0.035448
0.000000
0.000000
0.000000
0.035448
0.000000
0.000000
0.000000
0.018801
0.00000
0.00000
0.00000
Frederick, C.A.
Williams, L.D.
Ughetto, G.
Van Der Marel, G.A.
Van Boom, J.H.
Rich, A.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
28.210
28.210
53.190
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C27 H29 N O11
543.519
DOXORUBICIN
ADRIAMYCIN
non-polymer
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C10 H26 N4
202.340
SPERMINE
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
Y
108
N
C
Y
109
N
C
Y
110
N
C
Y
111
N
C
N
112
N
O
Y
113
N
C
N
114
N
C
N
115
N
O
Y
116
N
C
Y
117
N
C
N
118
N
O
Y
119
N
C
N
120
S
C
N
121
N
O
N
122
N
C
N
123
S
C
N
124
N
O
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
O
N
129
N
C
Y
130
N
C
Y
131
N
C
N
132
N
O
Y
133
N
C
N
134
N
C
N
135
N
O
Y
136
N
C
N
137
N
C
N
138
R
C
N
139
N
C
N
140
S
C
N
141
N
N
N
142
S
C
N
143
N
O
N
144
S
C
N
145
N
O
N
146
N
C
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
O
N
177
N
P
N
178
N
O
N
179
N
O
N
180
N
O
N
181
N
C
N
182
R
C
N
183
N
O
N
184
S
C
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
N
N
189
N
C
N
190
N
O
N
191
N
N
N
192
N
C
N
193
N
O
N
194
N
C
N
195
N
C
N
196
N
C
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
NA
N
216
N
N
N
217
N
C
N
218
N
C
N
219
N
C
N
220
N
N
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
N
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
N
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
Y
113
N
doub
Y
114
N
sing
N
115
N
sing
Y
116
N
sing
N
117
N
sing
Y
118
N
doub
N
119
N
sing
N
120
N
sing
Y
121
N
sing
N
122
N
sing
N
123
N
sing
Y
124
N
doub
N
125
N
doub
N
126
N
sing
Y
127
N
doub
Y
128
N
sing
N
129
N
sing
Y
130
N
sing
N
131
N
sing
N
132
N
sing
Y
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
Y
154
N
sing
N
155
N
sing
Y
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
29
2538
2549
10.1021/bi00462a016
2334681
Structural comparison of anticancer drug-DNA complexes: adriamycin and daunomycin.
1990
10.2210/pdb1d12/pdb
pdb_00001d12
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
288.00
1
DIFFRACTOMETER
x-ray
1
1.0
1809.217
DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
1
syn
polymer
543.519
DOXORUBICIN
1
syn
non-polymer
202.340
SPERMINE
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
56
nat
water
no
no
(DC)(DG)(DA)(DT)(DC)(DG)
CGATCG
A
polydeoxyribonucleotide
n
n
n
n
n
n
2.92
57.94
VAPOR DIFFUSION
VAPOR DIFFUSION
ROOM TEMPERATURE
WATER
1
MPD
1
NA CACODYLATE
1
MGCL2
1
SPERMINE
1
9.246
1
19
A
1
A
6
-2.947
A_DC1:DG6_A
1
1.248
0.171
-0.033
-0.195
-15.310
1
19
A
2
A
5
-1.956
A_DG2:DC5_A
2
0.966
-0.135
-0.134
-0.244
-6.595
1
20
A
3
A
4
0.079
A_DA3:DT4_A
3
-3.751
-0.083
-0.029
-0.004
6.595
1
20
A
4
A
3
0.079
A_DT4:DA3_A
4
-3.751
0.083
-0.029
-0.004
15.310
1
19
A
5
A
2
-1.956
A_DC5:DG2_A
5
0.966
0.135
-0.134
-0.244
-9.246
1
19
A
6
