0.035894 0.000000 0.000000 0.000000 0.035894 0.000000 0.000000 0.000000 0.018968 0.00000 0.00000 0.00000 Wang, A.H.-J. Ughetto, G. Quigley, G.J. Rich, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 27.860 27.860 52.720 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C27 H29 N O10 527.520 DAUNOMYCIN DAUNORUBICIN non-polymer C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Na 1 22.990 SODIUM ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H Y 108 N C Y 109 N C Y 110 N C Y 111 N C N 112 N O Y 113 N C N 114 N C N 115 N O Y 116 N C Y 117 N C N 118 N O Y 119 N C N 120 S C N 121 N O N 122 N C N 123 S C N 124 N O N 125 N C N 126 N O N 127 N C N 128 N C Y 129 N C Y 130 N C N 131 N O Y 132 N C N 133 N C N 134 N O Y 135 N C N 136 N C N 137 R C N 138 N C N 139 S C N 140 N N N 141 S C N 142 N O N 143 S C N 144 N O N 145 N C N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N O N 176 N P N 177 N O N 178 N O N 179 N O N 180 N C N 181 R C N 182 N O N 183 S C N 184 N O N 185 N C N 186 R C N 187 N N N 188 N C N 189 N O N 190 N N N 191 N C N 192 N O N 193 N C N 194 N C N 195 N C N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N O N 212 N H N 213 N H N 214 N NA N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing Y 113 N doub Y 114 N sing N 115 N sing Y 116 N sing N 117 N sing Y 118 N doub N 119 N sing N 120 N sing Y 121 N sing N 122 N sing N 123 N sing Y 124 N doub N 125 N doub N 126 N sing Y 127 N doub Y 128 N sing N 129 N sing Y 130 N sing N 131 N sing N 132 N sing Y 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing Y 153 N sing N 154 N sing Y 155 N doub N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing US Biochemistry BICHAW 0033 0006-2960 26 1152 1163 10.1021/bi00378a025 3567161 Interactions between an anthracycline antibiotic and DNA: molecular structure of daunomycin complexed to d(CpGpTpApCpG) at 1.2-A resolution. 1987 10.2210/pdb1d11/pdb pdb_00001d11 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 288.00 1 DIFFRACTOMETER NICOLET P3X x-ray 1 1.0 1809.217 DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') 1 syn polymer 527.520 DAUNOMYCIN 1 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 84 nat water no no (DC)(DG)(DT)(DA)(DC)(DG) CGTACG A polydeoxyribonucleotide n n n n n n 2.83 56.49 VAPOR DIFFUSION 6.50 pH 6.50, VAPOR DIFFUSION WATER 1 MPD 1 MGCL2 1 SPERMINE 1 NA CACODYLATE 1 WATER 2 MPD 2 8.171 1 19 A 1 A 6 -2.078 A_DC1:DG6_A 1 0.231 0.192 0.029 -0.159 -16.616 1 19 A 2 A 5 0.689 A_DG2:DC5_A 2 3.325 -0.043 -0.383 -0.045 -3.731 1 20 A 3 A 4 2.144 A_DT3:DA4_A 3 -6.996 -0.205 -0.036 -0.111 3.731 1 20 A 4 A 3 2.144 A_DA4:DT3_A 4 -6.996 0.205 -0.036 -0.111 16.616 1 19 A 5 A 2 0.689 A_DC5:DG2_A 5 3.325 0.043 -0.383 -0.045 -8.171 1 19 A 6 A 1 -2.078 A_DG6:DC1_A 6 0.231 -0.192 0.029 -0.159 6.974 35.036 A A 1 2 -4.698 A A 6 5 7.024 -2.824 1.220 1.162 AA_DC1DG2:DC5DG6_AA 