17.54
9.520
20.252
22.862
A
O5'
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1
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A
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1
1
1.00
1
O
15.97
9.802
21.131
23.940
A
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1
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A
C5'
DC
1
1
1.00
1
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15.67
11.222
21.217
24.215
A
C4'
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1
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A
C4'
DC
1
1
1.00
1
C
15.06
11.473
20.006
24.993
A
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1
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A
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1
1
1.00
1
O
15.99
12.223
21.079
22.993
A
C3'
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1
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A
C3'
DC
1
1
1.00
1
C
17.21
13.315
21.789
23.344
A
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1
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A
O3'
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1
1
1.00
1
O
15.07
12.409
19.530
22.903
A
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1
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A
C2'
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1
1
1.00
1
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12.62
12.488
19.159
24.480
A
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1
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A
C1'
DC
1
1
1.00
1
C
10.58
12.025
17.728
24.613
A
N1
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1
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A
N1
DC
1
1
1.00
1
N
10.35
13.001
16.790
24.778
A
C2
DC
1
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A
C2
DC
1
1
1.00
1
C
10.86
14.201
17.090
24.866
A
O2
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1
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A
O2
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1
1
1.00
1
O
9.82
12.586
15.483
24.846
A
N3
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1
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A
N3
DC
1
1
1.00
1
N
9.44
11.261
15.032
24.843
A
C4
DC
1
ATOM
A
C4
DC
1
1
1.00
1
C
7.95
10.945
13.764
24.908
A
N4
DC
1
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A
N4
DC
1
1
1.00
1
N
10.40
10.298
16.078
24.628
A
C5
DC
1
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A
C5
DC
1
1
1.00
1
C
9.90
10.713
17.327
24.517
A
C6
DC
1
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A
C6
DC
1
1
1.00
1
C
19.49
13.868
22.938
22.322
A
P
DG
2
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A
P
DG
1
2
1.00
1
P
20.48
14.887
23.642
23.123
A
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2
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A
OP1
DG
1
2
1.00
1
O
19.42
12.717
23.398
21.674
A
OP2
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2
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A
OP2
DG
1
2
1.00
1
O
16.74
14.530
21.995
21.115
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2
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A
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1
2
1.00
1
O
14.84
15.791
21.446
21.457
A
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2
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A
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1
2
1.00
1
C
15.04
16.116
20.540
20.237
A
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2
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A
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1
2
1.00
1
C
14.05
15.218
19.504
20.173
A
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2
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A
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1
2
1.00
1
O
15.10
15.946
21.282
18.845
A
C3'
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2