A
1
-2.947
A_DG6:DC1_A
6
1.248
-0.171
-0.033
-0.195
7.006
36.428
A
A
1
2
-4.382
A
A
6
5
7.086
-2.737
1.257
0.967
AA_DC1DG2:DC5DG6_AA
1
0.263
-0.421
36.328
2.366
-1.931
3.278
31.684
A
A
2
3
-1.141
A
A
5
4
3.198
-0.622
-1.235
0.515
AA_DG2DA3:DT4DC5_AA
2
-2.653
4.865
31.569
1.057
1.778
3.179
31.223
A
A
3
4
9.150
A
A
4
3
3.296
4.905
0.000
-0.508
AA_DA3DT4:DA3DT4_AA
3
0.000
0.000
30.845
-1.872
0.000
3.278
31.684
A
A
4
5
-1.141
A
A
3
2
3.198
-0.622
1.235
0.515
AA_DT4DC5:DG2DA3_AA
4
2.653
-4.865
31.569
1.057
-1.778
7.006
36.428
A
A
5
6
-4.382
A
A
2
1
7.086
-2.737
-1.257
0.967
AA_DC5DG6:DC1DG2_AA
5
-0.263
0.421
36.328
2.366
1.931
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1990-10-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
BNL
1989-10-20
REL
DM2
DOXORUBICIN
SPM
SPERMINE
NA
SODIUM ION
HOH
water
DM2
7
2
DM2
DM2
7
A
SPM
8
3
SPM
SPM
8
A
NA
9
4
NA
NA
9
A
HOH
10
5
HOH
HOH
10
A
HOH
11
5
HOH
HOH
11
A
HOH
12
5
HOH
HOH
12
A
HOH
13
5
HOH
HOH
13
A
HOH
14
5
HOH
HOH
14
A
HOH
15
5
HOH
HOH
15
A
HOH
16
5
HOH
HOH
16
A
HOH
17
5
HOH
HOH
17
A
HOH
18
5
HOH
HOH
18
A
HOH
19
5
HOH
HOH
19
A
HOH
20
5
HOH
HOH
20
A
HOH
21
5
HOH
HOH
21
A
HOH
22
5
HOH
HOH
22
A
HOH
23
5
HOH
HOH
23
A
HOH
24
5
HOH
HOH
24
A
HOH
25
5
HOH
HOH
25
A
HOH
26
5
HOH
HOH
26
A
HOH
27
5
HOH
HOH
27
A
HOH
28
5
HOH
HOH
28
A
HOH
29
5
HOH
HOH
29
A
HOH
30
5
HOH
HOH
30
A
HOH
31
5
HOH
HOH
31
A
HOH
32
5
HOH
HOH
32
A
HOH
33
5
HOH
HOH
33
A
HOH
34
5
HOH
HOH
34
A
HOH
35
5
HOH
HOH
35
A
HOH
36
5
HOH
HOH
36
A
HOH
37
5
HOH
HOH
37
A
HOH
38
5
HOH
HOH
38
A
HOH
39
5
HOH
HOH
39
A
HOH
40
5
HOH
HOH
40
A
HOH
41
5
HOH
HOH
41
A
HOH
42
5
HOH
HOH
42
A
HOH
43
5
HOH
HOH
43
A
HOH
44
5
HOH
HOH
44
A
HOH
45
5
HOH
HOH
45
A
HOH
46
5
HOH
HOH
46
A
HOH
47
5
HOH
HOH
47
A
HOH
48
5
HOH
HOH
48
A
HOH
49
5
HOH
HOH
49
A
HOH
50
5
HOH
HOH
50
A
HOH
51
5
HOH
HOH
51
A
HOH
52
5
HOH
HOH
52
A
HOH
53
5
HOH
HOH
53
A
HOH
54
5
HOH
HOH
54
A
HOH
55
5
HOH
HOH
55
A
HOH
56
5
HOH
HOH
56
A
HOH
57
5
HOH
HOH
57
A
HOH
58
5
HOH
HOH
58
A
HOH
59
5
HOH
HOH
59
A
HOH
60
5
HOH
HOH
60
A
HOH
61
5
HOH
HOH
61
A
HOH
62
5
HOH
HOH
62
A
HOH
63
5
HOH
HOH
63
A
HOH
64
5
HOH
HOH
64
A
HOH
65
5
HOH
HOH
65
A
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
A
3
n
3
DA
3
A
T
4
n
4
DT
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
author_defined_assembly
2
dimeric
A
DG
6
A
N7
DG
6
1_555
A
NA
9
D
NA
NA
1_555
A
HOH
11
E
O
HOH
1_555
93.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
28.2100000000
28.2100000000
26.5950000000
1
6.72
0.70
110.30
117.02
A
A
A
C1'
O4'
C4'
DC
DC
DC
1
1
1
N
1
3.84
0.30
108.30
112.14
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
-4.35
0.70
119.20
114.85
A
A
A
N1
C2
N3
DC
DC
DC
1
1
1
N
1
8.58
0.50
119.90
128.48
A
A
A
C2
N3
C4
DC
DC
DC
1
1
1
N
1
-8.05
0.40
121.90
113.85
A
A
A
N3
C4
C5
DC
DC
DC
1
1
1
N
1
3.31
0.50
121.00
124.31
A
A
A
C5
C6
N1
DC
DC
DC
1
1
1
N
1
4.18
0.60
118.90
123.08
A
A
A
N1
C2
