0.035448 0.000000 0.000000 0.000000 0.035448 0.000000 0.000000 0.000000 0.018801 0.00000 0.00000 0.00000 Frederick, C.A. Williams, L.D. Ughetto, G. Van Der Marel, G.A. Van Boom, J.H. Rich, A. Wang, A.H.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 28.210 28.210 53.190 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C27 H29 N O11 543.519 DOXORUBICIN ADRIAMYCIN non-polymer C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Na 1 22.990 SODIUM ION non-polymer C10 H26 N4 202.340 SPERMINE non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H Y 108 N C Y 109 N C Y 110 N C Y 111 N C N 112 N O Y 113 N C N 114 N C N 115 N O Y 116 N C Y 117 N C N 118 N O Y 119 N C N 120 S C N 121 N O N 122 N C N 123 S C N 124 N O N 125 N C N 126 N O N 127 N C N 128 N O N 129 N C Y 130 N C Y 131 N C N 132 N O Y 133 N C N 134 N C N 135 N O Y 136 N C N 137 N C N 138 R C N 139 N C N 140 S C N 141 N N N 142 S C N 143 N O N 144 S C N 145 N O N 146 N C N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N O N 177 N P N 178 N O N 179 N O N 180 N O N 181 N C N 182 R C N 183 N O N 184 S C N 185 N O N 186 N C N 187 R C N 188 N N N 189 N C N 190 N O N 191 N N N 192 N C N 193 N O N 194 N C N 195 N C N 196 N C N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N O N 213 N H N 214 N H N 215 N NA N 216 N N N 217 N C N 218 N C N 219 N C N 220 N N N 221 N C N 222 N C N 223 N C N 224 N C N 225 N N N 226 N C N 227 N C N 228 N C N 229 N N N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing Y 113 N doub Y 114 N sing N 115 N sing Y 116 N sing N 117 N sing Y 118 N doub N 119 N sing N 120 N sing Y 121 N sing N 122 N sing N 123 N sing Y 124 N doub N 125 N doub N 126 N sing Y 127 N doub Y 128 N sing N 129 N sing Y 130 N sing N 131 N sing N 132 N sing Y 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing Y 154 N sing N 155 N sing Y 156 N doub N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing US Biochemistry BICHAW 0033 0006-2960 29 2538 2549 10.1021/bi00462a016 2334681 Structural comparison of anticancer drug-DNA complexes: adriamycin and daunomycin. 1990 10.2210/pdb1d12/pdb pdb_00001d12 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 288.00 1 DIFFRACTOMETER x-ray 1 1.0 1809.217 DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') 1 syn polymer 543.519 DOXORUBICIN 1 syn non-polymer 202.340 SPERMINE 1 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 56 nat water no no (DC)(DG)(DA)(DT)(DC)(DG) CGATCG A polydeoxyribonucleotide n n n n n n 2.92 57.94 VAPOR DIFFUSION VAPOR DIFFUSION ROOM TEMPERATURE WATER 1 MPD 1 NA CACODYLATE 1 MGCL2 1 SPERMINE 1 9.246 1 19 A 1 A 6 -2.947 A_DC1:DG6_A 1 1.248 0.171 -0.033 -0.195 -15.310 1 19 A 2 A 5 -1.956 A_DG2:DC5_A 2 0.966 -0.135 -0.134 -0.244 -6.595 1 20 A 3 A 4 0.079 A_DA3:DT4_A 3 -3.751 -0.083 -0.029 -0.004 6.595 1 20 A 4 A 3 0.079 A_DT4:DA3_A 4 -3.751 0.083 -0.029 -0.004 15.310 