
129
PHE
176
A
MET
177
n
130
MET
177
A
LYS
178
n
131
LYS
178
A
ARG
179
n
132
ARG
179
A
ILE
180
n
133
ILE
180
A
PRO
181
n
134
PRO
181
A
THR
182
n
135
THR
182
A
SER
183
n
136
SER
183
A
LYS
184
n
137
LYS
184
A
GLN
185
n
138
GLN
185
A
GLY
186
n
139
GLY
186
A
GLU
187
n
140
GLU
187
A
LEU
188
n
141
LEU
188
A
LEU
189
n
142
LEU
189
A
ALA
190
n
143
ALA
190
A
LYS
191
n
144
LYS
191
A
ALA
192
n
145
ALA
192
A
MET
193
n
146
MET
193
A
TYR
194
n
147
TYR
194
A
ALA
195
n
148
ALA
195
A
LEU
196
n
149
LEU
196
A
ASN
197
n
150
ASN
197
A
HIS
198
n
151
HIS
198
A
n
152
199
A
n
153
200
A
n
154
201
A
n
155
202
A
n
156
203
A
n
157
204
A
n
158
205
A
n
159
206
A
n
160
207
A
n
161
208
A
n
162
209
A
0.1320000
0.1430000
6355
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
80.1400000000
A
O
HIS
93
A
O
HIS
46
A
N
TRP
76
A
N
TRP
29
A
N
VAL
81
A
N
VAL
34
A
O
GLN
62
A
O
GLN
15
A
N
TRP
61
A
N
TRP
14
A
O
ALA
117
A
O
ALA
70
A
N
ILE
118
A
N
ILE
71
A
O
ALA
141
A
O
ALA
94
1
A
PRO
48
A
PRO
1
1
Y
1
A
LEU
49
A
LEU
2
1
Y
1
A
ARG
50
A
ARG
3
1
Y
1
A
GLU
51
A
GLU
4
1
Y
1
A
ILE
146
A
ILE
99
1
Y
1
A
PRO
147
A
PRO
100
1
Y
1
A
GLY
148
A
GLY
101
1
Y
1
A
ASN
149
A
ASN
102
1
Y
1
A
SER
150
A
SER
103
1
Y
1
A
GLN
151
A
GLN
104
1
Y
1
A
PHE
199
A
PHE
152
1
Y
1
A
GLU
200
A
GLU
153
1
Y
1
A
ARG
201
A
ARG
154
1
Y
1
A
GLY
202
A
GLY
155
1
Y
1
A
GLU
203
A
GLU
156
1
Y
1
A
ASN
204
A
ASN
157
1
Y
1
A
THR
205
A
THR
158
1
Y
1
A
LYS
206
A
LYS
159
1
Y
1
A
THR
207
A
THR
160
1
Y
1
A
ASN
208
A
ASN
161
1
Y
1
A
LEU
209
A
LEU
162
1
Y
1
A
GLN
92
0.098
SIDE CHAIN
1
-6.53
0.50
120.30
113.77
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
53
53
53
N
1
3.27
0.50
120.30
123.57
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
53
53
53
N
1
-5.05
0.50
120.30
115.25
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
70
70
70
B
B
B
N
1
3.55
0.50
120.30
123.85
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
74
74
74
N
1
-17.14
2.00
110.40
93.26
A
A
A
CB
CA
C
GLN
GLN
GLN
92
92
92
B
B
N
1
19.54
1.40
123.60
143.14
A
A
A
CD
NE
CZ
ARG
ARG
ARG
114
114
114
N
1
-20.58
1.50
110.50
89.92
A
A
A
N
CA
CB
SER
SER
SER
124
124
124
B
B
N
1
-13.66
2.00
110.40
96.74
A
A
A
CB
CA
C
CYS
CYS
CYS
125
125
125
B
N
1
13.31
1.50
110.80
124.11
A
A
A
N
CA
CB
CYS
CYS
CYS
125
125
125
B
N
1
-14.33
1.80
114.00
99.67
A
A
A
CA
CB
SG
CYS
CYS
CYS
125
125
125
B
B
N
1
4.27
0.50
120.30
124.57
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
168
168
168
N
1
-3.25
0.50
120.30
117.05
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
179
179
179
N
1
A
GLN
153
-144.06
52.38
1
A
LYS
178
-130.13
-125.33
0.1639000
0.1433000
0.1430000
0.1430000
1.06
10.00
1157
1490
74543
74543
1443
94.4
random
1
0.0
AB INITIO
ENGH AND HUBER
1
1001.