1 2.266 -3.771 34.855 2.840 -1.297 3.165 28.557 A A 2 3 -3.341 A A 5 4 3.063 -1.644 -1.120 -0.052 AA_DG2DT3:DA4DC5_AA 2 -3.169 6.441 28.337 0.253 1.582 3.246 38.500 A A 3 4 11.902 A A 4 3 3.312 7.798 0.000 -0.016 AA_DT3DA4:DT3DA4_AA 3 0.000 0.000 37.731 -1.005 0.000 3.165 28.557 A A 4 5 -3.341 A A 3 2 3.063 -1.644 1.120 -0.052 AA_DA4DC5:DG2DT3_AA 4 3.169 -6.441 28.337 0.253 -1.582 6.974 35.036 A A 5 6 -4.698 A A 2 1 7.024 -2.824 -1.220 1.162 AA_DC5DG6:DC1DG2_AA 5 -2.266 3.771 34.855 2.840 1.297 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Structure summary Data collection Database references Derived calculations 1 0 1990-10-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2017-02-15 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y BNL 1989-10-20 REL DM1 DAUNOMYCIN NA SODIUM ION HOH water DM1 7 2 DM1 DM1 7 A NA 8 3 NA NA 8 A HOH 9 4 HOH HOH 9 A HOH 10 4 HOH HOH 10 A HOH 11 4 HOH HOH 11 A HOH 12 4 HOH HOH 12 A HOH 13 4 HOH HOH 13 A HOH 14 4 HOH HOH 14 A HOH 15 4 HOH HOH 15 A HOH 16 4 HOH HOH 16 A HOH 17 4 HOH HOH 17 A HOH 18 4 HOH HOH 18 A HOH 19 4 HOH HOH 19 A HOH 20 4 HOH HOH 20 A HOH 21 4 HOH HOH 21 A HOH 22 4 HOH HOH 22 A HOH 23 4 HOH HOH 23 A HOH 24 4 HOH HOH 24 A HOH 25 4 HOH HOH 25 A HOH 26 4 HOH HOH 26 A HOH 27 4 HOH HOH 27 A HOH 28 4 HOH HOH 28 A HOH 29 4 HOH HOH 29 A HOH 30 4 HOH HOH 30 A HOH 31 4 HOH HOH 31 A HOH 32 4 HOH HOH 32 A HOH 33 4 HOH HOH 33 A HOH 34 4 HOH HOH 34 A HOH 35 4 HOH HOH 35 A HOH 36 4 HOH HOH 36 A HOH 37 4 HOH HOH 37 A HOH 38 4 HOH HOH 38 A HOH 39 4 HOH HOH 39 A HOH 40 4 HOH HOH 40 A HOH 41 4 HOH HOH 41 A HOH 42 4 HOH HOH 42 A HOH 43 4 HOH HOH 43 A HOH 44 4 HOH HOH 44 A HOH 45 4 HOH HOH 45 A HOH 46 4 HOH HOH 46 A HOH 47 4 HOH HOH 47 A HOH 48 4 HOH HOH 48 A HOH 49 4 HOH HOH 49 A HOH 50 4 HOH HOH 50 A HOH 51 4 HOH HOH 51 A HOH 52 4 HOH HOH 52 A HOH 53 4 HOH HOH 53 A HOH 54 4 HOH HOH 54 A HOH 55 4 HOH HOH 55 A HOH 56 4 HOH HOH 56 A HOH 57 4 HOH HOH 57 A HOH 58 4 HOH HOH 58 A HOH 59 4 HOH HOH 59 A HOH 60 4 HOH HOH 60 A HOH 61 4 HOH HOH 61 A HOH 62 4 HOH HOH 62 A HOH 63 4 HOH HOH 63 A HOH 64 4 HOH HOH 64 A HOH 65 4 HOH HOH 65 A HOH 66 4 HOH HOH 66 A HOH 67 4 HOH HOH 67 A HOH 68 4 HOH HOH 68 A HOH 69 4 HOH HOH 69 A HOH 70 4 HOH HOH 70 A HOH 71 4 HOH HOH 71 A HOH 72 4 HOH HOH 72 A HOH 73 4 HOH HOH 73 A HOH 74 4 HOH HOH 74 A HOH 75 4 HOH HOH 75 A HOH 76 4 HOH HOH 76 A HOH 77 4 HOH HOH 77 A HOH 78 4 HOH HOH 78 A HOH 79 4 HOH HOH 79 A HOH 80 4 HOH HOH 80 A HOH 81 4 HOH HOH 81 A HOH 82 4 HOH HOH 82 A HOH 83 4 HOH HOH 83 A HOH 84 4 HOH HOH 84 A HOH 85 4 HOH HOH 85 A HOH 86 4 HOH HOH 86 A HOH 87 4 HOH HOH 87 A HOH 88 4 HOH HOH 88 A HOH 89 4 HOH HOH 89 A HOH 90 4 HOH HOH 90 A HOH 91 4 HOH HOH 91 A HOH 92 4 HOH HOH 92 A C 1 n 1 DC 1 A G 2 n 2 DG 2 A T 3 n 3 DT 3 A A 4 n 4 DA 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A author_defined_assembly 2 dimeric A HOH 9 D O HOH 1_555 A NA 8 C NA NA 1_555 A HOH 10 D O HOH 1_555 162.2 A HOH 9 D O HOH 1_555 A NA 8 C NA NA 1_555 A HOH 11 D O HOH 1_555 97.8 A HOH 10 D O HOH 1_555 A NA 8 C NA NA 1_555 A HOH 11 D O HOH 1_555 65.