0.035894
0.000000
0.000000
0.000000
0.035894
0.000000
0.000000
0.000000
0.018968
0.00000
0.00000
0.00000
Wang, A.H.-J.
Ughetto, G.
Quigley, G.J.
Rich, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
27.860
27.860
52.720
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C27 H29 N O10
527.520
DAUNOMYCIN
DAUNORUBICIN
non-polymer
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
Y
108
N
C
Y
109
N
C
Y
110
N
C
Y
111
N
C
N
112
N
O
Y
113
N
C
N
114
N
C
N
115
N
O
Y
116
N
C
Y
117
N
C
N
118
N
O
Y
119
N
C
N
120
S
C
N
121
N
O
N
122
N
C
N
123
S
C
N
124
N
O
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
Y
129
N
C
Y
130
N
C
N
131
N
O
Y
132
N
C
N
133
N
C
N
134
N
O
Y
135
N
C
N
136
N
C
N
137
R
C
N
138
N
C
N
139
S
C
N
140
N
N
N
141
S
C
N
142
N
O
N
143
S
C
N
144
N
O
N
145
N
C
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
O
N
176
N
P
N
177
N
O
N
178
N
O
N
179
N
O
N
180
N
C
N
181
R
C
N
182
N
O
N
183
S
C
N
184
N
O
N
185
N
C
N
186
R
C
N
187
N
N
N
188
N
C
N
189
N
O
N
190
N
N
N
191
N
C
N
192
N
O
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
NA
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
Y
113
N
doub
Y
114
N
sing
N
115
N
sing
Y
116
N
sing
N
117
N
sing
Y
118
N
doub
N
119
N
sing
N
120
N
sing
Y
121
N
sing
N
122
N
sing
N
123
N
sing
Y
124
N
doub
N
125
N
doub
N
126
N
sing
Y
127
N
doub
Y
128
N
sing
N
129
N
sing
Y
130
N
sing
N
131
N
sing
N
132
N
sing
Y
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
N
154
N
sing
Y
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
26
1152
1163
10.1021/bi00378a025
3567161
Interactions between an anthracycline antibiotic and DNA: molecular structure of daunomycin complexed to d(CpGpTpApCpG) at 1.2-A resolution.
1987
10.2210/pdb1d11/pdb
pdb_00001d11
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
288.00
1
DIFFRACTOMETER
NICOLET P3X
x-ray
1
1.0
1809.217
DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
1
syn
polymer
527.520
DAUNOMYCIN
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
84
nat
water
no
no
(DC)(DG)(DT)(DA)(DC)(DG)
CGTACG
A
polydeoxyribonucleotide
n
n
n
n
n
n
2.83
56.49
VAPOR DIFFUSION
6.50
pH 6.50, VAPOR DIFFUSION
WATER
1
MPD
1
MGCL2
1
SPERMINE
1
NA CACODYLATE
1
WATER
2
MPD
2
8.171
1
19
A
1
A
6
-2.078
A_DC1:DG6_A
1
0.231
0.192
0.029
-0.159
-16.616
1
19
A
2
A
5
0.689
A_DG2:DC5_A
2
3.325
-0.043
-0.383
-0.045
-3.731
1
20
A
3
A
4
2.144
A_DT3:DA4_A
3
-6.996
-0.205
-0.036
-0.111
3.731
1
20
A
4
A
3
2.144
A_DA4:DT3_A
4
-6.996
0.205
-0.036
-0.111
16.616
1
19
A
5
A
2
0.689
A_DC5:DG2_A
5
3.325
0.043
-0.383
-0.045
-8.171
1
19
A
6
A
1
-2.078
A_DG6:DC1_A
6
0.231
-0.192
0.029
-0.159
6.974
35.036
A
A
1
2
-4.698
A
A
6
5
7.024
-2.824
1.220
1.162
AA_DC1DG2:DC5DG6_AA
1
2.266
-3.771
34.855
2.840
-1.297
3.165
28.557
A
A
2
3
-3.341
A
A
5
4
3.063
-1.644
-1.120
-0.052
AA_DG2DT3:DA4DC5_AA
2
-3.169
6.441