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A
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DG
1
2
1.00
1
C
18.91
17.057
20.812
18.142
A
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2
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A
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1
2
1.00
1
O
14.39
14.648
20.776
18.330
A
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2
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A
C2'
DG
1
2
1.00
1
C
12.04
14.825
19.219
18.798
A
C1'
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2
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A
C1'
DG
1
2
1.00
1
C
10.51
13.669
18.419
18.668
A
N9
DG
2
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A
N9
DG
1
2
1.00
1
N
9.59
12.360
18.786
18.634
A
C8
DG
2
ATOM
A
C8
DG
1
2
1.00
1
C
10.21
11.526
17.740
18.498
A
N7
DG
2
ATOM
A
N7
DG
1
2
1.00
1
N
9.02
12.351
16.683
18.375
A
C5
DG
2
ATOM
A
C5
DG
1
2
1.00
1
C
8.91
12.143
15.319
18.191
A
C6
DG
2
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A
C6
DG
1
2
1.00
1
C
10.35
10.992
14.785
18.133
A
O6
DG
2
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A
O6
DG
1
2
1.00
1
O
7.95
13.178
14.442
18.183
A
N1
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2
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A
N1
DG
1
2
1.00
1
N
7.10
14.425
14.979
18.321
A
C2
DG
2
ATOM
A
C2
DG
1
2
1.00
1
C
6.99
15.399
14.219
18.309
A
N2
DG
2
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A
N2
DG
1
2
1.00
1
N
8.24
14.786
16.206
18.481
A
N3
DG
2
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A
N3
DG
1
2
1.00
1
N
8.69
13.705
17.034
18.500
A
C4
DG
2
ATOM
A
C4
DG
1
2
1.00
1
C
21.51
18.010
21.803
17.222
A
P
DA
3
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A
P
DA
1
3
1.00
1
P
20.89
18.615
22.654
18.120
A
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3
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A
OP1
DA
1
3
1.00
1
O
22.11
17.052
22.157
16.116
A
OP2
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3
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A
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1
3
1.00
1
O
18.52
19.151
20.825
16.672
A
O5'
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3
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A
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DA
1
3
1.00
1
O
16.75
20.074
20.316
17.655
A
C5'
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3
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A
C5'
DA
1
3
1.00
1
C
15.50
20.300
18.952
16.936
A
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3
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A
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1
3
1.00
1
C
13.53
19.068
18.194
17.017
A
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3
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A
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1
3
1.00
1
O
15.11
20.696
18.975
15.393
A
C3'
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3
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A
C3'
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1
3
1.00
1
C
15.15
21.868
18.275
15.285
A
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3
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A
O3'
DA
1
3
1.00
1
O
14.32
19.533
18.284
14.706
A
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3
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A
C2'
DA
1
3
1.00
1
C
12.43
18.920
17.372
15.823
A
C1'
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3
ATOM
A
C1'
DA
1
3
1.00
1
C
10.73
17.522
17.297
15.666
A
N9
DA
3
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A
N9
DA
1
3
1.00
1
N
10.55
16.662
18.326
15.622
A
C8
DA
3
ATOM
A
C8
DA
1
3
1.00
1
C
10.15
15.397
17.916
15.395
A
N7
DA
3
ATOM
A
N7
DA
1
3
1.00
1
N
10.00
15.520
16.535
15.318
A
C5
DA
3
ATOM
A
C5
DA
1
3
1.00
1
C
9.00
14.531
15.531
15.041
A
C6
DA