O2
DC
DC
DC
1
1
1
N
1
5.02
0.70
120.20
125.22
A
A
A
C5
C4
N4
DC
DC
DC
1
1
1
N
1
13.22
1.50
119.60
132.82
A
A
A
OP1
P
OP2
DG
DG
DG
2
2
2
N
1
-7.78
0.80
109.40
101.62
A
A
A
O5'
C5'
C4'
DG
DG
DG
2
2
2
N
1
-5.35
0.80
102.40
97.05
A
A
A
C3'
C2'
C1'
DG
DG
DG
2
2
2
N
1
6.28
0.30
108.30
114.58
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-7.27
0.60
125.10
117.83
A
A
A
C6
N1
C2
DG
DG
DG
2
2
2
N
1
7.59
0.60
123.90
131.49
A
A
A
N1
C2
N3
DG
DG
DG
2
2
2
N
1
-3.30
0.50
111.90
108.60
A
A
A
C2
N3
C4
DG
DG
DG
2
2
2
N
1
5.66
0.50
111.50
117.16
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
-7.79
0.70
119.90
112.11
A
A
A
N3
C2
N2
DG
DG
DG
2
2
2
N
1
-5.04
0.60
119.90
114.86
A
A
A
N1
C6
O6
DG
DG
DG
2
2
2
N
1
11.73
1.20
119.70
131.43
A
A
A
C3'
O3'
P
DG
DG
DA
2
2
3
Y
1
13.15
1.90
104.00
117.15
A
A
A
O3'
P
O5'
DG
DA
DA
2
3
3
Y
1
-9.29
0.90
105.70
96.41
A
A
A
O5'
P
OP1
DA
DA
DA
3
3
3
N
1
7.55
1.20
115.70
123.25
A
A
A
C5'
C4'
C3'
DA
DA
DA
3
3
3
N
1
1.99
0.30
108.30
110.29
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
1
-5.58
0.80
109.40
103.82
A
A
A
O5'
C5'
C4'
DT
DT
DT
4
4
4
N
1
-7.39
0.70
108.00
100.61
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
7.41
0.60
119.00
126.41
A
A
A
C4
C5
C7
DT
DT
DT
4
4
4
N
1
-7.35
0.60
122.90
115.55
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
1
-10.26
1.60
120.90
110.64
A
A
A
P
O5'
C5'
DC
DC
DC
5
5
5
N
1
15.07
0.30
108.30
123.37
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
4.24
0.50
119.90
124.14
A
A
A
C2
N3
C4
DC
DC
DC
5
5
5
N
1
-4.21
0.40
121.90
117.69
A
A
A
N3
C4
C5
DC
DC
DC
5
5
5
N
1
4.28
0.50
121.00
125.28
A
A
A
C5
C6
N1
DC
DC
DC
5
5
5
N
1
3.64
0.60
118.90
122.54
A
A
A
N1
C2
O2
DC
DC
DC
5
5
5
N
1
8.03
1.20
120.80
128.83
A
A
A
C6
N1
C1'
DC
DC
DC
5
5
5
N
1
-7.77
1.10
118.80
111.03
A
A
A
C2
N1
C1'
DC
DC
DC
5
5
5
N
1
-6.60
0.90
105.70
99.10
A
A
A
O5'
P
OP1
DG
DG
DG
6
6
6
N
1
-6.15
0.80
109.40
103.25
A
A
A
O5'
C5'
C4'
DG
DG
DG
6
6
6
N
1
-5.88
0.70
108.00
102.12
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
-6.65
0.60
125.10
118.45
A
A
A
C6
N1
C2
DG
DG
DG
6
6
6
N
1
4.61
0.60
123.90
128.51
A
A
A
N1
C2
N3
DG
DG
DG
6
6
6
N
1
5.53
0.50
111.50
117.03
A
A
A
C5
C6
N1
DG
DG
DG
6
6
6
N
1
-8.60
0.70
119.90
111.30
A
A
A
N3
C2
N2
DG
DG
DG
6
6
6
N
1
-4.20
0.60
119.90
115.70
A
A
A
N1
C6
O6
DG
DG
DG
6
6
6
N
1
A
A
C2'
C1'
DC
DC
1
1
0.082
0.010
1.519
1.601
N
1
A
A
O3'
C3'
DC
DC
1
1
-0.055
0.006
1.419
1.364
N
1
A
A
P
OP2
DG
DG
2
2
-0.117
0.017
1.485
1.368
N
1
A
A
C5'
C4'
DG
DG
2
2
0.060
0.007
1.512
1.572
N
1
A
A
C1'
N9
DG
DG
2
2
-0.094
0.014
1.468
1.374
N
1
A
A
C6
N1
DG
DG
2
2
-0.060
0.007
1.391
1.331
N
1
A
A
C8
N9
DG
DG
2
2
-0.065
0.007
1.374
1.309
N
1
A
A
C2
N2
DG
DG
2
2
-0.082
0.010
1.341
1.259
N
1
A
A
C5'
C4'
DT
DT
4
4
0.051
0.007
1.512
1.563
N
1
A
A
O4'
C1'
DT
DT
4
4
0.093
0.011
1.420
1.513
N
1
A
A
P
O5'
DC
DC
5
5
0.087
0.010
1.593
1.680
N
1
A
A
C2'