28.337
0.253
1.582
3.246
38.500
A
A
3
4
11.902
A
A
4
3
3.312
7.798
0.000
-0.016
AA_DT3DA4:DT3DA4_AA
3
0.000
0.000
37.731
-1.005
0.000
3.165
28.557
A
A
4
5
-3.341
A
A
3
2
3.063
-1.644
1.120
-0.052
AA_DA4DC5:DG2DT3_AA
4
3.169
-6.441
28.337
0.253
-1.582
6.974
35.036
A
A
5
6
-4.698
A
A
2
1
7.024
-2.824
-1.220
1.162
AA_DC5DG6:DC1DG2_AA
5
-2.266
3.771
34.855
2.840
1.297
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Structure summary
Data collection
Database references
Derived calculations
1
0
1990-10-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2017-02-15
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
BNL
1989-10-20
REL
DM1
DAUNOMYCIN
NA
SODIUM ION
HOH
water
DM1
7
2
DM1
DM1
7
A
NA
8
3
NA
NA
8
A
HOH
9
4
HOH
HOH
9
A
HOH
10
4
HOH
HOH
10
A
HOH
11
4
HOH
HOH
11
A
HOH
12
4
HOH
HOH
12
A
HOH
13
4
HOH
HOH
13
A
HOH
14
4
HOH
HOH
14
A
HOH
15
4
HOH
HOH
15
A
HOH
16
4
HOH
HOH
16
A
HOH
17
4
HOH
HOH
17
A
HOH
18
4
HOH
HOH
18
A
HOH
19
4
HOH
HOH
19
A
HOH
20
4
HOH
HOH
20
A
HOH
21
4
HOH
HOH
21
A
HOH
22
4
HOH
HOH
22
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
26
4
HOH
HOH
26
A
HOH
27
4
HOH
HOH
27
A
HOH
28
4
HOH
HOH
28
A
HOH
29
4
HOH
HOH
29
A
HOH
30
4
HOH
HOH
30
A
HOH
31
4
HOH
HOH
31
A
HOH
32
4
HOH
HOH
32
A
HOH
33
4
HOH
HOH
33
A
HOH
34
4
HOH
HOH
34
A
HOH
35
4
HOH
HOH
35
A
HOH
36
4
HOH
HOH
36
A
HOH
37
4
HOH
HOH
37
A
HOH
38
4
HOH
HOH
38
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
41
4
HOH
HOH
41
A
HOH
42
4
HOH
HOH
42
A
HOH
43
4
HOH
HOH
43
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
HOH
47
4
HOH
HOH
47
A
HOH
48
4
HOH
HOH
48
A
HOH
49
4
HOH
HOH
49
A
HOH
50
4
HOH
HOH
50
A
HOH
51
4
HOH
HOH
51
A
HOH
52
4
HOH
HOH
52
A
HOH
53
4
HOH
HOH
53
A
HOH
54
4
HOH
HOH
54
A
HOH
55
4
HOH
HOH
55
A
HOH
56
4
HOH
HOH
56
A
HOH
57
4
HOH
HOH
57
A
HOH
58
4
HOH
HOH
58
A
HOH
59
4
HOH
HOH
59
A
HOH
60
4
HOH
HOH
60
A
HOH
61
4
HOH
HOH
61
A
HOH
62
4
HOH
HOH
62
A
HOH
63
4
HOH
HOH
63
A
HOH
64
4
HOH
HOH
64
A
HOH
65
4
HOH
HOH
65
A
HOH
66
4
HOH
HOH
66
A
HOH
67
4
HOH
HOH
67
A
HOH
68
4
HOH
HOH
68
A
HOH
69
4
HOH
HOH
69
A
HOH
70
4
HOH
HOH
70
A
HOH
71
4
HOH
HOH
71
A
HOH
72
4
HOH
HOH
72
A
HOH
73
4
HOH
HOH
73
A
HOH
74
4
HOH
HOH
74
A
HOH
75
4
HOH
HOH
75
A
HOH
76
4
HOH
HOH
76
A
HOH
77
4
HOH
HOH
77
A
HOH
78
4
HOH
HOH
78
A
HOH
79
4
HOH
HOH
79
A
HOH
80
4
HOH
HOH
80
A
HOH
81
4
HOH
HOH
81
A
HOH
82
4
HOH
HOH
82
A
HOH
83
4
HOH
HOH
83
A
HOH
84
4
HOH
HOH
84
A
HOH
85
4
HOH
HOH
85
A
HOH
86
4
HOH
HOH
86
A
HOH
87
4
HOH
HOH
87
A
HOH
88
4
HOH
HOH
88
A
HOH
89
4
HOH
HOH
89
A
HOH
90
4
HOH
HOH
90
A
HOH
91
4
HOH
HOH
91
A
HOH
92
4
HOH
HOH
92
A
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
T
3
n
3
DT
3
A
A
4
n
4
DA
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
author_defined_assembly
2
dimeric
A
HOH
9
D
O
HOH
1_555
A
NA
8
C
NA
NA
1_555
A
HOH
10
D
O
HOH
1_555
162.2
A
HOH
9
D
O
HOH
1_555