3
ATOM
A
C6
DA
1
3
1.00
1
C
8.94
13.218
15.768
14.922
A
N6
DA
3
ATOM
A
N6
DA
1
3
1.00
1
N
8.15
14.931
14.298
14.985
A
N1
DA
3
ATOM
A
N1
DA
1
3
1.00
1
N
9.23
16.284
14.070
15.158
A
C2
DA
3
ATOM
A
C2
DA
1
3
1.00
1
C
9.55
17.283
14.865
15.317
A
N3
DA
3
ATOM
A
N3
DA
1
3
1.00
1
N
9.75
16.786
16.137
15.394
A
C4
DA
3
ATOM
A
C4
DA
1
3
1.00
1
C
16.94
22.605
18.101
13.836
A
P
DT
4
ATOM
A
P
DT
1
4
1.00
1
P
17.06
23.921
17.736
14.311
A
OP1
DT
4
ATOM
A
OP1
DT
1
4
1.00
1
O
16.49
22.241
19.147
13.052
A
OP2
DT
4
ATOM
A
OP2
DT
1
4
1.00
1
O
16.36
21.995
16.674
13.295
A
O5'
DT
4
ATOM
A
O5'
DT
1
4
1.00
1
O
14.67
22.437
15.484
13.778
A
C5'
DT
4
ATOM
A
C5'
DT
1
4
1.00
1
C
13.05
21.692
14.386
13.059
A
C4'
DT
4
ATOM
A
C4'
DT
1
4
1.00
1
C
12.38
20.319
14.575
13.132
A
O4'
DT
4
ATOM
A
O4'
DT
1
4
1.00
1
O
14.49
22.098
14.454
11.480
A
C3'
DT
4
ATOM
A
C3'
DT
1
4
1.00
1
C
17.17
22.636
13.185
11.226
A
O3'
DT
4
ATOM
A
O3'
DT
1
4
1.00
1
O
12.58
20.790
14.654
10.753
A
C2'
DT
4
ATOM
A
C2'
DT
1
4
1.00
1
C
11.39
19.756
14.229
11.796
A
C1'
DT
4
ATOM
A
C1'
DT
1
4
1.00
1
C
10.89
18.463
14.949
11.752
A
N1
DT
4
ATOM
A
N1
DT
1
4
1.00
1
N
9.80
17.347
14.174
11.743
A
C2
DT
4
ATOM
A
C2
DT
1
4
1.00
1
C
11.32
17.392
12.938
11.678
A
O2
DT
4
ATOM
A
O2
DT
1
4
1.00
1
O
9.09
16.159
14.780
11.698
A
N3
DT
4
ATOM
A
N3
DT
1
4
1.00
1
N
9.65
15.997
16.140
11.725
A
C4
DT
4
ATOM
A
C4
DT
1
4
1.00
1
C
10.75
14.865
16.581
11.696
A
O4
DT
4
ATOM
A
O4
DT
1
4
1.00
1
O
10.34
17.188
16.962
11.783
A
C5
DT
4
ATOM
A
C5
DT
1
4
1.00
1
C
10.82
17.118
18.440
11.829
A
C7
DT
4
ATOM
A
C7
DT
1
4
1.00
1
C
10.50
18.377
16.321
11.825
A
C6
DT
4
ATOM
A
C6
DT
1
4
1.00
1
C
18.86
23.546
12.973
9.956
A
P
DC
5
ATOM
A
P
DC
1
5
1.00
1
P
20.29
24.207
11.686
10.325
A
OP1
DC
5
ATOM
A
OP1
DC
1
5
1.00
1
O
18.94
24.128
14.195
9.603
A
OP2
DC
5
ATOM
A
OP2
DC
1
5
1.00
1
O
16.83
22.571
12.371
8.744
A
O5'
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5
ATOM
A
O5'
DC
1
5
1.00
1
O
15.12
21.740
11.302
9.050
A
C5'
DC
5
ATOM
A
C5'
DC
1
5
1.00
1
C
14.76
20.665
11.394
7.909
A
C4'
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5
ATOM
A
C4'
DC
1
5
1.00
1
C
13.58
19.685
12.317
8.475
A
O4'
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5
ATOM
A
O4'
DC
1
5
1.00
1
O
14.40
21.002
11.933
6.491
A
C3'
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5
ATOM
A
C3'
DC
1
5
1.00
1
C
16.47
20.342
11.133
5.562
A
O3'
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5
ATOM
A
O3'
DC
1
5
1.00
1
O
12.68
20.410
13.337
6.432
A
C2'
DC
5
ATOM
A
C2'
DC
1
5
1.00
1
C
11.92
19.249
13.116
7.487
A
C1'
DC
5
ATOM
A
C1'
DC
1
5
1.00
1
C
10.24
18.551
14.335
7.875
A
N1
DC
5
ATOM
A
N1
DC
1
5
1.00
1
N
9.29
17.201
14.186
8.130
A
C2
DC
5
ATOM
A
C2
DC
1
5
1.00
1
C
9.73
16.738
13.035
8.162
A
O2
DC
5
ATOM
A
O2
DC
1
5
1.00
1
O
9.65
16.447
15.235
8.279
A
N3
DC
5
ATOM
A
N3
DC
1
5
1.00
1
N
9.86
16.928
16.568
8.300
A
C4
DC
5
ATOM
A
C4
DC
1
5
1.00
1
C
9.85
16.112
17.620
8.504
A
N4
DC
5
ATOM
A
N4
DC
1
5
1.00
1
N
9.70
18.356
16.747
8.112
A
C5
DC
5
ATOM
A
C5
DC
1
5
1.00
1
C
10.59
19.060
15.665
7.868
A
C6
DC
5
ATOM
A
C6
DC
1
5
1.00
1
C
19.22
21.145
10.034
4.702
A
P
DG
6
ATOM
A
P
DG
1
6
1.00
1
P
18.49
21.651
9.053
5.656
A
OP1
DG
6
ATOM
A
OP1
DG
1
6
1.00
1
O
18.06
22.043
10.904
3.854
A
OP2
DG
6
ATOM
A
OP2
DG
1
6
1.00
1
O
16.87
20.157
9.114
3.877
A
O5'
DG
6
ATOM
A
O5'
DG
1
6
1.00
1
O
15.55
19.198
8.392
4.576
A
C5'
DG
6
ATOM
A
C5'
DG
1
6
1.00
1
C
13.62
18.200
7.852
3.549
A
C4'
DG
6
ATOM
A
C4'
DG
1
6
1.00
1
C
13.42
17.355
8.977
3.159
A
O4'
DG
6
ATOM
A
O4'
DG
1
6
1.00
1
O
12.63
18.839
7.333
2.269
A
C3'
DG
6
ATOM
A
C3'
DG
1
6
1.00
1
C
13.69
18.060
6.246
1.896
A
O3'
DG
6
ATOM
A
O3'
DG
1
6
1.00
1
O
12.64
18.783
8.481
1.299
A
C2'
DG
6
ATOM
A
C2'
DG
1
6
1.00
1
C
11.57
17.456
9.219
1.686
A
C1'
DG
6
ATOM
A
C1'
DG
1
6
1.00
1
C
9.91
17.516
10.644
1.656
A
N9
DG
6
ATOM
A
N9
DG
1
6
1.00
1
N
9.54
18.550
11.458
1.710
A
C8
DG
6
ATOM
A
C8
DG
1
6
1.00
1
C
10.86
18.219
12.719
1.713
A
N7
DG
6
ATOM
A
N7
DG
1
6
1.00
1
N
9.99
