0.056402
0.000000
0.007937
0.000000
0.052274
0.000000
0.000000
0.000000
0.038310
0.00000
0.00000
0.00000
Williams, L.D.
Egli, M.
Ughetto, G.
Van Der Marel, G.A.
Van Boom, J.H.
Quigley, G.J.
Wang, A.H.-J.
Rich, A.
Frederick, C.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
98.01
90.00
17.730
19.130
26.360
C10 H14 N5 O5 P S
347.287
n
2-DEOXY-ADENOSINE -5'-THIO-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C27 H29 N O9
511.520
6-DEOXYDAUNOMYCIN
non-polymer
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
P
N
2
N
O
N
3
N
S
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
Y
108
N
C
Y
109
N
C
Y
110
N
C
Y
111
N
C
N
112
N
O
Y
113
N
C
N
114
N
C
N
115
N
O
Y
116
N
C
Y
117
N
C
N
118
N
O
Y
119
N
C
N
120
S
C
N
121
N
O
N
122
N
C
N
123
S
C
N
124
N
O
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
Y
129
N
C
Y
130
N
C
Y
131
N
C
N
132
N
C
N
133
N
O
Y
134
N
C
N
135
N
C
N
136
R
C
N
137
N
C
N
138
S
C
N
139
N
N
N
140
S
C
N
141
N
O
N
142
S
C
N
143
N
O
N
144
N
C
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
O
N
175
N
P
N
176
N
O
N
177
N
O
N
178
N
O
N
179
N
C
N
180
R
C
N
181
N
O
N
182
S
C
N
183
N
O
N
184
N
C
N
185
R
C
N
186
N
N
N
187
N
C
N
188
N
O
N
189
N
N
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
O
N
211
N
H
N
212
N
H
N
1
N
sing
N
2
N
doub
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
Y
113
N
doub
Y
114
N
sing
N
115
N
sing
Y
116
N
sing
N
117
N
sing
Y
118
N
doub
N
119
N
sing
N
120
N
sing
Y
121
N
sing
N
122
N
sing
N
123
N
sing
Y
124
N
doub
N
125
N
doub
N
126
N
sing
Y
127
N
doub
Y
128
N
sing
N
129
N
sing
Y
130
N
sing
N
131
N
sing
N
132
N
sing
Y
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
215
313
320
10.1016/S0022-2836(05)80349-3
2152325
Structure of 11-deoxydaunomycin bound to DNA containing a phosphorothioate.
1990
10.2210/pdb1d14/pdb
pdb_00001d14
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
283.00
1
DIFFRACTOMETER
NICOLET P3
x-ray
1
1.0
1825.282
DNA (5'-D(*CP*GP*TP*(AS)P*CP*G)-3')
1
syn
polymer
511.520
6-DEOXYDAUNOMYCIN
1
syn
non-polymer
18.015
water
37
nat
water
no
yes
(DC)(DG)(DT)(AS)(DC)(DG)
CGTACG
A
polydeoxyribonucleotide
n
n
n
n
n
n
2.43
49.28
VAPOR DIFFUSION
6.00
pH 6.00, VAPOR DIFFUSION
ROOM TEMPERATURE
WATER
1
MPD
1
NA CACODYLATE
1
SPERMINE
1
MGCL2
1
WATER
2
MPD
2
6.807
1
19
A
1
A
6
1.685
A_DC1:DG6_A
1
3.916
0.213
-0.127
-0.288
-15.981
1
19
A
2
A
5
2.481
A_DG2:DC5_A
2
-0.477
-0.394
-0.363
-0.212
-1.279
1
20
A
3
A
4
0.613