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_665 -y+1,-x+1,-z+1/2 crystal symmetry operation 27.8600000000 27.8600000000 26.3600000000 1 A A O O HOH HOH 40 84 2.01 1 A A O O HOH HOH 43 89 2.03 1 A A O O HOH HOH 46 89 2.10 1 4.34 0.50 119.90 124.24 A A A C2 N3 C4 DC DC DC 1 1 1 N 1 -3.79 0.40 121.90 118.11 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 3.87 0.60 118.90 122.77 A A A N1 C2 O2 DC DC DC 1 1 1 N 1 -3.19 0.40 104.50 101.31 A A A O4' C4' C3' DG DG DG 2 2 2 N 1 -8.49 0.80 102.40 93.91 A A A C3' C2' C1' DG DG DG 2 2 2 N 1 6.00 0.30 108.30 114.30 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 5.02 0.50 111.50 116.52 A A A C5 C6 N1 DG DG DG 2 2 2 N 1 -3.34 0.50 104.30 100.96 A A A C5 N7 C8 DG DG DG 2 2 2 N 1 3.10 0.50 113.10 116.20 A A A N7 C8 N9 DG DG DG 2 2 2 N 1 -2.94 0.40 106.40 103.46 A A A C8 N9 C4 DG DG DG 2 2 2 N 1 -5.03 0.70 119.90 114.87 A A A N3 C2 N2 DG DG DG 2 2 2 N 1 -5.40 0.60 119.90 114.50 A A A N1 C6 O6 DG DG DG 2 2 2 N 1 8.54 1.20 119.70 128.24 A A A C3' O3' P DG DG DT 2 2 3 Y 1 -11.30 0.80 109.40 98.10 A A A O5' C5' C4' DT DT DT 3 3 3 N 1 -4.57 0.70 108.00 103.43 A A A O4' C1' N1 DT DT DT 3 3 3 N 1 10.63 1.50 119.60 130.23 A A A OP1 P OP2 DA DA DA 4 4 4 N 1 -5.24 0.80 102.40 97.16 A A A C3' C2' C1' DA DA DA 4 4 4 N 1 -4.96 0.70 108.00 103.04 A A A O4' C1' N9 DA DA DA 4 4 4 N 1 -5.96 0.80 109.40 103.44 A A A O5' C5' C4' DC DC DC 5 5 5 N 1 -6.46 0.80 102.40 95.94 A A A C3' C2' C1' DC DC DC 5 5 5 N 1 6.60 0.30 108.30 114.90 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 2.85 0.40 120.30 123.15 A A A C6 N1 C2 DC DC DC 5 5 5 N 1 6.32 0.60 118.90 125.22 A A A N1 C2 O2 DC DC DC 5 5 5 N 1 -4.42 0.70 121.90 117.48 A A A N3 C2 O2 DC DC DC 5 5 5 N 1 -6.92 1.10 118.80 111.88 A A A C2 N1 C1' DC DC DC 5 5 5 N 1 3.02 0.50 128.60 131.62 A A A N3 C4 C5 DG DG DG 6 6 6 N 1 3.98 0.50 111.50 115.48 A A A C5 C6 N1 DG DG DG 6 6 6 N 1 4.65 0.40 110.80 115.45 A A A C4 C5 N7 DG DG DG 6 6 6 N 1 -3.14 0.50 104.30 101.16 A A A C5 N7 C8 DG DG DG 6 6 6 N 1 -4.32 0.40 105.40 101.08 A A A N9 C4 C5 DG DG DG 6 6 6 N 1 -6.31 0.70 119.90 113.59 A A A N3 C2 N2 DG DG DG 6 6 6 N 1 -4.73 0.60 128.60 123.87 A A A C5 C6 O6 DG DG DG 6 6 6 N 1 A A C2' C1' DC DC 1 1 0.064 0.010 1.519 1.583 N 1 A A C2' C1' DG DG 2 2 0.071 0.010 1.519 1.590 N 1 A A C6 N1 DG DG 2 2 -0.068 0.007 1.391 1.323 N 1 A A C2 N2 DG DG 2 2 -0.071 0.010 1.341 1.270 N 1 A A C3' C2' DT DT 3 3 -0.054 0.008 1.516 1.462 N 1 A A C4 C5 DA DA 4 4 -0.042 0.007 1.383 1.341 N 1 A A N9 C4 DA DA 4 4 0.044 0.006 1.374 1.418 N 1 A A P O5' DC DC 5 5 0.077 0.010 1.593 1.670 N 1 A A C5' C4' DC DC 5 5 0.049 0.007 1.512 1.561 N 1 A A C2' C1' DC DC 5 5 0.072 