16.837
12.698
1.636
A
C5
DG
6
ATOM
A
C5
DG
1
6
1.00
1
C
10.04
15.864
13.754
1.589
A
C6
DG
6
ATOM
A
C6
DG
1
6
1.00
1
C
11.67
16.174
14.986
1.628
A
O6
DG
6
ATOM
A
O6
DG
1
6
1.00
1
O
10.02
14.581
13.434
1.536
A
N1
DG
6
ATOM
A
N1
DG
1
6
1.00
1
N
9.53
14.242
12.120
1.517
A
C2
DG
6
ATOM
A
C2
DG
1
6
1.00
1
C
9.75
13.058
11.789
1.470
A
N2
DG
6
ATOM
A
N2
DG
1
6
1.00
1
N
8.79
15.056
11.062
1.554
A
N3
DG
6
ATOM
A
N3
DG
1
6
1.00
1
N
9.65
16.332
11.448
1.615
A
C4
DG
6
ATOM
A
C4
DG
1
6
1.00
1
C
9.85
15.442
18.471
5.008
A
C1
DM1
7
HETATM
B
C1
DM1
2
1.00
1
C
9.83
16.644
19.206
5.019
A
C2
DM1
7
HETATM
B
C2
DM1
2
1.00
1
C
10.66
17.868
18.531
4.932
A
C3
DM1
7
HETATM
B
C3
DM1
2
1.00
1
C
9.90
17.902
17.139
4.863
A
C4
DM1
7
HETATM
B
C4
DM1
2
1.00
1
C
11.23
19.102
16.529
4.795
A
O4
DM1
7
HETATM
B
O4
DM1
2
1.00
1
O
9.66
16.680
16.370
4.922
A
C5
DM1
7
HETATM
B
C5
DM1
2
1.00
1
C
8.17
16.650
14.983
4.905
A
C6
DM1
7
HETATM
B
C6
DM1
2
1.00
1
C
10.35
17.753
14.276
4.801
A
O6
DM1
7
HETATM
B
O6
DM1
2
1.00
1
O
7.98
15.414
14.267
4.885
A
C7
DM1
7
HETATM
B
C7
DM1
2
1.00
1
C
8.32
15.410
12.865
4.858
A
C8
DM1
7
HETATM
B
C8
DM1
2
1.00
1
C
8.95
16.557
12.136
4.829
A
O8
DM1
7
HETATM
B
O8
DM1
2
1.00
1
O
8.24
14.140
12.158
4.871
A
C9
DM1
7
HETATM
B
C9
DM1
2
1.00
1
C
10.08
14.243
10.678
4.868
A
C10
DM1
7
HETATM
B
C10
DM1
2
1.00
1
C
13.17
14.922
10.432
6.141
A
O10
DM1
7
HETATM
B
O10
DM1
2
1.00
1
O
10.64
12.938
9.859
4.696
A
C11
DM1
7
HETATM
B
C11
DM1
2
1.00
1
C
11.23
11.778
10.648
5.447
A
C12
DM1
7
HETATM
B
C12
DM1
2
1.00
1
C
12.20
11.790
10.821
6.951
A
O12
DM1
7
HETATM
B
O12
DM1
2
1.00
1
O
12.91
10.479
9.896
5.212
A
C13
DM1
7
HETATM
B
C13
DM1
2
1.00
1
C
14.09
9.733
10.313
4.183
A
O13
DM1
7
HETATM
B
O13
DM1
2
1.00
1
O
14.04
10.164
8.718
6.072
A
C14
DM1
7
HETATM
B
C14
DM1
2
1.00
1
C
8.97
11.649
12.119
4.913
A
C15
DM1
7
HETATM
B
C15
DM1
2
1.00
1
C
7.54
12.922
12.871
4.896
A
C16
DM1
7
HETATM
B
C16
DM1
2
1.00
1
C
7.85
13.003
14.273
4.913
A
C17
DM1
7
HETATM
B
C17
DM1
2
1.00
1
C
9.51
11.780
14.925
4.872
A
O17
DM1
7
HETATM
B
O17
DM1
2
1.00
1
O
7.63
14.208
14.982
4.905
A
C18
DM1
7
HETATM
B
C18
DM1
2
1.00
1
C
8.21
14.243
16.403
4.942
A
C19
DM1
7
HETATM
B
C19
DM1
2
1.00
1
C
9.91
13.117
17.150
4.983
A
O19
DM1
7
HETATM
B
O19
DM1
2
1.00
1
O
8.84
15.469
17.062
4.970
A
C20
DM1
7
HETATM
B
C20
DM1
2
1.00
1
C
12.19
20.409
17.249
4.926
A
C21
DM1
7
HETATM
B
C21
DM1
2
1.00
1
C
14.52
15.791
9.288
6.458
A
C1'
DM1
7
HETATM
B
C1'
DM1
2
1.00
1
C
15.26
16.934
9.797
7.419
A
C2'
DM1
7
HETATM
B
C2'
DM1
2
1.00
1
C
15.60
16.334
10.054
8.864
A
C3'
DM1
7
HETATM
B
C3'
DM1
2
1.00
1
C
13.77
17.456
10.460
9.771
A
N3'
DM1
7
HETATM
B
N3'
DM1
2
1.00
1
N
15.76
15.543
8.761
9.352
A
C4'
DM1
7
HETATM
B
C4'
DM1
2
1.00
1
C
18.22
16.567
7.719
9.356
A
O4'
DM1
7
HETATM
B
O4'
DM1
2
1.00
1
O
15.13
14.461
8.366
8.376
A
C5'
DM1
7
HETATM
B
C5'
DM1
2
1.00
1
C
15.54
14.971
8.210
7.027
A
O5'
DM1
7
HETATM
B
O5'
DM1
2
1.00
1
O
15.89
13.677
7.086
8.710
A
C6'
DM1
7
HETATM
B
C6'
DM1
2
1.00
1
C
42.53
9.289
18.841
8.877
A
N1
SPM
8
HETATM
C
N1
SPM
3
1.00
1
N
42.31
10.079
18.950
10.240
A
C2
SPM
8
HETATM
C
C2
SPM
3
1.00
1
C
41.36
10.525
17.672
10.982
A
C3
SPM
8
HETATM
C
C3
SPM
3
1.00
1
C
40.34
9.581
16.893
11.818
A
C4
SPM
8
HETATM
C
C4
SPM
3
1.00
1
C
39.06
8.973
15.536
11.427
A
N5
SPM
8
HETATM
C
N5
SPM
3
1.00
1
N
38.30
8.666
14.627
12.544
A
C6
SPM
8
HETATM
C
C6
SPM
3
1.00
1
C
38.00
9.388
14.794
13.846
A
C7
SPM
8
HETATM
C
C7
SPM
3
1.00
1
C
38.38
8.870
14.567
15.141
A
C8
SPM
8
HETATM
C
C8
SPM
3
1.00
1
C
39.01
7.394
14.321
15.531
A
C9
SPM
8
HETATM
C
C9
SPM
3
1.00
1
C
39.54
7.013
12.817
15.775
A
N10
SPM
8
HETATM
C
N10
SPM
3
1.00
1
N
39.98
7.044
12.404
17.330
A
C11
SPM
8
HETATM
C
C11
SPM
3
1.00
1
C
39.40
7.847
11.151
17.624
A
C12
SPM
8
HETATM
C
C12
SPM
3
1.00
1
C
39.33
7.752
9.974
18.384
A
C13
SPM
8
HETATM
C
C13
SPM
3
1.00
1
C
39.87
8.480
8.688
17.870
A
N14
SPM
8
HETATM
C
N14
SPM
3
1.00
1
N
32.32
13.247
8.320
24.155
A
NA
NA
9
HETATM
D
NA
NA
4
1.00
1
NA
41.33
22.086
13.800