A_DT3:AS4_A
3
-7.390
-0.218
0.185
-0.152
1.279
1
20
A
4
A
3
0.613
A_AS4:DT3_A
4
-7.390
0.218
0.185
-0.152
15.981
1
19
A
5
A
2
2.481
A_DC5:DG2_A
5
-0.477
0.394
-0.363
-0.212
-6.807
1
19
A
6
A
1
1.685
A_DG6:DC1_A
6
3.916
-0.213
-0.127
-0.288
6.899
36.398
A
A
1
2
-4.624
A
A
6
5
7.027
-2.886
0.981
1.485
AA_DC1DG2:DC5DG6_AA
1
0.252
-0.404
36.287
3.233
-1.495
3.149
32.065
A
A
2
3
-5.756
A
A
5
4
3.042
-3.161
-0.939
-0.099
AA_DG2DT3:AS4DC5_AA
2
-5.302
9.656
31.480
0.364
0.788
3.187
42.381
A
A
3
4
1.708
A
A
4
3
3.205
1.235
0.000
-0.591
AA_DT3AS4:DT3AS4_AA
3
0.000
0.000
42.364
-0.940
0.000
3.149
32.065
A
A
4
5
-5.756
A
A
3
2
3.042
-3.161
0.939
-0.099
AA_AS4DC5:DG2DT3_AA
4
5.302
-9.656
31.480
0.364
-0.788
6.899
36.398
A
A
5
6
-4.624
A
A
2
1
7.027
-2.886
-0.981
1.485
AA_DC5DG6:DC1DG2_AA
5
-0.252
0.404
36.287
3.233
1.495
atom_site
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
1
0
1990-10-15
1
1
2008-05-22
1
2
2011-07-13
2
0
2024-02-07
_atom_site.occupancy
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
BNL
1989-10-20
REL
DM3
6-DEOXYDAUNOMYCIN
HOH
water
DM3
7
2
DM3
DM3
7
A
HOH
8
3
HOH
HOH
8
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
34
3
HOH
HOH
34
A
HOH
35
3
HOH
HOH
35
A
HOH
36
3
HOH
HOH
36
A
HOH
37
3
HOH
HOH
37
A
HOH
38
3
HOH
HOH
38
A
HOH
39
3
HOH
HOH
39
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
HOH
42
3
HOH
HOH
42
A
HOH
43
3
HOH
HOH
43
A
HOH
44
3
HOH
HOH
44
A
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
T
3
n
3
DT
3
A
+A
4
n
4
AS
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
author_defined_assembly
2
dimeric
A
AS
4
A
AS
4
DA
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_757
-x+2,y,-z+2
crystal symmetry operation
28.1136824005
0.0000000000
52.2056512049
1
A
HOH
44
C
HOH
1
-5.34
0.80
102.40
97.06
A
A
A
C3'
C2'
C1'
DC
DC
DC
1
1
1
N
1
-11.66
0.70
108.00
96.34
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
4.34
0.50
119.90
124.24
A
A
A
C2
N3
C4
DC
DC
DC
1
1
1
N
1
-5.22
0.40
121.90
116.68
A
A
A
N3
C4
C5
DC
DC
DC
1
1
1
N
1
-8.18
1.20
119.70
111.52
A
A
A
C3'
O3'
P
DC
DC
DG
1
1
2
Y
1
-12.26
1.60
120.90
108.64
A
A
A
P
O5'
C5'
DG
DG
DG
2
2
2
N
1
-2.44
0.40
104.50
102.06
A
A
A
O4'
C4'
C3'
DG
DG
DG
2
2
2
N
1
-7.85
0.80
102.40
94.55
A
A
A
C3'
C2'
C1'
DG
DG
DG
2
2
2
N
1
3.26
0.30
108.30
111.57
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-4.57
0.60
118.80
114.23
A
A
A
C4
C5
C6
DG
DG
DG
2
2
2
N
1
7.32
0.50
111.50
118.82