0.010 1.519 1.591 N 1 A A O4' C1' DC DC 5 5 -0.093 0.012 1.418 1.325 N 1 A A N3 C4 DC DC 5 5 0.063 0.007 1.335 1.398 N 1 A A C2 N2 DG DG 6 6 -0.082 0.010 1.341 1.259 N 1 A A OP1 O DC HOH 5 61 1.54 1_555 8_665 1 A A O O HOH HOH 58 61 1.71 1_555 6_455 1 A A O O HOH HOH 46 46 1.73 1_555 7_556 1 A A O O HOH HOH 36 85 1.84 1_555 6_565 1 A A O O HOH HOH 56 87 1.93 1_555 8_765 1 A A O O HOH HOH 57 65 2.03 1_555 6_555 1 A A O O HOH HOH 35 65 2.03 1_555 6_555 1 A A O O HOH HOH 49 71 2.05 1_555 7_556 1 A A O O HOH HOH 57 58 2.18 1_555 4_554 0.1750000 1.180 10.000 5133 1 3.000 TR isotropic TR isotropic 1.180 10.000 84 243 39 120 0 0.034 fix fix 1.200 1D11 13258 9238 2.000 1 refinement NUCLSQ INTERACTIONS BETWEEN AN ANTHRACYCLINE ANTIBIOTIC AND DNA MOLECULAR STRUCTURE OF DAUNOMYCIN COMPLEXED TO D(CPGPTPAPCPG) AT 1.2-ANGSTROMS RESOLUTION 1 N N 2 N N 3 N N 4 N N metalc 2.895 A NA 8 C NA NA 1_555 A HOH 9 D O HOH 1_555 metalc 3.044 A NA 8 C NA NA 1_555 A HOH 10 D O HOH 1_555 metalc 2.720 A NA 8 C NA NA 1_555 A HOH 11 D O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 A DG 6 A N1 DG 6 8_665 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 A DG 6 A O6 DG 6 8_665 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 A DG 6 A N2 DG 6 8_665 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 A DC 5 A N3 DC 5 8_665 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 A DC 5 A O2 DC 5 8_665 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 A DC 5 A N4 DC 5 8_665 hydrog WATSON-CRICK A DT 3 A N3 DT 3 1_555 A DA 4 A N1 DA 4 8_665 hydrog WATSON-CRICK A DT 3 A O4 DT 3 1_555 A DA 4 A N6 DA 4 8_665 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 A DT 3 A N3 DT 3 8_665 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 A DT 3 A O4 DT 3 8_665 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 A DG 2 A N1 DG 2 8_665 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 A DG 2 A O6 DG 2 8_665 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 A DG 2 A N2 DG 2 8_665 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 A DC 1 A N3 DC 1 8_665 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 A DC 1 A O2 DC 1 8_665 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 A DC 1 A N4 DC 1 8_665 DNA RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 1D11 PDB 1 1D11 1 6 1D11 1 6 1D11 A 1 1 6 BINDING SITE FOR RESIDUE DM1 A 7 A DM1 7 Software 13 BINDING SITE FOR RESIDUE NA A 8 A NA 8 Software 5 A DC 1 A DC 1 13 8_665 A DG 2 A DG 2 13 8_665 A DT 3 A DT 3 13 8_665 A DA 4 A DA 4 13 1_555 A DC 5 A DC 5 13 1_555 A DG 6 A DG 6 13 1_555 A NA 8 C NA 13 8_665 A HOH 12 D HOH 13 8_665 A HOH 20 D HOH 13 8_665 A HOH 21 D HOH 13 1_555 A HOH 25 D HOH 13 4_554 A HOH 37 D HOH 13 8_665 A HOH 39 D HOH 13 8_665 A DG 6 A DG 6 5 8_665 A DM1 7 B DM1 5 8_665 A HOH 9 D HOH 5 1_555 A HOH 10 D HOH 5 1_555 A HOH 11 D HOH 5 1_555 92 P 41 21 2