3.151
A
O
HOH
10
HETATM
E
O
HOH
5
1.00
1
O
34.97
18.055
16.752
1.357
A
O
HOH
11
HETATM
E
O
HOH
5
1.00
1
O
42.24
21.319
16.285
0.748
A
O
HOH
12
HETATM
E
O
HOH
5
1.00
1
O
37.07
14.119
20.158
1.552
A
O
HOH
13
HETATM
E
O
HOH
5
1.00
1
O
44.16
14.898
22.259
2.857
A
O
HOH
14
HETATM
E
O
HOH
5
1.00
1
O
41.15
17.513
22.882
4.126
A
O
HOH
15
HETATM
E
O
HOH
5
1.00
1
O
41.63
19.755
21.795
5.234
A
O
HOH
16
HETATM
E
O
HOH
5
1.00
1
O
42.79
20.210
6.590
7.619
A
O
HOH
17
HETATM
E
O
HOH
5
1.00
1
O
43.00
17.673
5.925
6.955
A
O
HOH
18
HETATM
E
O
HOH
5
1.00
1
O
44.64
15.317
5.734
4.661
A
O
HOH
19
HETATM
E
O
HOH
5
1.00
1
O
28.66
14.309
8.744
1.362
A
O
HOH
20
HETATM
E
O
HOH
5
1.00
1
O
29.70
7.361
18.508
23.846
A
O
HOH
21
HETATM
E
O
HOH
5
1.00
1
O
39.13
11.693
9.549
1.238
A
O
HOH
22
HETATM
E
O
HOH
5
1.00
1
O
53.35
30.455
11.948
11.842
A
O
HOH
23
HETATM
E
O
HOH
5
1.00
1
O
51.86
26.912
15.352
5.365
A
O
HOH
24
HETATM
E
O
HOH
5
1.00
1
O
48.60
11.315
24.672
5.532
A
O
HOH
25
HETATM
E
O
HOH
5
1.00
1
O
29.19
10.461
25.334
22.825
A
O
HOH
26
HETATM
E
O
HOH
5
1.00
1
O
24.74
20.694
18.432
10.675
A
O
HOH
27
HETATM
E
O
HOH
5
1.00
1
O
44.39
15.987
0.291
1.378
A
O
HOH
28
HETATM
E
O
HOH
5
1.00
1
O
40.79
16.192
2.783
-0.170
A
O
HOH
29
HETATM
E
O
HOH
5
1.00
1
O
43.69
15.337
5.582
1.220
A
O
HOH
30
HETATM
E
O
HOH
5
1.00
1
O
38.57
8.100
15.545
18.698
A
O
HOH
31
HETATM
E
O
HOH
5
1.00
1
O
43.46
7.539
8.812
3.454
A
O
HOH
32
HETATM
E
O
HOH
5
1.00
1
O
46.33
11.123
5.619
5.527
A
O
HOH
33
HETATM
E
O
HOH
5
1.00
1
O
35.49
8.931
21.388
19.878
A
O
HOH
34
HETATM
E
O
HOH
5
1.00
1
O
32.38
19.970
22.961
20.190
A
O
HOH
35
HETATM
E
O
HOH
5
1.00
1
O
37.81
23.646
10.492
12.974
A
O
HOH
36
HETATM
E
O
HOH
5
1.00
1
O
47.20
13.631
23.987
15.981
A
O
HOH
37
HETATM
E
O
HOH
5
1.00
1
O
49.01
13.064
26.920
5.053
A
O
HOH
38
HETATM
E
O
HOH
5
1.00
1
O
19.36
16.616
9.510
12.718
A
O
HOH
39
HETATM
E
O
HOH
5
1.00
1
O
51.44
26.676
16.372
1.068
A
O
HOH
40
HETATM
E
O
HOH
5
1.00
1
O
30.67
9.268
12.038
1.582
A
O
HOH
41
HETATM
E
O
HOH
5
1.00
1
O
31.82
11.350
22.086
18.894
A
O
HOH
42
HETATM
E
O
HOH
5
1.00
1
O
28.72
22.524
15.684
7.646
A
O
HOH
43
HETATM
E
O
HOH
5
1.00
1
O
46.08
9.503
1.274
24.276
A
O
HOH
44
HETATM
E
O
HOH
5
1.00
1
O
47.99
23.559
15.311
4.692
A
O
HOH
45
HETATM
E
O
HOH
5
1.00
1
O
49.20
24.807
10.239
2.269
A
O
HOH
46
HETATM
E
O
HOH
5
1.00
1
O
47.80
8.220
17.077
20.869
A
O
HOH
47
HETATM
E
O
HOH
5
1.00
1
O
49.79
0.824
7.964
13.121
A
O
HOH
48
HETATM
E
O
HOH
5
1.00
1
O
52.72
12.302
24.190
8.633
A
O
HOH
49
HETATM
E
O
HOH
5
1.00
1
O
46.13
22.157
18.198
8.486
A
O
HOH
50
HETATM
E
O
HOH
5
1.00
1
O
25.61
19.578
8.171
10.121
A
O
HOH
51
HETATM
E
O
HOH
5
1.00
1
O
39.26
6.804
13.246
13.229
A
O
HOH
52
HETATM
E
O
HOH
5
1.00
1
O
43.77
11.250
8.544
28.355
A
O
HOH
53
HETATM
E
O
HOH
5
1.00
1
O
44.31
24.251
14.923
1.056
A
O
HOH
54
HETATM
E
O
HOH
5
1.00
1
O
41.91
17.487
6.628
12.919
A
O
HOH
55
HETATM
E
O
HOH
5
1.00
1
O
42.04
20.621
5.959
25.581
A
O
HOH
56
HETATM
E
O
HOH
5
1.00
1
O
43.05
17.780
5.894
25.736
A
O
HOH
57
HETATM
E
O
HOH
5
1.00
1
O
42.18
18.531
3.536
20.349
A
O
HOH
58
HETATM
E
O
HOH
5
1.00
1
O
39.13
6.103
16.840
15.455
A
O
HOH
59
HETATM
E
O
HOH
5
1.00
1
O
47.26
31.087
16.418
9.341
A
O
HOH
60
HETATM
E
O
HOH
5
1.00
1
O
57.53
9.355
6.382
3.310
A
O
HOH
61
HETATM
E
O
HOH
5
1.00
1
O
40.25
22.792
17.825
2.236
A
O
HOH
62
HETATM
E
O
HOH
5
1.00
1
O
50.67
1.620
15.649
14.321
A
O
HOH
63
HETATM
E
O
HOH
5
1.00
1
O
46.90
21.075
19.405
1.464
A
O
HOH
64
HETATM
E
O
HOH
5
1.00
1
O
63.01
3.164
13.991
19.689
A
O
HOH
65
HETATM
E
O
HOH
5
1.00
1
O
56.00
6.186
10.017
12.817
A
O
HOH
66
HETATM
E
O
HOH
5
1.00
1
O
61.92
16.213
22.438
25.523
A
O
HOH
67
HETATM
E
O
HOH
5
1.00
1
O
30.50
9.108
24.140
20.730
A
O
HOH
68
HETATM
E
O
HOH
5
1.00
1
O
47.08
24.802
13.350
2.949
A
O
HOH
69
HETATM
E
O
HOH
5
1.00
1
O
0.035575
0.000000
0.000000
0.000000
0.035575
0.000000
0.000000
0.000000
0.018839
0.00000
0.00000
0.00000
Frederick, C.A.
Williams, L.D.
Ughetto, G.
Van Der Marel, G.A.
Van Boom, J.H.