1 19 A 5 A 2 -1.956 A_DC5:DG2_A 5 0.966 0.135 -0.134 -0.244 -9.246 1 19 A 6 A 1 -2.947 A_DG6:DC1_A 6 1.248 -0.171 -0.033 -0.195 7.006 36.428 A A 1 2 -4.382 A A 6 5 7.086 -2.737 1.257 0.967 AA_DC1DG2:DC5DG6_AA 1 0.263 -0.421 36.328 2.366 -1.931 3.278 31.684 A A 2 3 -1.141 A A 5 4 3.198 -0.622 -1.235 0.515 AA_DG2DA3:DT4DC5_AA 2 -2.653 4.865 31.569 1.057 1.778 3.179 31.223 A A 3 4 9.150 A A 4 3 3.296 4.905 0.000 -0.508 AA_DA3DT4:DA3DT4_AA 3 0.000 0.000 30.845 -1.872 0.000 3.278 31.684 A A 4 5 -1.141 A A 3 2 3.198 -0.622 1.235 0.515 AA_DT4DC5:DG2DA3_AA 4 2.653 -4.865 31.569 1.057 -1.778 7.006 36.428 A A 5 6 -4.382 A A 2 1 7.086 -2.737 -1.257 0.967 AA_DC5DG6:DC1DG2_AA 5 -0.263 0.421 36.328 2.366 1.931 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1990-10-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y BNL 1989-10-20 REL DM2 DOXORUBICIN SPM SPERMINE NA SODIUM ION HOH water DM2 7 2 DM2 DM2 7 A SPM 8 3 SPM SPM 8 A NA 9 4 NA NA 9 A HOH 10 5 HOH HOH 10 A HOH 11 5 HOH HOH 11 A HOH 12 5 HOH HOH 12 A HOH 13 5 HOH HOH 13 A HOH 14 5 HOH HOH 14 A HOH 15 5 HOH HOH 15 A HOH 16 5 HOH HOH 16 A HOH 17 5 HOH HOH 17 A HOH 18 5 HOH HOH 18 A HOH 19 5 HOH HOH 19 A HOH 20 5 HOH HOH 20 A HOH 21 5 HOH HOH 21 A HOH 22 5 HOH HOH 22 A HOH 23 5 HOH HOH 23 A HOH 24 5 HOH HOH 24 A HOH 25 5 HOH HOH 25 A HOH 26 5 HOH HOH 26 A HOH 27 5 HOH HOH 27 A HOH 28 5 HOH HOH 28 A HOH 29 5 HOH HOH 29 A HOH 30 5 HOH HOH 30 A HOH 31 5 HOH HOH 31 A HOH 32 5 HOH HOH 32 A HOH 33 5 HOH HOH 33 A HOH 34 5 HOH HOH 34 A HOH 35 5 HOH HOH 35 A HOH 36 5 HOH HOH 36 A HOH 37 5 HOH HOH 37 A HOH 38 5 HOH HOH 38 A HOH 39 5 HOH HOH 39 A HOH 40 5 HOH HOH 40 A HOH 41 5 HOH HOH 41 A HOH 42 5 HOH HOH 42 A HOH 43 5 HOH HOH 43 A HOH 44 5 HOH HOH 44 A HOH 45 5 HOH HOH 45 A HOH 46 5 HOH HOH 46 A HOH 47 5 HOH HOH 47 A HOH 48 5 HOH HOH 48 A HOH 49 5 HOH HOH 49 A HOH 50 5 HOH HOH 50 A HOH 51 5 HOH HOH 51 A HOH 52 5 HOH HOH 52 A HOH 53 5 HOH HOH 53 A HOH 54 5 HOH HOH 54 A HOH 55 5 HOH HOH 55 A HOH 56 5 HOH HOH 56 A HOH 57 5 HOH HOH 57 A HOH 58 5 HOH HOH 58 A HOH 59 5 HOH HOH 59 A HOH 60 5 HOH HOH 60 A HOH 61 5 HOH HOH 61 A HOH 62 5 HOH HOH 62 A HOH 63 5 HOH HOH 63 A HOH 64 5 HOH HOH 64 A HOH 65 5 HOH HOH 65 A C 1 n 1 DC 1 A G 2 n 2 DG 2 A A 3 n 3 DA 3 A T 4 n 4 DT 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A author_defined_assembly 2 dimeric A DG 6 A N7 DG 6 1_555 A NA 9 D NA NA 1_555 A HOH 11 E O HOH 1_555 93.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_665 -y+1,-x+1,-z+1/2 crystal symmetry operation 28.2100000000 28.2100000000 26.5950000000 1 6.72 0.70 110.30 117.02 A A A C1' O4' C4' DC DC DC 1 1 1 N 1 3.84 0.30 108.30 112.14 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 -4.35 0.70 119.20 114.85 A A A N1 C2 N3 DC DC DC 1 1 1 N 1 8.58 0.50 119.90 128.48 A A A C2 N3 C4 DC DC DC 1 1 1 N 1 -8.05 0.40 121.90 113.85 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 