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
-4.50
0.50
113.10
108.60
A
A
A
N7
C8
N9
DG
DG
DG
2
2
2
N
1
5.13
0.40
106.40
111.53
A
A
A
C8
N9
C4
DG
DG
DG
2
2
2
N
1
-2.91
0.40
105.40
102.49
A
A
A
N9
C4
C5
DG
DG
DG
2
2
2
N
1
4.99
0.60
126.00
130.99
A
A
A
N3
C4
N9
DG
DG
DG
2
2
2
N
1
3.80
0.60
130.40
134.20
A
A
A
C6
C5
N7
DG
DG
DG
2
2
2
N
1
7.60
0.90
116.20
123.80
A
A
A
N1
C2
N2
DG
DG
DG
2
2
2
N
1
-7.30
0.70
119.90
112.60
A
A
A
N3
C2
N2
DG
DG
DG
2
2
2
N
1
-7.78
0.60
128.60
120.82
A
A
A
C5
C6
O6
DG
DG
DG
2
2
2
N
1
8.94
1.20
119.70
128.64
A
A
A
C3'
O3'
P
DG
DG
DT
2
2
3
Y
1
8.95
1.20
110.70
119.65
A
A
A
O5'
P
OP2
DT
DT
DT
3
3
3
N
1
-14.06
1.60
120.90
106.84
A
A
A
P
O5'
C5'
DT
DT
DT
3
3
3
N
1
4.39
0.60
106.00
110.39
A
A
A
O4'
C4'
C3'
DT
DT
DT
3
3
3
N
1
-9.68
0.70
108.00
98.32
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
-2.89
0.40
104.50
101.61
A
A
A
O4'
C4'
C3'
DC
DC
DC
5
5
5
N
1
5.17
0.70
110.30
115.47
A
A
A
C1'
O4'
C4'
DC
DC
DC
5
5
5
N
1
12.05
0.30
108.30
120.35
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
3.35
0.50
119.90
123.25
A
A
A
C2
N3
C4
DC
DC
DC
5
5
5
N
1
-4.79
0.40
121.90
117.11
A
A
A
N3
C4
C5
DC
DC
DC
5
5
5
N
1
3.17
0.50
117.40
120.57
A
A
A
C4
C5
C6
DC
DC
DC
5
5
5
N
1
8.75
0.70
120.20
128.95
A
A
A
C5
C4
N4
DC
DC
DC
5
5
5
N
1
7.25
1.20
119.70
126.95
A
A
A
C3'
O3'
P
DC
DC
DG
5
5
6
Y
1
-16.85
0.90
105.70
88.85
A
A
A
O5'
P
OP1
DG
DG
DG
6
6
6
N
1
4.89
0.60
123.90
128.79
A
A
A
N1
C2
N3
DG
DG
DG
6
6
6
N
1
-4.13
0.50
111.90
107.77
A
A
A
C2
N3
C4
DG
DG
DG
6
6
6
N
1
3.24
0.50
111.50
114.74
A
A
A
C5
C6
N1
DG
DG
DG
6
6
6
N
1
6.97
0.90
116.20
123.17
A
A
A
N1
C2
N2
DG
DG
DG
6
6
6
N
1
-11.86
0.70
119.90
108.04
A
A
A
N3
C2
N2
DG
DG
DG
6
6
6
N
1
A
A
C2'
C1'
DC
DC
1
1
0.109
0.010
1.519
1.628
N
1
A
A
N1
C2
DC
DC
1
1
-0.080
0.010
1.397
1.317
N
1
A
A
N3
C4
DC
DC
1
1
0.066
0.007
1.335
1.401
N
1
A
A
P
O5'
DG
DG
2
2
0.065
0.010
1.593
1.658
N
1
A
A
O3'
C3'
DG
DG
2
2
-0.036
0.006
1.419
1.383
N
1
A
A
C6
N1
DG
DG
2
2
-0.078
0.007
1.391
1.313
N
1
A
A
C8
N9
DG
DG
2
2
-0.045
0.007
1.374
1.329
N
1
A
A
C2
N2
DG
DG
2
2
-0.141
0.010
1.341
1.200
N
1
A
A
O4'
C1'
DT
DT
3
3
0.089
0.011
1.420
1.509
N
1
A
A
O3'
C3'
DT
DT
3
3
-0.052
0.006
1.419
1.367
N
1
A
A
P
OP1
DC
DC
5
5
-0.125
0.017
1.485
1.360
N
1
A
A
P
O5'
DC
DC
5
5
0.105
0.010
1.593
1.698
N
1
A
A
C5'
C4'
DC
DC
5
5
0.051
0.007
1.512
1.563
N
1
A
A
O4'
C1'
DC
DC
5
5
-0.086
0.012
1.418
1.332
N
1
A
A
O4'
C4'
DC
DC
5
5
-0.080
0.010
1.446
1.366
N
1
A