Rich, A.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
28.110
28.110
53.080
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C27 H29 N O10
527.520
DAUNOMYCIN
DAUNORUBICIN
non-polymer
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C10 H26 N4
202.340
SPERMINE
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
Y
108
N
C
Y
109
N
C
Y
110
N
C
Y
111
N
C
N
112
N
O
Y
113
N
C
N
114
N
C
N
115
N
O
Y
116
N
C
Y
117
N
C
N
118
N
O
Y
119
N
C
N
120
S
C
N
121
N
O
N
122
N
C
N
123
S
C
N
124
N
O
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
Y
129
N
C
Y
130
N
C
N
131
N
O
Y
132
N
C
N
133
N
C
N
134
N
O
Y
135
N
C
N
136
N
C
N
137
R
C
N
138
N
C
N
139
S
C
N
140
N
N
N
141
S
C
N
142
N
O
N
143
S
C
N
144
N
O
N
145
N
C
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
O
N
176
N
P
N
177
N
O
N
178
N
O
N
179
N
O
N
180
N
C
N
181
R
C
N
182
N
O
N
183
S
C
N
184
N
O
N
185
N
C
N
186
R
C
N
187
N
N
N
188
N
C
N
189
N
O
N
190
N
N
N
191
N
C
N
192
N
O
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
NA
N
215
N
N
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
N
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
N
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
N
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
Y
113
N
doub
Y
114
N
sing
N
115
N
sing
Y
116
N
sing
N
117
N
sing
Y
118
N
doub
N
119
N
sing
N
120
N
sing
Y
121
N
sing
N
122
N
sing
N
123
N
sing
Y
124
N
doub
N
125
N
doub
N
126
N
sing
Y
127
N
doub
Y
128
N
sing
N
129
N
sing
Y
130
N
sing
N
131
N
sing
N
132
N
sing
Y
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
N
154
N
sing
Y
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
29
2538
2549
10.1021/bi00462a016
2334681
Structural comparison of anticancer drug-DNA complexes: adriamycin and daunomycin.
1990
10.2210/pdb1d10/pdb
pdb_00001d10
0.035575
0.000000
0.000000
0.000000
0.035575
0.000000
0.000000
0.000000
0.018839
0.00000
0.00000
0.00000
288.00
1
DIFFRACTOMETER
x-ray
1
1.0
1809.217
DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
1
syn
polymer
527.520
DAUNOMYCIN
1
syn
non-polymer
202.340
SPERMINE
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
60
nat
water
no
no
(DC)(DG)(DA)(DT)(DC)(DG)
CGATCG
A
polydeoxyribonucleotide
n
n
n
n
n
n
2.90
57.55
VAPOR DIFFUSION
VAPOR DIFFUSION
ROOM TEMPERATURE
WATER
1
MPD
1
NA CACODYLATE
1
MGCL2
1
SPERMINE
1
9.465
1
19
A
1
A
6
-2.062
A_DC1:DG6_A
1
1.587
0.212
-0.174
-0.177
-16.287
1
19
A
2
A
5
-0.407
A_DG2:DC5_A
2
0.246
-0.086
-0.236
-0.168
-6.655
1
20
A
3
A
4
3.025
A_DA3:DT4_A
3
-3.311
0.069
0.062
-0.055
6.655
1
20
A
4
A
3
3.025
A_DT4:DA3_A
4
-3.311
-0.069
0.062
-0.055
16.287
1
19
A
5
A
2
-0.407
A_DC5:DG2_A
5
0.246
0.086
-0.236
-0.168
-9.465
1
19
A
6
A
1
-2.062
A_DG6:DC1_A
6
1.587
-0.212
-0.174
-0.177
7.027
35.652
A
A
1
2
-2.186
A
A
6
5
7.065
-1.338
1.360
1.121
AA_DC1DG2:DC5DG6_AA
1
0.186
-0.303
35.627
2.249
-2.164
3.350
31.754
A
A
2
3
1.017
A
A
5
4
3.162
0.554
-1.370
0.562
AA_DG2DA3:DT4DC5_AA
2
-5.224
9.589
31.328
0.926
1.544
3.174
29.430
A
A
3
4
1.787
A
A
4
3
3.196
0.908
0.000
-0.672
AA_DA3DT4:DA3DT4_AA
3
0.000
0.000
29.416
-1.512
0.000
3.350
31.754
A
A
4
5
1.017
A
A
3
2
3.162
0.554
1.370
0.562
AA_DT4DC5:DG2DA3_AA
4
5.224
-9.589
31.328
0.926
-1.544
7.027
35.652
A
A
5
6
-2.186
A
A
2
1
7.065
-1.338
-1.360
1.121
AA_DC5DG6:DC1DG2_AA
5
-0.186
0.303
35.627
2.249
2.164
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1990-10-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
BNL
1989-10-20
REL
DM1
DAUNOMYCIN
SPM
SPERMINE
NA
SODIUM ION
HOH
water
DM1
7
2
DM1
DM1
7
A
SPM
8
3
SPM
SPM
8
A
NA
9
4
NA
NA
9
A
HOH
10
5
HOH
HOH
10
A
HOH
11
5
HOH
HOH
11
A
HOH
12
5
HOH
HOH
12
A
HOH
13
5
HOH
HOH
13
A
HOH
14
5
HOH
HOH
14
A
HOH
15
5
HOH
HOH
15
A
HOH
16
5
HOH
HOH
16
A
HOH
17
5
HOH
HOH
17
A
HOH
18
5
HOH
HOH
18
A
HOH
19
5
HOH
HOH
19
A
HOH
20