A
NA
8
C
NA
NA
1_555
A
HOH
11
D
O
HOH
1_555
97.8
A
HOH
10
D
O
HOH
1_555
A
NA
8
C
NA
NA
1_555
A
HOH
11
D
O
HOH
1_555
65.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
27.8600000000
27.8600000000
26.3600000000
1
A
A
O
O
HOH
HOH
40
84
2.01
1
A
A
O
O
HOH
HOH
43
89
2.03
1
A
A
O
O
HOH
HOH
46
89
2.10
1
4.34
0.50
119.90
124.24
A
A
A
C2
N3
C4
DC
DC
DC
1
1
1
N
1
-3.79
0.40
121.90
118.11
A
A
A
N3
C4
C5
DC
DC
DC
1
1
1
N
1
3.87
0.60
118.90
122.77
A
A
A
N1
C2
O2
DC
DC
DC
1
1
1
N
1
-3.19
0.40
104.50
101.31
A
A
A
O4'
C4'
C3'
DG
DG
DG
2
2
2
N
1
-8.49
0.80
102.40
93.91
A
A
A
C3'
C2'
C1'
DG
DG
DG
2
2
2
N
1
6.00
0.30
108.30
114.30
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
5.02
0.50
111.50
116.52
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
-3.34
0.50
104.30
100.96
A
A
A
C5
N7
C8
DG
DG
DG
2
2
2
N
1
3.10
0.50
113.10
116.20
A
A
A
N7
C8
N9
DG
DG
DG
2
2
2
N
1
-2.94
0.40
106.40
103.46
A
A
A
C8
N9
C4
DG
DG
DG
2
2
2
N
1
-5.03
0.70
119.90
114.87
A
A
A
N3
C2
N2
DG
DG
DG
2
2
2
N
1
-5.40
0.60
119.90
114.50
A
A
A
N1
C6
O6
DG
DG
DG
2
2
2
N
1
8.54
1.20
119.70
128.24
A
A
A
C3'
O3'
P
DG
DG
DT
2
2
3
Y
1
-11.30
0.80
109.40
98.10
A
A
A
O5'
C5'
C4'
DT
DT
DT
3
3
3
N
1
-4.57
0.70
108.00
103.43
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
10.63
1.50
119.60
130.23
A
A
A
OP1
P
OP2
DA
DA
DA
4
4
4
N
1
-5.24
0.80
102.40
97.16
A
A
A
C3'
C2'
C1'
DA
DA
DA
4
4
4
N
1
-4.96
0.70
108.00
103.04
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
-5.96
0.80
109.40
103.44
A
A
A
O5'
C5'
C4'
DC
DC
DC
5
5
5
N
1
-6.46
0.80
102.40
95.94
A
A
A
C3'
C2'
C1'
DC
DC
DC
5
5
5
N
1
6.60
0.30
108.30
114.90
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
2.85
0.40
120.30
123.15
A
A
A
C6
N1
C2
DC
DC
DC
5
5
5
N
1
6.32
0.60
118.90
125.22
A
A
A
N1
C2
O2
DC
DC
DC
5
5
5
N
1
-4.42
0.70
121.90
117.48
A
A
A
N3
C2
O2
DC
DC
DC
5
5
5
N
1
-6.92
1.10
118.80
111.88
A
A
A
C2
N1
C1'
DC
DC
DC
5
5
5
N
1
3.02
0.50
128.60
131.62
A
A
A
N3
C4
C5
DG
DG
DG
6
6
6
N
1
3.98
0.50
111.50
115.48
A
A
A
C5
C6
N1
DG
DG
DG
6
6
6
N
1
4.65
0.40
110.80
115.45
A
A
A
C4
C5
N7
DG
DG
DG
6
6
6
N
1
-3.14
0.50
104.30
101.16
A
A
A
C5
N7
C8
DG
DG
DG
6
6
6
N
1
-4.32
0.40
105.40
101.08
A
A
A
N9
C4
C5
DG
DG
DG
6
6
6
N
1
-6.31
0.70
119.90
113.59
A
A
A
N3
C2
N2
DG
DG
DG
6
6
6
N
1
-4.73
0.60
128.60
123.87
A
A
A
C5
C6
O6
DG
DG
DG
6
6
6
N
1
A
A
C2'
C1'
DC
DC
1
1
0.064
0.010
1.519
1.583
N
1
A
A
C2'
C1'
DG
DG
2
2
0.071
0.010
1.519
1.590
N
1
A
A
C6
N1
DG
DG
2
2
-0.068
0.007
1.391
1.323
N
1
A
A
C2
N2
DG
DG
2
2
-0.071
0.010
1.341
1.270
N
1
A
A
C3'
C2'
DT
DT
3
3
-0.054
0.008
1.516
1.462
N
1
A
A
C4
C5
DA
DA
4
4
-0.042
0.007
1.383
1.341
N
1
A
A
N9
C4
DA
DA
4
4
0.044
0.006
1.374
1.418
N
1
A
A
P
O5'
DC
DC
5
5
0.077
0.010
1.593
1.670
N
1
A
A
C5'
C4'
DC
DC
5
5
0.049
0.007
1.512
1.561
N
1
A
A
C2'
C1'
DC
DC
5
5
0.072
0.010
1.519
1.591
N
1
A
A