3.31 0.50 121.00 124.31 A A A C5 C6 N1 DC DC DC 1 1 1 N 1 4.18 0.60 118.90 123.08 A A A N1 C2 O2 DC DC DC 1 1 1 N 1 5.02 0.70 120.20 125.22 A A A C5 C4 N4 DC DC DC 1 1 1 N 1 13.22 1.50 119.60 132.82 A A A OP1 P OP2 DG DG DG 2 2 2 N 1 -7.78 0.80 109.40 101.62 A A A O5' C5' C4' DG DG DG 2 2 2 N 1 -5.35 0.80 102.40 97.05 A A A C3' C2' C1' DG DG DG 2 2 2 N 1 6.28 0.30 108.30 114.58 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 -7.27 0.60 125.10 117.83 A A A C6 N1 C2 DG DG DG 2 2 2 N 1 7.59 0.60 123.90 131.49 A A A N1 C2 N3 DG DG DG 2 2 2 N 1 -3.30 0.50 111.90 108.60 A A A C2 N3 C4 DG DG DG 2 2 2 N 1 5.66 0.50 111.50 117.16 A A A C5 C6 N1 DG DG DG 2 2 2 N 1 -7.79 0.70 119.90 112.11 A A A N3 C2 N2 DG DG DG 2 2 2 N 1 -5.04 0.60 119.90 114.86 A A A N1 C6 O6 DG DG DG 2 2 2 N 1 11.73 1.20 119.70 131.43 A A A C3' O3' P DG DG DA 2 2 3 Y 1 13.15 1.90 104.00 117.15 A A A O3' P O5' DG DA DA 2 3 3 Y 1 -9.29 0.90 105.70 96.41 A A A O5' P OP1 DA DA DA 3 3 3 N 1 7.55 1.20 115.70 123.25 A A A C5' C4' C3' DA DA DA 3 3 3 N 1 1.99 0.30 108.30 110.29 A A A O4' C1' N9 DA DA DA 3 3 3 N 1 -5.58 0.80 109.40 103.82 A A A O5' C5' C4' DT DT DT 4 4 4 N 1 -7.39 0.70 108.00 100.61 A A A O4' C1' N1 DT DT DT 4 4 4 N 1 7.41 0.60 119.00 126.41 A A A C4 C5 C7 DT DT DT 4 4 4 N 1 -7.35 0.60 122.90 115.55 A A A C6 C5 C7 DT DT DT 4 4 4 N 1 -10.26 1.60 120.90 110.64 A A A P O5' C5' DC DC DC 5 5 5 N 1 15.07 0.30 108.30 123.37 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 4.24 0.50 119.90 124.14 A A A C2 N3 C4 DC DC DC 5 5 5 N 1 -4.21 0.40 121.90 117.69 A A A N3 C4 C5 DC DC DC 5 5 5 N 1 4.28 0.50 121.00 125.28 A A A C5 C6 N1 DC DC DC 5 5 5 N 1 3.64 0.60 118.90 122.54 A A A N1 C2 O2 DC DC DC 5 5 5 N 1 8.03 1.20 120.80 128.83 A A A C6 N1 C1' DC DC DC 5 5 5 N 1 -7.77 1.10 118.80 111.03 A A A C2 N1 C1' DC DC DC 5 5 5 N 1 -6.60 0.90 105.70 99.10 A A A O5' P OP1 DG DG DG 6 6 6 N 1 -6.15 0.80 109.40 103.25 A A A O5' C5' C4' DG DG DG 6 6 6 N 1 -5.88 0.70 108.00 102.12 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 -6.65 0.60 125.10 118.45 A A A C6 N1 C2 DG DG DG 6 6 6 N 1 4.61 0.60 123.90 128.51 A A A N1 C2 N3 DG DG DG 6 6 6 N 1 5.53 0.50 111.50 117.03 A A A C5 C6 N1 DG DG DG 6 6 6 N 1 -8.60 0.70 119.90 111.30 A A A N3 C2 N2 DG DG DG 6 6 6 N 1 -4.20 0.60 119.90 115.70 A A A N1 C6 O6 DG DG DG 6 6 6 N 1 A A C2' C1' DC DC 1 1 0.082 0.010 1.519 1.601 N 1 A A O3' C3' DC DC 1 1 -0.055 0.006 1.419 1.364 N 1 A A P OP2 DG DG 2 2 -0.117 0.017 1.485 1.368 N 1 A A C5' C4' DG DG 2 2 0.060 0.007 1.512 1.572 N 1 A A C1' N9 DG DG 2 2 -0.094 0.014 1.468 1.374 N 1 A A C6 N1 DG DG 2 2 -0.060 0.007 1.391 1.331 N 1 A A C8 N9 DG DG 2 2 -0.065 0.007 1.374 1.309 N 1 A A C2 N2 DG DG 2 2 -0.082 0.010 1.341 1.259 N 1 A A C5' C4' DT DT 4 4 0.051 0.007 1.512 1.563 N 1 A A O4' C1' DT DT 4 4 0.093 0.011 1.420 1.513 N 1 A A P O5' DC DC 5 5 0.087 0.010 1.593 1.680 N 