5
HOH
HOH
20
A
HOH
21
5
HOH
HOH
21
A
HOH
22
5
HOH
HOH
22
A
HOH
23
5
HOH
HOH
23
A
HOH
24
5
HOH
HOH
24
A
HOH
25
5
HOH
HOH
25
A
HOH
26
5
HOH
HOH
26
A
HOH
27
5
HOH
HOH
27
A
HOH
28
5
HOH
HOH
28
A
HOH
29
5
HOH
HOH
29
A
HOH
30
5
HOH
HOH
30
A
HOH
31
5
HOH
HOH
31
A
HOH
32
5
HOH
HOH
32
A
HOH
33
5
HOH
HOH
33
A
HOH
34
5
HOH
HOH
34
A
HOH
35
5
HOH
HOH
35
A
HOH
36
5
HOH
HOH
36
A
HOH
37
5
HOH
HOH
37
A
HOH
38
5
HOH
HOH
38
A
HOH
39
5
HOH
HOH
39
A
HOH
40
5
HOH
HOH
40
A
HOH
41
5
HOH
HOH
41
A
HOH
42
5
HOH
HOH
42
A
HOH
43
5
HOH
HOH
43
A
HOH
44
5
HOH
HOH
44
A
HOH
45
5
HOH
HOH
45
A
HOH
46
5
HOH
HOH
46
A
HOH
47
5
HOH
HOH
47
A
HOH
48
5
HOH
HOH
48
A
HOH
49
5
HOH
HOH
49
A
HOH
50
5
HOH
HOH
50
A
HOH
51
5
HOH
HOH
51
A
HOH
52
5
HOH
HOH
52
A
HOH
53
5
HOH
HOH
53
A
HOH
54
5
HOH
HOH
54
A
HOH
55
5
HOH
HOH
55
A
HOH
56
5
HOH
HOH
56
A
HOH
57
5
HOH
HOH
57
A
HOH
58
5
HOH
HOH
58
A
HOH
59
5
HOH
HOH
59
A
HOH
60
5
HOH
HOH
60
A
HOH
61
5
HOH
HOH
61
A
HOH
62
5
HOH
HOH
62
A
HOH
63
5
HOH
HOH
63
A
HOH
64
5
HOH
HOH
64
A
HOH
65
5
HOH
HOH
65
A
HOH
66
5
HOH
HOH
66
A
HOH
67
5
HOH
HOH
67
A
HOH
68
5
HOH
HOH
68
A
HOH
69
5
HOH
HOH
69
A
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
A
3
n
3
DA
3
A
T
4
n
4
DT
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
28.1100000000
28.1100000000
26.5400000000
1
4.88
0.70
110.30
115.18
A
A
A
C1'
O4'
C4'
DC
DC
DC
1
1
1
N
1
-5.52
0.80
105.90
100.38
A
A
A
O4'
C1'
C2'
DC
DC
DC
1
1
1
N
1
6.45
0.50
119.90
126.35
A
A
A
C2
N3
C4
DC
DC
DC
1
1
1
N
1
-8.33
0.40
121.90
113.57
A
A
A
N3
C4
C5
DC
DC
DC
1
1
1
N
1
3.72
0.50
121.00
124.72
A
A
A
C5
C6
N1
DC
DC
DC
1
1
1
N
1
4.74
0.70
118.00
122.74
A
A
A
N3
C4
N4
DC
DC
DC
1
1
1
N
1
11.94
1.50
119.60
131.54
A
A
A
OP1
P
OP2
DG
DG
DG
2
2
2
N
1
-5.49
0.90
105.70
100.21
A
A
A
O5'
P
OP2
DG
DG
DG
2
2
2
N
1
-6.55
0.80
109.40
102.85
A
A
A
O5'
C5'
C4'
DG
DG
DG
2
2
2
N
1
-4.90
0.80
102.40
97.50
A
A
A
C3'
C2'
C1'
DG
DG
DG
2
2
2
N
1
-9.42
0.80
105.90
96.48
A
A
A
O4'
C1'
C2'
DG
DG
DG
2
2
2
N
1
6.42
0.30
108.30
114.72
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-8.86
0.60
125.10
116.24
A
A
A
C6
N1
C2
DG
DG
DG
2
2
2
N
1
6.12
0.60
123.90
130.02
A
A
A
N1
C2
N3
DG
DG
DG
2
2
2
N
1
-5.17
0.60
118.80
113.63
A
A
A
C4
C5
C6
DG
DG
DG
2
2
2
N
1
9.85
0.50
111.50
121.35
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
-8.43
0.70
119.90
111.47
A
A
A
N3
C2
N2
DG
DG
DG
2
2
2
N
1
-5.11
0.60
119.90
114.79
A
A
A
N1
C6
O6
DG
DG
DG
2
2
2
N
1
-5.00
0.60
128.60
123.60
A
A
A
C5
C6
O6
DG
DG
DG
2
2
2
N
1
-14.39
0.80
109.40
95.01
A
A
A
O5'
C5'
C4'
DA
DA
DA
3
3
3
N
1
-5.17
0.70
108.00
102.83
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
1
3.02
0.50
129.30
132.32
A
A
A
N1
C2
N3
DA
DA
DA
3
3
3
N
1
-3.18
0.50
110.60
107.42
A
A
A
C2
N3
C4
DA
DA
DA
3
3
3
N
1
9.34
1.50
119.60
128.94
A
A
A
OP1
P
OP2
DT
DT
DT
4
4
4
N
1
9.54
1.50
119.60
129.14
A
A
A
OP1
P
OP2
DC
DC
DC
5
5
5
N
1
-8.39
0.90
105.70
97.31
A
A
A
O5'
P
OP1
DC
DC
DC
5
5
5
N
1
-7.60
0.80
109.40
101.80
A
A
A
O5'
C5'
C4'
DC
DC
DC
5
5
5
N
1
-4.91
0.80
102.40
97.49
A
A
A
C3'
C2'
C1'
DC
DC
DC
5
5
5
N
1
8.90
0.30
108.30
117.20
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
-3.51
0.40
120.30
116.79
A
A
A
C6
N1
C2
DC
DC
DC
5
5
5
N
1
4.41
0.50
119.90
124.31
A
A
A
C2
N3
C4
DC
DC
DC
5
5
5
N
1
-5.29
0.40
121.90
116.61
A
A
A
N3
C4
C5
DC
DC
DC
5
5
5
N
1
4.22
0.50
121.00
125.22
A
A
A
C5
C6
N1
DC
DC
DC
5
5
5
N
1
-6.11
0.90
105.70
99.59
A
A
A
O5'
P
OP1
DG
DG
DG
6
6
6
N
1
-7.33
0.70
108.00
100.67
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
-6.62
0.60
125.10
118.48
A
A
A
C6
N1
C2
DG
DG
DG
6
6
6
N
1
4.01
0.60
123.90
127.91
A
A
A
N1
C2
N3
DG
DG
DG
6
6
6
N
1
7.20
0.50
111.50
118.70
A
A
A
C5
C6
N1
DG
DG
DG
6
6
6
N
1
-3.25
0.40
105.40
102.15
A
A
A
N9
C4
C5
DG
DG
DG
6
6
6
N
1
-7.91
0.70
119.90
111.99
A
A
A
N3
C2
N2
DG
DG
DG
6
6
6
N
1
-5.49
0.60
128.60