C1'
DC
DC
5
5
0.063
0.010
1.519
1.582
N
1
A
A
O4'
C1'
DC
DC
5
5
-0.115
0.012
1.418
1.303
N
1
A
A
O3'
C3'
DC
DC
5
5
-0.052
0.006
1.419
1.367
N
1
A
A
C5'
C4'
DG
DG
6
6
0.075
0.007
1.512
1.587
N
1
A
A
C6
N1
DG
DG
6
6
-0.048
0.007
1.391
1.343
N
1
A
A
C2
N2
DG
DG
6
6
-0.130
0.010
1.341
1.211
N
1
A
A
O
O
HOH
HOH
45
46
2.11
1_555
2_664
0.1770000
1.700
10.000
1706
1
2.000
TR
isotropic
TR
isotropic
1.700
10.000
56
230
54
120
0
fix
fix
1.700
1D12
2.000
1
refinement
NUCLSQ
STRUCTURAL COMPARISON OF ANTICANCER DRUG-DNA COMPLEXES. ADRIAMYCIN AND DAUNOMYCIN
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
metalc
2.781
A
DG
6
A
N7
DG
6
1_555
A
NA
9
D
NA
NA
1_555
metalc
2.822
A
NA
9
D
NA
NA
1_555
A
HOH
11
E
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
A
DG
6
A
N1
DG
6
8_665
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
A
DG
6
A
O6
DG
6
8_665
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
A
DG
6
A
N2
DG
6
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
A
DC
5
A
N3
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
A
DC
5
A
O2
DC
5
8_665
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
A
DC
5
A
N4
DC
5
8_665
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
A
DT
4
A
N3
DT
4
8_665
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
A
DT
4
A
O4
DT
4
8_665
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
A
DA
3
A
N1
DA
3
8_665
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
A
DA
3
A
N6
DA
3
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
A
DG
2
A
N1
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
A
DG
2
A
O6
DG
2
8_665
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
A
DG
2
A
N2
DG
2
8_665
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
A
DC
1
A
N3
DC
1
8_665
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
A
DC
1
A
O2
DC
1
8_665
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
A
DC
1
A
N4
DC
1
8_665
DNA
RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA
1D12
PDB
1
1D12
1
6
1D12
1
6
1D12
A
1
1
6
BINDING SITE FOR RESIDUE DM2 A 7
A
DM2
7
Software
12
BINDING SITE FOR RESIDUE SPM A 8
A
SPM
8
Software
12
BINDING SITE FOR RESIDUE NA A 9
A
NA
9
Software
5
A
DC
1
A
DC
1
12
8_665
A
DG
2
A
DG
2
12
8_665
A
DA
3
A
DA
3
12
8_665
A
DT
4
A
DT
4
12
1_555
A
DC
5
A
DC
5
12
1_555
A
DG
6
A
DG
6
12
1_555
A
SPM
8
C
SPM
12
1_555
A
NA
9
D
NA
12
1_555
A
HOH
22
E
HOH
12
1_555
A
HOH
26
E
HOH
12
1_555
A
HOH
41
E
HOH
12
1_555
A
HOH
43
E
HOH
12
1_555
A
DG
2
A
DG
2
12
8_665
A
DT
4
A
DT
4
12
1_555
A
DC
5
A
DC
5
12
1_555
A
DM2
7
B
DM2
12
1_555
A
HOH
14
E
HOH
12
1_555
A
HOH
15
E
HOH
12
1_555
A
HOH
17
E
HOH
12
5_655
A
HOH
27
E
HOH
12
8_665
A
HOH
32
E
HOH
12
1_555
A
HOH
39
E
HOH
12
5_555
A
HOH
48
E
HOH
12
1_555
A
HOH
61
E
HOH
12
5_655
A
DG
6
A
DG
6
5
1_555
A
DM2
7
B
DM2
5
1_555
A
HOH
10
E
HOH
5
1_555
A
HOH
11
E
HOH
5
1_555
A
HOH
12
E
HOH
5
1_555
92
P 41 21 2