O4'
C1'
DC
DC
5
5
-0.093
0.012
1.418
1.325
N
1
A
A
N3
C4
DC
DC
5
5
0.063
0.007
1.335
1.398
N
1
A
A
C2
N2
DG
DG
6
6
-0.082
0.010
1.341
1.259
N
1
A
A
OP1
O
DC
HOH
5
61
1.54
1_555
8_665
1
A
A
O
O
HOH
HOH
58
61
1.71
1_555
6_455
1
A
A
O
O
HOH
HOH
46
46
1.73
1_555
7_556
1
A
A
O
O
HOH
HOH
36
85
1.84
1_555
6_565
1
A
A
O
O
HOH
HOH
56
87
1.93
1_555
8_765
1
A
A
O
O
HOH
HOH
57
65
2.03
1_555
6_555
1
A
A
O
O
HOH
HOH
35
65
2.03
1_555
6_555
1
A
A
O
O
HOH
HOH
49
71
2.05
1_555
7_556
1
A
A
O
O
HOH
HOH
57
58
2.18
1_555
4_554
0.1750000
1.180
10.000
5133
1
3.000
TR
isotropic
TR
isotropic
1.180
10.000
84
243
39
120
0
0.034
fix
fix
1.200
1D11
13258
9238
2.000
1
refinement
NUCLSQ
INTERACTIONS BETWEEN AN ANTHRACYCLINE ANTIBIOTIC AND DNA MOLECULAR STRUCTURE OF DAUNOMYCIN COMPLEXED TO D(CPGPTPAPCPG) AT 1.2-ANGSTROMS RESOLUTION
1
N
N
2
N
N
3
N
N
4
N
N
metalc
2.895
A
NA
8
C
NA
NA
1_555
A
HOH
9
D
O
HOH
1_555
metalc
3.044
A
NA
8
C
NA
NA
1_555
A
HOH
10
D
O
HOH
1_555
metalc
2.720
A
NA
8
C
NA
NA
1_555
A
HOH
11
D
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
A
DG
6
A
N1
DG
6
8_665
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
A
DG
6
A
O6
DG
6
8_665
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
A
DG
6
A
N2
DG
6
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
A
DC
5
A
N3
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
A
DC
5
A
O2
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
A
DC
5
A
N4
DC
5
8_665
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
A
DA
4
A
N1
DA
4
8_665
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
A
DA
4
A
N6
DA
4
8_665
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
A
DT
3
A
N3
DT
3
8_665
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
A
DT
3
A
O4
DT
3
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
A
DG
2
A
N1
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
A
DG
2
A
O6
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
A
DG
2
A
N2
DG
2
8_665
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
A
DC
1
A
N3
DC
1
8_665
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
A
DC
1
A
O2
DC
1
8_665
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
A
DC
1
A
N4
DC
1
8_665
DNA
RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA
1D11
PDB
1
1D11
1
6
1D11
1
6
1D11
A
1
1
6
BINDING SITE FOR RESIDUE DM1 A 7
A
DM1
7
Software
13
BINDING SITE FOR RESIDUE NA A 8
A
NA
8
Software
5
A
DC
1
A
DC
1
13
8_665
A
DG
2
A
DG
2
13
8_665
A
DT
3
A
DT
3
13
8_665
A
DA
4
A
DA
4
13
1_555
A
DC
5
A
DC
5
13
1_555
A
DG
6
A
DG
6
13
1_555
A
NA
8
C
NA
13
8_665
A
HOH
12
D
HOH
13
8_665
A
HOH
20
D
HOH
13
8_665
A
HOH
21
D
HOH
13
1_555
A
HOH
25
D
HOH
13
4_554
A
HOH
37
D
HOH
13
8_665
A
HOH
39
D
HOH
13
8_665
A
DG
6
A
DG
6
5
8_665
A
DM1
7
B
DM1
5
8_665
A
HOH
9
D
HOH
5
1_555
A
HOH
10
D
HOH
5
1_555
A
HOH
11
D
HOH
5
1_555
92
P 41 21 2