123.11
A
A
A
C5
C6
O6
DG
DG
DG
6
6
6
N
1
A
A
C2'
C1'
DC
DC
1
1
0.103
0.010
1.519
1.622
N
1
A
A
O3'
C3'
DC
DC
1
1
-0.070
0.006
1.419
1.349
N
1
A
A
N3
C4
DC
DC
1
1
0.065
0.007
1.335
1.400
N
1
A
A
P
O5'
DG
DG
2
2
0.076
0.010
1.593
1.669
N
1
A
A
C2'
C1'
DG
DG
2
2
0.116
0.010
1.519
1.635
N
1
A
A
O4'
C4'
DG
DG
2
2
-0.073
0.010
1.446
1.373
N
1
A
A
C5
N7
DG
DG
2
2
-0.042
0.006
1.388
1.346
N
1
A
A
N7
C8
DG
DG
2
2
0.040
0.006
1.305
1.345
N
1
A
A
C2
N2
DG
DG
2
2
-0.106
0.010
1.341
1.235
N
1
A
A
P
OP1
DA
DA
3
3
-0.108
0.017
1.485
1.377
N
1
A
A
C5'
C4'
DA
DA
3
3
0.046
0.007
1.512
1.558
N
1
A
A
C4'
C3'
DA
DA
3
3
0.064
0.010
1.529
1.593
N
1
A
A
O3'
C3'
DA
DA
3
3
-0.050
0.006
1.419
1.369
N
1
A
A
C4
C5
DA
DA
3
3
-0.054
0.007
1.383
1.329
N
1
A
A
C6
N1
DA
DA
3
3
-0.054
0.007
1.351
1.297
N
1
A
A
P
OP2
DT
DT
4
4
-0.128
0.017
1.485
1.357
N
1
A
A
C4'
C3'
DT
DT
4
4
0.103
0.010
1.529
1.632
N
1
A
A
O4'
C1'
DT
DT
4
4
0.070
0.011
1.420
1.490
N
1
A
A
P
O5'
DC
DC
5
5
0.075
0.010
1.593
1.668
N
1
A
A
C5'
C4'
DC
DC
5
5
0.058
0.007
1.512
1.570
N
1
A
A
C2'
C1'
DC
DC
5
5
0.065
0.010
1.519
1.584
N
1
A
A
O4'
C1'
DC
DC
5
5
-0.075
0.012
1.418
1.343
N
1
A
A
N1
C6
DC
DC
5
5
0.057
0.006
1.367
1.424
N
1
A
A
C2
N3
DC
DC
5
5
-0.053
0.008
1.353
1.300
N
1
A
A
N3
C4
DC
DC
5
5
0.082
0.007
1.335
1.417
N
1
A
A
O4'
C1'
DG
DG
6
6
0.076
0.011
1.420
1.496
N
1
A
A
C6
N1
DG
DG
6
6
-0.068
0.007
1.391
1.323
N
1
A
A
C8
N9
DG
DG
6
6
-0.057
0.007
1.374
1.317
N
1
A
A
N9
C4
DG
DG
6
6
0.057
0.008
1.375
1.432
N
1
A
A
C2
N2
DG
DG
6
6
-0.111
0.010
1.341
1.230
N
0.1750000
1.500
10.000
2731
1
2.000
TR
isotropic
TR
isotropic
1.500
10.000
60
233
53
120
0
0.036
fix
fix
1.500
1D10
2.000
1
refinement
NUCLSQ
STRUCTURAL COMPARISON OF ANTICANCER DRUG-DNA COMPLEXES. ADRIAMYCIN AND DAUNOMYCIN
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
A
DG
6
A
N1
DG
6
8_665
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
A
DG
6
A
O6
DG
6
8_665
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
A
DG
6
A
N2
DG
6
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
A
DC
5
A
N3
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
A
DC
5
A
O2
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
A
DC
5
A
N4
DC
5
8_665
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
A
DT
4
A
N3
DT
4
8_665
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
A
DT
4
A
O4
DT
4
8_665
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
A
DA
3
A
N1
DA
3
8_665
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
A
DA
3
A
N6
DA
3
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
A
DG
2
A
N1
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
A
DG
2
A
O6
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
A
DG
2
A
N2
DG
2
8_665
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
A
DC
1
A
N3
DC
1
8_665
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
A
DC
1
A
O2
DC
1
8_665
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
A
DC
1
A
N4
DC
1
8_665
DNA
RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA
1D10
PDB
1
1D10
1
6
1D10
1
6
1D10
A
1
1
6
BINDING SITE FOR RESIDUE DM1 A 7
A
DM1
7
Software
9
BINDING SITE FOR RESIDUE SPM A 8
A
SPM
8
Software
11
BINDING SITE FOR RESIDUE NA A 9
A
NA
9
Software
5
A
DC
1
A
DC
1
9
8_665
A
DG
2
A
DG
2
9
8_665
A
DA
3
A
DA
3
9
8_665
A
DT
4
A
DT
4
9
1_555
A
DC
5
A
DC
5
9
1_555
A
DG
6
A
DG
6
9
1_555
A
SPM
8
C
SPM
9
8_665
A
NA
9
D
NA
9
8_665
A
HOH
32
E
HOH
9
1_555
A
DG
2
A
DG
2
11
8_665
A
DG
2
A
DG
2
11
1_555
A
DA
3
A
DA
3
11
8_665
A
DT
4
A
DT
4
11
8_665
A
DC
5
A
DC
5
11
8_665
A
DG
6
A
DG
6
11
3_545
A
DM1
7
B
DM1
11
8_665
A
HOH
27
E
HOH
11
8_665
A
HOH
50
E
HOH
11
8_665
A
HOH
52
E
HOH
11
1_555
A
HOH
59
E
HOH
11
1_555
A
DG
6
A
DG
6
5
8_665
A
DM1
7
B
DM1
5
8_665
A
HOH
10
E
HOH
5
8_665
A
HOH
11
E
HOH
5
8_665
A
HOH
12
E
HOH
5
8_665
92
P 41 21 2