1 A A C2' C1' DC DC 5 5 0.063 0.010 1.519 1.582 N 1 A A O4' C1' DC DC 5 5 -0.115 0.012 1.418 1.303 N 1 A A O3' C3' DC DC 5 5 -0.052 0.006 1.419 1.367 N 1 A A C5' C4' DG DG 6 6 0.075 0.007 1.512 1.587 N 1 A A C6 N1 DG DG 6 6 -0.048 0.007 1.391 1.343 N 1 A A C2 N2 DG DG 6 6 -0.130 0.010 1.341 1.211 N 1 A A O O HOH HOH 45 46 2.11 1_555 2_664 0.1770000 1.700 10.000 1706 1 2.000 TR isotropic TR isotropic 1.700 10.000 56 230 54 120 0 fix fix 1.700 1D12 2.000 1 refinement NUCLSQ STRUCTURAL COMPARISON OF ANTICANCER DRUG-DNA COMPLEXES. ADRIAMYCIN AND DAUNOMYCIN 1 N N 2 N N 3 N N 4 N N 5 N N metalc 2.781 A DG 6 A N7 DG 6 1_555 A NA 9 D NA NA 1_555 metalc 2.822 A NA 9 D NA NA 1_555 A HOH 11 E O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 A DG 6 A N1 DG 6 8_665 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 A DG 6 A O6 DG 6 8_665 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 A DG 6 A N2 DG 6 8_665 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 A DC 5 A N3 DC 5 8_665 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 A DC 5 A O2 DC 5 8_665 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 A DC 5 A N4 DC 5 8_665 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 A DT 4 A N3 DT 4 8_665 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 A DT 4 A O4 DT 4 8_665 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 A DA 3 A N1 DA 3 8_665 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 A DA 3 A N6 DA 3 8_665 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 A DG 2 A N1 DG 2 8_665 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 A DG 2 A O6 DG 2 8_665 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 A DG 2 A N2 DG 2 8_665 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 A DC 1 A N3 DC 1 8_665 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 A DC 1 A O2 DC 1 8_665 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 A DC 1 A N4 DC 1 8_665 DNA RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 1D12 PDB 1 1D12 1 6 1D12 1 6 1D12 A 1 1 6 BINDING SITE FOR RESIDUE DM2 A 7 A DM2 7 Software 12 BINDING SITE FOR RESIDUE SPM A 8 A SPM 8 Software 12 BINDING SITE FOR RESIDUE NA A 9 A NA 9 Software 5 A DC 1 A DC 1 12 8_665 A DG 2 A DG 2 12 8_665 A DA 3 A DA 3 12 8_665 A DT 4 A DT 4 12 1_555 A DC 5 A DC 5 12 1_555 A DG 6 A DG 6 12 1_555 A SPM 8 C SPM 12 1_555 A NA 9 D NA 12 1_555 A HOH 22 E HOH 12 1_555 A HOH 26 E HOH 12 1_555 A HOH 41 E HOH 12 1_555 A HOH 43 E HOH 12 1_555 A DG 2 A DG 2 12 8_665 A DT 4 A DT 4 12 1_555 A DC 5 A DC 5 12 1_555 A DM2 7 B DM2 12 1_555 A HOH 14 E HOH 12 1_555 A HOH 15 E HOH 12 1_555 A HOH 17 E HOH 12 5_655 A HOH 27 E HOH 12 8_665 A HOH 32 E HOH 12 1_555 A HOH 39 E HOH 12 5_555 A HOH 48 E HOH 12 1_555 A HOH 61 E HOH 12 5_655 A DG 6 A DG 6 5 1_555 A DM2 7 B DM2 5 1_555 A HOH 10 E HOH 5 1_555 A HOH 11 E HOH 5 1_555 A HOH 12 E HOH 5 1_555 92 P 41 21 2