1189.
1.06
10.00
137
1283
15
0
1131
0.016
0.031
0.024
0.347
0.083
0.098
0.006
0.046
0.068
15.2
1.06
15.0
1CZB
69419
69419
-3
0.0340000
1
32.3
3.6
90.01
1.06
1.08
2467
4.2
86.7
model building
X-PLOR
refinement
SHELXL
data collection
MAR345
data scaling
SCALEPACK
phasing
X-PLOR
ATOMIC RESOLUTION ASV INTEGRASE CORE DOMAIN FROM HEPES
1
N
N
2
N
N
3
N
N
The biological assembly is (at least) a dimer constructed from chain A and a
symmetry partner generated by the two-fold symmetry operator.
A
PRO
69
A
PRO
22
HELX_P
A
ALA
72
A
ALA
25
5
1
4
A
THR
97
A
THR
50
HELX_P
A
GLY
113
A
GLY
66
1
2
17
A
GLY
123
A
GLY
76
HELX_P
A
SER
128
A
SER
81
1
3
6
A
SER
128
A
SER
81
HELX_P
A
GLY
139
A
GLY
92
1
4
12
A
GLN
153
A
GLN
106
HELX_P
A
ASP
174
A
ASP
127
1
5
22
A
PRO
181
A
PRO
134
HELX_P
A
SER
183
A
SER
136
5
6
3
A
LYS
184
A
LYS
137
HELX_P
A
HIS
198
A
HIS
151
1
7
15
TRANSFERASE
MIXED BETA-SHEET SURROUNDED BY ALPHA-HELICES, TRANSFERASE
A
ALA
72
A
ALA
25
1
A
PRO
73
A
PRO
26
5.79
POL_RSVP
UNP
1
P03354
624
779
1CZB
52
207
P03354
A
1
5
160
1
insertion
PRO
48
1CZB
A
P03354
UNP
1
1
insertion
LEU
49
1CZB
A
P03354
UNP
2
1
insertion
ARG
50
1CZB
A
P03354
UNP
3
1
insertion
GLU
51
1CZB
A
P03354
UNP
4
1
PRO
conflict
GLY
52
1CZB
A
P03354
UNP
624
5
1
VAL
SEE REMARK 999
ALA
101
1CZB
A
P03354
UNP
673
54
1
ARG
SEE REMARK 999
LYS
166
1CZB
A
P03354
UNP
738
119
1
insertion
ASN
208
1CZB
A
P03354
UNP
161
1
insertion
LEU
209
1CZB
A
P03354
UNP
162
5
anti-parallel
anti-parallel
parallel
parallel
A
ILE
88
A
ILE
41
A
HIS
93
A
HIS
46
A
TRP
76
A
TRP
29
A
ASP
82
A
ASP
35
A
ILE
60
A
ILE
13
A
LEU
67
A
LEU
20
A
ALA
117
A
ALA
70
A
LYS
119
A
LYS
72
A
ALA
141
A
ALA
94
A
THR
143
A
THR
96
BINDING SITE FOR RESIDUE EPE A 300
A
EPE
300
Software
16
A
PRO
73
A
PRO
26
16
1_555
A
SER
75
A
SER
28
16
1_555
A
TRP
76
A
TRP
29
16
1_555
A
GLY
94
A
GLY
47
16
1_555
A
ARG
95
A
ARG
48
16
1_555
A
VAL
96
A
VAL
49
16
1_555
A
ARG
137
A
ARG
90
16
6_566
A
TRP
138
A
TRP
91
16
6_566
A
LYS
166
A
LYS
119
16
4_565
A
LYS
191
A
LYS
144
16
4_565
A
ALA
195
A
ALA
148
16
4_565
A
HOH
484
C
HOH
16
1_555
A
HOH
511
C
HOH
16
1_555
A
HOH
512
C
HOH
16
1_555
A
HOH
602
C
HOH
16
4_565
A
HOH
604
C
HOH
16
1_555
96
P 43 21 2