A
N1
C6
DC
DC
5
5
0.039
0.006
1.367
1.406
N
1
A
A
N3
C4
DC
DC
5
5
0.070
0.007
1.335
1.405
N
1
A
A
P
O5'
DG
DG
6
6
0.066
0.010
1.593
1.659
N
1
A
A
C4'
C3'
DG
DG
6
6
0.093
0.010
1.529
1.622
N
1
A
A
O4'
C1'
DG
DG
6
6
0.090
0.011
1.420
1.510
N
1
A
A
N1
C2
DG
DG
6
6
-0.061
0.008
1.373
1.312
N
1
A
A
C6
N1
DG
DG
6
6
-0.059
0.007
1.391
1.332
N
1
A
A
C2
N2
DG
DG
6
6
-0.116
0.010
1.341
1.225
N
1
A
A
O
O
HOH
HOH
43
43
1.95
1_555
2_857
0.224
1.500
2129
1
2.000
TR
isotropic
TR
isotropic
1.500
37
194
38
119
0
fix
fix
1.500
1D14
2129
2.000
1
refinement
NUCLSQ
STRUCTURE OF 11-DEOXYDAUNOMYCIN BOUND TO DNA CONTAINING A PHOSPHOROTHIOATE
1
N
N
2
N
N
3
N
N
covale
1.557
both
A
DT
3
A
O3'
DT
3
1_555
A
AS
4
A
P
AS
4
1_555
covale
1.575
both
A
AS
4
A
O3'
AS
4
1_555
A
DC
5
A
P
DC
5
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
A
DG
6
A
N1
DG
6
2_757
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
A
DG
6
A
O6
DG
6
2_757
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
A
DG
6
A
N2
DG
6
2_757
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
A
DC
5
A
N3
DC
5
2_757
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
A
DC
5
A
O2
DC
5
2_757
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
A
DC
5
A
N4
DC
5
2_757
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
A
AS
4
A
N1
AS
4
2_757
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
A
AS
4
A
N6
AS
4
2_757
hydrog
WATSON-CRICK
A
AS
4
A
N1
AS
4
1_555
A
DT
3
A
N3
DT
3
2_757
hydrog
WATSON-CRICK
A
AS
4
A
N6
AS
4
1_555
A
DT
3
A
O4
DT
3
2_757
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
A
DG
2
A
N1
DG
2
2_757
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
A
DG
2
A
O6
DG
2
2_757
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
A
DG
2
A
N2
DG
2
2_757
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
A
DC
1
A
N3
DC
1
2_757
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
A
DC
1
A
O2
DC
1
2_757
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
A
DC
1
A
N4
DC
1
2_757
DNA
RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA
1D14
PDB
1
1D14
1
6
1D14
1
6
1D14
A
1
1
6
BINDING SITE FOR RESIDUE DM3 A 7
A
DM3
7
Software
12
A
DC
1
A
DC
1
12
1_555
A
DG
2
A
DG
2
12
1_555
A
DT
3
A
DT
3
12
1_455
A
DT
3
A
DT
3
12
1_555
A
AS
4
A
AS
4
12
1_555
A
HOH
12
C
HOH
12
1_555
A
HOH
13
C
HOH
12
1_555
A
HOH
15
C
HOH
12
1_555
A
HOH
17
C
HOH
12
1_555
A
HOH
26
C
HOH
12
1_555
A
HOH
29
C
HOH
12
1_555
A
HOH
39
C
HOH
12
1_655
3
P 1 2 1